Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer . 0 hgsc.bcm.edu 37 14 106350766 106350766 + IGR SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu 37 22 22569444 22569444 + IGR SNP A A C novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu 37 22 23047144 23047144 + IGR SNP C C T rs62218411 unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu 37 2 90060873 90060873 + IGR SNP A A T rs444396 byfrequency TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu 37 7 142498833 142498833 + IGR SNP A A T rs1042956 bycluster;byfrequency TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu;ucsc.edu 37 14 22521194 22521194 + IGR SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu;ucsc.edu 37 14 22946684 22946684 + IGR SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu;ucsc.edu 37 14 23009181 23009181 + IGR SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu;ucsc.edu 37 2 89475831 89475831 + IGR SNP A A G rs389457 unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . 0 hgsc.bcm.edu;ucsc.edu 37 2 90139116 90139116 + IGR SNP G G A rs2848292 unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 1SEPT2 0 broad.mit.edu;hgsc.bcm.edu 37 16 4833399 4833399 + Intron SNP T T A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq 1SEPT4 0 broad.mit.edu;hgsc.bcm.edu 37 7 55886846 55886846 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq 1SEPT5 0 hgsc.bcm.edu;ucsc.edu 37 1 87370578 87370578 + Intron SNP T T G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID A1BG 1 broad.mit.edu 37 19 58863915 58863915 + Nonsense_Mutation SNP A T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx A1BG 1 broad.mit.edu 37 19 58870088 58870088 + Intron DEL G - - rs11332731 bycluster TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx A1CF 29974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 52566613 52566613 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A1CF 29974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 52601746 52601746 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A1CF 29974 hgsc.bcm.edu 37 10 52575931 52575931 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID A1CF 29974 hgsc.bcm.edu;ucsc.edu 37 10 52569667 52569667 + Silent SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID A2BP1 0 broad.mit.edu 37 16 7703894 7703894 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx A2BP1 0 hgsc.bcm.edu;ucsc.edu 37 16 7726799 7726799 + Nonsense_Mutation SNP C C G rs182244522 by1000genomes;alternate_allele TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9225307 9225307 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9230391 9230391 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9230405 9230405 + Silent SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9248168 9248168 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 broad.mit.edu;hgsc.bcm.edu 37 12 8995734 8995734 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9000255 9000255 + Silent SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9008181 9008181 + Silent SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 hgsc.bcm.edu 37 12 8998670 8998670 + Intron SNP C C T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 hgsc.bcm.edu 37 12 9016563 9016564 + Frame_Shift_Del DEL GC GC - rs144686314 by1000genomes TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 hgsc.bcm.edu 37 12 9016563 9016564 + Frame_Shift_Del DEL GC GC - rs144686314 by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 hgsc.bcm.edu;ucsc.edu 37 12 8975326 8975326 + Intron SNP A A C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A2ML1 144568 hgsc.bcm.edu;ucsc.edu 37 12 8987287 8987287 + Splice_Region SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID A4GNT 51146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 137843364 137843364 + Silent SNP T T C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq A4GNT 51146 broad.mit.edu;ucsc.edu 37 3 137843327 137843327 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AAAS 8086 broad.mit.edu 37 12 53708552 53708552 + Silent SNP A T T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AAAS 8086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53702266 53702266 + Silent SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AAAS 8086 hgsc.bcm.edu;ucsc.edu 37 12 53702729 53702729 + Intron SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AACSL 0 broad.mit.edu 37 5 178192987 178192987 + RNA DEL A - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AACSL 0 broad.mit.edu 37 5 178194326 178194326 + RNA SNP C T T rs34080101 bycluster;byfrequency;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AADAC 13 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151545364 151545364 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AADACL3 126767 broad.mit.edu 37 1 12785985 12785985 + 3'UTR SNP A G G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AADACL3 126767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12785730 12785730 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AADACL3 126767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12785830 12785830 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AADACL4 343066 broad.mit.edu 37 1 12726742 12726742 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AADACL4 343066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12711197 12711197 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AAGAB 79719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 67524205 67524205 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AAGAB 79719 hgsc.bcm.edu;ucsc.edu 37 15 67496448 67496448 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AAGAB 79719 broad.mit.edu 37 15 67494910 67494910 + 3'UTR DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AAK1 22848 broad.mit.edu 37 2 69702945 69702945 + 3'UTR SNP G A A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AAK1 22848 broad.mit.edu;ucsc.edu 37 2 69704092 69704092 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AAK1 22848 hgsc.bcm.edu 37 2 69741762 69741762 + Silent SNP T T C rs77547121 unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AAMP 14 broad.mit.edu;ucsc.edu 37 2 219134687 219134687 + Intron SNP A G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AARS 16 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 70296355 70296355 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AARS2 57505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44270802 44270802 + Splice_Site SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AARS2 57505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44274036 44274036 + Silent SNP C C A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AARSD1 80755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41122331 41122331 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AARSD1 80755 hgsc.bcm.edu 37 17 41121217 41121217 + Intron SNP G G A rs7217553 bycluster;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AARSD1 80755 hgsc.bcm.edu 37 17 41121217 41121217 + Intron SNP G G A rs7217553 bycluster;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AARSD1 80755 hgsc.bcm.edu;ucsc.edu 37 17 41122381 41122381 + Intron SNP C C G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASDH 132949 broad.mit.edu;hgsc.bcm.edu 37 4 57204599 57204599 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASDH 132949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57215942 57215942 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASDH 132949 hgsc.bcm.edu;ucsc.edu 37 4 57216203 57216203 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASDHPPT 60496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 105962108 105962108 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASDHPPT 60496 hgsc.bcm.edu;ucsc.edu 37 11 105967561 105967561 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASS 10157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121717991 121717991 + Frame_Shift_Del DEL T T - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASS 10157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121719654 121719654 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASS 10157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121766489 121766489 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AASS 10157 hgsc.bcm.edu 37 7 121721615 121721615 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AASS 10157 hgsc.bcm.edu 37 7 121741509 121741509 + Intron SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AATK 9625 broad.mit.edu;hgsc.bcm.edu 37 17 79094705 79094705 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AATK 9625 broad.mit.edu;hgsc.bcm.edu 37 17 79098648 79098648 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABAT 18 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 8844355 8844355 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA10 10349 broad.mit.edu 37 17 67189255 67189255 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA10 10349 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67189998 67189998 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA10 10349 hgsc.bcm.edu;ucsc.edu 37 17 67186562 67186562 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA10 10349 hgsc.bcm.edu;ucsc.edu 37 17 67212477 67212477 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA1 19 broad.mit.edu 37 9 107546504 107546504 + 3'UTR SNP A G G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA1 19 broad.mit.edu 37 9 107548824 107548824 + Intron SNP G A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA1 19 broad.mit.edu 37 9 107550109 107550109 + Intron SNP T C C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA1 19 broad.mit.edu;hgsc.bcm.edu 37 9 107558674 107558674 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABCA1 19 broad.mit.edu;hgsc.bcm.edu 37 9 107618219 107618219 + Intron SNP C C G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA1 19 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107564349 107564349 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABCA1 19 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107573110 107573110 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABCA1 19 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107651383 107651383 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABCA1 19 broad.mit.edu;ucsc.edu 37 9 107558370 107558370 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA1 19 hgsc.bcm.edu 37 9 107651480 107651480 + Splice_Region SNP A A T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA1 19 hgsc.bcm.edu;ucsc.edu 37 9 107573139 107573139 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID ABCA1 19 hgsc.bcm.edu;ucsc.edu 37 9 107589428 107589428 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ABCA11P 79963 broad.mit.edu 37 4 420664 420664 + Missense_Mutation SNP G T T rs1053401 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215818763 215818763 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215838696 215838696 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215839587 215839587 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215868936 215868936 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215876834 215876834 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215880269 215880269 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA12 26154 hgsc.bcm.edu 37 2 215821424 215821424 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA12 26154 hgsc.bcm.edu 37 2 215845228 215845228 + Silent SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA12 26154 hgsc.bcm.edu;ucsc.edu 37 2 215831608 215831608 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA13 154664 broad.mit.edu;hgsc.bcm.edu 37 7 48312183 48312183 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu 37 7 48634311 48634311 + Silent SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48312610 48312610 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48313955 48313955 + Silent SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48314043 48314043 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48314761 48314761 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48315960 48315961 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48353926 48353926 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48556330 48556330 + Silent SNP T T A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48556346 48556346 + Silent SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 broad.mit.edu;ucsc.edu 37 7 48411895 48411895 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA13 154664 broad.mit.edu;ucsc.edu 37 7 48682951 48682951 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA13 154664 hgsc.bcm.edu 37 7 48428725 48428725 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA13 154664 hgsc.bcm.edu 37 7 48452147 48452147 + Silent SNP G G A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA13 154664 hgsc.bcm.edu 37 7 48563848 48563848 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA13 154664 hgsc.bcm.edu;ucsc.edu 37 7 48556371 48556371 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA13 154664 hgsc.bcm.edu;ucsc.edu 37 7 48654937 48654937 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA2 20 broad.mit.edu 37 9 139914612 139914613 + Intron INS - CTG CTG rs11273732 unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA2 20 broad.mit.edu 37 9 139914614 139914615 + Intron INS - GCCC GCCC rs57173284 unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA2 20 broad.mit.edu 37 9 139914615 139914616 + Intron INS - G G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA2 20 broad.mit.edu 37 9 139917547 139917548 + Intron DEL GA - - rs143669673 bycluster;by1000genomes TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA2 20 broad.mit.edu;hgsc.bcm.edu 37 9 139909971 139909971 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA2 20 broad.mit.edu;hgsc.bcm.edu 37 9 139916407 139916407 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA2 20 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139906470 139906470 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA3 21 broad.mit.edu;hgsc.bcm.edu 37 16 2373508 2373508 + Intron SNP T T C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA3 21 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2328063 2328063 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABCA3 21 hgsc.bcm.edu 37 16 2376045 2376045 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA3 21 hgsc.bcm.edu 37 16 2376045 2376045 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA4 24 broad.mit.edu 37 1 94514511 94514511 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA4 24 broad.mit.edu;hgsc.bcm.edu 37 1 94568687 94568687 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA4 24 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94466632 94466632 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA4 24 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94476403 94476403 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA4 24 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94564377 94564377 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA4 24 hgsc.bcm.edu;ucsc.edu 37 1 94568673 94568673 + Silent SNP G G T rs148091207 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA5 23461 broad.mit.edu 37 17 67310577 67310577 + 5'UTR DEL A - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA5 23461 broad.mit.edu 37 17 67310664 67310664 + 5'UTR SNP C T T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA5 23461 broad.mit.edu;hgsc.bcm.edu 37 17 67280186 67280186 + Nonsense_Mutation SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA5 23461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67298930 67298930 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA5 23461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67302951 67302951 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA5 23461 hgsc.bcm.edu 37 17 67266771 67266771 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA5 23461 hgsc.bcm.edu 37 17 67282458 67282458 + Splice_Region SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA5 23461 hgsc.bcm.edu;ucsc.edu 37 17 67243707 67243707 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA5 23461 hgsc.bcm.edu;ucsc.edu 37 17 67264115 67264115 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA6 23460 broad.mit.edu 37 17 67101822 67101822 + Intron SNP A G G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA6 23460 broad.mit.edu 37 17 67101823 67101823 + Intron SNP G T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA6 23460 broad.mit.edu 37 17 67124895 67124895 + Silent SNP G T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA6 23460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67124896 67124896 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA7 10347 broad.mit.edu 37 19 1056479 1056479 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1043790 1043790 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1044699 1044699 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1048966 1048966 + Missense_Mutation SNP A A T rs145106069 unknown;alternate_allele TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1051287 1051287 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1054031 1054031 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA7 10347 hgsc.bcm.edu 37 19 1049305 1049305 + Silent SNP C C A rs4147915 bycluster;byfrequency;by1000genomes TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA7 10347 hgsc.bcm.edu 37 19 1049305 1049305 + Silent SNP C C A rs4147915 bycluster;byfrequency;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA8 10351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66878106 66878106 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA8 10351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66881449 66881449 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA8 10351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66883567 66883567 + Silent SNP G G C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA8 10351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66924117 66924117 + Silent SNP A A G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA8 10351 hgsc.bcm.edu 37 17 66933090 66933090 + Splice_Site SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA9 10350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67023488 67023488 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA9 10350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67023934 67023934 + Silent SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCA9 10350 hgsc.bcm.edu 37 17 67016618 67016618 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCA9 10350 hgsc.bcm.edu;ucsc.edu 37 17 67039701 67039701 + Silent SNP G G C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCB10 23456 hgsc.bcm.edu 37 1 229683267 229683267 + Silent SNP A A T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCB11 8647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 169869900 169869900 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB11 8647 hgsc.bcm.edu;ucsc.edu 37 2 169824926 169824926 + Intron SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCB1 5243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87175282 87175282 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB1 5243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87183102 87183102 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB1 5243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87196210 87196210 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB1 5243 broad.mit.edu;ucsc.edu 37 7 87214930 87214930 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCB4 5244 hgsc.bcm.edu;ucsc.edu 37 7 87049340 87049340 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCB5 340273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 20682904 20682904 + Silent SNP A A C novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB5 340273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 20739468 20739468 + Silent SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB5 340273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 20768032 20768032 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB5 340273 hgsc.bcm.edu 37 7 20685686 20685686 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB5 340273 hgsc.bcm.edu;ucsc.edu 37 7 20685684 20685684 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB5 340273 hgsc.bcm.edu;ucsc.edu 37 7 20785034 20785034 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB6 10058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220075171 220075171 + Missense_Mutation SNP A A C rs151051476 byfrequency;alternate_allele TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCB6 10058 broad.mit.edu;ucsc.edu 37 2 220075789 220075789 + Silent SNP G C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCB6 10058 hgsc.bcm.edu;ucsc.edu 37 2 220075156 220075156 + Silent SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCB7 22 hgsc.bcm.edu;ucsc.edu 37 X 74290344 74290344 + Silent SNP A A C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCB8 11194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150731895 150731895 + Silent SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC10 89845 broad.mit.edu 37 6 43395697 43395697 + Intron SNP T G G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCC10 89845 broad.mit.edu 37 6 43417778 43417778 + Missense_Mutation SNP G C C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCC10 89845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43400901 43400901 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC10 89845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43402438 43402438 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC10 89845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43402469 43402469 + Silent SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC11 85320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48244895 48244895 + Silent SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC11 85320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48256589 48256589 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC12 94160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48149472 48149472 + Missense_Mutation SNP G G A rs146005796 unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC12 94160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48173117 48173117 + Missense_Mutation SNP G G A rs141109408 byfrequency;alternate_allele TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC12 94160 hgsc.bcm.edu 37 16 48120639 48120639 + Intron SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC12 94160 hgsc.bcm.edu 37 16 48141279 48141279 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC1 4363 broad.mit.edu 37 16 16235190 16235190 + 3'UTR SNP C T T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCC1 4363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 16108476 16108476 + Silent SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC1 4363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 16149977 16149977 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC1 4363 broad.mit.edu;ucsc.edu 37 16 16225792 16225795 + Splice_Site DEL GGTG - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 GGTG GGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCC1 4363 hgsc.bcm.edu;ucsc.edu 37 16 16142001 16142001 + Silent SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC2 1244 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101552068 101552068 + Silent SNP A A G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC2 1244 hgsc.bcm.edu;ucsc.edu 37 10 101567974 101568006 + Frame_Shift_Del DEL CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC3 8714 hgsc.bcm.edu 37 17 48735824 48735824 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC3 8714 hgsc.bcm.edu 37 17 48741136 48741136 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC3 8714 hgsc.bcm.edu 37 17 48742604 48742604 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC3 8714 hgsc.bcm.edu;ucsc.edu 37 17 48741447 48741447 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC3 8714 hgsc.bcm.edu;ucsc.edu 37 17 48745263 48745263 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC3 8714 hgsc.bcm.edu;ucsc.edu 37 17 48761334 48761334 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC3 8714 hgsc.bcm.edu;ucsc.edu 37 17 48765029 48765029 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC4 10257 broad.mit.edu 37 13 95672857 95672857 + 3'UTR DEL T - - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCC4 10257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95830003 95830003 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC4 10257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95838971 95838971 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC4 10257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95859006 95859006 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC4 10257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95862961 95862961 + Silent SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC5 10057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183669339 183669339 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC5 10057 hgsc.bcm.edu 37 3 183655834 183655834 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC5 10057 hgsc.bcm.edu 37 3 183665257 183665257 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC5 10057 hgsc.bcm.edu 37 3 183665257 183665257 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC5 10057 hgsc.bcm.edu 37 3 183669312 183669312 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC5 10057 hgsc.bcm.edu;ucsc.edu 37 3 183706414 183706414 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC6 368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 16256866 16256866 + Nonsense_Mutation SNP G G A rs72653744 bycluster TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC6 368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 16284071 16284071 + Missense_Mutation SNP C C T rs140045277 unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC6 368 broad.mit.edu;ucsc.edu 37 16 16244592 16244592 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCC6 368 hgsc.bcm.edu 37 16 16282704 16282704 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC8 6833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17418564 17418564 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21960403 21960403 + Silent SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21968702 21968702 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21991035 21991035 + Silent SNP T T A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22015946 22015946 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22068794 22068794 + Silent SNP G G T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22069954 22069954 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCC9 10060 hgsc.bcm.edu 37 12 21997480 21997480 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCC9 10060 hgsc.bcm.edu;ucsc.edu 37 12 22065833 22065833 + Silent SNP G G T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCD1 215 broad.mit.edu 37 X 153008982 153008982 + Silent SNP C T T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCD2 225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 39980001 39980001 + Missense_Mutation SNP C C G rs151149571 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCD3 5825 broad.mit.edu 37 1 94883978 94883980 + 5'UTR DEL GCC - - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCD3 5825 broad.mit.edu 37 1 94883978 94883980 + 5'UTR DEL GCC - - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCD3 5825 broad.mit.edu 37 1 94982960 94982960 + 3'UTR DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCD3 5825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94943864 94943864 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCD3 5825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94946103 94946103 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCD3 5825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94953300 94953300 + Silent SNP T T C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCD4 5826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74757105 74757105 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCD4 5826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74763075 74763075 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCD4 5826 broad.mit.edu;ucsc.edu 37 14 74763081 74763081 + Missense_Mutation SNP A G G rs145669133 byfrequency TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCD4 5826 hgsc.bcm.edu;ucsc.edu 37 14 74755481 74755481 + Intron SNP G G T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCE1 6059 broad.mit.edu;hgsc.bcm.edu 37 4 146041212 146041212 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCF1 23 broad.mit.edu 37 6 30551602 30551602 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCF1 23 broad.mit.edu;hgsc.bcm.edu 37 6 30548295 30548295 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCF1 23 hgsc.bcm.edu 37 6 30558477 30558478 + Frame_Shift_Ins INS - - A rs72545970 bycluster TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG1 9619 broad.mit.edu;hgsc.bcm.edu 37 21 43711704 43711704 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG1 9619 hgsc.bcm.edu 37 21 43621766 43621766 + Intron SNP T T G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCG1 9619 hgsc.bcm.edu 37 21 43621853 43621853 + Intron SNP G G A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCG2 9429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 89016750 89016750 + Silent SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG4 64137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119029566 119029566 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG4 64137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119031335 119031335 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG4 64137 hgsc.bcm.edu;ucsc.edu 37 11 119031336 119031336 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABCG5 64240 broad.mit.edu 37 2 44040208 44040208 + 3'UTR SNP A G G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCG5 64240 broad.mit.edu 37 2 44065648 44065650 + Intron DEL AGC - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 AGC AGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCG5 64240 broad.mit.edu 37 2 44065669 44065669 + Intron SNP G A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABCG5 64240 broad.mit.edu;hgsc.bcm.edu 37 2 44040251 44040251 + 3'UTR SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG5 64240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44065039 44065039 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG8 64241 broad.mit.edu;hgsc.bcm.edu 37 2 44079623 44079623 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABCG8 64241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44073354 44073354 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD11 83451 hgsc.bcm.edu 37 7 73153111 73153111 + Missense_Mutation SNP T T C rs111275772 unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABHD12 26090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 25282909 25282909 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD14A 25864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52012054 52012054 + Silent SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD14B 84836 broad.mit.edu 37 3 52003724 52003725 + Intron INS - GA GA novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD14B 84836 broad.mit.edu 37 3 52003893 52003894 + Intron DEL GA - - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD15 116236 broad.mit.edu 37 17 27893483 27893483 + Missense_Mutation SNP C G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD15 116236 hgsc.bcm.edu;ucsc.edu 37 17 27889659 27889659 + Nonsense_Mutation SNP C C A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD1 84696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27346840 27346840 + Silent SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD1 84696 hgsc.bcm.edu 37 2 27352257 27352257 + Intron SNP C C G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABHD2 11057 broad.mit.edu 37 15 89744352 89744352 + 3'UTR SNP T A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD2 11057 broad.mit.edu 37 15 89744770 89744770 + 3'UTR SNP A G G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD2 11057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89731484 89731484 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD3 171586 broad.mit.edu 37 18 19231495 19231495 + 3'UTR SNP A T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD3 171586 broad.mit.edu 37 18 19231521 19231521 + 3'UTR SNP T A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD3 171586 broad.mit.edu 37 18 19231546 19231546 + 3'UTR SNP T A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD3 171586 broad.mit.edu 37 18 19236788 19236788 + Intron SNP C A A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD3 171586 broad.mit.edu 37 18 19284677 19284678 + 5'UTR INS - GAGCGGGCGA GAGCGGGCGA novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABHD3 171586 hgsc.bcm.edu;ucsc.edu 37 18 19239274 19239274 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABHD8 79575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17405546 17405546 + Silent SNP G G T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABI1 10006 broad.mit.edu 37 10 27054165 27054165 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABI2 10152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 204267389 204267389 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABI2 10152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 204281636 204281636 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABI2 10152 hgsc.bcm.edu;ucsc.edu 37 2 204259531 204259531 + Silent SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABI3BP 25890 broad.mit.edu 37 3 100595388 100595388 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABL1 25 broad.mit.edu 37 9 133589643 133589643 + Translation_Start_Site SNP C T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABL1 25 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133750263 133750263 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABL1 25 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133760875 133760875 + Silent SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ABL1 25 broad.mit.edu;ucsc.edu 37 9 133729596 133729596 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABL1 25 hgsc.bcm.edu 37 9 133730431 133730431 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABL1 25 hgsc.bcm.edu 37 9 133738356 133738356 + Silent SNP G G A rs121913458 unknown;alternate_allele TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABL2 27 broad.mit.edu 37 1 179079801 179079801 + Intron SNP T G G rs188393910 by1000genomes;alternate_allele TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABL2 27 broad.mit.edu 37 1 179079801 179079801 + Intron SNP T G G rs188393910 by1000genomes;alternate_allele TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABL2 27 broad.mit.edu 37 1 179086363 179086363 + Intron SNP T G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABL2 27 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 179090792 179090792 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABL2 27 hgsc.bcm.edu;ucsc.edu 37 1 179079996 179079996 + Intron SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABL2 27 hgsc.bcm.edu;ucsc.edu 37 1 179100500 179100500 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABLIM1 3983 broad.mit.edu 37 10 116444218 116444218 + 5'UTR SNP A T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABLIM1 3983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116201492 116201492 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABLIM1 3983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116307474 116307474 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABLIM1 3983 hgsc.bcm.edu 37 10 116417921 116417922 + Frame_Shift_Ins INS - - AAAA novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABLIM1 3983 hgsc.bcm.edu;ucsc.edu 37 10 116227940 116227940 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABLIM2 84448 broad.mit.edu 37 4 8009586 8009587 + Intron INS - C C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABLIM2 84448 broad.mit.edu 37 4 8009692 8009692 + Intron SNP C A A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABLIM2 84448 hgsc.bcm.edu 37 4 8108315 8108315 + Silent SNP C C T rs41266521 bycluster;byfrequency;by1000genomes TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABLIM3 22885 broad.mit.edu;hgsc.bcm.edu 37 5 148590289 148590289 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABLIM3 22885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148629402 148629402 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABLIM3 22885 broad.mit.edu;ucsc.edu 37 5 148521634 148521634 + 5'UTR SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABLIM3 22885 hgsc.bcm.edu;ucsc.edu 37 5 148521639 148521639 + 5'UTR SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABO 28 broad.mit.edu 37 9 136131057 136131057 + Frame_Shift_Del DEL G - - rs150311214 by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABO 28 hgsc.bcm.edu 37 9 136131057 136131057 + Frame_Shift_Del DEL G G - rs150311214 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABO 28 hgsc.bcm.edu 37 9 136131057 136131057 + Frame_Shift_Del DEL G G - rs150311214 by1000genomes TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABO 28 hgsc.bcm.edu 37 9 136131622 136131622 + Frame_Shift_Del DEL T T - rs56284703 unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABP1 26 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150554284 150554284 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABP1 26 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150554402 150554402 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABP1 26 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150558103 150558103 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABP1 26 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150558149 150558149 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABP1 26 hgsc.bcm.edu;ucsc.edu 37 7 150554954 150554954 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABR 29 broad.mit.edu 37 17 915255 915255 + Intron SNP G C C rs113364180 byfrequency TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABR 29 broad.mit.edu 37 17 915255 915255 + Intron SNP G C C rs113364180 byfrequency TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABR 29 broad.mit.edu 37 17 915255 915255 + Intron SNP G C C rs113364180 byfrequency TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABR 29 broad.mit.edu 37 17 915255 915255 + Intron SNP G C C rs113364180 byfrequency TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABR 29 broad.mit.edu 37 17 915255 915255 + Intron SNP G C C rs113364180 byfrequency TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABR 29 hgsc.bcm.edu;ucsc.edu 37 17 994934 994934 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABRA 137735 broad.mit.edu;hgsc.bcm.edu 37 8 107773724 107773724 + Silent SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABRA 137735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 107773573 107773573 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABRA 137735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 107773580 107773580 + Silent SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABRA 137735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 107773583 107773583 + Silent SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABRA 137735 hgsc.bcm.edu 37 8 107773283 107773283 + Silent SNP C C G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABT1 29777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26598223 26598223 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABTB1 80325 broad.mit.edu 37 3 127399635 127399635 + 3'UTR SNP C A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ABTB1 80325 broad.mit.edu;hgsc.bcm.edu 37 3 127399686 127399686 + RNA SNP T T C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABTB2 25841 hgsc.bcm.edu 37 11 34174107 34174107 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ABTB2 25841 hgsc.bcm.edu 37 11 34175904 34175904 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABTB2 25841 hgsc.bcm.edu 37 11 34186251 34186251 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ABTB2 25841 hgsc.bcm.edu 37 11 34378374 34378374 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACA 31 broad.mit.edu 37 17 35578563 35578563 + Intron SNP G T T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACACA 31 broad.mit.edu;hgsc.bcm.edu 37 17 35581913 35581913 + Silent SNP C C T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACA 31 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35545400 35545400 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACA 31 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35600351 35600351 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACA 31 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35640308 35640308 + Splice_Site SNP T T C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACA 31 broad.mit.edu;ucsc.edu 37 17 35487038 35487038 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACACB 32 broad.mit.edu;hgsc.bcm.edu 37 12 109660697 109660697 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACB 32 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109577276 109577276 + Silent SNP C C A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACB 32 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109689927 109689927 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACB 32 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109702175 109702175 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACACB 32 hgsc.bcm.edu 37 12 109661640 109661640 + Silent SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAD10 80724 broad.mit.edu 37 12 112147524 112147524 + Intron SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAD10 80724 broad.mit.edu 37 12 112147524 112147524 + Intron SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAD10 80724 broad.mit.edu 37 12 112147537 112147537 + Intron SNP G A A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAD10 80724 broad.mit.edu 37 12 112194598 112194599 + 3'UTR DEL CT - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAD10 80724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112167663 112167663 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAD10 80724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112186993 112186993 + Silent SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAD10 80724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112193484 112193484 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAD10 80724 hgsc.bcm.edu 37 12 112186271 112186271 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAD11 84129 broad.mit.edu 37 3 132345803 132345803 + Intron SNP A G G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAD11 84129 broad.mit.edu;hgsc.bcm.edu 37 3 132323956 132323956 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAD8 27034 hgsc.bcm.edu 37 11 134131674 134131674 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAD8 27034 hgsc.bcm.edu 37 11 134131683 134131683 + Silent SNP C C T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACADM 34 broad.mit.edu 37 1 76228484 76228484 + 3'UTR SNP C A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACADM 34 broad.mit.edu 37 1 76228484 76228484 + 3'UTR SNP C A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACADM 34 broad.mit.edu 37 1 76228484 76228484 + 3'UTR SNP C A A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACADM 34 broad.mit.edu 37 1 76228484 76228484 + 3'UTR SNP C A A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACADM 34 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76205772 76205772 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACADS 35 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121176678 121176678 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACADS 35 broad.mit.edu;ucsc.edu 37 12 121176678 121176678 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACADVL 37 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7125374 7125374 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACADVL 37 hgsc.bcm.edu;ucsc.edu 37 17 7126718 7126718 + Intron SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAN 176 broad.mit.edu 37 15 89417837 89417837 + 3'UTR DEL A - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAN 176 broad.mit.edu;hgsc.bcm.edu 37 15 89395179 89395179 + Silent SNP T T A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAN 176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89382024 89382024 + Silent SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAN 176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89382103 89382103 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAN 176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89386810 89386810 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAN 176 hgsc.bcm.edu 37 15 89398669 89398669 + Silent SNP T T A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAN 176 hgsc.bcm.edu 37 15 89398671 89398671 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAN 176 hgsc.bcm.edu 37 15 89398671 89398671 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAN 176 hgsc.bcm.edu 37 15 89398733 89398733 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAN 176 hgsc.bcm.edu;ucsc.edu 37 15 89402128 89402128 + Silent SNP C C A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAP1 9744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7246741 7246741 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAP2 23527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 195009916 195009916 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAP2 23527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 195066024 195066024 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAP2 23527 hgsc.bcm.edu 37 3 195022890 195022890 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAP2 23527 hgsc.bcm.edu;ucsc.edu 37 3 195013057 195013057 + Silent SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAP2 23527 hgsc.bcm.edu;ucsc.edu 37 3 195016613 195016613 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACAP3 116983 hgsc.bcm.edu 37 1 1231581 1231581 + Splice_Region SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACAT1 38 broad.mit.edu 37 11 108013318 108013318 + Intron SNP C T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAT1 38 broad.mit.edu 37 11 108018332 108018332 + 3'UTR DEL T - - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACAT2 39 broad.mit.edu 37 6 160182976 160182990 + 5'UTR DEL TGCGCGGGGAGGTGG - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 TGCGCGGGGAGGTGG TGCGCGGGGAGGTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACBD5 91452 broad.mit.edu 37 10 27529390 27529390 + Silent SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACBD5 91452 hgsc.bcm.edu 37 10 27497270 27497270 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACCN1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 31618462 31618463 + Frame_Shift_Del INS - - T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN1 0 hgsc.bcm.edu;ucsc.edu 37 17 31438954 31438961 + Frame_Shift_Del DEL CAGGTACT CAGGTACT - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 CAGGTACT CAGGTACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50453582 50453582 + Silent SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN2 0 hgsc.bcm.edu;ucsc.edu 37 12 50472709 50472709 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACCN3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150748965 150748965 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220396729 220396729 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220402025 220402025 + Silent SNP C C A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN4 0 hgsc.bcm.edu 37 2 220379775 220379776 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN5 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156757933 156757933 + Missense_Mutation SNP T T G rs142739848 unknown;alternate_allele TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCN5 0 hgsc.bcm.edu;ucsc.edu 37 4 156787340 156787340 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCS 84680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 44096169 44096169 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACCS 84680 hgsc.bcm.edu;ucsc.edu 37 11 44104723 44104723 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACCSL 390110 hgsc.bcm.edu;ucsc.edu 37 11 44081417 44081417 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACD 65057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67692130 67692130 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACD 65057 broad.mit.edu;ucsc.edu 37 16 67694268 67694269 + Frame_Shift_Ins INS - G G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACE 1636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61555382 61555382 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACE 1636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61559982 61559982 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACE 1636 hgsc.bcm.edu;ucsc.edu 37 17 61557828 61557828 + Silent SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACE2 59272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15591566 15591566 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACE2 59272 hgsc.bcm.edu 37 X 15585872 15585872 + Silent SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACER1 125981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6309756 6309756 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACER2 340485 broad.mit.edu 37 9 19446560 19446560 + Intron SNP G A A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACHE 43 hgsc.bcm.edu;ucsc.edu 37 7 100490365 100490367 + In_Frame_Del DEL GTT GTT - novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 GTT GTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACHE(dist=114362) 0 hgsc.bcm.edu 37 7 100607903 100607903 + IGR SNP G G A rs6961167 bycluster;byfrequency;by1000genomes TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACHE(dist=115121) 0 hgsc.bcm.edu 37 7 100608662 100608662 + IGR SNP A A G rs74929976 byfrequency;by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACIN1 22985 broad.mit.edu 37 14 23549554 23549554 + Silent SNP G T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACIN1 22985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23533399 23533399 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACIN1 22985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23549183 23549183 + Missense_Mutation SNP T T A rs112438189 unknown;alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACIN1 22985 hgsc.bcm.edu 37 14 23549881 23549881 + Silent SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACIN1 22985 hgsc.bcm.edu 37 14 23549896 23549896 + Silent SNP C C T rs141522105 byfrequency TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACIN1 22985 hgsc.bcm.edu 37 14 23549896 23549896 + Silent SNP C C T rs141522105 byfrequency TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACLY 47 broad.mit.edu;hgsc.bcm.edu 37 17 40049295 40049295 + Missense_Mutation SNP T T G rs144101604 unknown;alternate_allele TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACLY 47 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40028034 40028034 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACLY 47 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40054059 40054059 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACLY 47 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40061042 40061042 + Silent SNP G G T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACLY 47 hgsc.bcm.edu;ucsc.edu 37 17 40039402 40039402 + Silent SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACN9 57001 hgsc.bcm.edu;ucsc.edu 37 7 96747041 96747046 + In_Frame_Del DEL GGGGCG GGGGCG - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 GGGGCG GGGGCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACO1 48 broad.mit.edu 37 9 32427337 32427337 + Missense_Mutation SNP G A A rs189305274 by1000genomes TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACO1 48 broad.mit.edu 37 9 32434667 32434667 + Silent SNP C T T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACO1 48 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32408576 32408576 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACO1 48 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32425989 32425989 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACO1 48 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32433772 32433772 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACO2 50 hgsc.bcm.edu;ucsc.edu 37 22 41914522 41914522 + Silent SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT13 55856 broad.mit.edu 37 6 24703636 24703636 + 3'UTR DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACOT1 641371 hgsc.bcm.edu 37 14 74009978 74009978 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT2 10965 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74036025 74036025 + Silent SNP C C G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT2 10965 hgsc.bcm.edu 37 14 74041836 74041836 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT2 10965 hgsc.bcm.edu;ucsc.edu 37 14 74036108 74036108 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT6 641372 broad.mit.edu 37 14 74083716 74083716 + 5'UTR SNP C T T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACOT6 641372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74086150 74086150 + Silent SNP T T C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT7 11332 broad.mit.edu 37 1 6387379 6387379 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACOT8 10005 broad.mit.edu 37 20 44472491 44472492 + Intron DEL GT - - rs145038592 by1000genomes TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACOT8 10005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44477168 44477168 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOT8 10005 hgsc.bcm.edu 37 20 44483907 44483907 + Silent SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACOT9 23597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23754070 23754070 + Silent SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOX1 51 broad.mit.edu 37 17 73941664 73941664 + 3'UTR SNP T C C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACOX1 51 broad.mit.edu 37 17 73975031 73975031 + Intron SNP G A A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACOX1 51 hgsc.bcm.edu 37 17 73946942 73946942 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOX2 8309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 58490979 58490979 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOX2 8309 hgsc.bcm.edu 37 3 58512375 58512375 + Silent SNP T T C rs1127743 bycluster;byfrequency;by1000genomes TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACOX3 8310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8394072 8394072 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOX3 8310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8416611 8416611 + Silent SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOX3 8310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8418179 8418179 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOXL 55289 hgsc.bcm.edu 37 2 111523349 111523349 + Intron SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACOXL 55289 hgsc.bcm.edu;ucsc.edu 37 2 111567583 111567583 + Intron SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACOXL 55289 hgsc.bcm.edu;ucsc.edu 37 2 111753532 111753532 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACP1 52 hgsc.bcm.edu 37 2 265004 265004 + Missense_Mutation SNP C C G rs147428558 unknown;alternate_allele TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACP2 53 hgsc.bcm.edu;ucsc.edu 37 11 47267291 47267291 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACP5 54 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11687390 11687390 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACP5 54 hgsc.bcm.edu 37 19 11685841 11685841 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACP6 51205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147124277 147124277 + Silent SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACP6 51205 hgsc.bcm.edu;ucsc.edu 37 1 147119248 147119248 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACPL2 92370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141011820 141011820 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACPL2 92370 hgsc.bcm.edu;ucsc.edu 37 3 141011927 141011927 + Silent SNP T T C novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACR 49 broad.mit.edu;hgsc.bcm.edu 37 22 51178394 51178394 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ACRC 93953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70824235 70824235 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACRC 93953 broad.mit.edu;ucsc.edu 37 X 70824426 70824426 + Silent SNP T C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSBG1 23205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78485853 78485853 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSBG1 23205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78486923 78486923 + Silent SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSBG1 23205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78526760 78526760 + Silent SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSBG2 81616 broad.mit.edu 37 19 6177251 6177251 + Missense_Mutation SNP T G G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSBG2 81616 broad.mit.edu 37 19 6190476 6190476 + Intron SNP A G G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSBG2 81616 broad.mit.edu 37 19 6190824 6190833 + Intron DEL ACACACACAC - - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 ACACACACAC ACACACACAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSBG2 81616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6182803 6182803 + Silent SNP C C T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSBG2 81616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6183057 6183057 + Missense_Mutation SNP A A C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSF2 80221 broad.mit.edu 37 17 48551987 48551987 + 3'UTR SNP T C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSF2 80221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48538731 48538731 + Silent SNP G G C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSF2 80221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48539834 48539834 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSF2 80221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48540792 48540792 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSF2 80221 hgsc.bcm.edu 37 17 48549820 48549820 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSF2 80221 hgsc.bcm.edu;ucsc.edu 37 17 48548424 48548424 + Silent SNP A A G novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSF2 80221 hgsc.bcm.edu;ucsc.edu 37 17 48549808 48549808 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSF2 80221 hgsc.bcm.edu;ucsc.edu 37 17 48551039 48551039 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSF3 197322 broad.mit.edu;hgsc.bcm.edu 37 16 89167563 89167563 + Silent SNP G G A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL1 2180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 185694256 185694256 + Silent SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL3 2181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 223795455 223795455 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL4 2182 hgsc.bcm.edu 37 X 108926066 108926066 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSL4 2182 hgsc.bcm.edu;ucsc.edu 37 X 108912271 108912271 + Silent SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSL5 51703 hgsc.bcm.edu;ucsc.edu 37 10 114164332 114164332 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL6 23305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131289980 131289980 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL6 23305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131296216 131296216 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL6 23305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131323842 131323842 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL6 23305 hgsc.bcm.edu;ucsc.edu 37 5 131303724 131303724 + Intron SNP G G T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSL6 23305 hgsc.bcm.edu;ucsc.edu 37 5 131321125 131321125 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM1 116285 broad.mit.edu;hgsc.bcm.edu 37 16 20648507 20648507 + Intron SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM1 116285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20651789 20651789 + Silent SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM1 116285 hgsc.bcm.edu;ucsc.edu 37 16 20696630 20696630 + Silent SNP G G A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSM2A 123876 broad.mit.edu 37 16 20486684 20486684 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSM2A 123876 broad.mit.edu;hgsc.bcm.edu 37 16 20489924 20489925 + Frame_Shift_Ins INS - - C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM2A 123876 hgsc.bcm.edu 37 16 20489924 20489925 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM2B 348158 broad.mit.edu;hgsc.bcm.edu 37 16 20548590 20548590 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM2B 348158 hgsc.bcm.edu 37 16 20557705 20557705 + Intron SNP C C A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM2B 348158 hgsc.bcm.edu 37 16 20570686 20570686 + Silent SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSM2B 348158 hgsc.bcm.edu 37 16 20576048 20576048 + Silent SNP C C A rs78729855 bycluster TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSM3 6296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20796410 20796410 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM3 6296 hgsc.bcm.edu;ucsc.edu 37 16 20803368 20803369 + Frame_Shift_Ins INS - - AA novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM4 341392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7469736 7469736 + Silent SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM4 341392 hgsc.bcm.edu;ucsc.edu 37 12 7459281 7459281 + Silent SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM5 54988 broad.mit.edu;hgsc.bcm.edu 37 16 20451155 20451155 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM5 54988 broad.mit.edu;hgsc.bcm.edu 37 16 20451770 20451770 + 3'UTR SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSM5 54988 hgsc.bcm.edu;ucsc.edu 37 16 20435331 20435332 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSS1 84532 broad.mit.edu 37 20 25038626 25038633 + Frame_Shift_Del DEL GCCGCCCT - - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 GCCGCCCT GCCGCCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSS1 84532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 25011448 25011448 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSS1 84532 hgsc.bcm.edu 37 20 25003643 25003643 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSS1 84532 hgsc.bcm.edu 37 20 25038484 25038484 + Silent SNP G G T rs66817095 bycluster;byfrequency;by1000genomes TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSS1 84532 hgsc.bcm.edu 37 20 25038484 25038484 + Silent SNP G G T rs66817095 bycluster;byfrequency;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSS2 55902 broad.mit.edu 37 20 33508376 33508376 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSS2 55902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33500951 33500951 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSS2 55902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33501198 33501198 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSS2 55902 hgsc.bcm.edu;ucsc.edu 37 20 33501582 33501582 + Silent SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACSS3 79611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 81536908 81536908 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACSS3 79611 broad.mit.edu;ucsc.edu 37 12 81647354 81647354 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACSS3 79611 hgsc.bcm.edu 37 12 81503485 81503485 + Splice_Site SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTA2 59 broad.mit.edu 37 10 90750746 90750746 + 5'UTR SNP C T T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTB 60 broad.mit.edu 37 7 5567272 5567272 + 3'UTR SNP C A A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTB 60 broad.mit.edu 37 7 5567272 5567272 + 3'UTR SNP C A A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTB 60 broad.mit.edu 37 7 5568380 5568380 + Intron SNP T G G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTB 60 broad.mit.edu 37 7 5568380 5568380 + Intron SNP T G G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTBL2 345651 broad.mit.edu;hgsc.bcm.edu 37 5 56777377 56777377 + 3'UTR SNP T T C novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTBL2 345651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56777710 56777710 + Silent SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTBL2 345651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56778275 56778275 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTC1 70 broad.mit.edu;hgsc.bcm.edu 37 15 35085454 35085454 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTG1 71 broad.mit.edu 37 17 79479120 79479120 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTG1 71 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79477756 79477756 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTG1 71 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79478982 79478982 + Silent SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTG2 72 broad.mit.edu 37 2 74146772 74146772 + 3'UTR SNP C A A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTL7B 10880 hgsc.bcm.edu 37 9 111616989 111616989 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTL8 81569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 18149661 18149661 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTL9 284382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8807902 8807902 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTL9 284382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8807932 8807932 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN1 87 broad.mit.edu 37 14 69354687 69354687 + Intron SNP C T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTN1 87 broad.mit.edu 37 14 69445875 69445875 + 5'UTR SNP G C C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTN1 87 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 69349271 69349271 + Silent SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN1 87 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 69356966 69356966 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN2 88 broad.mit.edu 37 1 236925966 236925966 + 3'UTR SNP G A A rs191235353 by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTN2 88 broad.mit.edu 37 1 236926030 236926030 + 3'UTR DEL A - - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTN2 88 broad.mit.edu;hgsc.bcm.edu 37 1 236925938 236925938 + 3'UTR SNP A A T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN2 88 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236891015 236891015 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN2 88 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236924371 236924371 + Silent SNP C C A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN2 88 broad.mit.edu;ucsc.edu 37 1 236911030 236911030 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTN2 88 hgsc.bcm.edu;ucsc.edu 37 1 236912534 236912534 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTN3 89 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66322058 66322058 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTN4 81 broad.mit.edu 37 19 39221071 39221071 + 3'UTR DEL T - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTN4 81 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39216363 39216363 + Splice_Site SNP G G A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR10 55860 hgsc.bcm.edu 37 14 58669661 58669661 + Intron SNP T T A rs74757538 bycluster TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTR10 55860 hgsc.bcm.edu;ucsc.edu 37 14 58701185 58701185 + Silent SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTR1A 10121 hgsc.bcm.edu 37 10 104248835 104248859 + Frame_Shift_Del DEL AATGAAGATGTCGCCTTCAAGGGCT AATGAAGATGTCGCCTTCAAGGGCT - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 AATGAAGATGTCGCCTTCAAGGGCT AATGAAGATGTCGCCTTCAAGGGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR2 10097 broad.mit.edu;hgsc.bcm.edu 37 2 65488448 65488448 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR3B 57180 hgsc.bcm.edu 37 7 152522195 152522195 + Silent SNP C C T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTR3C 653857 broad.mit.edu 37 7 149990455 149990455 + Silent SNP T C C rs2689611 unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTR5 79913 broad.mit.edu;hgsc.bcm.edu 37 20 37383750 37383750 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR5 79913 broad.mit.edu;ucsc.edu 37 20 37396132 37396132 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACTR5 79913 hgsc.bcm.edu 37 20 37394094 37394094 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTR6 64431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100601498 100601498 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR6 64431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100617614 100617614 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR8 93973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53908276 53908276 + Silent SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR8 93973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53908279 53908279 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTR8 93973 hgsc.bcm.edu;ucsc.edu 37 3 53916098 53916098 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTRT1 139741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 127185839 127185839 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACTRT1 139741 hgsc.bcm.edu 37 X 127185630 127185630 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTRT1 139741 hgsc.bcm.edu;ucsc.edu 37 X 127185831 127185831 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ACTRT2 140625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2938986 2938986 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACVR1 90 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158595006 158595006 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACVR1B 91 broad.mit.edu 37 12 52345498 52345500 + 5'UTR DEL GCG - - rs10540557 unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GCG GCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACVR1B 91 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52374764 52374764 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ACVR1B 91 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52374824 52374824 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ACVR1B 91 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52374878 52374878 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ACVR1B 91 hgsc.bcm.edu;ucsc.edu 37 12 52369222 52369222 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID ACVR1C 130399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158412667 158412667 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACVR1C 130399 hgsc.bcm.edu 37 2 158443712 158443712 + Silent SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACVR2A 92 broad.mit.edu 37 2 148602569 148602570 + Intron INS - TTTT TTTT novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ACVR2A 92 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 148677842 148677842 + Missense_Mutation SNP G G T rs111862877 unknown;alternate_allele TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ACVR2B 93 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38519652 38519652 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ACVRL1 94 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52312803 52312803 + Silent SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAD1 132612 hgsc.bcm.edu;ucsc.edu 37 4 123332503 123332503 + Silent SNP C C T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAD2 161931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84229248 84229248 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAD2 161931 hgsc.bcm.edu 37 16 84227694 84227694 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAL 161823 broad.mit.edu 37 15 43644189 43644189 + 3'UTR SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAL 161823 broad.mit.edu 37 15 43644189 43644189 + 3'UTR SNP T C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAL 161823 broad.mit.edu 37 15 43644189 43644189 + 3'UTR SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAL 161823 broad.mit.edu 37 15 43644189 43644189 + 3'UTR SNP T C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAL 161823 broad.mit.edu 37 15 43644189 43644189 + 3'UTR SNP T C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAL 161823 hgsc.bcm.edu;ucsc.edu 37 15 43638090 43638090 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM10 102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58904077 58904077 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM10 102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58925400 58925400 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM10 102 broad.mit.edu;ucsc.edu 37 15 58925453 58925453 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM10 102 broad.mit.edu;ucsc.edu 37 15 58938360 58938360 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM11 4185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42854119 42854119 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM12 8038 broad.mit.edu 37 10 127705804 127705804 + 3'UTR SNP A T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM12 8038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 127824195 127824195 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM15 8751 broad.mit.edu 37 1 155024606 155024606 + Intron DEL G - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM15 8751 hgsc.bcm.edu;ucsc.edu 37 1 155028946 155028946 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAM17 6868 broad.mit.edu 37 2 9634938 9634938 + Intron SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM17 6868 broad.mit.edu 37 2 9634938 9634938 + Intron SNP A C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM18 8749 hgsc.bcm.edu 37 8 39442220 39442220 + Intron SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM18 8749 hgsc.bcm.edu 37 8 39537679 39537679 + Silent SNP C C G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM18 8749 hgsc.bcm.edu;ucsc.edu 37 8 39442220 39442220 + Intron SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM19 8728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156923994 156923994 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM19 8728 hgsc.bcm.edu 37 5 156997963 156997963 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM21 8747 broad.mit.edu 37 14 70925981 70925981 + Missense_Mutation SNP A T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM21 8747 broad.mit.edu;hgsc.bcm.edu 37 14 70925009 70925009 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM21 8747 hgsc.bcm.edu 37 14 70924697 70924697 + Missense_Mutation SNP A A G rs45545935 bycluster TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM21 8747 hgsc.bcm.edu 37 14 70925438 70925438 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM21P1 145241 broad.mit.edu 37 14 70714061 70714061 + 5'UTR SNP G A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM2 2515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 39624434 39624434 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM2 2515 hgsc.bcm.edu;ucsc.edu 37 8 39666986 39666986 + Splice_Site SNP C C T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM22 53616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87795203 87795203 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM23 8745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207413075 207413075 + Silent SNP G G T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM23 8745 hgsc.bcm.edu 37 2 207424812 207424812 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM23 8745 hgsc.bcm.edu 37 2 207424812 207424812 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM23 8745 hgsc.bcm.edu;ucsc.edu 37 2 207435891 207435891 + Intron SNP A A T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM23 8745 hgsc.bcm.edu;ucsc.edu 37 2 207457434 207457434 + Silent SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM28 10863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 24170950 24170950 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM28 10863 hgsc.bcm.edu 37 8 24184055 24184055 + Intron SNP C C G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM28 10863 hgsc.bcm.edu 37 8 24192996 24192996 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM29 11086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175896768 175896768 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAM29 11086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175896895 175896895 + Silent SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAM29 11086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175898804 175898804 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM29 11086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175898846 175898846 + Nonsense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAM29 11086 hgsc.bcm.edu 37 4 175899075 175899075 + Missense_Mutation SNP C C T rs140568401 byfrequency TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM29 11086 hgsc.bcm.edu 37 4 175899076 175899076 + Silent SNP A A G rs61744599 bycluster;byfrequency TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM29 11086 hgsc.bcm.edu 37 4 175899079 175899079 + Silent SNP C C T rs151310201 byfrequency TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM30 11085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120437279 120437279 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM32 203102 hgsc.bcm.edu;ucsc.edu 37 8 39103665 39103666 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM33 80332 broad.mit.edu;hgsc.bcm.edu 37 20 3653456 3653456 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM33 80332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3655259 3655259 + Silent SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM33 80332 hgsc.bcm.edu;ucsc.edu 37 20 3657786 3657786 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM6 8755 broad.mit.edu 37 14 106054693 106054693 + RNA SNP C A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106134510 106134510 + Intron SNP G C C rs10144438 bycluster;byfrequency;byhapmap TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106134536 106134536 + Intron SNP T C C rs3211548 bycluster TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106134738 106134738 + Intron SNP T C C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106173793 106173793 + RNA SNP C G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106234219 106234219 + Intron SNP C G G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106234219 106234219 + Intron SNP C G G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106234219 106234219 + Intron SNP C G G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106234219 106234219 + Intron SNP C G G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106237611 106237611 + RNA SNP C T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106331329 106331329 + Splice_Site SNP C A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106368500 106368500 + Splice_Site SNP C T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106372754 106372754 + Splice_Site SNP C T T rs80059406 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106405448 106405448 + RNA DEL C - - novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106539313 106539313 + RNA SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106539361 106539361 + RNA SNP C A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106539367 106539367 + RNA SNP C G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106667827 106667827 + RNA SNP C A A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106714600 106714600 + RNA SNP G A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106714625 106714625 + RNA SNP G T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106770438 106770439 + Splice_Site INS - CT CT novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106770438 106770439 + Splice_Site INS - CT CT novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106790926 106790926 + RNA SNP C A A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106877447 106877448 + Intron INS - TGATCT TGATCT rs57593057 bycluster;by1000genomes TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106877562 106877562 + Intron SNP A C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106877562 106877562 + Intron SNP A C C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106877591 106877591 + Intron SNP G C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106899139 106899140 + Splice_Site INS - T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106919168 106919168 + RNA DEL C - - rs139643696 bycluster;by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106919168 106919168 + RNA DEL C - - rs139643696 bycluster;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106919168 106919168 + RNA DEL C - - rs139643696 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106919176 106919177 + RNA INS - TG TG novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106974586 106974586 + RNA SNP T G G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 106974612 106974612 + RNA SNP C T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 107183575 107183575 + RNA SNP G T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu 37 14 107183594 107183594 + RNA SNP C T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu;ucsc.edu 37 14 106346892 106346892 + RNA SNP G T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu;ucsc.edu 37 14 106621957 106621958 + Splice_Site DEL GT - - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6 8755 broad.mit.edu;ucsc.edu 37 14 106780513 106780513 + RNA SNP T C C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM6(dist=203636) 0 broad.mit.edu;hgsc.bcm.edu 37 14 106641994 106641994 + IGR SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=229392) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106667750 106667750 + IGR SNP C C T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=229662) 0 broad.mit.edu;hgsc.bcm.edu 37 14 106668020 106668020 + IGR SNP A A T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=286918) 0 hgsc.bcm.edu 37 14 106725276 106725276 + IGR SNP G G A rs12436001 bycluster;byhapmap;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=287124) 0 hgsc.bcm.edu 37 14 106725482 106725482 + IGR SNP A A C rs61756708 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=32957) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106471315 106471315 + IGR SNP G G A rs113102957 bycluster;by1000genomes TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=33157) 0 hgsc.bcm.edu 37 14 106471515 106471515 + IGR SNP C C A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM6(dist=39762) 0 hgsc.bcm.edu 37 14 106478120 106478120 + IGR SNP T T C rs36098210 unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM7 8756 broad.mit.edu 37 8 24366159 24366159 + 3'UTR SNP T C C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM7 8756 hgsc.bcm.edu;ucsc.edu 37 8 24326263 24326263 + Intron SNP T T A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAM8 101 broad.mit.edu 37 10 135076463 135076463 + 3'UTR DEL G - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM9 8754 broad.mit.edu 37 8 38871771 38871771 + Intron DEL T - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAM9 8754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38899622 38899622 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAM9 8754 hgsc.bcm.edu;ucsc.edu 37 8 38869228 38869228 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMDEC1 27299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 24242084 24242084 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMDEC1 27299 hgsc.bcm.edu;ucsc.edu 37 8 24254839 24254839 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS10 81794 broad.mit.edu 37 19 8651052 8651052 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS10 81794 hgsc.bcm.edu 37 19 8660979 8660979 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33576384 33576384 + Silent SNP G G A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33576548 33576548 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33576716 33576716 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33588814 33588814 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33637849 33637849 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33683193 33683193 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33751536 33751536 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33881335 33881335 + Silent SNP G G C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS12 81792 broad.mit.edu;ucsc.edu 37 5 33683970 33683970 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS12 81792 hgsc.bcm.edu 37 5 33549350 33549350 + Missense_Mutation SNP C C G rs112196098 bycluster;byfrequency;by1000genomes TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS13 11093 broad.mit.edu;hgsc.bcm.edu 37 9 136313849 136313849 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS13 11093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136290722 136290722 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS13 11093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136291396 136291396 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS13 11093 hgsc.bcm.edu;ucsc.edu 37 9 136290647 136290647 + Splice_Site SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS14 140766 broad.mit.edu;hgsc.bcm.edu 37 10 72496510 72496510 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS14 140766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 72493772 72493772 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS14 140766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 72498659 72498659 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS15 170689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130341137 130341137 + Missense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS16 170690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 5209271 5209271 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS16 170690 broad.mit.edu;ucsc.edu 37 5 5242262 5242262 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS16 170690 hgsc.bcm.edu;ucsc.edu 37 5 5187899 5187899 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS17 170691 broad.mit.edu 37 15 100514514 100514514 + 3'UTR SNP C G G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS17 170691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 100594117 100594117 + Silent SNP T T C novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS17 170691 hgsc.bcm.edu;ucsc.edu 37 15 100649280 100649281 + In_Frame_Ins INS - - CTCCTT novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS18 170692 broad.mit.edu 37 16 77317610 77317610 + 3'UTR DEL T - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu 37 16 77387747 77387747 + Silent SNP C C T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77325284 77325284 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77327151 77327151 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77353798 77353798 + Missense_Mutation SNP C C T rs149031657 byfrequency;alternate_allele TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77353974 77353974 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS18 170692 hgsc.bcm.edu 37 16 77398222 77398222 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS18 170692 hgsc.bcm.edu 37 16 77468336 77468336 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS18 170692 hgsc.bcm.edu;ucsc.edu 37 16 77401389 77401389 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID ADAMTS18 170692 hgsc.bcm.edu;ucsc.edu 37 16 77465292 77465292 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS19 171019 broad.mit.edu 37 5 129073032 129073032 + 3'UTR DEL T - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS19 171019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129015555 129015555 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS19 171019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129015567 129015567 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS19 171019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129070698 129070698 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS19 171019 hgsc.bcm.edu 37 5 128797315 128797316 + In_Frame_Ins INS - - CCCGGC novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS19 171019 hgsc.bcm.edu 37 5 128797315 128797316 + In_Frame_Ins INS - - CCCGGC novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS19 171019 hgsc.bcm.edu 37 5 128956323 128956323 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS19 171019 hgsc.bcm.edu 37 5 128984499 128984499 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS19 171019 hgsc.bcm.edu 37 5 128994340 128994340 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS1 9510 hgsc.bcm.edu;ucsc.edu 37 21 28213405 28213407 + In_Frame_Del DEL CAT CAT - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 CAT CAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS1 9510 hgsc.bcm.edu;ucsc.edu 37 21 28214876 28214876 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS20 80070 broad.mit.edu 37 12 43822466 43822466 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS20 80070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 43769952 43769952 + Splice_Site SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS20 80070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 43771275 43771275 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS20 80070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 43777521 43777521 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS20 80070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 43862444 43862444 + Silent SNP T T G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43777460 43777460 + Silent SNP C C A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43819454 43819454 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43825141 43825141 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43825222 43825222 + Silent SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43896209 43896209 + Splice_Site SNP C C T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu 37 5 178548695 178548695 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu 37 5 178771139 178771139 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178555036 178555036 + Silent SNP G G A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178557016 178557016 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178579193 178579193 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS2 9509 hgsc.bcm.edu 37 5 178559878 178559878 + Silent SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS2 9509 hgsc.bcm.edu 37 5 178634637 178634637 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS3 9508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73175164 73175164 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS4 9507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161166010 161166010 + Silent SNP A A T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS5 11096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 28296852 28296852 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS5 11096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 28337626 28337626 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS5 11096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 28338273 28338273 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS5 11096 hgsc.bcm.edu;ucsc.edu 37 21 28327065 28327065 + Silent SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS6 11174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64483842 64483842 + Splice_Site SNP C C G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS6 11174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64510620 64510620 + Splice_Site SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS6 11174 hgsc.bcm.edu 37 5 64629939 64629939 + Intron SNP G G T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS7 11173 broad.mit.edu 37 15 79051886 79051886 + Silent SNP G A A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS7 11173 broad.mit.edu 37 15 79090324 79090324 + Silent SNP A C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS7 11173 broad.mit.edu;hgsc.bcm.edu 37 15 79058756 79058756 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS7 11173 broad.mit.edu;hgsc.bcm.edu 37 15 79059785 79059785 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS7 11173 hgsc.bcm.edu 37 15 79090348 79090348 + Silent SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS8 11095 broad.mit.edu 37 11 130281574 130281574 + Intron SNP C T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTS8 11095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130286146 130286146 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS8 11095 hgsc.bcm.edu 37 11 130278689 130278689 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTS9 56999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 64579996 64579996 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS9 56999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 64589693 64589693 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS9 56999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 64619448 64619448 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTS9 56999 hgsc.bcm.edu 37 3 64607988 64607988 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTSL1 92949 broad.mit.edu 37 9 18684860 18684860 + Intron SNP T G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTSL1 92949 hgsc.bcm.edu 37 9 18906804 18906804 + Silent SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTSL2 9719 broad.mit.edu;ucsc.edu 37 9 136412244 136412244 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTSL3 57188 broad.mit.edu 37 15 84707098 84707098 + 3'UTR DEL G - - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTSL3 57188 hgsc.bcm.edu 37 15 84705613 84705614 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAMTSL3 57188 hgsc.bcm.edu;ucsc.edu 37 15 84651469 84651469 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTSL4 54507 hgsc.bcm.edu;ucsc.edu 37 1 150531786 150531786 + Silent SNP C C A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAMTSL5 339366 broad.mit.edu 37 19 1508023 1508023 + Frame_Shift_Del DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTSL5 339366 broad.mit.edu 37 19 1508092 1508092 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTSL5 339366 broad.mit.edu 37 19 1508527 1508527 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADAMTSL5 339366 hgsc.bcm.edu 37 19 1507322 1507322 + Silent SNP C C T rs151178039 bycluster;byfrequency;by1000genomes TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAP1 11033 broad.mit.edu;hgsc.bcm.edu 37 7 944856 944856 + Intron SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAP1 11033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 939073 939073 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAP1 11033 hgsc.bcm.edu 37 7 975057 975057 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAP2 55803 hgsc.bcm.edu;ucsc.edu 37 17 29280378 29280378 + Intron SNP A A C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAR 103 broad.mit.edu;hgsc.bcm.edu 37 1 154569310 154569310 + Silent SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAR 103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154574192 154574192 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAR 103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154574246 154574246 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAR 103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154574687 154574687 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAR 103 hgsc.bcm.edu;ucsc.edu 37 1 154574162 154574162 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADARB1 104 broad.mit.edu 37 21 46644986 46644990 + 3'UTR DEL TTGTT - - rs144123571 bycluster;by1000genomes TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 TTGTT TTGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADARB1 104 broad.mit.edu 37 21 46644986 46644990 + 3'UTR DEL TTGTT - - rs144123571 bycluster;by1000genomes TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 TTGTT TTGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADARB1 104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46642103 46642103 + Silent SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADARB2 105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 1229304 1229304 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAR(dist=13948) 0 hgsc.bcm.edu;ucsc.edu 37 1 154614404 154614404 + IGR SNP C C A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAT2 134637 hgsc.bcm.edu;ucsc.edu 37 6 143749738 143749738 + Intron SNP A A T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADAT3 113179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1913029 1913029 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADAT3 113179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1913030 1913030 + Silent SNP G G T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADC 113451 broad.mit.edu 37 1 33583873 33583873 + Intron DEL G - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADC 113451 hgsc.bcm.edu 37 1 33583668 33583669 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCK1 57143 broad.mit.edu 37 14 78397896 78397896 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCK1 57143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78365584 78365584 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCK2 90956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 140373652 140373652 + Silent SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCK2 90956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 140387007 140387007 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCK3 56997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227171879 227171879 + Silent SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCK3 56997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227174152 227174152 + Splice_Site SNP A A T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCK5 203054 broad.mit.edu 37 8 145617535 145617549 + Splice_Site DEL GGGGGTGCAAGGTGA - - rs11270020 unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 GGGGGTGCAAGGTGA GGGGGTGCAAGGTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY10 55811 hgsc.bcm.edu;ucsc.edu 37 1 167829063 167829063 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY1 107 broad.mit.edu 37 7 45755956 45755956 + 3'UTR DEL C - - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY1 107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 45725770 45725770 + Silent SNP G G A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY1 107 hgsc.bcm.edu 37 7 45697340 45697340 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY2 108 broad.mit.edu 37 5 7654098 7654100 + Intron DEL AGA - - rs111644211 bycluster;by1000genomes TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY2 108 broad.mit.edu;ucsc.edu 37 5 7626320 7626320 + Missense_Mutation SNP C T T rs188113151 by1000genomes TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY2 108 hgsc.bcm.edu 37 5 7706890 7706890 + Silent SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY2 108 hgsc.bcm.edu 37 5 7706890 7706890 + Silent SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY2 108 hgsc.bcm.edu 37 5 7757684 7757715 + Frame_Shift_Del DEL GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY2 108 hgsc.bcm.edu;ucsc.edu 37 5 7706858 7706858 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY3 109 broad.mit.edu;ucsc.edu 37 2 25050900 25050900 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY3 109 hgsc.bcm.edu 37 2 25061418 25061419 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY3 109 hgsc.bcm.edu 37 2 25141268 25141268 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY4 196883 broad.mit.edu;hgsc.bcm.edu 37 14 24801009 24801009 + Silent SNP G G C rs146843899 byfrequency;alternate_allele TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY5 111 broad.mit.edu 37 3 123049743 123049743 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY5 111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123005537 123005537 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY5 111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123044195 123044195 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY5 111 hgsc.bcm.edu;ucsc.edu 37 3 123030044 123030044 + Intron SNP A A T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY6 112 broad.mit.edu 37 12 49162165 49162166 + 3'UTR DEL CA - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADCY6 112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49167327 49167327 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY7 113 hgsc.bcm.edu 37 16 50340985 50340986 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY8 114 broad.mit.edu;hgsc.bcm.edu 37 8 131880119 131880119 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY8 114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 131896886 131896886 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY8 114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 131916170 131916170 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY8 114 hgsc.bcm.edu 37 8 131916200 131916200 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY8 114 hgsc.bcm.edu;ucsc.edu 37 8 131796014 131796014 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY8 114 hgsc.bcm.edu;ucsc.edu 37 8 131848556 131848556 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCY9 115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4033433 4033433 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY9 115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4043480 4043480 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY9 115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4043482 4043482 + Silent SNP A A T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCY9 115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4165079 4165079 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADCYAP1R1 117 hgsc.bcm.edu;ucsc.edu 37 7 31121334 31121334 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADCYAP1R1 117 hgsc.bcm.edu;ucsc.edu 37 7 31142950 31142959 + Frame_Shift_Del DEL CGTGTTTGAG CGTGTTTGAG - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 CGTGTTTGAG CGTGTTTGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADD1 118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2906737 2906737 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADD1 118 hgsc.bcm.edu 37 4 2900254 2900254 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADD2 119 hgsc.bcm.edu 37 2 70917963 70917963 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADD2 119 hgsc.bcm.edu 37 2 70933488 70933489 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADD3 120 broad.mit.edu 37 10 111860410 111860410 + 5'UTR SNP A G G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADD3 120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 111877147 111877147 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADH1A 124 hgsc.bcm.edu 37 4 100205662 100205662 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADH1A 124 hgsc.bcm.edu 37 4 100205662 100205662 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADH1A 124 hgsc.bcm.edu;ucsc.edu 37 4 100205772 100205772 + Silent SNP T T G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADH1B 125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 100232771 100232771 + Missense_Mutation SNP C C T rs140683864 unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADH1B 125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 100239948 100239948 + Silent SNP G G C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADH4 127 hgsc.bcm.edu;ucsc.edu 37 4 100047771 100047771 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADH5 128 broad.mit.edu 37 4 99996377 99996377 + Intron DEL T - - rs112636325 unknown;alternate_allele TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADH5 128 broad.mit.edu 37 4 99996377 99996377 + Intron DEL T - - rs112636325 unknown;alternate_allele TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADH5 128 broad.mit.edu 37 4 99996377 99996377 + Intron DEL T - - rs112636325 unknown;alternate_allele TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADH5 128 broad.mit.edu;hgsc.bcm.edu 37 4 99997942 99997942 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADH5 128 broad.mit.edu;ucsc.edu 37 4 100009871 100009871 + 5'UTR SNP C G G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADH6 130 broad.mit.edu;hgsc.bcm.edu 37 4 100125313 100125313 + 3'UTR SNP A A T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADHFE1 137872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67357547 67357547 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADHFE1 137872 hgsc.bcm.edu 37 8 67380563 67380563 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADI1 55256 hgsc.bcm.edu 37 2 3504658 3504658 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADIG 149685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37214721 37214721 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADK 132 broad.mit.edu 37 10 75936548 75936548 + Intron SNP A G G novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADM2 79924 broad.mit.edu 37 22 50921276 50921276 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADNP2 22850 broad.mit.edu 37 18 77896713 77896713 + 3'UTR SNP A C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADNP2 22850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 77894266 77894266 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADNP2 22850 hgsc.bcm.edu;ucsc.edu 37 18 77894041 77894041 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID ADORA2A 135 broad.mit.edu 37 22 24837536 24837537 + 3'UTR DEL AG - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADORA2A 135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24829496 24829496 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADORA2B 136 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15848766 15848766 + Silent SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADORA2B 136 hgsc.bcm.edu 37 17 15878585 15878585 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADORA3 140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112031474 112031474 + Silent SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADORA3 140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112042773 112042773 + Silent SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADORA3 140 hgsc.bcm.edu;ucsc.edu 37 1 112042593 112042593 + Silent SNP G G A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADPRHL1 113622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114107552 114107552 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRA1A 148 broad.mit.edu 37 8 26724687 26724687 + 5'Flank DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADRA1A 148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 26722260 26722260 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRA1A 148 hgsc.bcm.edu;ucsc.edu 37 8 26614238 26614238 + Intron SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADRA2B 151 hgsc.bcm.edu 37 2 96780986 96780987 + In_Frame_Ins INS - - TCCTCCTCT rs34667759 bycluster;by1000genomes TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRA2B 151 hgsc.bcm.edu 37 2 96780986 96780987 + In_Frame_Ins INS - - TCCTCCTCT rs34667759 bycluster;by1000genomes TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRB2 154 broad.mit.edu 37 5 148207792 148207793 + 3'UTR DEL AA - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADRB2 154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148207220 148207220 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRB2 154 hgsc.bcm.edu;ucsc.edu 37 5 148207202 148207202 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRBK1 156 broad.mit.edu 37 11 67034245 67034246 + Frame_Shift_Del DEL CG - - novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADRBK1 156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67050628 67050628 + Silent SNP T T C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRBK2 157 broad.mit.edu 37 22 26119932 26119932 + 3'UTR DEL T - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADRBK2 157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26114290 26114290 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADRM1 11047 hgsc.bcm.edu;ucsc.edu 37 20 60883769 60883770 + In_Frame_Ins INS - - GACACGAAG novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADSL 158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40742592 40742592 + Silent SNP C C G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADSL 158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40742638 40742638 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADSS 159 broad.mit.edu 37 1 244572632 244572633 + 3'UTR INS - A A rs76040005 bycluster;by1000genomes TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ADSSL1 122622 broad.mit.edu;hgsc.bcm.edu 37 14 105196283 105196283 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ADSSL1 122622 hgsc.bcm.edu 37 14 105206172 105206172 + Intron SNP T T A rs71421880 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ADSSL1 122622 hgsc.bcm.edu 37 14 105207040 105207040 + Silent SNP C C T rs12894569 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AEBP1 165 broad.mit.edu 37 7 44147521 44147521 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AEBP1 165 broad.mit.edu 37 7 44152266 44152266 + Missense_Mutation SNP C T T rs144799697 byfrequency TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AEBP1 165 hgsc.bcm.edu 37 7 44153693 44153693 + Missense_Mutation SNP A A G rs140163558 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AEBP1 165 hgsc.bcm.edu 37 7 44153704 44153704 + Silent SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AEBP1 165 hgsc.bcm.edu;ucsc.edu 37 7 44152202 44152202 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AEBP1 165 hgsc.bcm.edu;ucsc.edu 37 7 44153688 44153688 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AEBP1 165 hgsc.bcm.edu;ucsc.edu 37 7 44153696 44153696 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AEBP2 121536 broad.mit.edu 37 12 19593226 19593226 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AES 166 broad.mit.edu 37 19 3054430 3054430 + Intron DEL A - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AES 166 broad.mit.edu 37 19 3056393 3056393 + Intron SNP T G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFAP1 60312 broad.mit.edu 37 4 7776866 7776866 + Intron DEL A - - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFAP1 60312 broad.mit.edu 37 4 7780467 7780467 + Intron SNP A G G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFAP1 60312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 7783208 7783208 + Silent SNP C C A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFAP1L1 134265 broad.mit.edu;hgsc.bcm.edu 37 5 148685923 148685923 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFAP1L1 134265 hgsc.bcm.edu 37 5 148685872 148685872 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFAP1L1 134265 hgsc.bcm.edu 37 5 148685879 148685879 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFAP1L1 134265 hgsc.bcm.edu 37 5 148719610 148719610 + 3'UTR SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFAP1L1 134265 hgsc.bcm.edu;ucsc.edu 37 5 148680717 148680717 + Missense_Mutation SNP G G A rs61734415 bycluster;byfrequency;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFAP1L2 84632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116082996 116082996 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFAP1L2 84632 hgsc.bcm.edu 37 10 116057098 116057098 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFAP1L2 84632 hgsc.bcm.edu;ucsc.edu 37 10 116075322 116075322 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF1 4299 hgsc.bcm.edu;ucsc.edu 37 4 88029314 88029314 + Silent SNP T T C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFF1 4299 hgsc.bcm.edu;ucsc.edu 37 4 88029399 88029399 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF1 4299 hgsc.bcm.edu;ucsc.edu 37 4 88053496 88053496 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFF2 2334 broad.mit.edu 37 X 147582558 147582558 + 5'UTR SNP G T T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFF2 2334 broad.mit.edu 37 X 148080912 148080912 + 3'UTR DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFF2 2334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148035250 148035250 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF2 2334 broad.mit.edu;ucsc.edu 37 X 148037884 148037884 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFF2 2334 hgsc.bcm.edu 37 X 148055112 148055112 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFF2 2334 hgsc.bcm.edu;ucsc.edu 37 X 147891376 147891376 + Intron SNP T T A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF2 2334 hgsc.bcm.edu;ucsc.edu 37 X 148037494 148037494 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFF3 3899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 100199360 100199360 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF3 3899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 100623119 100623119 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF3 3899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 100625302 100625302 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF3 3899 broad.mit.edu;ucsc.edu 37 2 100210335 100210340 + In_Frame_Del DEL GGCTGA - - novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 GGCTGA GGCTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFF3 3899 hgsc.bcm.edu 37 2 100210335 100210340 + In_Frame_Del DEL GGCTGA GGCTGA - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 GGCTGA GGCTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF3 3899 hgsc.bcm.edu 37 2 100623382 100623382 + Silent SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFF3 3899 hgsc.bcm.edu;ucsc.edu 37 2 100210705 100210705 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF3 3899 hgsc.bcm.edu;ucsc.edu 37 2 100343530 100343530 + Intron SNP G G C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF4 27125 broad.mit.edu 37 5 132216688 132216688 + 3'UTR SNP T G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AFF4 27125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132228042 132228042 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF4 27125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132270528 132270528 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFF4 27125 hgsc.bcm.edu 37 5 132270357 132270358 + In_Frame_Ins INS - - GCT novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFG3L1 0 hgsc.bcm.edu;ucsc.edu 37 16 90057351 90057351 + 5'UTR SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFG3L2 10939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 12367034 12367034 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFG3L2 10939 hgsc.bcm.edu;ucsc.edu 37 18 12337401 12337401 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFP 174 hgsc.bcm.edu;ucsc.edu 37 4 74316336 74316336 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AFTPH 54812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64779884 64779884 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFTPH 54812 hgsc.bcm.edu;ucsc.edu 37 2 64779745 64779769 + Frame_Shift_Del DEL AGTTGGTTCTCCCAAAGAAGAAAGT AGTTGGTTCTCCCAAAGAAGAAAGT - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 AGTTGGTTCTCCCAAAGAAGAAAGT AGTTGGTTCTCCCAAAGAAGAAAGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AFTPH 54812 hgsc.bcm.edu;ucsc.edu 37 2 64808374 64808374 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGA 175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 178352921 178352921 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGA 175 broad.mit.edu;ucsc.edu 37 4 178357480 178357480 + Silent SNP T A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP1 116987 broad.mit.edu 37 2 237032937 237032937 + 3'UTR DEL C - - rs144806054 bycluster;by1000genomes TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP1 116987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 236706509 236706509 + Silent SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP2 116986 hgsc.bcm.edu;ucsc.edu 37 12 58126199 58126199 + Missense_Mutation SNP G G A rs138992134 unknown;alternate_allele TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP3 116988 broad.mit.edu 37 7 150825758 150825758 + Missense_Mutation SNP A C C novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP3 116988 broad.mit.edu;hgsc.bcm.edu 37 7 150784022 150784022 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP4 119016 hgsc.bcm.edu 37 10 46342585 46342585 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP5 729092 broad.mit.edu 37 10 75487058 75487058 + 5'UTR SNP G A A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP6 414189 broad.mit.edu 37 10 51748381 51748381 + 5'UTR SNP T C C novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP6 414189 broad.mit.edu 37 10 51769499 51769499 + Silent SNP C T T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP6 414189 broad.mit.edu 37 10 51769940 51769940 + Silent SNP T C C rs4043127 unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGAP6 414189 hgsc.bcm.edu 37 10 51748682 51748682 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP6 414189 hgsc.bcm.edu 37 10 51748682 51748682 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP6 414189 hgsc.bcm.edu 37 10 51748684 51748684 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP6 414189 hgsc.bcm.edu 37 10 51768675 51768676 + Frame_Shift_Del DEL AA AA - rs113234838 unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP7 653268 broad.mit.edu;hgsc.bcm.edu 37 10 51464817 51464817 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP7 653268 hgsc.bcm.edu 37 10 51485991 51485991 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGAP7 653268 hgsc.bcm.edu 37 10 51485991 51485991 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGBL1 123624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86838616 86838616 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGBL1 123624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86940775 86940775 + Silent SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGBL1 123624 broad.mit.edu;ucsc.edu 37 15 87066159 87066159 + Silent SNP C A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGBL1 123624 hgsc.bcm.edu;ucsc.edu 37 15 86809654 86809654 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGBL2 79841 broad.mit.edu;ucsc.edu 37 11 47713657 47713657 + Silent SNP T C C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGBL3 340351 hgsc.bcm.edu;ucsc.edu 37 7 134722286 134722286 + Silent SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGFG1 3267 broad.mit.edu 37 2 228419271 228419271 + 3'UTR SNP T A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGFG1 3267 hgsc.bcm.edu 37 2 228395821 228395821 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGFG1 3267 hgsc.bcm.edu 37 2 228398468 228398468 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGFG1 3267 hgsc.bcm.edu;ucsc.edu 37 2 228398343 228398343 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGFG2 3268 broad.mit.edu 37 7 100137100 100137101 + Frame_Shift_Ins INS - C C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGFG2 3268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100160277 100160277 + Silent SNP C C T rs146791629 unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGGF1 55109 broad.mit.edu 37 5 76348572 76348572 + Silent SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGGF1 55109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 76342255 76342255 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGK 55750 hgsc.bcm.edu 37 7 141341644 141341644 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGK 55750 hgsc.bcm.edu;ucsc.edu 37 7 141255279 141255279 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGK 55750 hgsc.bcm.edu;ucsc.edu 37 7 141255283 141255283 + Missense_Mutation SNP A A T rs148294392 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGK 55750 hgsc.bcm.edu;ucsc.edu 37 7 141336815 141336815 + Nonsense_Mutation SNP A A T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGK 55750 hgsc.bcm.edu;ucsc.edu 37 7 141352681 141352681 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGL 178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100336085 100336085 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGL 178 broad.mit.edu;ucsc.edu 37 1 100368332 100368332 + Missense_Mutation SNP C G G rs113994131 unknown;alternate_allele TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGL 178 hgsc.bcm.edu;ucsc.edu 37 1 100336394 100336394 + Silent SNP G G A rs181804327 by1000genomes TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGL 178 hgsc.bcm.edu;ucsc.edu 37 1 100343224 100343225 + Frame_Shift_Ins INS - - TA novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGL 178 hgsc.bcm.edu;ucsc.edu 37 1 100349949 100349949 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGMAT 79814 broad.mit.edu 37 1 15899935 15899935 + 3'UTR DEL T - - rs111577791 unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGMAT 79814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 15909873 15909873 + Missense_Mutation SNP A A G rs148899500 unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGMAT 79814 hgsc.bcm.edu;ucsc.edu 37 1 15905364 15905364 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGPAT2 10555 hgsc.bcm.edu 37 9 139568309 139568309 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGPAT4 56895 broad.mit.edu 37 6 161557384 161557384 + 3'UTR DEL A - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGPAT5 55326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 6612685 6612685 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGPAT5 55326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 6614716 6614716 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGPAT5 55326 hgsc.bcm.edu 37 8 6588326 6588326 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGPAT6 137964 broad.mit.edu 37 8 41479074 41479076 + 3'UTR DEL TGC - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TGC TGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGPAT6 137964 hgsc.bcm.edu;ucsc.edu 37 8 41476308 41476308 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGPAT9 84803 hgsc.bcm.edu;ucsc.edu 37 4 84465758 84465758 + Splice_Region SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGPS 8540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178326666 178326666 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGRN 375790 broad.mit.edu 37 1 985094 985094 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGRN 375790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 970662 970662 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGRN 375790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 981443 981443 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGRN 375790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 985343 985343 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGRN 375790 hgsc.bcm.edu;ucsc.edu 37 1 970652 970652 + Splice_Region SNP T T C novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGRN 375790 hgsc.bcm.edu;ucsc.edu 37 1 979247 979251 + Frame_Shift_Del DEL GCAGG GCAGG - novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 GCAGG GCAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGT 183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230839961 230839961 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGTPBP1 23287 broad.mit.edu 37 9 88258051 88258052 + Intron DEL TA - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGTPBP1 23287 broad.mit.edu 37 9 88258051 88258052 + Intron DEL TA - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGTPBP1 23287 broad.mit.edu;hgsc.bcm.edu 37 9 88193989 88193989 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGTPBP1 23287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88207597 88207597 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGTR1 185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 148459496 148459496 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGTRAP 57085 broad.mit.edu 37 1 11810282 11810282 + 3'UTR SNP G T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGXT 189 broad.mit.edu 37 2 241816834 241816834 + Intron SNP T C C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGXT 189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241808356 241808356 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGXT2 64902 broad.mit.edu 37 5 35026017 35026017 + Intron SNP T C C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AGXT2 64902 hgsc.bcm.edu;ucsc.edu 37 5 35025932 35025932 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGXT2L1 64850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109667938 109667938 + Silent SNP T T C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGXT2L1 64850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109669293 109669293 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGXT2L1 64850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109681436 109681436 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AGXT2L1 64850 hgsc.bcm.edu 37 4 109677614 109677614 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGXT2L1 64850 hgsc.bcm.edu;ucsc.edu 37 4 109672084 109672084 + Splice_Region SNP G G C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AGXT2L2 85007 hgsc.bcm.edu 37 5 177649405 177649406 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHCTF1 25909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247061603 247061603 + Silent SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHCTF1 25909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247081660 247081660 + Silent SNP T T G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHCYL1 10768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110553967 110553967 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHCYL1 10768 hgsc.bcm.edu;ucsc.edu 37 1 110553923 110553923 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHCYL2 23382 broad.mit.edu 37 7 128865042 128865042 + Frame_Shift_Del DEL C - - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AHCYL2 23382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129045730 129045730 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHCYL2 23382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129064971 129064971 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHDC1 27245 broad.mit.edu 37 1 27874970 27874970 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AHDC1 27245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27874262 27874262 + Silent SNP G G A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHDC1 27245 broad.mit.edu;ucsc.edu 37 1 27874531 27874531 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AHI1 54806 hgsc.bcm.edu;ucsc.edu 37 6 135644325 135644325 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHNAK2 113146 broad.mit.edu 37 14 105413709 105413709 + Silent SNP G T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu 37 14 105410662 105410662 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu 37 14 105414503 105414503 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu 37 14 105414746 105414746 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105416511 105416511 + Silent SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105418040 105418040 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105418731 105418731 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 broad.mit.edu;ucsc.edu 37 14 105420074 105420074 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AHNAK2 113146 hgsc.bcm.edu 37 14 105405419 105405419 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHNAK2 113146 hgsc.bcm.edu 37 14 105406727 105406727 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHNAK2 113146 hgsc.bcm.edu 37 14 105408995 105408995 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHNAK2 113146 hgsc.bcm.edu 37 14 105412138 105412138 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105412554 105412554 + Silent SNP T T G rs12436986 bycluster;byhapmap;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105415541 105415541 + Missense_Mutation SNP T T C rs150617757 by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105415666 105415666 + Missense_Mutation SNP G G A rs150446570 unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105415748 105415748 + Missense_Mutation SNP G G A rs118171013 byfrequency;by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHNAK2 113146 hgsc.bcm.edu 37 14 105416254 105416254 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105416255 105416255 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105416367 105416367 + Silent SNP A A C rs34605366 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105416838 105416838 + Silent SNP C C A rs180896416 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105416839 105416839 + Missense_Mutation SNP G G T rs145693791 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105418155 105418155 + Silent SNP G G C rs141600524 by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105418458 105418458 + Frame_Shift_Del DEL C C - rs72332824 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu 37 14 105419047 105419047 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK2 113146 hgsc.bcm.edu;ucsc.edu 37 14 105412554 105412554 + Silent SNP T T G rs12436986 bycluster;byhapmap;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 broad.mit.edu;hgsc.bcm.edu 37 11 62288165 62288165 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 broad.mit.edu;hgsc.bcm.edu 37 11 62290074 62290074 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 broad.mit.edu;hgsc.bcm.edu 37 11 62295513 62295513 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62296732 62296732 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62297275 62297275 + Silent SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62300776 62300776 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 hgsc.bcm.edu 37 11 62296231 62296231 + Silent SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 hgsc.bcm.edu 37 11 62303555 62303556 + In_Frame_Ins INS - - CTC novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHNAK 79026 hgsc.bcm.edu 37 11 62303555 62303556 + In_Frame_Ins INS - - CTC novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHNAK 79026 hgsc.bcm.edu;ucsc.edu 37 11 62287670 62287670 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHR 196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 17379447 17379448 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHR 196 hgsc.bcm.edu;ucsc.edu 37 7 17378783 17378783 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHR 196 hgsc.bcm.edu;ucsc.edu 37 7 17382681 17382681 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHRR 57491 hgsc.bcm.edu 37 5 413518 413518 + Silent SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHRR 57491 hgsc.bcm.edu;ucsc.edu 37 5 413518 413518 + Silent SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHSA1 10598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77929008 77929008 + Silent SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHSA1 10598 hgsc.bcm.edu;ucsc.edu 37 14 77935550 77935550 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AHSA2 130872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61413601 61413601 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AHSG 197 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186335070 186335070 + Silent SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AICDA 57379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 8758017 8758017 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIDA 64853 broad.mit.edu 37 1 222843058 222843059 + 3'UTR DEL GT - - rs35161441 unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AIDA 64853 hgsc.bcm.edu 37 1 222843559 222843559 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AIDA 64853 hgsc.bcm.edu 37 1 222843559 222843559 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129265667 129265667 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129265759 129265759 + Silent SNP G G A rs146608893 unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129289191 129289191 + Silent SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129290574 129290574 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIFM1 9131 hgsc.bcm.edu 37 X 129270128 129270129 + Frame_Shift_Ins INS - - C novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIFM2 84883 broad.mit.edu 37 10 71873765 71873766 + Intron DEL CT - - novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AIFM2 84883 broad.mit.edu 37 10 71874016 71874016 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AIFM3 150209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21331018 21331018 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIFM3 150209 hgsc.bcm.edu 37 22 21332205 21332205 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AIFM3 150209 hgsc.bcm.edu;ucsc.edu 37 22 21331182 21331182 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AIFM3 150209 hgsc.bcm.edu;ucsc.edu 37 22 21332000 21332000 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AIM1 202 broad.mit.edu;hgsc.bcm.edu 37 6 106987378 106987378 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AIM1 202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 106968602 106968602 + Silent SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AIM1 202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 107009363 107009363 + Silent SNP T T C novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIM1 202 hgsc.bcm.edu;ucsc.edu 37 6 107011654 107011655 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIM1L 55057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26663759 26663759 + Silent SNP G G A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIM1L 55057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26664087 26664087 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIM1L 55057 hgsc.bcm.edu 37 1 26672402 26672403 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIM1L 55057 hgsc.bcm.edu 37 1 26673138 26673139 + In_Frame_Ins INS - - CCT novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIM1L 55057 hgsc.bcm.edu;ucsc.edu 37 1 26650663 26650663 + Missense_Mutation SNP C C T rs189284478 by1000genomes TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIMP1 9255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 107252948 107252948 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIMP2 7965 hgsc.bcm.edu;ucsc.edu 37 7 6063124 6063124 + Silent SNP T T A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AIPL1 23746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6331788 6331788 + Silent SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIRE 326 broad.mit.edu 37 21 45710555 45710556 + Intron INS - C C novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AIRE 326 hgsc.bcm.edu 37 21 45711063 45711075 + Frame_Shift_Del DEL GCCTGTCCCCTCC GCCTGTCCCCTCC - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 GCCTGTCCCCTCC GCCTGTCCCCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AIRE 326 hgsc.bcm.edu 37 21 45717550 45717550 + Silent SNP T T C rs1133779 bycluster;byfrequency;by1000genomes TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AJAP1 55966 hgsc.bcm.edu 37 1 4772582 4772583 + In_Frame_Ins INS - - CCA novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AK2 204 broad.mit.edu 37 1 33476292 33476292 + 3'UTR SNP A G G rs74066439 bycluster;byfrequency TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AK2 204 broad.mit.edu 37 1 33476292 33476292 + 3'UTR SNP A G G rs74066439 bycluster;byfrequency TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AK2 204 broad.mit.edu 37 1 33476303 33476303 + 3'UTR SNP G C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AK2 204 broad.mit.edu 37 1 33476353 33476353 + 3'UTR SNP C T T rs66599471 bycluster TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AK2 204 broad.mit.edu 37 1 33476353 33476353 + 3'UTR SNP C T T rs66599471 bycluster TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AK2 204 broad.mit.edu 37 1 33476353 33476353 + 3'UTR SNP C T T rs66599471 bycluster TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AK2 204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33487201 33487201 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AK2 204 hgsc.bcm.edu 37 1 33478920 33478920 + Silent SNP G G A rs111261425 bycluster;byfrequency TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AK2 204 hgsc.bcm.edu;ucsc.edu 37 1 33476404 33476404 + RNA SNP T T G rs76230073 bycluster TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AK5 26289 hgsc.bcm.edu 37 1 77759516 77759516 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AK7 122481 broad.mit.edu;hgsc.bcm.edu 37 14 96858459 96858459 + 5'UTR SNP G G C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AK7 122481 hgsc.bcm.edu 37 14 96949471 96949472 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AK8 158067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135602886 135602886 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP10 11216 broad.mit.edu 37 17 19809465 19809465 + 3'UTR SNP T G G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP10 11216 broad.mit.edu 37 17 19809465 19809465 + 3'UTR SNP T G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP11 11215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42891796 42891796 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP11 11215 hgsc.bcm.edu;ucsc.edu 37 13 42875949 42875949 + Silent SNP C C T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP12 9590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151670459 151670459 + Silent SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP12 9590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151671390 151671390 + Missense_Mutation SNP C C A rs143476871 unknown;alternate_allele TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP12 9590 hgsc.bcm.edu 37 6 151626918 151626918 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP12 9590 hgsc.bcm.edu;ucsc.edu 37 6 151670340 151670340 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP13 11214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86123604 86123604 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP13 11214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86123644 86123644 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP13 11214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86279333 86279333 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP13 11214 broad.mit.edu;ucsc.edu 37 15 86118435 86118435 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP13 11214 hgsc.bcm.edu 37 15 86123926 86123926 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP13 11214 hgsc.bcm.edu;ucsc.edu 37 15 86198698 86198698 + Silent SNP C C T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP13 11214 hgsc.bcm.edu;ucsc.edu 37 15 86251242 86251242 + Splice_Region SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP17A 8227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1712782 1712782 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP17A 8227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1712876 1712876 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP17A 8227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1713017 1713017 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP1 8165 broad.mit.edu 37 17 55197932 55197932 + 3'UTR DEL A - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP1 8165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 55184285 55184285 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP1 8165 hgsc.bcm.edu 37 17 55183751 55183771 + In_Frame_Del DEL GCTTGGATAGAAATGAGGAGG GCTTGGATAGAAATGAGGAGG - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 GCTTGGATAGAAATGAGGAGG GCTTGGATAGAAATGAGGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP1 8165 hgsc.bcm.edu 37 17 55183771 55183771 + Missense_Mutation SNP G G A rs138803240 byfrequency TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP1 8165 hgsc.bcm.edu 37 17 55184151 55184151 + Silent SNP T T C novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP2 11217 hgsc.bcm.edu 37 9 112900341 112900342 + In_Frame_Ins INS - - GAAGCT novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP2 11217 hgsc.bcm.edu 37 9 112900341 112900342 + In_Frame_Ins INS - - GAAGCT novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP2 11217 hgsc.bcm.edu 37 9 112900482 112900483 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP2 11217 hgsc.bcm.edu 37 9 112900482 112900483 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP2 11217 hgsc.bcm.edu;ucsc.edu 37 9 112924365 112924365 + Intron SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP3 10566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4747326 4747326 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP4 8852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49957227 49957227 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP4 8852 hgsc.bcm.edu 37 X 49957702 49957702 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP4 8852 hgsc.bcm.edu;ucsc.edu 37 X 49957015 49957015 + Silent SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP4 8852 hgsc.bcm.edu;ucsc.edu 37 X 49963344 49963344 + Silent SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP6 9472 broad.mit.edu 37 14 32902689 32902689 + 5'UTR SNP T A A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP6 9472 broad.mit.edu 37 14 33243070 33243070 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP6 9472 broad.mit.edu;hgsc.bcm.edu 37 14 33294008 33294008 + 3'UTR SNP C C A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP6 9472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 33068660 33068660 + Silent SNP T T A rs144892695 unknown;alternate_allele TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP6 9472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 33292027 33292027 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP6 9472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 33292028 33292028 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP6 9472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 33292170 33292170 + Silent SNP G G C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP6 9472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 33293956 33293956 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP7 9465 broad.mit.edu 37 6 131603070 131603071 + 3'UTR INS - TTAAT TTAAT novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP7 9465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131540937 131540937 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP8 10270 broad.mit.edu;ucsc.edu 37 19 15465831 15465831 + Silent SNP T C C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP8 10270 hgsc.bcm.edu;ucsc.edu 37 19 15482818 15482818 + Intron SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP8L 26993 broad.mit.edu 37 19 15511221 15511221 + Intron SNP A T T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP8L 26993 broad.mit.edu;hgsc.bcm.edu 37 19 15491165 15491165 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP8L 26993 hgsc.bcm.edu;ucsc.edu 37 19 15511126 15511126 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP8L 26993 hgsc.bcm.edu;ucsc.edu 37 19 15511799 15511799 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKAP9 10142 broad.mit.edu 37 7 91670307 91670307 + Intron SNP A T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP9 10142 broad.mit.edu 37 7 91670309 91670309 + Intron SNP G T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP9 10142 broad.mit.edu 37 7 91670309 91670309 + Intron SNP G T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP9 10142 broad.mit.edu 37 7 91739549 91739549 + 3'UTR SNP G T T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91631974 91631974 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91632376 91632376 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91668040 91668040 + Nonsense_Mutation SNP C C G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91709305 91709305 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91712684 91712684 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91736718 91736718 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq AKAP9 10142 hgsc.bcm.edu 37 7 91652178 91652179 + In_Frame_Ins INS - - AAC rs10644111 bycluster;by1000genomes TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP9 10142 hgsc.bcm.edu 37 7 91700229 91700229 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID AKAP9 10142 hgsc.bcm.edu;ucsc.edu 37 7 91630212 91630212 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP9 10142 hgsc.bcm.edu;ucsc.edu 37 7 91708532 91708532 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP9 10142 hgsc.bcm.edu;ucsc.edu 37 7 91722542 91722542 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKAP9 10142 hgsc.bcm.edu;ucsc.edu 37 7 91724470 91724470 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKD1 221264 hgsc.bcm.edu 37 6 109906330 109906332 + In_Frame_Del DEL CTT CTT - rs72285221 bycluster;by1000genomes TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKD1 221264 hgsc.bcm.edu 37 6 109935484 109935484 + Intron SNP G G A rs75714660 byfrequency;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKNA 80709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117106062 117106062 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKNA 80709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117139683 117139683 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKNA 80709 broad.mit.edu;ucsc.edu 37 9 117139678 117139678 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKNA 80709 hgsc.bcm.edu;ucsc.edu 37 9 117130825 117130825 + Silent SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKNAD1 254268 broad.mit.edu;hgsc.bcm.edu 37 1 109369917 109369917 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKNAD1 254268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109366227 109366227 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B10 57016 broad.mit.edu 37 7 134212563 134212563 + 5'UTR SNP A G G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKR1B10 57016 broad.mit.edu 37 7 134212620 134212620 + Translation_Start_Site SNP G A A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKR1B10 57016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134221461 134221461 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B10 57016 hgsc.bcm.edu;ucsc.edu 37 7 134222410 134222410 + Silent SNP C C T rs61735101 bycluster;byfrequency;by1000genomes TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B1 231 broad.mit.edu 37 7 134132285 134132285 + Intron SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKR1B1 231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134134487 134134487 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B1 231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134143812 134143812 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B1 231 hgsc.bcm.edu 37 7 134136494 134136494 + Silent SNP C C A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1B15 441282 broad.mit.edu;hgsc.bcm.edu 37 7 134254201 134254201 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B15 441282 broad.mit.edu;hgsc.bcm.edu 37 7 134261166 134261166 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B15 441282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134261744 134261744 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1B15 441282 hgsc.bcm.edu 37 7 134261183 134261183 + Splice_Site SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1C1 1645 broad.mit.edu 37 10 4995169 4995169 + 5'UTR DEL T - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKR1C1 1645 broad.mit.edu;hgsc.bcm.edu 37 10 5011032 5011032 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1C1 1645 hgsc.bcm.edu 37 10 5018132 5018132 + Splice_Region SNP A A G rs5001362 bycluster;byfrequency TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1C1 1645 hgsc.bcm.edu;ucsc.edu 37 10 5009193 5009193 + Silent SNP T T C rs11548049 bycluster;byfrequency TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1C2 1646 hgsc.bcm.edu 37 10 5034016 5034016 + Splice_Region SNP T T C rs5001362 bycluster;byfrequency TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1C2 1646 hgsc.bcm.edu 37 10 5034016 5034016 + Splice_Region SNP T T C rs5001362 bycluster;byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1C2 1646 hgsc.bcm.edu;ucsc.edu 37 10 5042784 5042784 + Silent SNP G G A rs13945 bycluster;byfrequency;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR1C3 8644 broad.mit.edu 37 10 5139882 5139882 + Intron SNP T C C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKR1D1 6718 broad.mit.edu;hgsc.bcm.edu 37 7 137791988 137791988 + Intron SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR1E2 83592 hgsc.bcm.edu;ucsc.edu 37 10 4873024 4873024 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR7A3 22977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19611597 19611597 + Silent SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKR7A3 22977 hgsc.bcm.edu 37 1 19612806 19612806 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR7L 246181 hgsc.bcm.edu 37 1 19595194 19595194 + Missense_Mutation SNP A A G rs75616155 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKR7L 246181 hgsc.bcm.edu 37 1 19597275 19597275 + Frame_Shift_Del DEL C C - rs140586925 unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKT1 207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105246482 105246482 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKT1 207 hgsc.bcm.edu;ucsc.edu 37 14 105246445 105246445 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID AKT1S1 84335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50374936 50374936 + Silent SNP G G A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKT2 208 broad.mit.edu 37 19 40740421 40740421 + Intron SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKT2 208 broad.mit.edu 37 19 40742001 40742001 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKT2 208 broad.mit.edu;hgsc.bcm.edu 37 19 40739535 40739535 + 3'UTR SNP A A G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKT2 208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40742002 40742002 + Missense_Mutation SNP C C G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKT2 208 hgsc.bcm.edu 37 19 40741045 40741045 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AKT2(dist=33967) 0 hgsc.bcm.edu 37 19 40825232 40825232 + IGR SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKT3 10000 broad.mit.edu 37 1 243859018 243859018 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AKT3 10000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 243859016 243859016 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AKTIP 64400 hgsc.bcm.edu;ucsc.edu 37 16 53529171 53529171 + Splice_Region SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALAD 210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116154422 116154422 + Silent SNP G G T rs116243288 byfrequency;alternate_allele TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALAS1 211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52233311 52233311 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALAS1 211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52236547 52236547 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALAS1 211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52246387 52246387 + Silent SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALAS1 211 hgsc.bcm.edu 37 3 52239907 52239907 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALAS1 211 hgsc.bcm.edu 37 3 52239907 52239907 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALAS2 212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55039931 55039931 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALAS2 212 hgsc.bcm.edu 37 X 55051156 55051156 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALAS2 212 hgsc.bcm.edu;ucsc.edu 37 X 55051164 55051164 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALB 213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 74283985 74283985 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALB 213 hgsc.bcm.edu;ucsc.edu 37 4 74283260 74283260 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALCAM 214 broad.mit.edu 37 3 105243461 105243461 + Intron SNP C A A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALCAM 214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 105266275 105266275 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALCAM 214 hgsc.bcm.edu;ucsc.edu 37 3 105269022 105269022 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH16A1 126133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49963012 49963012 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH16A1 126133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49972161 49972161 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH18A1 5832 broad.mit.edu 37 10 97366442 97366442 + 3'UTR SNP G C C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDH18A1 5832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97366699 97366699 + Silent SNP T T G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH18A1 5832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97373858 97373858 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH18A1 5832 hgsc.bcm.edu;ucsc.edu 37 10 97371065 97371065 + Silent SNP G G A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH1A1 216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 75540461 75540461 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1A1 216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 75555088 75555088 + Silent SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1A1 216 hgsc.bcm.edu;ucsc.edu 37 9 75545843 75545843 + Silent SNP T T C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1A2 8854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58257978 58257978 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1A3 220 broad.mit.edu 37 15 101434385 101434385 + Intron SNP G A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDH1A3 220 hgsc.bcm.edu 37 15 101440802 101440802 + Silent SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH1B1 219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 38395753 38395753 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1L1 10840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 125828895 125828895 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1L1 10840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 125854457 125854457 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH1L1 10840 hgsc.bcm.edu;ucsc.edu 37 3 125873226 125873226 + Intron SNP A A T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH2 217 broad.mit.edu;hgsc.bcm.edu 37 12 112221085 112221085 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH2 217 hgsc.bcm.edu 37 12 112228280 112228280 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH2 217 hgsc.bcm.edu 37 12 112229167 112229168 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH3A1 218 broad.mit.edu 37 17 19641666 19641666 + Silent SNP C T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDH3A2 224 hgsc.bcm.edu 37 17 19568312 19568312 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH3B1 221 broad.mit.edu;hgsc.bcm.edu 37 11 67789230 67789230 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH3B2 222 broad.mit.edu 37 11 67433825 67433825 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDH3B2 222 hgsc.bcm.edu;ucsc.edu 37 11 67431199 67431199 + Missense_Mutation SNP C C T rs180859869 by1000genomes TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH4A1 8659 broad.mit.edu 37 1 19199314 19199314 + 3'UTR SNP C A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDH4A1 8659 hgsc.bcm.edu 37 1 19212058 19212058 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH4A1 8659 hgsc.bcm.edu;ucsc.edu 37 1 19202926 19202926 + Silent SNP T T C rs2230706 bycluster;byfrequency;by1000genomes TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH5A1 7915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24528317 24528317 + Silent SNP T T C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH5A1 7915 hgsc.bcm.edu 37 6 24520670 24520670 + Silent SNP T T C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH6A1 4329 broad.mit.edu;hgsc.bcm.edu 37 14 74531621 74531621 + Silent SNP C C A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH6A1 4329 hgsc.bcm.edu 37 14 74539005 74539005 + Silent SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH7A1 501 broad.mit.edu 37 5 125896835 125896835 + Intron SNP T C C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDH7A1 501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 125891622 125891622 + Splice_Site SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH8A1 64577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 135253987 135253987 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH8A1 64577 hgsc.bcm.edu 37 6 135263586 135263586 + Missense_Mutation SNP C C A rs143707042 unknown;alternate_allele TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDH8A1 64577 hgsc.bcm.edu;ucsc.edu 37 6 135254009 135254009 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDH9A1 223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 165652237 165652237 + Silent SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDOA 226 broad.mit.edu 37 16 30081653 30081653 + 3'UTR SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDOA 226 hgsc.bcm.edu;ucsc.edu 37 16 30078964 30078964 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDOA 226 hgsc.bcm.edu;ucsc.edu 37 16 30080933 30080933 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALDOB 229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104187208 104187208 + Silent SNP G G A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDOB 229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104187311 104187312 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDOB 229 broad.mit.edu;ucsc.edu 37 9 104192184 104192184 + Silent SNP G A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALDOB 229 hgsc.bcm.edu;ucsc.edu 37 9 104190767 104190770 + Frame_Shift_Del DEL TTTG TTTG - novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 TTTG TTTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALDOB 229 hgsc.bcm.edu;ucsc.edu 37 9 104192206 104192207 + Frame_Shift_Ins INS - - TT novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG10 84920 broad.mit.edu 37 12 34175313 34175314 + 5'UTR INS - A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG10 84920 broad.mit.edu 37 12 34175342 34175342 + 5'UTR SNP C G G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG10 84920 broad.mit.edu;hgsc.bcm.edu 37 12 34178892 34178892 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG10 84920 hgsc.bcm.edu 37 12 34179315 34179315 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG10B 144245 broad.mit.edu;hgsc.bcm.edu 37 12 38714340 38714340 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG10B 144245 broad.mit.edu;ucsc.edu 37 12 38710783 38710783 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG12 79087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50303615 50303615 + Silent SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG12 79087 hgsc.bcm.edu 37 22 50297496 50297497 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG13 79868 broad.mit.edu 37 X 111003299 111003299 + 3'UTR SNP T C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG13 79868 broad.mit.edu;hgsc.bcm.edu 37 X 110987973 110987973 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG13 79868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 110964871 110964871 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG13 79868 hgsc.bcm.edu 37 X 110987996 110987996 + Silent SNP A A T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG13 79868 hgsc.bcm.edu;ucsc.edu 37 X 110951455 110951455 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG14 199857 hgsc.bcm.edu 37 1 95538419 95538419 + Silent SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALG14 199857 hgsc.bcm.edu 37 1 95538433 95538433 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALG1 56052 broad.mit.edu 37 16 5134982 5134982 + 3'UTR SNP G A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG1 56052 hgsc.bcm.edu 37 16 5128755 5128755 + Intron SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG2 85365 broad.mit.edu 37 9 101983421 101983421 + Intron SNP T C C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG3 10195 broad.mit.edu 37 3 183961713 183961713 + Silent SNP G T T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALG3 10195 hgsc.bcm.edu 37 3 183963025 183963025 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALG5 29880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37567752 37567752 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG6 29929 hgsc.bcm.edu;ucsc.edu 37 1 63902501 63902506 + In_Frame_Del DEL TCTCAG TCTCAG - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 TCTCAG TCTCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG8 79053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77812070 77812070 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG8 79053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77817939 77817939 + Silent SNP T T C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALG8 79053 hgsc.bcm.edu 37 11 77850613 77850613 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALK 238 broad.mit.edu;hgsc.bcm.edu 37 2 29416082 29416082 + 3'UTR SNP G G T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALK 238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29420425 29420425 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ALK 238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29455209 29455209 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALK 238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29462601 29462601 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALK 238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29917822 29917822 + Missense_Mutation SNP G G C rs56116528 unknown;alternate_allele TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALK 238 hgsc.bcm.edu 37 2 29443697 29443697 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALK 238 hgsc.bcm.edu 37 2 29450494 29450494 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALKBH1 8846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78140153 78140153 + 3'UTR SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH2 121642 broad.mit.edu 37 12 109530325 109530325 + Silent SNP T A A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALKBH2 121642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109530381 109530381 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH3 221120 hgsc.bcm.edu;ucsc.edu 37 11 43941531 43941532 + Frame_Shift_Ins INS - - ATCC novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH4 54784 broad.mit.edu 37 7 102098340 102098340 + Missense_Mutation SNP C T T rs145100726 byfrequency TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALKBH5 54890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18111566 18111566 + Silent SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH6 84964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36504275 36504275 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH6 84964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36504305 36504305 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH7 84266 broad.mit.edu 37 19 6374925 6374925 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALKBH8 91801 hgsc.bcm.edu;ucsc.edu 37 11 107375723 107375723 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALKBH8 91801 hgsc.bcm.edu;ucsc.edu 37 11 107375782 107375782 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALKBH8 91801 hgsc.bcm.edu;ucsc.edu 37 11 107423862 107423863 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALLC 55821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3727474 3727474 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALLC 55821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3727534 3727534 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALLC 55821 hgsc.bcm.edu 37 2 3721639 3721639 + Intron SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 broad.mit.edu 37 2 73613032 73613037 + In_Frame_Del DEL GGAGGA - - rs66480235 bycluster TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 GGAGGA GGAGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALMS1 7840 broad.mit.edu 37 2 73680749 73680749 + Silent SNP A G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALMS1 7840 broad.mit.edu 37 2 73830581 73830582 + Intron INS - A A rs113408397 unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALMS1 7840 broad.mit.edu 37 2 73830582 73830582 + Intron DEL A - - rs113408397 unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALMS1 7840 broad.mit.edu 37 2 73830582 73830582 + Intron DEL A - - rs113408397 unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALMS1 7840 broad.mit.edu;hgsc.bcm.edu 37 2 73677725 73677725 + Silent SNP T T A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73651718 73651718 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73651859 73651859 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73680768 73680768 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73717074 73717074 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73746997 73746997 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1 7840 hgsc.bcm.edu 37 2 73675227 73675228 + In_Frame_Ins INS - - CTC novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALMS1 7840 hgsc.bcm.edu;ucsc.edu 37 2 73717436 73717437 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALMS1P 200420 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73900989 73900989 + RNA SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALOX12B 242 broad.mit.edu 37 17 7983835 7983835 + Intron SNP G A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALOX12B 242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7990740 7990740 + Silent SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALOX15 246 broad.mit.edu 37 17 4534860 4534860 + 3'UTR SNP T G G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALOX15B 247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7942501 7942501 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALOX15B 247 hgsc.bcm.edu;ucsc.edu 37 17 7945736 7945736 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALOX5 240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 45935891 45935891 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALOX5 240 hgsc.bcm.edu 37 10 45935953 45935953 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALOXE3 59344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8020117 8020117 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALOXE3 59344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8021249 8021249 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALOXE3 59344 broad.mit.edu;ucsc.edu 37 17 8018347 8018347 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPI 248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233321772 233321772 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPI 248 broad.mit.edu;ucsc.edu 37 2 233322764 233322764 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPI 248 hgsc.bcm.edu 37 2 233322958 233322958 + Silent SNP T T C rs41265121 bycluster;byfrequency;by1000genomes TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALPK1 80216 broad.mit.edu 37 4 113362552 113362552 + 3'UTR DEL G - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPK1 80216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 113360933 113360933 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK1 80216 hgsc.bcm.edu 37 4 113347609 113347609 + Intron SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 broad.mit.edu 37 18 56148699 56148700 + 3'UTR DEL TG - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56202373 56202373 + Silent SNP T T C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56204268 56204268 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56205081 56205081 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56205106 56205106 + Silent SNP A A T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56205356 56205356 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56246350 56246350 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK2 115701 hgsc.bcm.edu 37 18 56184174 56184174 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALPK2 115701 hgsc.bcm.edu;ucsc.edu 37 18 56171280 56171280 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALPK2 115701 hgsc.bcm.edu;ucsc.edu 37 18 56246200 56246200 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALPK3 57538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85405941 85405941 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPK3 57538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85406027 85406027 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ALPK3 57538 broad.mit.edu;ucsc.edu 37 15 85360311 85360311 + Silent SNP G T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx ALPK3 57538 hgsc.bcm.edu;ucsc.edu 37 15 85407697 85407697 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPL 249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21903878 21903878 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPL 249 hgsc.bcm.edu 37 1 21887655 21887655 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALPP 250 broad.mit.edu 37 2 233246013 233246013 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPP 250 broad.mit.edu 37 2 233246044 233246044 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPP 250 broad.mit.edu;hgsc.bcm.edu 37 2 233245025 233245025 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPP 250 broad.mit.edu;hgsc.bcm.edu 37 2 233246013 233246013 + Silent SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPPL2 251 broad.mit.edu 37 2 233274125 233274125 + Missense_Mutation SNP G T T rs145179673 byfrequency;alternate_allele TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALPPL2 251 hgsc.bcm.edu 37 2 233271669 233271669 + Missense_Mutation SNP C C T rs41415150 unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALPPL2 251 hgsc.bcm.edu 37 2 233273011 233273011 + Missense_Mutation SNP C C G rs75920311 bycluster;byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALS2 57679 broad.mit.edu 37 2 202625340 202625340 + Intron DEL A - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALS2 57679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202590152 202590152 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ALS2 57679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202598155 202598155 + Silent SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ALS2 57679 hgsc.bcm.edu 37 2 202580492 202580492 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALS2 57679 hgsc.bcm.edu 37 2 202593234 202593234 + Splice_Site SNP C C G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALS2 57679 hgsc.bcm.edu;ucsc.edu 37 2 202589118 202589118 + Silent SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALS2CL 259173 broad.mit.edu;ucsc.edu 37 3 46721931 46721931 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALS2CR11 151254 hgsc.bcm.edu 37 2 202352345 202352345 + Missense_Mutation SNP C C A rs149841146 unknown;alternate_allele TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALS2CR11 151254 hgsc.bcm.edu 37 2 202357586 202357586 + Intron SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ALS2CR11 151254 hgsc.bcm.edu 37 2 202430456 202430456 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALS2CR12 130540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202172343 202172343 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ALS2CR8 79800 broad.mit.edu;ucsc.edu 37 2 203818776 203818776 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ALS2CR8 79800 hgsc.bcm.edu;ucsc.edu 37 2 203841986 203841986 + Splice_Region SNP T T C novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMAC1 0 broad.mit.edu;hgsc.bcm.edu 37 17 33520557 33520557 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMAC1 0 broad.mit.edu;hgsc.bcm.edu 37 17 33521121 33521121 + Missense_Mutation SNP G G A rs149963193 unknown;alternate_allele TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMAC1 0 hgsc.bcm.edu;ucsc.edu 37 17 33520323 33520323 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMAC1L2 0 broad.mit.edu 37 8 11189681 11189681 + 3'UTR SNP A G G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMAC1L2 0 broad.mit.edu;hgsc.bcm.edu 37 8 11188632 11188632 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMAC1L3 0 broad.mit.edu;hgsc.bcm.edu 37 17 7384817 7384817 + 5'UTR SNP G G C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMAC1L3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7385621 7385621 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMAC1L3 0 hgsc.bcm.edu 37 17 7385682 7385682 + Missense_Mutation SNP G G A rs143401129 unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMACR 23600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33989521 33989521 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMBN 258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71469169 71469169 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMBN 258 hgsc.bcm.edu 37 4 71468584 71468584 + Intron SNP T T A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMBN 258 hgsc.bcm.edu 37 4 71468584 71468584 + Intron SNP T T A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMBP 259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116840415 116840415 + Silent SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMBP 259 hgsc.bcm.edu 37 9 116839007 116839007 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMBRA1 55626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46563577 46563577 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMBRA1 55626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46567203 46567203 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMBRA1 55626 hgsc.bcm.edu;ucsc.edu 37 11 46439573 46439574 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMD1 262 broad.mit.edu 37 6 111196178 111196179 + 5'UTR INS - A A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMDHD1 144193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96360253 96360253 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMDHD1 144193 hgsc.bcm.edu 37 12 96350642 96350642 + Silent SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMDHD2 51005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2579481 2579481 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMDHD2 51005 hgsc.bcm.edu 37 16 2577631 2577631 + Intron SNP T T C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMELX 265 broad.mit.edu 37 X 11316960 11316960 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMHR2 269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53818668 53818668 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMHR2 269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53819616 53819616 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMICA1 120425 broad.mit.edu 37 11 118083800 118083800 + Intron SNP G T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMICA1 120425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118068750 118068750 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMICA1 120425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118071315 118071315 + Missense_Mutation SNP G G A rs148107592 unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMICA1 120425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118074350 118074350 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMMECR1 9949 broad.mit.edu 37 X 109441522 109441522 + 3'UTR DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMMECR1 9949 hgsc.bcm.edu;ucsc.edu 37 X 109445697 109445697 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMMECR1L 83607 hgsc.bcm.edu 37 2 128626847 128626847 + Intron SNP T T C rs111331085 byfrequency;by1000genomes;alternate_allele TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMN1 196394 hgsc.bcm.edu;ucsc.edu 37 12 31850290 31850290 + RNA SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMN1 196394 hgsc.bcm.edu;ucsc.edu 37 12 31850698 31850698 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMN 81693 broad.mit.edu 37 14 103389067 103389067 + Silent SNP C T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMN 81693 broad.mit.edu 37 14 103394801 103394801 + Silent SNP A T T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMN 81693 broad.mit.edu 37 14 103396005 103396005 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMN 81693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 103395248 103395248 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMN 81693 hgsc.bcm.edu 37 14 103390308 103390308 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMOT 154796 broad.mit.edu 37 X 112048309 112048309 + Missense_Mutation SNP G C C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMOT 154796 hgsc.bcm.edu 37 X 112022297 112022298 + In_Frame_Ins INS - - AGG novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMOT 154796 hgsc.bcm.edu 37 X 112048196 112048196 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMOTL1 154810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94554897 94554897 + Silent SNP C C G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMOTL1 154810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94592715 94592715 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMOTL2 51421 hgsc.bcm.edu 37 3 134079242 134079243 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMPD1 270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115221022 115221022 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMPD2 271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110170727 110170727 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMPD3 272 broad.mit.edu 37 11 10483005 10483005 + Intron DEL C - - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMPD3 272 broad.mit.edu 37 11 10527578 10527578 + 3'UTR SNP T C C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMPD3 272 hgsc.bcm.edu 37 11 10500152 10500153 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMPD3 272 hgsc.bcm.edu 37 11 10517135 10517135 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMPD3 272 hgsc.bcm.edu;ucsc.edu 37 11 10516458 10516458 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMPH 273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38429478 38429478 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMPH 273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38530710 38530710 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMPH 273 broad.mit.edu;ucsc.edu 37 7 38431539 38431539 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMT 275 broad.mit.edu 37 3 49454438 49454438 + 3'UTR DEL C - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMY1B 277 hgsc.bcm.edu 37 1 104233933 104233933 + Missense_Mutation SNP A A G rs1130744 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMY1B 277 hgsc.bcm.edu 37 1 104236035 104236035 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMY1B 277 hgsc.bcm.edu 37 1 104238207 104238207 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AMY2A 279 broad.mit.edu 37 1 104160101 104160101 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMY2B 280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 104116348 104116348 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMZ1 155185 broad.mit.edu 37 7 2753275 2753276 + 3'UTR INS - CA CA novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AMZ2 51321 broad.mit.edu;hgsc.bcm.edu 37 17 66251944 66251944 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AMZ2P1 201283 broad.mit.edu 37 17 62964436 62964436 + RNA SNP G T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANAPC11 51529 broad.mit.edu;hgsc.bcm.edu 37 17 79857246 79857246 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC16 119504 hgsc.bcm.edu 37 10 73992824 73992825 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC16 119504 hgsc.bcm.edu 37 10 73992824 73992825 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC1 64682 broad.mit.edu 37 2 112630631 112630631 + Intron SNP A G G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANAPC1 64682 broad.mit.edu;hgsc.bcm.edu 37 2 112539971 112539971 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC1 64682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 112625654 112625654 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC1 64682 hgsc.bcm.edu 37 2 112536274 112536274 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC1 64682 hgsc.bcm.edu;ucsc.edu 37 2 112638368 112638370 + In_Frame_Del DEL ATC ATC - novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 ATC ATC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANAPC2 29882 broad.mit.edu;hgsc.bcm.edu 37 9 140075307 140075307 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC4 29945 hgsc.bcm.edu;ucsc.edu 37 4 25418164 25418164 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC5 51433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121758187 121758187 + Splice_Site SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANAPC7 51434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110815266 110815266 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANAPC7 51434 hgsc.bcm.edu 37 12 110820691 110820691 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANAPC7 51434 hgsc.bcm.edu 37 12 110825591 110825591 + Silent SNP A A G rs61754907 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANGPT1 284 broad.mit.edu 37 8 108296831 108296831 + Intron SNP T A A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANGPT1 284 broad.mit.edu;hgsc.bcm.edu 37 8 108348486 108348486 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPT1 284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 108334357 108334357 + Splice_Site SNP C C G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPT1 284 hgsc.bcm.edu;ucsc.edu 37 8 108334182 108334182 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANGPT2 285 broad.mit.edu 37 8 6357261 6357268 + 3'UTR DEL TTCAGATC - - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 TTCAGATC TTCAGATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANGPT4 51378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 896633 896633 + Silent SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPT4 51378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 896710 896710 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPTL3 27329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 63063407 63063407 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPTL4 51129 broad.mit.edu 37 19 8429515 8429515 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANGPTL4 51129 hgsc.bcm.edu;ucsc.edu 37 19 8438683 8438683 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANGPTL6 83854 broad.mit.edu;hgsc.bcm.edu 37 19 10206762 10206762 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPTL7 10218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11254587 11254587 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANGPTL7 10218 hgsc.bcm.edu;ucsc.edu 37 1 11249984 11249984 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK1 286 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 41552240 41552240 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANK1 286 hgsc.bcm.edu 37 8 41577248 41577248 + Silent SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANK2 287 broad.mit.edu;hgsc.bcm.edu 37 4 114302688 114302688 + 3'UTR SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114267059 114267059 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114275680 114275680 + Missense_Mutation SNP C C T rs148760530 unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114277953 114277953 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114286249 114286249 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114290829 114290829 + Silent SNP A A T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANK2 287 broad.mit.edu;ucsc.edu 37 4 114213643 114213643 + Silent SNP T C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx ANK2 287 hgsc.bcm.edu 37 4 114170963 114170963 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANK2 287 hgsc.bcm.edu 37 4 114179233 114179233 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID ANK2 287 hgsc.bcm.edu 37 4 114179539 114179539 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANK2 287 hgsc.bcm.edu 37 4 114179539 114179539 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANK2 287 hgsc.bcm.edu;ucsc.edu 37 4 114277376 114277376 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu 37 10 61900235 61900235 + Intron SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61815520 61815520 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61829377 61829377 + Silent SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61830323 61830323 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61830794 61830794 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61831542 61831542 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61833421 61833421 + Silent SNP A A G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61835232 61835232 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61835269 61835269 + Silent SNP C C T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61868693 61868693 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 62039296 62039296 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 hgsc.bcm.edu;ucsc.edu 37 10 61831858 61831858 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 hgsc.bcm.edu;ucsc.edu 37 10 61835851 61835851 + Silent SNP A A T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANK3 288 hgsc.bcm.edu;ucsc.edu 37 10 61865763 61865764 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKFN1 162282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 54403670 54403670 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKFN1 162282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 54452062 54452062 + Silent SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKFY1 51479 hgsc.bcm.edu 37 17 4083152 4083152 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKH 56172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14711323 14711323 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKH 56172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14751238 14751238 + Silent SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKHD1 54882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139876554 139876554 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKHD1 54882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139889648 139889648 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKHD1 54882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139905891 139905891 + Silent SNP C C T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANKHD1 54882 hgsc.bcm.edu;ucsc.edu 37 5 139864742 139864743 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKHD1-EIF4EBP3 404734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139866633 139866633 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANKHD1-EIF4EBP3 404734 broad.mit.edu;ucsc.edu 37 5 139876772 139876772 + Silent SNP T C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKHD1-EIF4EBP3 404734 hgsc.bcm.edu 37 5 139864831 139864831 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKHD1-EIF4EBP3 404734 hgsc.bcm.edu 37 5 139865230 139865230 + Silent SNP T T A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T T A T T Unknown Unknown Somatic Phase_I Capture 454 SOLID ANKHD1-EIF4EBP3 404734 hgsc.bcm.edu 37 5 139886426 139886426 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKHD1-EIF4EBP3 404734 hgsc.bcm.edu;ucsc.edu 37 5 139923626 139923626 + Intron SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKIB1 54467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91924303 91924303 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKIB1 54467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92027037 92027038 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKIB1 54467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92027912 92027912 + Silent SNP C C A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKIB1 54467 hgsc.bcm.edu;ucsc.edu 37 7 91974300 91974310 + Frame_Shift_Del DEL TTGTATGTGCA TTGTATGTGCA - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 TTGTATGTGCA TTGTATGTGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKK1 255239 broad.mit.edu 37 11 113270770 113270770 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKK1 255239 broad.mit.edu;hgsc.bcm.edu 37 11 113270032 113270032 + Silent SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ANKLE2 23141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133327385 133327385 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKLE2 23141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133331594 133331594 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKLE2 23141 hgsc.bcm.edu;ucsc.edu 37 12 133324430 133324432 + In_Frame_Del DEL GGT GGT - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 GGT GGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKMY1 51281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241465702 241465702 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKMY1 51281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241496637 241496637 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKMY2 57037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 16655424 16655424 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRA2 57763 broad.mit.edu;hgsc.bcm.edu 37 5 72849308 72849308 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD10 55608 broad.mit.edu 37 13 111533256 111533256 + Intron DEL C - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD10 55608 broad.mit.edu 37 13 111545198 111545199 + Intron INS - GT GT rs35719318 bycluster;by1000genomes TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD11 29123 broad.mit.edu 37 16 89345631 89345631 + Missense_Mutation SNP T G G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD11 29123 broad.mit.edu 37 16 89354863 89354863 + Intron SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD11 29123 hgsc.bcm.edu 37 16 89348396 89348396 + Silent SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD11 29123 hgsc.bcm.edu;ucsc.edu 37 16 89349043 89349043 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD11 29123 hgsc.bcm.edu;ucsc.edu 37 16 89350352 89350352 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD11 29123 hgsc.bcm.edu;ucsc.edu 37 16 89350692 89350692 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD12 23253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 9211598 9211598 + Silent SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD12 23253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 9256041 9256042 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD12 23253 hgsc.bcm.edu 37 18 9254693 9254693 + Silent SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD12 23253 hgsc.bcm.edu;ucsc.edu 37 18 9254423 9254423 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD1 27063 broad.mit.edu 37 10 92681008 92681008 + 5'UTR SNP G A A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD1 27063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 92679944 92679944 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD1 27063 hgsc.bcm.edu 37 10 92675943 92675943 + Silent SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD13B 124930 broad.mit.edu 37 17 27934892 27934892 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD13C 81573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70766485 70766485 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD13C 81573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70781173 70781173 + Silent SNP G G C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD17 26057 broad.mit.edu 37 4 73941870 73941870 + 3'UTR SNP G T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD17 26057 broad.mit.edu 37 4 73941874 73941874 + 3'UTR SNP A G G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73956463 73956463 + Silent SNP T T A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73979600 73979600 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73985963 73985963 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 74005971 74005971 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD17 26057 hgsc.bcm.edu;ucsc.edu 37 4 73986632 73986632 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD17 26057 hgsc.bcm.edu;ucsc.edu 37 4 74017194 74017194 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD17 26057 hgsc.bcm.edu;ucsc.edu 37 4 74021354 74021354 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD19 0 hgsc.bcm.edu;ucsc.edu 37 9 95580676 95580676 + 5'UTR SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD20A1 84210 hgsc.bcm.edu 37 9 67938638 67938641 + Frame_Shift_Del DEL TACT TACT - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 TACT TACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD20A3 441425 broad.mit.edu 37 9 67934791 67934794 + Frame_Shift_Del DEL AAAG - - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 AAAG AAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD20A3 441425 broad.mit.edu 37 9 67938633 67938633 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD20A3 441425 hgsc.bcm.edu 37 9 42380186 42380189 + Frame_Shift_Del DEL TACT TACT - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 TACT TACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD20A4 728747 hgsc.bcm.edu 37 9 69393857 69393860 + Frame_Shift_Del DEL TACT TACT - novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 TACT TACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD20B 0 broad.mit.edu 37 2 95483188 95483188 + 5'UTR SNP T C C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD20B 0 broad.mit.edu 37 2 95497757 95497757 + RNA SNP C G G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD22 118932 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90591656 90591656 + Missense_Mutation SNP C C A rs143516492 unknown;alternate_allele TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD2 26287 broad.mit.edu;hgsc.bcm.edu 37 10 99343409 99343409 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD23 200539 broad.mit.edu 37 2 97505515 97505515 + Silent SNP T C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD24 170961 hgsc.bcm.edu 37 19 4200138 4200138 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD26 22852 broad.mit.edu 37 10 27294432 27294432 + 3'UTR SNP T A A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD26 22852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27301965 27301967 + In_Frame_Del DEL GTG GTG - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 GTG GTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD26 22852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27324608 27324608 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD26 22852 hgsc.bcm.edu;ucsc.edu 37 10 27303499 27303499 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD26P1 124149 broad.mit.edu 37 16 46533886 46533886 + Frame_Shift_Del DEL T - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD27 84079 broad.mit.edu 37 19 33130248 33130248 + Intron SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD27 84079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33110234 33110234 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD27 84079 hgsc.bcm.edu;ucsc.edu 37 19 33119747 33119747 + Silent SNP T T C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD27 84079 hgsc.bcm.edu;ucsc.edu 37 19 33133044 33133044 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD27 84079 hgsc.bcm.edu;ucsc.edu 37 19 33149837 33149841 + Frame_Shift_Del DEL CCACT CCACT - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 CCACT CCACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD28 23243 hgsc.bcm.edu 37 3 15755032 15755032 + Splice_Site SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD29 147463 hgsc.bcm.edu;ucsc.edu 37 18 21229082 21229083 + Frame_Shift_Del INS - - A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD30A 91074 broad.mit.edu 37 10 37478443 37478443 + Missense_Mutation SNP A G G rs71283286 unknown;alternate_allele TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD30A 91074 broad.mit.edu 37 10 37520504 37520504 + 3'UTR SNP C A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD30A 91074 broad.mit.edu;hgsc.bcm.edu 37 10 37418819 37418819 + Splice_Site SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD30A 91074 broad.mit.edu;hgsc.bcm.edu 37 10 37422855 37422855 + Missense_Mutation SNP T T G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD30A 91074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 37508065 37508065 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD30B 374860 hgsc.bcm.edu 37 18 14780019 14780019 + Missense_Mutation SNP G G T rs72873710 bycluster;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD30B 374860 hgsc.bcm.edu 37 18 14851929 14851929 + Missense_Mutation SNP C C A rs2792527 bycluster;by2hit2allele TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD30BL 554226 hgsc.bcm.edu 37 2 133014546 133014546 + RNA SNP C C G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD31 256006 hgsc.bcm.edu;ucsc.edu 37 5 74400774 74400774 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD31 256006 hgsc.bcm.edu;ucsc.edu 37 5 74441847 74441847 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD32 84250 broad.mit.edu 37 5 94014548 94014548 + Silent SNP A G G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD32 84250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 93987546 93987546 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD32 84250 hgsc.bcm.edu;ucsc.edu 37 5 94030788 94030789 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD33 341405 broad.mit.edu 37 12 52285209 52285210 + 3'UTR INS - TA TA rs35582441 bycluster;byfrequency;by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD33 341405 broad.mit.edu 37 12 52285209 52285210 + 3'UTR INS - TA TA rs35582441 bycluster;byfrequency;by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD33 341405 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52282005 52282005 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD34A 284615 broad.mit.edu 37 1 145474846 145474846 + 3'UTR DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD34A 284615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145474166 145474166 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD34B 340120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79854670 79854670 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD34B 340120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79855596 79855596 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD34C 390616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79585881 79585881 + Silent SNP C C A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD34C 390616 hgsc.bcm.edu;ucsc.edu 37 15 79587076 79587085 + Frame_Shift_Del DEL TCTTGCTCTC TCTTGCTCTC - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 TCTTGCTCTC TCTTGCTCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD35 148741 broad.mit.edu;ucsc.edu 37 1 145558859 145558859 + Missense_Mutation SNP G A A rs150752253 byfrequency TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD35 148741 hgsc.bcm.edu 37 1 145562502 145562504 + In_Frame_Del DEL GGC GGC - novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD35 148741 hgsc.bcm.edu 37 1 145566760 145566760 + Silent SNP T T C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD36 375248 broad.mit.edu 37 2 97864367 97864367 + Frame_Shift_Del DEL A - - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36 375248 broad.mit.edu;hgsc.bcm.edu 37 2 97784175 97784175 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36 375248 broad.mit.edu;hgsc.bcm.edu 37 2 97849372 97849372 + Silent SNP T T C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36 375248 hgsc.bcm.edu 37 2 97817617 97817617 + Missense_Mutation SNP T T C rs77391458 bycluster;byfrequency TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36 375248 hgsc.bcm.edu 37 2 97817647 97817647 + Missense_Mutation SNP A A G rs79579412 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36 375248 hgsc.bcm.edu 37 2 97817647 97817647 + Missense_Mutation SNP A A G rs79579412 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36 375248 hgsc.bcm.edu 37 2 97820493 97820493 + Intron SNP T T C rs78192889 bycluster TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD36 375248 hgsc.bcm.edu 37 2 97833361 97833361 + Intron SNP A A G rs74453630 bycluster;byfrequency TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD36 375248 hgsc.bcm.edu 37 2 97873515 97873515 + Intron SNP C C T rs4063410 bycluster;by1000genomes TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD36 375248 hgsc.bcm.edu 37 2 97873515 97873515 + Intron SNP C C T rs4063410 bycluster;by1000genomes TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD36 375248 hgsc.bcm.edu 37 2 97883055 97883055 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36 375248 hgsc.bcm.edu;ucsc.edu 37 2 97784153 97784153 + 5'UTR SNP T T G rs2442303 unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD36B 57730 broad.mit.edu 37 2 98201807 98201807 + Silent SNP C T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD36B 57730 hgsc.bcm.edu 37 2 98124519 98124519 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36B 57730 hgsc.bcm.edu 37 2 98165911 98165912 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36BP2(dist=1033014) 0 broad.mit.edu;hgsc.bcm.edu 37 2 90139123 90139123 + IGR SNP G G A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36BP2(dist=159848) 0 broad.mit.edu;hgsc.bcm.edu 37 2 89265957 89265957 + IGR SNP G G C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36BP2(dist=172017) 0 broad.mit.edu;hgsc.bcm.edu 37 2 89278126 89278126 + IGR SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36BP2(dist=55379) 0 broad.mit.edu;hgsc.bcm.edu 37 2 89161488 89161488 + IGR SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36BP2(dist=79256) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 89185365 89185365 + IGR SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD36BP2(dist=938262) 0 broad.mit.edu;hgsc.bcm.edu 37 2 90044371 90044371 + IGR SNP C C A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD39 51239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97514102 97514102 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD40 91369 hgsc.bcm.edu 37 17 48777220 48777221 + In_Frame_Ins INS - - TCA novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD42 338699 broad.mit.edu 37 11 82924235 82924235 + Intron DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD42 338699 broad.mit.edu 37 11 82959339 82959342 + 3'UTR DEL ACAC - - rs139976921 bycluster;by1000genomes TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 ACAC ACAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD42 338699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 82905759 82905759 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD43 0 hgsc.bcm.edu;ucsc.edu 37 5 132150878 132150878 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD44 91526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197953472 197953473 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD44 91526 broad.mit.edu;ucsc.edu 37 2 197946412 197946412 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD44 91526 hgsc.bcm.edu;ucsc.edu 37 2 197953420 197953420 + Intron SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD44 91526 hgsc.bcm.edu;ucsc.edu 37 2 197954719 197954719 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD50 57182 broad.mit.edu 37 4 125631792 125631792 + 5'UTR SNP A C C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD50 57182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 125590855 125590855 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD50 57182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 125631530 125631530 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD50 57182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 125631599 125631599 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD50 57182 broad.mit.edu;ucsc.edu 37 4 125590998 125590998 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD50 57182 hgsc.bcm.edu;ucsc.edu 37 4 125590305 125590305 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD52 283373 broad.mit.edu 37 12 56650922 56650922 + Intron SNP G A A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD52 283373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56647514 56647514 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD52 283373 hgsc.bcm.edu 37 12 56646070 56646070 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD53 79998 hgsc.bcm.edu 37 2 71212405 71212405 + Missense_Mutation SNP T T C rs61732279 bycluster;byfrequency;by1000genomes TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD54 129138 broad.mit.edu 37 22 38227935 38227935 + 3'UTR SNP A G G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD55 79722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55407417 55407417 + Silent SNP A A G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD55 79722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55412459 55412459 + Silent SNP G G T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD55 79722 broad.mit.edu;ucsc.edu 37 5 55407454 55407454 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD55 79722 hgsc.bcm.edu 37 5 55455707 55455707 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD55 79722 hgsc.bcm.edu 37 5 55466560 55466574 + In_Frame_Del DEL CGGCCATTTTTATCT CGGCCATTTTTATCT - novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CGGCCATTTTTATCT CGGCCATTTTTATCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD56 0 hgsc.bcm.edu 37 4 77817362 77817362 + Silent SNP T T C rs2703131 bycluster;byfrequency;by1000genomes TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD56 0 hgsc.bcm.edu 37 4 77817972 77817972 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD5 0 hgsc.bcm.edu 37 20 10030475 10030475 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANKRD57 0 broad.mit.edu 37 2 110373676 110373677 + 3'UTR INS - T T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD58 0 broad.mit.edu 37 X 118893385 118893385 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD6 22881 broad.mit.edu 37 6 90340734 90340734 + 3'UTR SNP G A A rs9344950 bycluster;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKRD6 22881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90338835 90338835 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD6 22881 hgsc.bcm.edu;ucsc.edu 37 6 90340623 90340627 + Frame_Shift_Del DEL ATCAG ATCAG - novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 ATCAG ATCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD7 56311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117864901 117864901 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD7 56311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117874795 117874795 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKRD7 56311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117876197 117876197 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS1A 23294 hgsc.bcm.edu 37 6 34985551 34985553 + In_Frame_Del DEL CAA CAA - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 CAA CAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS1B 56899 broad.mit.edu;hgsc.bcm.edu 37 12 100378000 100378000 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS1B 56899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100206021 100206021 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS1B 56899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 99194855 99194855 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS1B 56899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 99793525 99793525 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS3 124401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4776983 4776983 + Silent SNP G G C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS3 124401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4780097 4780097 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS4B 257629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21261382 21261382 + Nonsense_Mutation SNP C C G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANKS4B 257629 broad.mit.edu;ucsc.edu 37 16 21261470 21261470 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKS6 203286 broad.mit.edu 37 9 101498789 101498789 + 3'UTR SNP C A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANKZF1 55139 broad.mit.edu 37 2 220099090 220099090 + Intron SNP G T T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANLN 54443 broad.mit.edu 37 7 36478858 36478858 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO10 55129 broad.mit.edu 37 3 43474215 43474215 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO10 55129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 43618354 43618354 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO10 55129 hgsc.bcm.edu;ucsc.edu 37 3 43618256 43618256 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANO1 55107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 70031793 70031793 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO1 55107 broad.mit.edu;ucsc.edu 37 11 70017113 70017113 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO1 55107 hgsc.bcm.edu 37 11 70014095 70014095 + Intron SNP C C T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANO1 55107 hgsc.bcm.edu;ucsc.edu 37 11 70017025 70017025 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO2 57101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 5672713 5672713 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO2 57101 broad.mit.edu;ucsc.edu 37 12 6055316 6055316 + Intron SNP C G G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO2 57101 hgsc.bcm.edu;ucsc.edu 37 12 5744453 5744453 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANO3 63982 broad.mit.edu;hgsc.bcm.edu 37 11 26465333 26465333 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO3 63982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26558968 26558968 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO3 63982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26563538 26563538 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO4 121601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 101504334 101504334 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO5 203859 broad.mit.edu 37 11 22301426 22301426 + 3'UTR SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO5 203859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22215007 22215007 + 5'UTR SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO5 203859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22242734 22242734 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO6 196527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 45810629 45810629 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO7 50636 broad.mit.edu 37 2 242127987 242127987 + 5'UTR SNP C A A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO7 50636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242163570 242163570 + 3'UTR SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO7 50636 hgsc.bcm.edu 37 2 242135132 242135132 + Missense_Mutation SNP G G A rs149691575 unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANO7 50636 hgsc.bcm.edu 37 2 242154264 242154264 + Silent SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANO8 57719 broad.mit.edu 37 19 17434120 17434121 + 3'UTR INS - TGTG TGTG rs72194730 bycluster;by1000genomes;alternate_allele TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO8 57719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17439020 17439020 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANO9 338440 broad.mit.edu 37 11 441994 441994 + 5'UTR SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANO9 338440 broad.mit.edu;ucsc.edu 37 11 430378 430378 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANP32A 8125 broad.mit.edu 37 15 69097186 69097186 + Intron DEL G - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANP32B 10541 hgsc.bcm.edu 37 9 100777710 100777710 + Missense_Mutation SNP T T A rs112073824 unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANP32B 10541 hgsc.bcm.edu 37 9 100777730 100777730 + 3'UTR SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANP32B 10541 hgsc.bcm.edu 37 9 100777730 100777730 + 3'UTR SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANP32C 23520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 165118171 165118172 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANP32C 23520 hgsc.bcm.edu 37 4 165118362 165118362 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANP32E 81611 broad.mit.edu 37 1 150192837 150192837 + 3'UTR SNP A C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANP32E 81611 hgsc.bcm.edu 37 1 150199042 150199042 + Missense_Mutation SNP C C A rs28594165 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANP32E 81611 hgsc.bcm.edu 37 1 150199045 150199045 + Silent SNP T T C rs28460085 bycluster;byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANPEP 290 broad.mit.edu 37 15 90349847 90349847 + 5'UTR SNP A G G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90340889 90340889 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90348359 90348359 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90349564 90349564 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90349608 90349608 + Silent SNP T T C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANPEP 290 hgsc.bcm.edu 37 15 90342493 90342493 + Silent SNP G G C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANPEP 290 hgsc.bcm.edu 37 15 90342493 90342493 + Silent SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANPEP 290 hgsc.bcm.edu 37 15 90342657 90342657 + Silent SNP C C A rs184252270 by1000genomes;alternate_allele TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANPEP 290 hgsc.bcm.edu 37 15 90347747 90347747 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANPEP 290 hgsc.bcm.edu;ucsc.edu 37 15 90344775 90344775 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANPEP 290 hgsc.bcm.edu;ucsc.edu 37 15 90348362 90348362 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANTXR1 84168 hgsc.bcm.edu;ucsc.edu 37 2 69409628 69409628 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANUBL1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 46121526 46121526 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANUBL1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 46121548 46121548 + Missense_Mutation SNP C C T rs149725835 unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA10 11199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 169100409 169100409 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA10 11199 broad.mit.edu;ucsc.edu 37 4 169085402 169085402 + Silent SNP T C C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANXA11 311 broad.mit.edu 37 10 81915581 81915581 + 3'UTR SNP T G G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANXA13 312 hgsc.bcm.edu;ucsc.edu 37 8 124707919 124707919 + Intron SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA2 302 broad.mit.edu;hgsc.bcm.edu 37 15 60641324 60641324 + Silent SNP T T G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA2P3 305 broad.mit.edu 37 10 66586119 66586119 + RNA SNP G T T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ANXA3 306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79518556 79518556 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA3 306 hgsc.bcm.edu;ucsc.edu 37 4 79516573 79516573 + Silent SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANXA4 307 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70045736 70045736 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA4 307 hgsc.bcm.edu;ucsc.edu 37 2 70008703 70008703 + Silent SNP C C A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANXA5 308 hgsc.bcm.edu 37 4 122617718 122617718 + Intron SNP G G C rs2306417 bycluster;byfrequency;by1000genomes TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANXA6 309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150519791 150519791 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA6 309 hgsc.bcm.edu 37 5 150514009 150514009 + Silent SNP G G A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANXA7 310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75155821 75155821 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ANXA8L1 728113 hgsc.bcm.edu;ucsc.edu 37 10 47158882 47158882 + Silent SNP G G A rs2801067 bysubmitter TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ANXA9 8416 broad.mit.edu 37 1 150954702 150954702 + 5'UTR DEL G - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AOAH 313 broad.mit.edu 37 7 36763985 36763986 + 5'UTR DEL CA - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AOAH 313 hgsc.bcm.edu;ucsc.edu 37 7 36589027 36589027 + Intron SNP T T A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AOC2 314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40997011 40997011 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AOC2 314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40997546 40997546 + Silent SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AOC2 314 hgsc.bcm.edu 37 17 40996867 40996868 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AOC2 314 hgsc.bcm.edu;ucsc.edu 37 17 40997960 40997960 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AOC3 8639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41004871 41004871 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AOX1 316 broad.mit.edu 37 2 201450857 201450857 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AOX1 316 broad.mit.edu;ucsc.edu 37 2 201533423 201533423 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AOX1 316 hgsc.bcm.edu 37 2 201474078 201474078 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AOX1 316 hgsc.bcm.edu 37 2 201474083 201474083 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AOX1 316 hgsc.bcm.edu 37 2 201515874 201515874 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AOX1 316 hgsc.bcm.edu;ucsc.edu 37 2 201488671 201488671 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AOX1 316 hgsc.bcm.edu;ucsc.edu 37 2 201533350 201533350 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP1AR 55435 hgsc.bcm.edu;ucsc.edu 37 4 113175897 113175897 + Intron SNP T T A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP1G1 164 broad.mit.edu 37 16 71780730 71780730 + Intron SNP C G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP1G1 164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71789925 71789925 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP1G1 164 hgsc.bcm.edu 37 16 71803568 71803568 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP1G1 164 hgsc.bcm.edu;ucsc.edu 37 16 71798592 71798592 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP1G2 8906 broad.mit.edu 37 14 24036229 24036229 + Intron DEL A - - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP1G2 8906 broad.mit.edu;hgsc.bcm.edu 37 14 24035666 24035666 + Intron SNP G G C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP1G2 8906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24033327 24033327 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP1G2 8906 hgsc.bcm.edu 37 14 24035342 24035342 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP1M1 8907 hgsc.bcm.edu 37 19 16314301 16314301 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP2A1 160 broad.mit.edu;hgsc.bcm.edu 37 19 50309986 50309986 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP2B1 163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33932800 33932800 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP2B1 163 hgsc.bcm.edu 37 17 33951514 33951514 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP2B1 163 hgsc.bcm.edu;ucsc.edu 37 17 33921080 33921080 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP2M1 1173 broad.mit.edu 37 3 183898259 183898259 + Intron SNP A T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP2M1 1173 hgsc.bcm.edu;ucsc.edu 37 3 183894870 183894870 + Intron SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP2M1 1173 hgsc.bcm.edu;ucsc.edu 37 3 183899959 183899959 + Silent SNP G G T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3B1 8546 broad.mit.edu;hgsc.bcm.edu 37 5 77298669 77298669 + 3'UTR SNP A A G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP3B1 8546 hgsc.bcm.edu 37 5 77316582 77316582 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3B1 8546 hgsc.bcm.edu 37 5 77396836 77396838 + In_Frame_Del DEL TTC TTC - novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP3B1 8546 hgsc.bcm.edu 37 5 77406143 77406143 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3B1 8546 hgsc.bcm.edu;ucsc.edu 37 5 77523970 77523970 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3B2 8120 broad.mit.edu;hgsc.bcm.edu 37 15 83349316 83349316 + Silent SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP3B2 8120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83349701 83349701 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP3B2 8120 hgsc.bcm.edu 37 15 83332659 83332660 + Frame_Shift_Ins INS - - A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3D1 8943 broad.mit.edu 37 19 2115366 2115366 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP3D1 8943 hgsc.bcm.edu 37 19 2132487 2132487 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3D1 8943 hgsc.bcm.edu;ucsc.edu 37 19 2121803 2121803 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3M1 26985 broad.mit.edu 37 10 75881508 75881508 + 3'UTR DEL A - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP3M1 26985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75884279 75884279 + Silent SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP3M2 10947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 42015561 42015561 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP3S1 1176 broad.mit.edu 37 5 115177762 115177762 + Missense_Mutation SNP A C C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP3S1 1176 hgsc.bcm.edu 37 5 115202418 115202421 + Frame_Shift_Del DEL AAGA AAGA - rs80118146 unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 AAGA AAGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP3S2 10239 broad.mit.edu;ucsc.edu 37 15 90431758 90431758 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP4B1 10717 broad.mit.edu;ucsc.edu 37 1 114439000 114439000 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AP4B1 10717 hgsc.bcm.edu;ucsc.edu 37 1 114440494 114440494 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP4B1 10717 hgsc.bcm.edu;ucsc.edu 37 1 114447239 114447239 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AP4E1 23431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51216161 51216161 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP4E1 23431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51217400 51217400 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP4E1 23431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51293254 51293254 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP4E1 23431 hgsc.bcm.edu;ucsc.edu 37 15 51276219 51276221 + Frame_Shift_Del DEL TTC TTC - novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AP4M1 9179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99700547 99700547 + Silent SNP T T C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBA1 320 broad.mit.edu 37 9 72131197 72131197 + Silent SNP G A A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APBA2 321 broad.mit.edu 37 15 29409434 29409434 + 3'UTR SNP G T T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APBA2 321 broad.mit.edu;hgsc.bcm.edu 37 15 29346935 29346935 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBA2 321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 29346528 29346528 + Silent SNP G G A novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBA2 321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 29400578 29400578 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBA2 321 hgsc.bcm.edu;ucsc.edu 37 15 29385399 29385399 + Silent SNP G G T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APBA3 9546 hgsc.bcm.edu 37 19 3754020 3754020 + Silent SNP G G C rs61731066 bycluster;byfrequency;by1000genomes TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APBB1 322 hgsc.bcm.edu;ucsc.edu 37 11 6423907 6423907 + Silent SNP G G A rs1800424 bycluster;byfrequency;by1000genomes TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBB1IP 54518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 26789847 26789847 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBB2 323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 40829224 40829224 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBB2 323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 41015685 41015685 + Silent SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBB2 323 hgsc.bcm.edu 37 4 40892444 40892444 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APBB3 10307 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139942267 139942267 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APBB3 10307 broad.mit.edu;ucsc.edu 37 5 139941387 139941387 + Intron SNP G A A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APBB3 10307 hgsc.bcm.edu 37 5 139941190 139941190 + Silent SNP T T C novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APC2 10297 broad.mit.edu 37 19 1452862 1452863 + Intron INS - C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APC2 10297 broad.mit.edu 37 19 1453570 1453570 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APC2 10297 broad.mit.edu 37 19 1456344 1456344 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APC2 10297 broad.mit.edu;hgsc.bcm.edu 37 19 1467881 1467881 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APC2 10297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1461048 1461048 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APC 324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112170717 112170717 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APC 324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112176941 112176941 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APC 324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112178912 112178912 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq APC 324 hgsc.bcm.edu 37 5 112177363 112177363 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APC 324 hgsc.bcm.edu 37 5 112177788 112177788 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APC 324 hgsc.bcm.edu;ucsc.edu 37 5 112174812 112174812 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APCDD1L 164284 hgsc.bcm.edu 37 20 57036163 57036163 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APCS 325 broad.mit.edu;hgsc.bcm.edu 37 1 159558512 159558512 + 3'UTR SNP C C T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APCS 325 broad.mit.edu;hgsc.bcm.edu 37 1 159558513 159558513 + 3'UTR SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APCS 325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159557958 159557958 + Silent SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APEH 327 hgsc.bcm.edu 37 3 49716331 49716331 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APH1A 51107 broad.mit.edu 37 1 150238775 150238775 + Intron DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APH1A 51107 broad.mit.edu 37 1 150238892 150238892 + Intron SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APH1B 83464 broad.mit.edu 37 15 63598249 63598249 + 3'UTR DEL G - - novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APH1B 83464 broad.mit.edu;hgsc.bcm.edu 37 15 63569840 63569840 + Silent SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APH1B 83464 hgsc.bcm.edu 37 15 63571478 63571478 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APIP 51074 hgsc.bcm.edu 37 11 34909860 34909860 + Nonsense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APITD1 378708 broad.mit.edu 37 1 10490531 10490531 + 5'UTR SNP C G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APITD1 378708 broad.mit.edu 37 1 10490545 10490545 + 5'UTR SNP C T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APITD1 378708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10502399 10502399 + Silent SNP A A G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APITD1 378708 hgsc.bcm.edu 37 1 10494765 10494765 + RNA SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APLF 200558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 68740264 68740264 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APLF 200558 hgsc.bcm.edu 37 2 68805143 68805143 + Frame_Shift_Del DEL A A - rs149897324 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APLF 200558 hgsc.bcm.edu;ucsc.edu 37 2 68772385 68772385 + Silent SNP C C T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APLN 8862 broad.mit.edu 37 X 128781212 128781212 + 3'UTR DEL G - - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APLP1 333 broad.mit.edu 37 19 36360509 36360509 + Intron DEL C - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APLP1 333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36362618 36362618 + Silent SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APLP1 333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36362632 36362632 + Missense_Mutation SNP C C A rs142658251 unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APLP1 333 hgsc.bcm.edu 37 19 36370070 36370070 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APLP1 333 hgsc.bcm.edu 37 19 36370071 36370071 + Silent SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APLP1 333 hgsc.bcm.edu 37 19 36370102 36370102 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APLP2 334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129999984 129999984 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOA4 337 broad.mit.edu 37 11 116691512 116691515 + 3'UTR DEL GACA - - rs35211609 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 GACA GACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOA5 116519 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 116661335 116661335 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOA5 116519 hgsc.bcm.edu;ucsc.edu 37 11 116660943 116660944 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21225676 21225676 + Silent SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21225774 21225774 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21229236 21229236 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21242762 21242762 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21247881 21247881 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq APOB 338 broad.mit.edu;ucsc.edu 37 2 21256217 21256217 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOB 338 hgsc.bcm.edu 37 2 21225280 21225280 + Silent SNP A A G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOB 338 hgsc.bcm.edu;ucsc.edu 37 2 21224731 21224731 + Silent SNP A A G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID APOB 338 hgsc.bcm.edu;ucsc.edu 37 2 21224845 21224845 + Silent SNP C C A rs138421941 byfrequency;alternate_allele TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOB 338 hgsc.bcm.edu;ucsc.edu 37 2 21227505 21227505 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOB 338 hgsc.bcm.edu;ucsc.edu 37 2 21229016 21229016 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOB 338 hgsc.bcm.edu;ucsc.edu 37 2 21234327 21234327 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID APOB48R 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28508786 28508786 + Silent SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOB48R 0 hgsc.bcm.edu 37 16 28507398 28507424 + Frame_Shift_Del DEL GGGACAGCCTCAGGAGGGGAGGAGGCC GGGACAGCCTCAGGAGGGGAGGAGGCC - rs148114931 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGGACAGCCTCAGGAGGGGAGGAGGCC GGGACAGCCTCAGGAGGGGAGGAGGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOB48R 0 hgsc.bcm.edu 37 16 28509409 28509409 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOBEC1 339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7802168 7802168 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC1 339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7807218 7807218 + Silent SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC2 10930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41021140 41021140 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC3B 9582 broad.mit.edu 37 22 39387382 39387382 + Missense_Mutation SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOBEC3B 9582 broad.mit.edu;hgsc.bcm.edu 37 22 39380188 39380188 + Silent SNP G G A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC3D 140564 hgsc.bcm.edu 37 22 39421110 39421112 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC3D 140564 hgsc.bcm.edu;ucsc.edu 37 22 39421350 39421350 + Silent SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOBEC3F 200316 broad.mit.edu;hgsc.bcm.edu 37 22 39441014 39441014 + Silent SNP T T A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC3G 60489 broad.mit.edu 37 22 39475886 39475886 + Intron DEL A - - rs113088243 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOBEC3H 164668 hgsc.bcm.edu 37 22 39496323 39496325 + In_Frame_Del DEL AAC AAC - rs140936762 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC3H 164668 hgsc.bcm.edu 37 22 39496323 39496325 + In_Frame_Del DEL AAC AAC - rs140936762 bycluster;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOBEC4 403314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183617328 183617328 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOC3 345 broad.mit.edu 37 11 116703621 116703621 + 3'UTR SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOC3 345 broad.mit.edu 37 11 116703621 116703621 + 3'UTR SNP A C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOC3 345 hgsc.bcm.edu 37 11 116703546 116703546 + Silent SNP T T C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOC4 346 broad.mit.edu 37 19 45448708 45448708 + 3'UTR DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOH 350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64216834 64216834 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOH 350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64222147 64222147 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOH 350 broad.mit.edu;ucsc.edu 37 17 64213023 64213023 + Missense_Mutation SNP T G G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOL2 23780 broad.mit.edu 37 22 36623378 36623378 + 3'UTR SNP A T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOL2 23780 broad.mit.edu 37 22 36634598 36634598 + Intron SNP T A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOL2 23780 hgsc.bcm.edu 37 22 36624255 36624256 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOL4 80832 broad.mit.edu 37 22 36586051 36586051 + 3'UTR SNP C A A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APOL5 80831 broad.mit.edu;hgsc.bcm.edu 37 22 36123112 36123112 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOL5 80831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 36123236 36123236 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOO 79135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23874429 23874429 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APOOL 139322 hgsc.bcm.edu;ucsc.edu 37 X 84310894 84310894 + Silent SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APOOL 139322 hgsc.bcm.edu;ucsc.edu 37 X 84342599 84342602 + Frame_Shift_Del DEL CAAC CAAC - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 CAAC CAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APP 351 hgsc.bcm.edu;ucsc.edu 37 21 27277401 27277401 + Intron SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APPBP2 10513 hgsc.bcm.edu;ucsc.edu 37 17 58529363 58529363 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APPL1 26060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 57283562 57283562 + Silent SNP T T A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APPL1 26060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 57291081 57291081 + Splice_Site SNP T T A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APPL1 26060 hgsc.bcm.edu 37 3 57280129 57280129 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APPL1 26060 hgsc.bcm.edu 37 3 57280133 57280133 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APPL1 26060 hgsc.bcm.edu 37 3 57291024 57291024 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID APPL2 55198 broad.mit.edu 37 12 105567935 105567935 + 3'UTR SNP C A A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx APPL2 55198 broad.mit.edu;hgsc.bcm.edu 37 12 105582196 105582196 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APPL2 55198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 105589090 105589090 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APPL2 55198 hgsc.bcm.edu;ucsc.edu 37 12 105582070 105582070 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq APPL2 55198 hgsc.bcm.edu;ucsc.edu 37 12 105583814 105583814 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AQP11 282679 broad.mit.edu;hgsc.bcm.edu 37 11 77314713 77314713 + Silent SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP12A 375318 broad.mit.edu;hgsc.bcm.edu 37 2 241631411 241631411 + Silent SNP C C A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP12A 375318 broad.mit.edu;hgsc.bcm.edu 37 2 241631447 241631447 + Silent SNP G G C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP12B 653437 broad.mit.edu 37 2 241622318 241622318 + Splice_Site SNP C T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP12B 653437 hgsc.bcm.edu 37 2 241621800 241621800 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP12B 653437 hgsc.bcm.edu 37 2 241621800 241621800 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP1 358 broad.mit.edu 37 7 30963232 30963232 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP2 359 broad.mit.edu;hgsc.bcm.edu 37 12 50344571 50344571 + 5'UTR SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP3 360 broad.mit.edu 37 9 33443673 33443673 + Intron SNP G A A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP3 360 broad.mit.edu 37 9 33443723 33443724 + Intron INS - TT TT novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP4 361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 24436385 24436385 + Silent SNP T T A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 broad.mit.edu 37 9 33384977 33384977 + 3'UTR SNP T G G rs13434 bycluster;byfrequency;by1000genomes TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33385452 33385452 + Intron SNP C G G rs75281638 unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33385458 33385458 + Intron SNP C T T rs78260530 unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33385532 33385532 + Intron SNP T C C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33385532 33385532 + Intron SNP T C C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33385545 33385545 + Intron SNP A T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33385545 33385545 + Intron SNP A T T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33395238 33395238 + Intron SNP C T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33395267 33395267 + Intron SNP C A A rs189801776 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33395300 33395300 + Intron DEL C - - rs140384726 bycluster;by1000genomes TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33395300 33395300 + Intron DEL C - - rs140384726 bycluster;by1000genomes TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 broad.mit.edu 37 9 33395300 33395300 + Intron DEL C - - rs140384726 bycluster;by1000genomes TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7 364 hgsc.bcm.edu 37 9 33385667 33385667 + Silent SNP A A G rs79779983 bycluster TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AQP7 364 hgsc.bcm.edu 37 9 33385784 33385784 + Missense_Mutation SNP C C G rs114937176 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 hgsc.bcm.edu 37 9 33385815 33385815 + Missense_Mutation SNP T T C rs62542745 bycluster TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AQP7 364 hgsc.bcm.edu 37 9 33385815 33385815 + Missense_Mutation SNP T T C rs62542745 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 hgsc.bcm.edu 37 9 33386465 33386465 + Missense_Mutation SNP A A G rs74668961 unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 hgsc.bcm.edu 37 9 33386465 33386465 + Missense_Mutation SNP A A G rs74668961 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 hgsc.bcm.edu 37 9 33386469 33386469 + Silent SNP C C T rs78695486 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 hgsc.bcm.edu 37 9 33387073 33387073 + Silent SNP G G A rs73645276 bycluster;byfrequency TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AQP7 364 hgsc.bcm.edu 37 9 33395103 33395103 + Silent SNP G G A rs148012859 byfrequency TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7 364 hgsc.bcm.edu 37 9 33395108 33395108 + Silent SNP G G A rs2381003 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQP7P1 375719 broad.mit.edu 37 9 67272723 67272724 + Intron DEL GC - - novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP7P1 375719 broad.mit.edu 37 9 67272725 67272726 + Intron DEL GG - - rs10656934 unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQP9 366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58471498 58471498 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQPEP 206338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 115323525 115323525 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQPEP 206338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 115327884 115327884 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQPEP 206338 hgsc.bcm.edu;ucsc.edu 37 5 115348099 115348099 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQPEP 206338 hgsc.bcm.edu;ucsc.edu 37 5 115350147 115350147 + Silent SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQPEP 206338 broad.mit.edu;ucsc.edu 37 5 115298600 115298600 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQR 9716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35149171 35149171 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQR 9716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35176806 35176806 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQR 9716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35196564 35196564 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQR 9716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35196663 35196663 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AQR 9716 broad.mit.edu;ucsc.edu 37 15 35236588 35236588 + Missense_Mutation SNP T G G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AQR 9716 hgsc.bcm.edu 37 15 35196655 35196655 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AQR 9716 hgsc.bcm.edu 37 15 35202458 35202458 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AQR 9716 hgsc.bcm.edu;ucsc.edu 37 15 35174721 35174721 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AR 367 broad.mit.edu 37 X 66788741 66788741 + Intron SNP A T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AR 367 broad.mit.edu 37 X 66943842 66943842 + 3'UTR DEL T - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AR 367 broad.mit.edu;hgsc.bcm.edu 37 X 66764972 66764972 + 5'UTR SNP T T C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AR 367 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 66765719 66765719 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AR 367 hgsc.bcm.edu 37 X 66788880 66788880 + Intron SNP A A T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAF 369 hgsc.bcm.edu 37 X 47428171 47428171 + Silent SNP A A T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAP1 116985 broad.mit.edu 37 11 72396554 72396554 + 3'UTR SNP A T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARAP1 116985 broad.mit.edu 37 11 72404351 72404351 + Intron SNP A T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARAP1 116985 hgsc.bcm.edu 37 11 72407643 72407644 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARAP1 116985 hgsc.bcm.edu 37 11 72418405 72418405 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAP2 116984 hgsc.bcm.edu 37 4 36118735 36118735 + Nonsense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAP2 116984 hgsc.bcm.edu 37 4 36148912 36148912 + Splice_Region SNP A A C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAP2 116984 hgsc.bcm.edu;ucsc.edu 37 4 36118770 36118770 + Intron SNP A A G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARAP2 116984 hgsc.bcm.edu;ucsc.edu 37 4 36148912 36148912 + Splice_Region SNP A A C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAP2 116984 hgsc.bcm.edu;ucsc.edu 37 4 36161108 36161108 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARAP3 64411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141051674 141051674 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARAP3 64411 hgsc.bcm.edu 37 5 141046056 141046056 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARAP3 64411 hgsc.bcm.edu 37 5 141046056 141046056 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARCN1 372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118454666 118454666 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARCN1 372 broad.mit.edu;ucsc.edu 37 11 118473069 118473069 + 3'UTR DEL G - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARCN1 372 hgsc.bcm.edu;ucsc.edu 37 11 118454621 118454621 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARF1 375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228285075 228285075 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARF1 375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228285383 228285383 + Silent SNP G G A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARF3 377 broad.mit.edu 37 12 49332451 49332452 + 3'UTR INS - GA GA rs3209193 bycluster TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARF3 377 broad.mit.edu 37 12 49332697 49332697 + 3'UTR SNP T G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARF3 377 hgsc.bcm.edu;ucsc.edu 37 12 49333860 49333860 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARF6 382 broad.mit.edu;hgsc.bcm.edu 37 14 50360965 50360965 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGAP2 84364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47193064 47193064 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGAP2 84364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47193866 47193866 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGAP2 84364 hgsc.bcm.edu 37 11 47195002 47195002 + Silent SNP A A C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARFGEF1 10565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68111271 68111271 + Silent SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARFGEF1 10565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68178355 68178355 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARFGEF1 10565 hgsc.bcm.edu;ucsc.edu 37 8 68111228 68111228 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARFGEF1 10565 hgsc.bcm.edu;ucsc.edu 37 8 68128844 68128844 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARFGEF1 10565 hgsc.bcm.edu;ucsc.edu 37 8 68137214 68137214 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47569395 47569395 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47591319 47591319 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47604916 47604916 + Silent SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47605030 47605030 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47605033 47605057 + Frame_Shift_Del DEL AAATAAAATGACGAAAGAGCAGTAT AAATAAAATGACGAAAGAGCAGTAT - novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 AAATAAAATGACGAAAGAGCAGTAT AAATAAAATGACGAAAGAGCAGTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 broad.mit.edu;ucsc.edu 37 20 47605027 47605027 + Splice_Site DEL G - - novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARFGEF2 10564 hgsc.bcm.edu 37 20 47605035 47605035 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 hgsc.bcm.edu 37 20 47605057 47605057 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFGEF2 10564 hgsc.bcm.edu;ucsc.edu 37 20 47601976 47601982 + Frame_Shift_Del DEL CAAGGTT CAAGGTT - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 CAAGGTT CAAGGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFIP1 27236 hgsc.bcm.edu;ucsc.edu 37 4 153784771 153784771 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARFIP1 27236 hgsc.bcm.edu;ucsc.edu 37 4 153831304 153831304 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFIP2 23647 broad.mit.edu 37 11 6500511 6500511 + Intron SNP A C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARFIP2 23647 broad.mit.edu;hgsc.bcm.edu 37 11 6499971 6499971 + Silent SNP A A T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARFIP2 23647 hgsc.bcm.edu;ucsc.edu 37 11 6500117 6500117 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARG1 383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131904255 131904256 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARG2 384 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68086727 68086727 + Silent SNP C C G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARGFX 503582 broad.mit.edu;hgsc.bcm.edu 37 3 121305227 121305227 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARGLU1 55082 broad.mit.edu 37 13 107209856 107209856 + Intron SNP C T T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP10 79658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148861016 148861016 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP10 79658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148861022 148861022 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP10 79658 hgsc.bcm.edu 37 4 148867765 148867765 + Splice_Region SNP T T A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP11A 9824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 32928531 32928531 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP11A 9824 hgsc.bcm.edu 37 15 32921822 32921822 + Missense_Mutation SNP C C G rs145484357 unknown;alternate_allele TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP11B 89839 broad.mit.edu 37 15 30938440 30938440 + RNA SNP A G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP11B 89839 broad.mit.edu 37 15 30938483 30938483 + RNA SNP T C C rs145453249 by1000genomes TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP11B 89839 broad.mit.edu 37 15 30938483 30938483 + RNA SNP T C C rs145453249 by1000genomes TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP11B 89839 broad.mit.edu;hgsc.bcm.edu 37 15 30919056 30919056 + Silent SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP12 94134 hgsc.bcm.edu;ucsc.edu 37 10 32098018 32098018 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP12 94134 hgsc.bcm.edu;ucsc.edu 37 10 32098041 32098041 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP1 392 hgsc.bcm.edu 37 11 46717596 46717596 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP15 55843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 143913197 143913197 + Silent SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP17 55114 broad.mit.edu 37 16 24947165 24947165 + Intron DEL T - - rs113859127 unknown;alternate_allele TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP17 55114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24942263 24942263 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP17 55114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24942355 24942355 + Silent SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP17 55114 hgsc.bcm.edu 37 16 24960732 24960732 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP18 93663 hgsc.bcm.edu 37 6 129963095 129963095 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP19 84986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99006064 99006064 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP19 84986 hgsc.bcm.edu;ucsc.edu 37 10 99019161 99019161 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP19 84986 hgsc.bcm.edu;ucsc.edu 37 10 99025627 99025628 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP20 57569 broad.mit.edu 37 11 110450017 110450017 + 3'UTR SNP C A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP20 57569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 110451607 110451607 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP20 57569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 110451792 110451792 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP20 57569 hgsc.bcm.edu;ucsc.edu 37 11 110451543 110451543 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP21 57584 broad.mit.edu 37 10 25010766 25010766 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP21 57584 broad.mit.edu;hgsc.bcm.edu 37 10 24910118 24910118 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP21 57584 hgsc.bcm.edu 37 10 24880633 24880633 + Intron SNP G G A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP21 57584 hgsc.bcm.edu;ucsc.edu 37 10 24878265 24878265 + Intron SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP21 57584 hgsc.bcm.edu;ucsc.edu 37 10 24886905 24886905 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP22 58504 hgsc.bcm.edu;ucsc.edu 37 10 49763529 49763529 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP22 58504 hgsc.bcm.edu;ucsc.edu 37 10 49812835 49812835 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP23 57636 broad.mit.edu 37 17 36622485 36622485 + Silent SNP G T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP23 57636 broad.mit.edu 37 17 36636039 36636039 + Silent SNP C T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP23 57636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36619105 36619105 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP24 83478 broad.mit.edu 37 4 86851884 86851884 + Intron DEL T - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP24 83478 broad.mit.edu 37 4 86852017 86852017 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP25 9938 broad.mit.edu 37 2 69002199 69002199 + Intron SNP A G G novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP25 9938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 69034592 69034592 + Silent SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP25 9938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 69045086 69045086 + Silent SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP25 9938 hgsc.bcm.edu;ucsc.edu 37 2 69034512 69034512 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP25 9938 hgsc.bcm.edu;ucsc.edu 37 2 69046267 69046267 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP26 23092 broad.mit.edu 37 5 142606708 142606708 + 3'UTR DEL G - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP26 23092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 142150382 142150382 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP26 23092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 142526819 142526819 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP26 23092 hgsc.bcm.edu;ucsc.edu 37 5 142500712 142500712 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP28 79822 broad.mit.edu 37 18 6898615 6898615 + Intron SNP G T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP28 79822 broad.mit.edu 37 18 6898615 6898615 + Intron SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP28 79822 broad.mit.edu;hgsc.bcm.edu 37 18 6873513 6873513 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP28 79822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6859884 6859884 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP28 79822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6870684 6870684 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP29 9411 broad.mit.edu 37 1 94649835 94649835 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP29 9411 broad.mit.edu 37 1 94655748 94655748 + Intron SNP T C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP29 9411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94697168 94697168 + 5'UTR SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP29 9411 broad.mit.edu;ucsc.edu 37 1 94649704 94649707 + Splice_Site DEL TACC - - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 TACC TACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP30 257106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161018362 161018362 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP30 257106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161039395 161039395 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP31 57514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119099820 119099820 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP31 57514 broad.mit.edu;ucsc.edu 37 3 119132967 119132967 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP31 57514 hgsc.bcm.edu 37 3 119133102 119133102 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP31 57514 hgsc.bcm.edu 37 3 119133103 119133103 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP31 57514 hgsc.bcm.edu 37 3 119133104 119133104 + Silent SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP31 57514 hgsc.bcm.edu 37 3 119134491 119134491 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP32 9743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 128839969 128839969 + Silent SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP32 9743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129062035 129062035 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP32 9743 broad.mit.edu 37 11 128838662 128838662 + 3'UTR DEL G - - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGAP33 115703 hgsc.bcm.edu;ucsc.edu 37 19 36275074 36275074 + Silent SNP G G A rs62112163 bycluster;byfrequency;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP33 115703 hgsc.bcm.edu 37 19 36273301 36273301 + Missense_Mutation SNP C C A rs150993015 unknown;alternate_allele TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP36 158763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 130218268 130218268 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP39 80728 broad.mit.edu;hgsc.bcm.edu 37 8 145759519 145759519 + Silent SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP39 80728 hgsc.bcm.edu 37 8 145773342 145773344 + In_Frame_Del DEL CTG CTG - rs138155129 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP40 343578 hgsc.bcm.edu 37 20 37257655 37257655 + Splice_Region SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP40 343578 hgsc.bcm.edu 37 20 37278495 37278495 + 3'Promoter SNP C C T novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP42 143872 hgsc.bcm.edu 37 11 100784248 100784248 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP42 143872 hgsc.bcm.edu;ucsc.edu 37 11 100641130 100641130 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP44 9912 hgsc.bcm.edu 37 17 12847385 12847385 + Splice_Site SNP G G T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 32560363 32560363 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 32560575 32560575 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 32563340 32563340 + Nonsense_Mutation SNP T T G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 32619205 32619205 + Silent SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu 37 14 32561296 32561296 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu 37 14 32561296 32561296 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu 37 14 32561313 32561313 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu 37 14 32561316 32561316 + Nonsense_Mutation SNP G G T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu 37 14 32561340 32561340 + Missense_Mutation SNP G G A rs78337553 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu;ucsc.edu 37 14 32561340 32561340 + Missense_Mutation SNP G G A rs78337553 unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP5 394 hgsc.bcm.edu;ucsc.edu 37 14 32562855 32562855 + Missense_Mutation SNP A A T rs141239257 unknown;alternate_allele TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP6 395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 11204520 11204520 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGAP6 395 hgsc.bcm.edu;ucsc.edu 37 X 11196235 11196235 + Silent SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP8 23779 hgsc.bcm.edu 37 22 45255656 45255656 + Missense_Mutation SNP G G T rs148303608 unknown;alternate_allele TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGAP9 64333 broad.mit.edu;hgsc.bcm.edu 37 12 57871324 57871324 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGDIA 396 hgsc.bcm.edu;ucsc.edu 37 17 79826812 79826814 + In_Frame_Del DEL GTC GTC - novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 GTC GTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGDIB 397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15103538 15103538 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGDIG 398 broad.mit.edu 37 16 332799 332799 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF10 9639 broad.mit.edu 37 8 1817555 1817555 + Intron SNP G A A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF10 9639 hgsc.bcm.edu;ucsc.edu 37 8 1844542 1844542 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF10 9639 hgsc.bcm.edu;ucsc.edu 37 8 1881967 1881967 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF10L 55160 broad.mit.edu;hgsc.bcm.edu 37 1 17990994 17990994 + Silent SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF11 9826 broad.mit.edu 37 1 157014204 157014204 + 5'UTR SNP A T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF11 9826 broad.mit.edu 37 1 157014457 157014457 + 5'UTR DEL A - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF11 9826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156909401 156909401 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF11 9826 hgsc.bcm.edu 37 1 156907115 156907115 + Missense_Mutation SNP T T C rs63387061 bycluster;byfrequency;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF11 9826 hgsc.bcm.edu;ucsc.edu 37 1 156914213 156914214 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF15 22899 broad.mit.edu 37 17 8216716 8216716 + Intron SNP G C C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF15 22899 hgsc.bcm.edu;ucsc.edu 37 17 8216256 8216256 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF16 27237 hgsc.bcm.edu 37 1 3385432 3385432 + Intron SNP G G T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF17 9828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73066597 73066597 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF17 9828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73066671 73066671 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF17 9828 hgsc.bcm.edu 37 11 73020375 73020376 + In_Frame_Ins INS - - CTC novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF17 9828 hgsc.bcm.edu 37 11 73021006 73021007 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF17 9828 hgsc.bcm.edu 37 11 73021667 73021667 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF17 9828 hgsc.bcm.edu 37 11 73068089 73068089 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF17 9828 hgsc.bcm.edu;ucsc.edu 37 11 73022114 73022114 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF18 23370 broad.mit.edu 37 19 7535249 7535249 + Intron SNP C A A rs12972299 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF18 23370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7509264 7509264 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF1 9138 broad.mit.edu;hgsc.bcm.edu 37 19 42408211 42408211 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF25 115557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58004440 58004440 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF25 115557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58010243 58010243 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF25 115557 hgsc.bcm.edu 37 12 58010627 58010628 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF26 26084 hgsc.bcm.edu 37 3 153870723 153870723 + Splice_Site SNP T T A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF2 9181 broad.mit.edu 37 1 155932492 155932492 + Silent SNP C G G rs75834511 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF3 50650 broad.mit.edu;hgsc.bcm.edu 37 3 56789107 56789107 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF3 50650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 56779390 56779390 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF35 445328 broad.mit.edu 37 7 143884368 143884368 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF37 389337 hgsc.bcm.edu 37 5 148980668 148980668 + Intron SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF37 389337 hgsc.bcm.edu 37 5 149001322 149001323 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF4 50649 broad.mit.edu;hgsc.bcm.edu 37 2 131704249 131704249 + Intron SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF5 7984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 144077075 144077075 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF5 7984 hgsc.bcm.edu 37 7 144061222 144061222 + Missense_Mutation SNP A A G rs1209412 bycluster TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF5 7984 hgsc.bcm.edu 37 7 144061222 144061222 + Missense_Mutation SNP A A G rs1209412 bycluster TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF5 7984 hgsc.bcm.edu;ucsc.edu 37 7 144070338 144070338 + Silent SNP A A G rs179371 bysubmitter TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARHGEF6 9459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135829736 135829736 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF7 8874 broad.mit.edu 37 13 111946452 111946452 + 3'UTR DEL C - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARHGEF7 8874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111932908 111932908 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF7 8874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111953859 111953859 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARHGEF7 8874 hgsc.bcm.edu;ucsc.edu 37 13 111944499 111944500 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID1A 8289 broad.mit.edu;hgsc.bcm.edu 37 1 27094308 27094308 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ARID1A 8289 broad.mit.edu;hgsc.bcm.edu 37 1 27097703 27097703 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARID1A 8289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27099852 27099852 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARID1A 8289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27106271 27106271 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ARID1A 8289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27107213 27107213 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARID1A 8289 hgsc.bcm.edu 37 1 27087419 27087420 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 GG GG GG - GG GG Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ARID1A 8289 hgsc.bcm.edu 37 1 27099056 27099056 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID ARID1A 8289 hgsc.bcm.edu 37 1 27106455 27106455 + Silent SNP A A C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27057952 27057952 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27099430 27099430 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM SOLID ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27105569 27105570 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 TC TC TC - TC TC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27106460 27106460 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27106545 27106545 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID ARID1B 57492 broad.mit.edu;hgsc.bcm.edu 37 6 157469827 157469827 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1B 57492 broad.mit.edu;hgsc.bcm.edu 37 6 157520041 157520041 + Silent SNP G G C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1B 57492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 157511244 157511244 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1B 57492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 157522543 157522543 + Frame_Shift_Del DEL G G - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID1B 57492 hgsc.bcm.edu;ucsc.edu 37 6 157505418 157505418 + Silent SNP C C G rs142391292 byfrequency;alternate_allele TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID2 196528 broad.mit.edu 37 12 46299067 46299067 + 3'UTR DEL A - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARID2 196528 broad.mit.edu 37 12 46299067 46299067 + 3'UTR DEL A - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARID2 196528 broad.mit.edu 37 12 46299067 46299067 + 3'UTR DEL A - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARID2 196528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46245701 46245701 + Silent SNP C C A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID2 196528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46245726 46245726 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID2 196528 hgsc.bcm.edu 37 12 46123828 46123828 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID2 196528 hgsc.bcm.edu;ucsc.edu 37 12 46230650 46230650 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID2 196528 hgsc.bcm.edu;ucsc.edu 37 12 46230714 46230714 + Silent SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID3A 1820 hgsc.bcm.edu 37 19 964302 964302 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID3A 1820 hgsc.bcm.edu 37 19 971949 971950 + In_Frame_Ins INS - - GCA novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID3B 10620 hgsc.bcm.edu 37 15 74836314 74836316 + In_Frame_Del DEL CAA CAA - novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 CAA CAA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID4A 5926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58830901 58830901 + Silent SNP T T A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID4A 5926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58831552 58831552 + Silent SNP A A C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID4A 5926 hgsc.bcm.edu;ucsc.edu 37 14 58790270 58790270 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID4A 5926 hgsc.bcm.edu;ucsc.edu 37 14 58831047 58831047 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID4B 51742 hgsc.bcm.edu 37 1 235345429 235345429 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID4B 51742 hgsc.bcm.edu;ucsc.edu 37 1 235420512 235420512 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID5A 10865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97217964 97217964 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID5B 84159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63851221 63851221 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARID5B 84159 hgsc.bcm.edu;ucsc.edu 37 10 63661481 63661481 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARID5B 84159 hgsc.bcm.edu;ucsc.edu 37 10 63845486 63845486 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARIH1 25820 broad.mit.edu 37 15 72873082 72873082 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARIH1 25820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72847625 72847625 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARIH1 25820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72848195 72848195 + Silent SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARIH1 25820 hgsc.bcm.edu 37 15 72879658 72879658 + downstream SNP A A T rs76528369 unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARIH2 10425 broad.mit.edu 37 3 48964875 48964875 + Intron DEL T - - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARIH2 10425 broad.mit.edu 37 3 48964875 48964875 + Intron DEL T - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARIH2 10425 broad.mit.edu 37 3 48964875 48964875 + Intron DEL T - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL11 115761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 50204841 50204841 + Silent SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL13A 392509 hgsc.bcm.edu 37 X 100240888 100240889 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL1 400 hgsc.bcm.edu;ucsc.edu 37 12 101790252 101790252 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARL15 54622 hgsc.bcm.edu 37 5 53247307 53247307 + Intron SNP A A T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL15 54622 hgsc.bcm.edu;ucsc.edu 37 5 53409047 53409047 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL15 54622 hgsc.bcm.edu;ucsc.edu 37 5 53409049 53409049 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL16 339231 hgsc.bcm.edu 37 17 79650800 79650800 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL17A 51326 broad.mit.edu 37 17 44630632 44630632 + 3'UTR SNP C T T rs62073353 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL17A 51326 broad.mit.edu 37 17 44630632 44630632 + 3'UTR SNP C T T rs62073353 unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL17A 51326 broad.mit.edu 37 17 44630635 44630635 + 3'UTR SNP A G G rs62073354 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL17A 51326 broad.mit.edu 37 17 44630635 44630635 + 3'UTR SNP A G G rs62073354 unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL17A 51326 broad.mit.edu 37 17 44630635 44630635 + 3'UTR SNP A G G rs62073354 unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL17A 51326 broad.mit.edu 37 17 44630635 44630635 + 3'UTR SNP A G G rs62073354 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL17A 51326 broad.mit.edu 37 17 44630635 44630635 + 3'UTR SNP A G G rs62073354 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL2 402 broad.mit.edu;hgsc.bcm.edu 37 11 64786159 64786159 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL4C 10123 broad.mit.edu 37 2 235403251 235403251 + 3'UTR DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL6(dist=97504) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 97614877 97614877 + IGR SNP A A T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL6IP1 23204 broad.mit.edu 37 16 18804527 18804527 + 3'UTR SNP C A A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARL6IP6 151188 hgsc.bcm.edu;ucsc.edu 37 2 153591619 153591620 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL8B 55207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 5215726 5215726 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARL9 132946 hgsc.bcm.edu 37 4 57377454 57377454 + 5'UTR SNP C C A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMC10 83787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 102716238 102716238 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC10 83787 hgsc.bcm.edu 37 7 102738906 102738906 + Missense_Mutation SNP A A G rs149661299 byfrequency TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMC2 84071 broad.mit.edu 37 6 109294817 109294817 + 3'UTR SNP A T T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARMC3 219681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 23321851 23321851 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC4 55130 broad.mit.edu 37 10 28101114 28101115 + 3'UTR DEL TT - - rs147333449 bycluster;by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARMC4 55130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28229610 28229610 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC4 55130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28233812 28233812 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC4 55130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28270411 28270411 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC4 55130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28274097 28274097 + Silent SNP A A G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC4 55130 hgsc.bcm.edu 37 10 28250531 28250532 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC4 55130 hgsc.bcm.edu 37 10 28257853 28257853 + Missense_Mutation SNP G G C rs57067036 bycluster;byfrequency TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMC4 55130 hgsc.bcm.edu;ucsc.edu 37 10 28233854 28233854 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMC6 93436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19166161 19166161 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMC6 93436 hgsc.bcm.edu 37 19 19165108 19165108 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMC8 25852 broad.mit.edu 37 3 138014950 138014950 + 3'UTR DEL T - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARMC8 25852 hgsc.bcm.edu 37 3 138014726 138014726 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMC8 25852 hgsc.bcm.edu;ucsc.edu 37 3 137963939 137963939 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARMCX2 9823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100912452 100912452 + Silent SNP G G A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMCX3 51566 broad.mit.edu;hgsc.bcm.edu 37 X 100879926 100879926 + 5'UTR SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMCX3 51566 broad.mit.edu;hgsc.bcm.edu 37 X 100880895 100880895 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMCX3 51566 hgsc.bcm.edu;ucsc.edu 37 X 100880719 100880719 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMCX5 64860 broad.mit.edu 37 X 101858509 101858509 + Silent SNP A T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARMCX5 64860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101857826 101857826 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMCX5 64860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101857839 101857841 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARMCX6 54470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100871360 100871360 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARNT2 9915 broad.mit.edu;hgsc.bcm.edu 37 15 80886042 80886042 + 3'UTR SNP G G T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARNT2 9915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 80762712 80762712 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ARNT2 9915 hgsc.bcm.edu;ucsc.edu 37 15 80762590 80762590 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ARNT 405 hgsc.bcm.edu 37 1 150789853 150789853 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARNTL2 56938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27529304 27529304 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARNTL 406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 13375946 13375946 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARPC1B 10095 hgsc.bcm.edu;ucsc.edu 37 7 98984318 98984318 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARPC2 10109 broad.mit.edu 37 2 219118832 219118832 + 3'UTR DEL A - - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARPC2 10109 broad.mit.edu 37 2 219118832 219118832 + 3'UTR DEL A - - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARPC2 10109 broad.mit.edu 37 2 219118832 219118832 + 3'UTR DEL A - - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARPC2 10109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219093573 219093573 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARPC3 10094 hgsc.bcm.edu;ucsc.edu 37 12 110873032 110873032 + Intron SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARPC5L 81873 hgsc.bcm.edu;ucsc.edu 37 9 127637307 127637307 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARPP19 10776 broad.mit.edu 37 15 52839924 52839925 + 3'UTR DEL GT - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARPP19 10776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52844224 52844224 + Silent SNP C C T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARPP21 10777 hgsc.bcm.edu 37 3 35780926 35780926 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARPP21 10777 hgsc.bcm.edu;ucsc.edu 37 3 35835347 35835347 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARR3 407 hgsc.bcm.edu 37 X 69489571 69489571 + Intron SNP T T G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARR3 407 hgsc.bcm.edu 37 X 69496589 69496589 + Splice_Region SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARR3 407 hgsc.bcm.edu 37 X 69500914 69500914 + Intron SNP T T C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARRDC3 57561 hgsc.bcm.edu;ucsc.edu 37 5 90671371 90671371 + Silent SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARRDC4 91947 broad.mit.edu 37 15 98514489 98514489 + 3'UTR SNP A G G rs3803385 bycluster;byfrequency;by1000genomes TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARRDC5 645432 broad.mit.edu;hgsc.bcm.edu 37 19 4891119 4891119 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSA 410 hgsc.bcm.edu 37 22 51065093 51065093 + Silent SNP C C G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSB 411 broad.mit.edu 37 5 78076073 78076073 + 3'UTR SNP G T T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARSB 411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78076227 78076227 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSD 414 broad.mit.edu 37 X 2838604 2838604 + Intron SNP C A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARSD 414 hgsc.bcm.edu 37 X 2825370 2825370 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2832696 2832696 + Silent SNP T T C rs113031742 bycluster;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2832696 2832696 + Silent SNP T T C rs113031742 bycluster;by1000genomes TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2833631 2833631 + Silent SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2835964 2835964 + Silent SNP G G A rs73632972 bycluster;byfrequency;by1000genomes TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSD 414 hgsc.bcm.edu 37 X 2835993 2835993 + Silent SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2835995 2835995 + Missense_Mutation SNP C C A rs150899882 byfrequency TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2835999 2836007 + In_Frame_Del DEL CCACGCCGG CCACGCCGG - rs113556864 unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 CCACGCCGG CCACGCCGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSD 414 hgsc.bcm.edu 37 X 2835999 2836007 + In_Frame_Del DEL CCACGCCGG CCACGCCGG - rs113556864 unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 CCACGCCGG CCACGCCGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSD 414 hgsc.bcm.edu 37 X 2836007 2836007 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2836007 2836007 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2836047 2836047 + Missense_Mutation SNP C C T rs67359049 bycluster;byfrequency;by1000genomes TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSD 414 hgsc.bcm.edu 37 X 2836060 2836060 + Silent SNP G G A rs113318393 bycluster;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSE 415 broad.mit.edu 37 X 2856294 2856294 + Frame_Shift_Del DEL C - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARSF 416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 2990179 2990179 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSF 416 hgsc.bcm.edu 37 X 3007535 3007535 + Splice_Site SNP A A G novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSF 416 hgsc.bcm.edu 37 X 3007543 3007543 + Silent SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSG 22901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66303656 66303656 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSH 347527 broad.mit.edu 37 X 2928175 2928175 + Missense_Mutation SNP G T T rs143754233 byfrequency;alternate_allele TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARSH 347527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 2951181 2951181 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSI 340075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149677720 149677720 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ARSI 340075 hgsc.bcm.edu;ucsc.edu 37 5 149677805 149677805 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARSJ 79642 broad.mit.edu 37 4 114900260 114900261 + 5'UTR INS - AA AA novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARSK 153642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 94918640 94918640 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ART1 417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3681532 3681532 + Silent SNP C C T rs139469651 unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ART3 419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77003637 77003637 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ART3 419 hgsc.bcm.edu;ucsc.edu 37 4 76943106 76943106 + Intron SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ART5 116969 broad.mit.edu 37 11 3659828 3659828 + 3'UTR SNP C G G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARTN 9048 broad.mit.edu 37 1 44401676 44401676 + Intron SNP G A A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ARTN 9048 hgsc.bcm.edu 37 1 44401722 44401722 + Silent SNP T T A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARV1 64801 hgsc.bcm.edu 37 1 231131724 231131724 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARVCF 421 hgsc.bcm.edu;ucsc.edu 37 22 19969473 19969473 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ARX 170302 broad.mit.edu 37 X 25022841 25022841 + Missense_Mutation SNP C A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AS3MT 57412 hgsc.bcm.edu;ucsc.edu 37 10 104632879 104632879 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASAH1 427 broad.mit.edu 37 8 17914872 17914872 + 3'UTR DEL A - - rs5889765 unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASAH1 427 broad.mit.edu 37 8 17914872 17914872 + 3'UTR DEL A - - rs5889765 unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASAH1 427 broad.mit.edu 37 8 17914872 17914872 + 3'UTR DEL A - - rs5889765 unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASAH1 427 hgsc.bcm.edu 37 8 17942197 17942203 + Frame_Shift_Del DEL AGCAAAG AGCAAAG - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 AGCAAAG AGCAAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP1 50807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 131073178 131073178 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP1 50807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 131073179 131073179 + Silent SNP C C G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP1 50807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 131136342 131136342 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP1 50807 hgsc.bcm.edu;ucsc.edu 37 8 131130417 131130417 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASAP2 8853 broad.mit.edu 37 2 9533614 9533614 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASAP2 8853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9484692 9484692 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP2 8853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9531296 9531296 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP2 8853 hgsc.bcm.edu 37 2 9543400 9543400 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP2 8853 hgsc.bcm.edu;ucsc.edu 37 2 9460399 9460399 + Intron SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASAP3 55616 hgsc.bcm.edu 37 1 23756377 23756377 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASB10 136371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150873237 150873237 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB11 140456 hgsc.bcm.edu;ucsc.edu 37 X 15320875 15320875 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASB12 142689 hgsc.bcm.edu 37 X 63445177 63445177 + Silent SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASB15 142685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123267202 123267202 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB15 142685 hgsc.bcm.edu;ucsc.edu 37 7 123257653 123257653 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASB1 51665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239353054 239353054 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB16 92591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42249555 42249555 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB16 92591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42249679 42249679 + Silent SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB3 51130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 53955964 53955964 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB3 51130 hgsc.bcm.edu;ucsc.edu 37 2 53956692 53956697 + In_Frame_Del DEL TGTCCA TGTCCA - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 TGTCCA TGTCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB4 51666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 95157534 95157534 + Silent SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB6 140459 broad.mit.edu;hgsc.bcm.edu 37 9 132397747 132397747 + 3'UTR SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB6 140459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 132401522 132401522 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB8 140461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48543458 48543458 + Silent SNP T T C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASB8 140461 hgsc.bcm.edu;ucsc.edu 37 12 48547222 48547222 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASB9 140462 broad.mit.edu 37 X 15266819 15266819 + Intron SNP C T T rs1139868 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASCC1 51008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73912709 73912709 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASCC3 10973 broad.mit.edu 37 6 100957131 100957131 + 3'UTR SNP T C C novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASCC3 10973 broad.mit.edu 37 6 100966004 100966005 + Frame_Shift_Del DEL CA - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASCC3 10973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 101095127 101095127 + Silent SNP C C A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASCC3 10973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 101110412 101110412 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASCC3 10973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 101248212 101248212 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASCC3 10973 hgsc.bcm.edu;ucsc.edu 37 6 101049749 101049749 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASCC3 10973 hgsc.bcm.edu;ucsc.edu 37 6 101296058 101296058 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASCL3 56676 hgsc.bcm.edu 37 11 8959460 8959460 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASGR2 433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7010447 7010447 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASGR2 433 hgsc.bcm.edu 37 17 7012073 7012073 + Splice_Region SNP G G T rs2304980 bycluster;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASGR2 433 hgsc.bcm.edu 37 17 7012073 7012073 + Splice_Region SNP G G T rs2304980 bycluster;by1000genomes TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASH1L 55870 broad.mit.edu;hgsc.bcm.edu 37 1 155491017 155491017 + Silent SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155308160 155308160 + Silent SNP G G C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155313396 155313396 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155385552 155385552 + Silent SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155449218 155449218 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155450216 155450216 + Silent SNP G G C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH1L 55870 hgsc.bcm.edu;ucsc.edu 37 1 155319244 155319244 + Silent SNP A A T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASH1L 55870 hgsc.bcm.edu;ucsc.edu 37 1 155449150 155449150 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASH2L 9070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 37967896 37967896 + Splice_Site SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASH2L 9070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 37974168 37974168 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASL 435 hgsc.bcm.edu 37 7 65554635 65554635 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASMT 438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1748789 1748789 + Silent SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASMTL 8623 broad.mit.edu 37 X 1531852 1531853 + Intron DEL AG - - rs111299510 unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASMTL 8623 hgsc.bcm.edu 37 X 1522164 1522164 + In_Frame_Del DEL A A - rs113329185 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASMTL 8623 hgsc.bcm.edu 37 X 1537002 1537002 + Silent SNP C C G rs71298853 unknown;alternate_allele TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASMTL 8623 hgsc.bcm.edu 37 X 1537002 1537002 + Silent SNP C C G rs71298853 unknown;alternate_allele TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASMTL 8623 hgsc.bcm.edu 37 X 1537881 1537881 + Missense_Mutation SNP C C T rs4503285 bycluster;byfrequency;by1000genomes TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASMTL 8623 hgsc.bcm.edu 37 X 1546876 1546876 + Silent SNP A A G rs5948863 bycluster;by1000genomes TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASNS 440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 97487671 97487671 + Silent SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASNS 440 hgsc.bcm.edu;ucsc.edu 37 7 97487606 97487606 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASNSD1 54529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 190532647 190532647 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASNSD1 54529 broad.mit.edu;ucsc.edu 37 2 190532496 190532496 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASPA 443 hgsc.bcm.edu;ucsc.edu 37 17 3392558 3392558 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASPDH 554235 broad.mit.edu 37 19 51017905 51017905 + 5'Flank SNP C G G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASPH 444 broad.mit.edu 37 8 62491435 62491435 + Intron SNP C T T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASPH 444 broad.mit.edu 37 8 62492264 62492264 + Intron SNP C G G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASPH 444 broad.mit.edu 37 8 62492299 62492299 + Intron SNP T C C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASPH 444 broad.mit.edu;hgsc.bcm.edu 37 8 62577779 62577779 + 3'UTR SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPH 444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 62588827 62588827 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPH 444 hgsc.bcm.edu 37 8 62588723 62588724 + In_Frame_Ins INS - - TTC novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPH 444 hgsc.bcm.edu;ucsc.edu 37 8 62577970 62577970 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASPHD2 57168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26830026 26830026 + Missense_Mutation SNP A A G novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197060067 197060067 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197087083 197087083 + Silent SNP A A G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197091068 197091068 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197091070 197091070 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197093276 197093276 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPM 259266 hgsc.bcm.edu 37 1 197055989 197055989 + Silent SNP A A G novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASPM 259266 hgsc.bcm.edu;ucsc.edu 37 1 197072929 197072929 + Missense_Mutation SNP G G A rs41299625 bycluster;byfrequency;by1000genomes TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPN 54829 hgsc.bcm.edu 37 9 95237024 95237024 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPN 54829 hgsc.bcm.edu;ucsc.edu 37 9 95233022 95233022 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASPSCR1 79058 broad.mit.edu;hgsc.bcm.edu 37 17 79941541 79941541 + Silent SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASPSCR1 79058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79954308 79954308 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASS1 445 broad.mit.edu;hgsc.bcm.edu 37 9 133333803 133333803 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASS1 445 broad.mit.edu;hgsc.bcm.edu 37 9 133333871 133333871 + Silent SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASS1 445 hgsc.bcm.edu;ucsc.edu 37 9 133339550 133339550 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASTE1 28990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130743620 130743620 + Missense_Mutation SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTL 431705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96789864 96789864 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTL 431705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96789912 96789912 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN1 460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176993851 176993851 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN1 460 hgsc.bcm.edu;ucsc.edu 37 1 177020197 177020197 + Intron SNP T T G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN1 460 hgsc.bcm.edu;ucsc.edu 37 1 177057425 177057425 + Intron SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119204736 119204736 + Silent SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119413893 119413893 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119802150 119802150 + Silent SNP A A G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119976970 119976970 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASTN2 23245 hgsc.bcm.edu 37 9 119976858 119976858 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASXL1 171023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31015950 31015950 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL1 171023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31023504 31023504 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ASXL1 171023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31025137 31025137 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ASXL1 171023 hgsc.bcm.edu 37 20 31021493 31021493 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASXL1 171023 hgsc.bcm.edu 37 20 31024481 31024481 + Silent SNP G G T rs147326327 unknown;alternate_allele TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASXL2 55252 broad.mit.edu;hgsc.bcm.edu 37 2 26029201 26029201 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL2 55252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 25967152 25967152 + Nonsense_Mutation SNP G G C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL2 55252 hgsc.bcm.edu;ucsc.edu 37 2 25973133 25973136 + Frame_Shift_Del DEL CACT CACT - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 CACT CACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL2 55252 hgsc.bcm.edu;ucsc.edu 37 2 26068366 26068368 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL3 80816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 31311969 31311969 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL3 80816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 31318800 31318800 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL3 80816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 31320355 31320355 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL3 80816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 31324962 31324962 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ASXL3 80816 hgsc.bcm.edu 37 18 31324446 31324446 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASXL3 80816 hgsc.bcm.edu;ucsc.edu 37 18 31311982 31311982 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASXL3 80816 hgsc.bcm.edu;ucsc.edu 37 18 31319454 31319454 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASXL3 80816 hgsc.bcm.edu;ucsc.edu 37 18 31326427 31326427 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ASZ1 136991 broad.mit.edu 37 7 117003505 117003505 + 3'UTR SNP A T T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ASZ1 136991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117025841 117025841 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD1 84896 broad.mit.edu;hgsc.bcm.edu 37 10 89550085 89550085 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD2B 54454 hgsc.bcm.edu 37 2 24108653 24108653 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATAD3A 55210 broad.mit.edu 37 1 1469606 1469606 + 3'UTR SNP C T T rs35611435 bycluster;byfrequency;by1000genomes TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATAD3A 55210 broad.mit.edu;ucsc.edu 37 1 1459280 1459280 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATAD3C 219293 hgsc.bcm.edu 37 1 1391244 1391244 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATAD3C 219293 hgsc.bcm.edu 37 1 1391612 1391612 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD3C 219293 hgsc.bcm.edu 37 1 1396229 1396229 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATAD3C 219293 hgsc.bcm.edu 37 1 1403814 1403814 + Silent SNP C C T rs146537972 by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29161396 29161396 + Silent SNP G G T rs114289357 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29182285 29182285 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29196281 29196281 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29220506 29220506 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATAD5 79915 hgsc.bcm.edu 37 17 29161255 29161255 + Silent SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATAD5 79915 hgsc.bcm.edu 37 17 29220591 29220591 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATAD5 79915 hgsc.bcm.edu;ucsc.edu 37 17 29161956 29161961 + In_Frame_Del DEL CAATGT CAATGT - rs72427574 bycluster;by1000genomes TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 CAATGT CAATGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATCAY 85300 broad.mit.edu 37 19 3924772 3924772 + 3'UTR DEL T - - rs11306255 unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATCAY 85300 broad.mit.edu;hgsc.bcm.edu 37 19 3907733 3907733 + Silent SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATCAY 85300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3905489 3905489 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATE1 11101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123503288 123503288 + Silent SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATE1 11101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123683801 123683801 + Silent SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF1 466 broad.mit.edu 37 12 51213515 51213515 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATF1 466 hgsc.bcm.edu;ucsc.edu 37 12 51213502 51213502 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATF2 1386 broad.mit.edu 37 2 175939224 175939224 + 3'UTR DEL A - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATF2 1386 broad.mit.edu 37 2 175939224 175939224 + 3'UTR DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATF2 1386 broad.mit.edu;hgsc.bcm.edu 37 2 175957974 175957974 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF3 467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212792385 212792385 + Intron SNP C C G novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF4 468 hgsc.bcm.edu 37 22 39917910 39917912 + In_Frame_Del DEL GTG GTG - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 GTG GTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF4 468 hgsc.bcm.edu 37 22 39917950 39917951 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF5 22809 hgsc.bcm.edu 37 19 50435817 50435817 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATF6 22926 hgsc.bcm.edu;ucsc.edu 37 1 161736220 161736220 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATF6 22926 hgsc.bcm.edu;ucsc.edu 37 1 161762092 161762092 + Silent SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATF6B 1388 broad.mit.edu 37 6 32083396 32083396 + 3'UTR SNP C T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATF6B 1388 broad.mit.edu 37 6 32083400 32083400 + 3'UTR SNP C A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATF6B 1388 broad.mit.edu 37 6 32095464 32095464 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATF6B 1388 broad.mit.edu;hgsc.bcm.edu 37 6 32088498 32088498 + Intron SNP G G A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF6B 1388 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32084267 32084267 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF6B 1388 hgsc.bcm.edu 37 6 32088654 32088655 + Frame_Shift_Ins INS - - G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF7 11016 hgsc.bcm.edu;ucsc.edu 37 12 53937186 53937186 + Silent SNP C C G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATF7IP2 80063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10524570 10524570 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATF7IP2 80063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10524764 10524764 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATF7IP2 80063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10525162 10525162 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATF7IP2 80063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10567377 10567377 + Missense_Mutation SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATF7IP2 80063 hgsc.bcm.edu;ucsc.edu 37 16 10525097 10525097 + Nonsense_Mutation SNP C C G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM SOLID ATF7IP 55729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14577910 14577910 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF7IP 55729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14578241 14578241 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF7IP 55729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14613557 14613557 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF7IP 55729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14613931 14613931 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATF7IP 55729 hgsc.bcm.edu;ucsc.edu 37 12 14650805 14650805 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG10 83734 broad.mit.edu 37 5 81283695 81283699 + Intron DEL CAGGC - - rs34898483 unknown;alternate_allele TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 CAGGC CAGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG10 83734 broad.mit.edu 37 5 81283700 81283701 + Intron INS - G G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG10 83734 broad.mit.edu 37 5 81283703 81283704 + Intron DEL TG - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG10 83734 broad.mit.edu 37 5 81443521 81443521 + Intron DEL G - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG12 9140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 115177263 115177263 + RNA SNP A A T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG13 9776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46666953 46666953 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG13 9776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46691049 46691049 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG13 9776 hgsc.bcm.edu 37 11 46693802 46693802 + Splice_Region SNP C C A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATG16L1 55054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234178666 234178666 + Silent SNP G G T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG16L2 89849 hgsc.bcm.edu;ucsc.edu 37 11 72539757 72539757 + Intron SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATG2A 23130 broad.mit.edu;hgsc.bcm.edu 37 11 64681821 64681821 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG2A 23130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64673943 64673943 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG2A 23130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64676580 64676580 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG2A 23130 hgsc.bcm.edu 37 11 64681629 64681629 + Silent SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATG2B 55102 broad.mit.edu 37 14 96752043 96752043 + 3'UTR SNP G A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG2B 55102 broad.mit.edu;hgsc.bcm.edu 37 14 96789012 96789012 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG2B 55102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96789061 96789061 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG2B 55102 hgsc.bcm.edu 37 14 96757148 96757148 + Intron SNP C C A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG3 64422 broad.mit.edu;ucsc.edu 37 3 112256693 112256693 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG3 64422 hgsc.bcm.edu 37 3 112269053 112269053 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATG4B 23192 broad.mit.edu;hgsc.bcm.edu 37 2 242606247 242606247 + Silent SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG4B 23192 hgsc.bcm.edu 37 2 242610738 242610738 + Silent SNP T T C rs11538896 bycluster;by1000genomes TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATG4C 84938 broad.mit.edu;hgsc.bcm.edu 37 1 63269471 63269471 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG4C 84938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 63300488 63300488 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG4D 84971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10663721 10663721 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG7 10533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 11348441 11348441 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG7 10533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 11354777 11354777 + Splice_Site SNP G G T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG7 10533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 11389435 11389435 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATG9B 285973 broad.mit.edu 37 7 150709313 150709314 + 3'UTR INS - T T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG9B 285973 broad.mit.edu 37 7 150709314 150709314 + 3'UTR DEL T - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG9B 285973 broad.mit.edu 37 7 150714122 150714122 + Splice_Site SNP C T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATG9B 285973 broad.mit.edu 37 7 150715068 150715068 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATHL1 80162 broad.mit.edu;ucsc.edu 37 11 289868 289868 + Missense_Mutation SNP A C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATHL1 80162 hgsc.bcm.edu 37 11 293251 293251 + Intron SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATIC 471 broad.mit.edu 37 2 216177160 216177160 + Intron SNP G A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATIC 471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216184411 216184411 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATIC 471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216211658 216211658 + Silent SNP T T C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108106450 108106450 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108127062 108127062 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108170468 108170468 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108196255 108196255 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108199913 108199913 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108201113 108201113 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108202714 108202714 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108203617 108203617 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108216609 108216609 + Missense_Mutation SNP C C G rs141534716 unknown;alternate_allele TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108236074 108236074 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATM 472 broad.mit.edu;ucsc.edu 37 11 108115600 108115600 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx ATM 472 hgsc.bcm.edu 37 11 108206572 108206572 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATM 472 hgsc.bcm.edu;ucsc.edu 37 11 108127063 108127063 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATM 472 hgsc.bcm.edu;ucsc.edu 37 11 108153496 108153496 + Silent SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID ATM 472 hgsc.bcm.edu;ucsc.edu 37 11 108206594 108206594 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM SOLID ATMIN 23300 broad.mit.edu 37 16 81074846 81074846 + Intron SNP A C C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATMIN 23300 hgsc.bcm.edu 37 16 81069751 81069751 + Silent SNP C C G rs150799758 byfrequency TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATMIN 23300 hgsc.bcm.edu 37 16 81077767 81077774 + Frame_Shift_Del DEL TAAATCAA TAAATCAA - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 TAAATCAA TAAATCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATN1 1822 hgsc.bcm.edu 37 12 7045894 7045894 + Silent SNP G G A rs139947770 byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATN1 1822 hgsc.bcm.edu 37 12 7045918 7045918 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATN1 1822 hgsc.bcm.edu 37 12 7048337 7048337 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATOH1 474 broad.mit.edu;hgsc.bcm.edu 37 4 94751143 94751143 + downstream SNP G G A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP10A 57194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 25959134 25959134 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP10B 23120 broad.mit.edu;hgsc.bcm.edu 37 5 160115094 160115094 + 5'UTR SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP10B 23120 broad.mit.edu;ucsc.edu 37 5 160061395 160061395 + Silent SNP G A A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP10D 57205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47527622 47527622 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP10D 57205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47538705 47538705 + Silent SNP C C G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP10D 57205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47559972 47559972 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP10D 57205 hgsc.bcm.edu 37 4 47560001 47560001 + Silent SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11A 23250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 113464970 113464970 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11A 23250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 113481084 113481084 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11A 23250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 113485756 113485756 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11A 23250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 113508719 113508719 + Silent SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11A 23250 hgsc.bcm.edu;ucsc.edu 37 13 113532519 113532519 + Intron SNP C C G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP11B 23200 broad.mit.edu 37 3 182631843 182631843 + Intron SNP A C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP11B 23200 hgsc.bcm.edu 37 3 182563289 182563289 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP11B 23200 hgsc.bcm.edu 37 3 182584081 182584081 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP11B 23200 hgsc.bcm.edu;ucsc.edu 37 3 182616538 182616538 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11C 286410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 138827926 138827926 + Silent SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP11C 286410 hgsc.bcm.edu;ucsc.edu 37 X 138840003 138840003 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP11C 286410 hgsc.bcm.edu;ucsc.edu 37 X 138908947 138908947 + Silent SNP T T C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP12A 479 broad.mit.edu 37 13 25285760 25285760 + 3'UTR SNP A T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25266644 25266644 + Silent SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25272913 25272913 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25281239 25281239 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25284712 25284712 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP12A 479 broad.mit.edu;ucsc.edu 37 13 25276072 25276072 + Splice_Site SNP G T T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP12A 479 hgsc.bcm.edu;ucsc.edu 37 13 25285629 25285629 + Intron SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A1 57130 broad.mit.edu;hgsc.bcm.edu 37 19 19767887 19767887 + Silent SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A2 23400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17322948 17322948 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A2 23400 hgsc.bcm.edu 37 1 17313021 17313021 + Silent SNP G G A rs115985012 bycluster;byfrequency;by1000genomes TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP13A2 23400 hgsc.bcm.edu 37 1 17318322 17318322 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP13A2 23400 hgsc.bcm.edu 37 1 17331235 17331235 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP13A2 23400 hgsc.bcm.edu;ucsc.edu 37 1 17332192 17332192 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP13A3 79572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 194149610 194149610 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A3 79572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 194177901 194177901 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A3 79572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 194182931 194182931 + 5'UTR SNP A A T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A4 84239 broad.mit.edu;hgsc.bcm.edu 37 3 193120483 193120483 + Silent SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A4 84239 broad.mit.edu;hgsc.bcm.edu 37 3 193177001 193177001 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A4 84239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193188727 193188727 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A4 84239 broad.mit.edu;ucsc.edu 37 3 193158423 193158423 + Missense_Mutation SNP A C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP13A4 84239 hgsc.bcm.edu 37 3 193174889 193174889 + Silent SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP13A4 84239 hgsc.bcm.edu;ucsc.edu 37 3 193151706 193151706 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP13A4 84239 hgsc.bcm.edu;ucsc.edu 37 3 193159265 193159267 + In_Frame_Del DEL AGG AGG - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 AGG AGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A5 344905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193007828 193007828 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A5 344905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193039503 193039503 + Nonsense_Mutation SNP C C A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A5 344905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193052840 193052840 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP13A5 344905 hgsc.bcm.edu;ucsc.edu 37 3 193036861 193036861 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A1 476 broad.mit.edu 37 1 116941357 116941357 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1A1 476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 116932958 116932958 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A1 476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 116932982 116932982 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A1 476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 116939249 116939249 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A1 476 hgsc.bcm.edu 37 1 116943758 116943758 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A1 476 hgsc.bcm.edu;ucsc.edu 37 1 116932279 116932279 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A1 476 hgsc.bcm.edu;ucsc.edu 37 1 116936278 116936278 + Silent SNP T T C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A2 477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160091025 160091025 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A2 477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160098797 160098797 + Missense_Mutation SNP C C T rs121918618 unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A2 477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160100072 160100072 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A2 477 broad.mit.edu;ucsc.edu 37 1 160093040 160093040 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1A2 477 hgsc.bcm.edu;ucsc.edu 37 1 160109458 160109458 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A3 478 broad.mit.edu;hgsc.bcm.edu 37 19 42490382 42490382 + Splice_Site SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A3 478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42482093 42482093 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A3 478 hgsc.bcm.edu 37 19 42490052 42490052 + Silent SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A3 478 hgsc.bcm.edu;ucsc.edu 37 19 42473672 42473672 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP1A4 480 broad.mit.edu 37 1 160143468 160143468 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1A4 480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160144415 160144415 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1A4 480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160151511 160151511 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1B1 481 broad.mit.edu 37 1 169076145 169076145 + RNA SNP C T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1B1 481 broad.mit.edu 37 1 169100955 169100955 + RNA SNP A T T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1B1 481 broad.mit.edu 37 1 169101269 169101270 + RNA INS - G G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1B1 481 broad.mit.edu 37 1 169101269 169101270 + RNA INS - G G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP1B1 481 broad.mit.edu;hgsc.bcm.edu 37 1 169100845 169100845 + 3'UTR SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1B4 23439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119500536 119500536 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1B4 23439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119504657 119504657 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP1B4 23439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119509282 119509282 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2A1 487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28898565 28898565 + Silent SNP C C A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2A1 487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28909648 28909648 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2A1 487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28913241 28913241 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2A1 487 hgsc.bcm.edu 37 16 28909647 28909647 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2A1 487 hgsc.bcm.edu 37 16 28912226 28912226 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2A1 487 hgsc.bcm.edu 37 16 28913193 28913193 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2A1 487 hgsc.bcm.edu 37 16 28913193 28913193 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2A2 488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110783864 110783864 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2A2 488 broad.mit.edu;ucsc.edu 37 12 110720427 110720427 + Splice_Site SNP G C C novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP2A2 488 hgsc.bcm.edu 37 12 110778549 110778549 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2A2 488 hgsc.bcm.edu;ucsc.edu 37 12 110778740 110778740 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2A3 489 broad.mit.edu;hgsc.bcm.edu 37 17 3851044 3851044 + Silent SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2B1 490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 90003742 90003742 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2B2 491 broad.mit.edu 37 3 10401807 10401807 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP2B3 492 hgsc.bcm.edu 37 X 152811579 152811579 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2B3 492 hgsc.bcm.edu 37 X 152815550 152815550 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2B4 493 broad.mit.edu 37 1 203652191 203652191 + 5'UTR SNP G T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP2B4 493 hgsc.bcm.edu;ucsc.edu 37 1 203652386 203652387 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2C2 9914 hgsc.bcm.edu 37 16 84495698 84495698 + Silent SNP G G C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP2C2 9914 hgsc.bcm.edu 37 16 84497252 84497252 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP2C2 9914 hgsc.bcm.edu;ucsc.edu 37 16 84472822 84472822 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP4A 495 broad.mit.edu 37 19 36041444 36041444 + 3'UTR SNP G T T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP4A 495 broad.mit.edu 37 19 36046428 36046428 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP4A 495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36046491 36046491 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP4A 495 broad.mit.edu;ucsc.edu 37 19 36054147 36054147 + Silent SNP C T T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP4A 495 hgsc.bcm.edu 37 19 36049926 36049927 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP5A1 498 broad.mit.edu 37 18 43664128 43664129 + 3'UTR INS - T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5A1 498 broad.mit.edu;hgsc.bcm.edu 37 18 43669480 43669480 + Intron SNP T T A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5A1 498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43666148 43666148 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5A1 498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43668204 43668204 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5B 506 broad.mit.edu;hgsc.bcm.edu 37 12 57033957 57033957 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5B 506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57036241 57036241 + Splice_Site SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5C1 509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7839091 7839091 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5EP2 432369 broad.mit.edu 37 13 28519646 28519646 + RNA DEL A - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5EP2 432369 broad.mit.edu 37 13 28519646 28519646 + RNA DEL A - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5G2 517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54063038 54063038 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5J2-PTCD1 100526740 hgsc.bcm.edu;ucsc.edu 37 7 99017741 99017741 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP5J 522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 27096945 27096945 + 3'UTR SNP A A C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5J 522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 27096949 27096949 + 3'UTR SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5S 27109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50779730 50779730 + RNA SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5S 27109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50790719 50790719 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5SL 55101 broad.mit.edu 37 19 41938395 41938396 + Intron DEL GT - - rs113869037 unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5SL 55101 broad.mit.edu 37 19 41938473 41938474 + Intron INS - GTGT GTGT novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5SL 55101 broad.mit.edu 37 19 41938473 41938474 + Intron INS - GTGT GTGT novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5SL 55101 broad.mit.edu 37 19 41938473 41938474 + Intron INS - GTGT GTGT novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5SL 55101 broad.mit.edu 37 19 41938473 41938474 + Intron INS - GTGT GTGT novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP5SL 55101 broad.mit.edu;hgsc.bcm.edu 37 19 41937131 41937131 + downstream SNP C C A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5SL 55101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41942328 41942328 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP5SL 55101 hgsc.bcm.edu;ucsc.edu 37 19 41945825 41945825 + RNA SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6AP1 537 hgsc.bcm.edu 37 X 153662580 153662580 + Silent SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP6AP1L 92270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 81614047 81614047 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V0A1 535 broad.mit.edu 37 17 40647651 40647651 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP6V0A1 535 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40639358 40639358 + Silent SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V0A4 50617 broad.mit.edu;hgsc.bcm.edu 37 7 138417644 138417644 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V0A4 50617 broad.mit.edu;ucsc.edu 37 7 138417832 138417832 + Silent SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP6V0B 533 hgsc.bcm.edu;ucsc.edu 37 1 44442331 44442331 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V0D2 245972 hgsc.bcm.edu 37 8 87153748 87153748 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP6V1A 523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113499964 113499964 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1A 523 hgsc.bcm.edu;ucsc.edu 37 3 113528254 113528254 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1B1 525 broad.mit.edu 37 2 71188870 71188870 + Intron SNP G A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP6V1B1 525 broad.mit.edu;hgsc.bcm.edu 37 2 71163082 71163082 + 5'UTR SNP T T G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1B1 525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71190718 71190718 + Silent SNP C C A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1B1 525 broad.mit.edu;ucsc.edu 37 2 71190307 71190307 + Missense_Mutation SNP G C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP6V1B1 525 hgsc.bcm.edu 37 2 71186165 71186165 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP6V1B1 525 hgsc.bcm.edu;ucsc.edu 37 2 71188741 71188741 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP6V1B2 526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 20075680 20075680 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1B2 526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 20077883 20077883 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1C2 245973 hgsc.bcm.edu;ucsc.edu 37 2 10923347 10923347 + Silent SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP6V1D 51382 broad.mit.edu 37 14 67805178 67805178 + 3'UTR SNP G A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP6V1D 51382 hgsc.bcm.edu;ucsc.edu 37 14 67819728 67819728 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP6V1G3 127124 broad.mit.edu 37 1 198492507 198492507 + 3'UTR SNP A T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP6V1H 51606 hgsc.bcm.edu 37 8 54727237 54727237 + Silent SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP7A 538 broad.mit.edu 37 X 77264922 77264922 + Intron DEL T - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP7A 538 hgsc.bcm.edu 37 X 77254041 77254041 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7A 538 hgsc.bcm.edu 37 X 77284798 77284799 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7A 538 hgsc.bcm.edu 37 X 77284798 77284799 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52511675 52511675 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52518307 52518307 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52539025 52539025 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52539139 52539139 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP7B 540 hgsc.bcm.edu 37 13 52509781 52509781 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8A1 10396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 42509034 42509034 + Silent SNP G G A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8A1 10396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 42581897 42581897 + Silent SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8A1 10396 hgsc.bcm.edu;ucsc.edu 37 4 42487678 42487678 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8A2 51761 broad.mit.edu 37 13 26145884 26145884 + Intron SNP T C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26104186 26104186 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26148985 26148985 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26152975 26152975 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26413708 26413708 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8A2 51761 broad.mit.edu;ucsc.edu 37 13 26125480 26125480 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8A2 51761 hgsc.bcm.edu;ucsc.edu 37 13 26594067 26594067 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B1 5205 broad.mit.edu 37 18 55399206 55399206 + 5'Flank SNP C G G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8B1 5205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55319399 55319399 + Silent SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATP8B1 5205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55361849 55361849 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATP8B1 5205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55399034 55399034 + Silent SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B1 5205 hgsc.bcm.edu;ucsc.edu 37 18 55321263 55321263 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B2 57198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154313463 154313463 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B2 57198 hgsc.bcm.edu 37 1 154310130 154310130 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B2 57198 hgsc.bcm.edu 37 1 154316516 154316516 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B3 148229 broad.mit.edu 37 19 1792020 1792020 + Missense_Mutation SNP G A A rs185225335 by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8B3 148229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1807166 1807166 + Splice_Site SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B3 148229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1811645 1811645 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B3 148229 hgsc.bcm.edu 37 19 1783237 1783239 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B3 148229 hgsc.bcm.edu 37 19 1806083 1806083 + Intron SNP A A C rs56193578 bycluster;byfrequency;by1000genomes TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B4 79895 broad.mit.edu 37 15 50152132 50152132 + 3'UTR DEL A - - rs34981519 bycluster;alternate_allele TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8B4 79895 broad.mit.edu 37 15 50188400 50188400 + Intron DEL A - - rs35582055 unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8B4 79895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50168715 50168715 + Silent SNP C C T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B4 79895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50336887 50336887 + Silent SNP T T A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP8B4 79895 broad.mit.edu;ucsc.edu 37 15 50211075 50211075 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8B4 79895 hgsc.bcm.edu;ucsc.edu 37 15 50154547 50154547 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B4 79895 hgsc.bcm.edu;ucsc.edu 37 15 50215637 50215637 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP8B5P 158381 broad.mit.edu 37 9 35449946 35449946 + RNA SNP G C C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP8B5P 158381 broad.mit.edu 37 9 35450233 35450233 + RNA SNP A T T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP9A 10079 broad.mit.edu 37 20 50217347 50217348 + 3'UTR DEL AC - - rs66637813 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATP9A 10079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 50292728 50292728 + Silent SNP A A T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP9A 10079 hgsc.bcm.edu 37 20 50234018 50234018 + Intron SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATP9B 374868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 76870367 76870367 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATP9B 374868 hgsc.bcm.edu;ucsc.edu 37 18 77108115 77108115 + Intron SNP G G C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATPAF1 64756 broad.mit.edu 37 1 47101285 47101285 + 3'UTR SNP C A A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATPAF2 91647 broad.mit.edu;hgsc.bcm.edu 37 17 17929601 17929601 + Intron SNP C C A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATPAF2 91647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17929649 17929649 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATPAF2 91647 hgsc.bcm.edu 37 17 17929671 17929671 + Silent SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATPAF2 91647 hgsc.bcm.edu;ucsc.edu 37 17 17927959 17927961 + In_Frame_Del DEL ATT ATT - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 ATT ATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATPBD4 89978 broad.mit.edu 37 15 35664071 35664072 + 3'UTR INS - T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATR 545 broad.mit.edu 37 3 142169063 142169063 + Intron SNP C A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATR 545 broad.mit.edu 37 3 142169376 142169376 + Intron SNP C T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATR 545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142168328 142168328 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATR 545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142184019 142184019 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A A T A A Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq ATR 545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142281209 142281209 + Silent SNP A A T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATR 545 hgsc.bcm.edu 37 3 142254950 142254950 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID ATR 545 hgsc.bcm.edu;ucsc.edu 37 3 142241591 142241591 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATR 545 hgsc.bcm.edu;ucsc.edu 37 3 142266605 142266605 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRIP 84126 hgsc.bcm.edu 37 3 48506401 48506401 + Nonsense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATRN 8455 broad.mit.edu 37 20 3629805 3629805 + 3'UTR DEL A - - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATRN 8455 hgsc.bcm.edu 37 20 3589626 3589626 + Intron SNP G G A rs28875840 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRN 8455 hgsc.bcm.edu 37 20 3602000 3602000 + Intron SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATRN 8455 hgsc.bcm.edu 37 20 3627468 3627468 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATRNL1 26033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116880014 116880014 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRNL1 26033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116881513 116881513 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRNL1 26033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 117024695 117024695 + Silent SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRNL1 26033 hgsc.bcm.edu 37 10 116930981 116930981 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRNL1 26033 hgsc.bcm.edu;ucsc.edu 37 10 117075206 117075206 + Silent SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATRX 546 broad.mit.edu 37 X 76763680 76763680 + 3'UTR DEL A - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATRX 546 broad.mit.edu 37 X 76777788 76777788 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76813066 76813066 + Silent SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76952169 76952169 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76855280 76855280 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76875909 76875909 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76890185 76890185 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76939124 76939124 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATRX 546 hgsc.bcm.edu;ucsc.edu 37 X 76938884 76938884 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN1 6310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 16328126 16328126 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN1 6310 broad.mit.edu;ucsc.edu 37 6 16327452 16327452 + Missense_Mutation SNP G C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATXN1 6310 hgsc.bcm.edu 37 6 16328275 16328275 + Silent SNP C C T rs146853248 byfrequency;alternate_allele TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATXN1L 342371 hgsc.bcm.edu 37 16 71884268 71884268 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATXN2 6311 broad.mit.edu 37 12 111892734 111892735 + Intron DEL CG - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATXN2 6311 broad.mit.edu 37 12 112036115 112036115 + Intron DEL C - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATXN2 6311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111893890 111893890 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN2 6311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111893891 111893891 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN2 6311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111923629 111923629 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN2L 11273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28841977 28841977 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN2L 11273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28847661 28847661 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN2L 11273 broad.mit.edu;ucsc.edu 37 16 28847500 28847500 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATXN2L 11273 hgsc.bcm.edu;ucsc.edu 37 16 28847383 28847383 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN3 4287 hgsc.bcm.edu;ucsc.edu 37 14 92537387 92537387 + Missense_Mutation SNP T T G rs12896588 bycluster;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN3 4287 hgsc.bcm.edu;ucsc.edu 37 14 92537388 92537388 + Missense_Mutation SNP T T C rs12896589 bycluster;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN7 6314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 63981575 63981575 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN7 6314 hgsc.bcm.edu;ucsc.edu 37 3 63938069 63938069 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATXN7 6314 hgsc.bcm.edu;ucsc.edu 37 3 63973813 63973813 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN7L1 222255 broad.mit.edu 37 7 105401704 105401704 + Intron SNP G C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ATXN7L1 222255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 105254533 105254533 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN7L1 222255 hgsc.bcm.edu 37 7 105254438 105254438 + Silent SNP C C T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATXN7L1 222255 hgsc.bcm.edu;ucsc.edu 37 7 105516948 105516948 + Silent SNP T T C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATXN7L1(dist=2259) 0 hgsc.bcm.edu;ucsc.edu 37 7 105519290 105519290 + IGR SNP G G T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN7L2 127002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110031529 110031529 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ATXN7L2 127002 hgsc.bcm.edu 37 1 110029637 110029637 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ATXN7L3 56970 broad.mit.edu 37 17 42270017 42270018 + 3'UTR INS - T T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AUH 549 hgsc.bcm.edu 37 9 94087667 94087667 + Silent SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AUP1 550 broad.mit.edu;ucsc.edu 37 2 74754424 74754424 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AURKA 6790 broad.mit.edu 37 20 54945046 54945046 + 3'UTR SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AURKAIP1 54998 hgsc.bcm.edu 37 1 1309259 1309259 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AURKAIP1 54998 hgsc.bcm.edu 37 1 1310074 1310074 + Intron SNP C C G rs2765035 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AURKB 9212 hgsc.bcm.edu 37 17 8110133 8110133 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AURKC 6795 broad.mit.edu 37 19 57742514 57742514 + 5'UTR DEL G - - rs59074707 unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AURKC 6795 hgsc.bcm.edu 37 19 57742489 57742489 + 5'UTR SNP C C T rs58264281 bycluster TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AURKC 6795 hgsc.bcm.edu 37 19 57742489 57742489 + 5'UTR SNP C C T rs58264281 bycluster TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AUTS2 26053 broad.mit.edu 37 7 70255256 70255256 + Silent SNP C T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AUTS2 26053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 70228160 70228160 + Silent SNP G G A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AUTS2 26053 hgsc.bcm.edu;ucsc.edu 37 7 69364395 69364395 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AVEN 57099 broad.mit.edu 37 15 34158738 34158738 + 3'UTR SNP T G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVIL 10677 broad.mit.edu 37 12 58204236 58204236 + Silent SNP C T T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVIL 10677 broad.mit.edu;hgsc.bcm.edu 37 12 58207208 58207208 + Splice_Site SNP T T C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVIL 10677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58201174 58201174 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVIL 10677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58202005 58202005 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVIL 10677 hgsc.bcm.edu 37 12 58203422 58203423 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVIL 10677 hgsc.bcm.edu 37 12 58203422 58203423 + Frame_Shift_Ins INS - - C novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVIL 10677 hgsc.bcm.edu 37 12 58207097 58207097 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVL9 23080 broad.mit.edu 37 7 32615623 32615623 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVL9 23080 broad.mit.edu 37 7 32663045 32663045 + Intron SNP G T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVL9 23080 broad.mit.edu 37 7 32695599 32695599 + Intron SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVL9 23080 broad.mit.edu 37 7 32956881 32956881 + Intron SNP A G G rs2598302 bycluster;byfrequency;by2hit2allele TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVL9 23080 hgsc.bcm.edu;ucsc.edu 37 7 32584314 32584314 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVPR1A 552 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 63543859 63543859 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AVPR2 554 broad.mit.edu 37 X 153171715 153171715 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AVPR2 554 hgsc.bcm.edu 37 X 153170604 153170604 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AXIN1 8312 broad.mit.edu;hgsc.bcm.edu 37 16 397045 397045 + 5'UTR SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXIN1 8312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 396290 396290 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXIN1 8312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 396291 396291 + Silent SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXIN1 8312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 396564 396564 + Silent SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXIN1 8312 hgsc.bcm.edu 37 16 347908 347908 + Missense_Mutation SNP C C T rs146189916 unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID AXIN2 8313 broad.mit.edu 37 17 63525463 63525463 + 3'UTR DEL A - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AXIN2 8313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63532473 63532473 + Silent SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXIN2 8313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63554465 63554465 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXL 558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41727096 41727096 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AXL 558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41763495 41763495 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AZGP1 563 broad.mit.edu 37 7 99573623 99573623 + Silent SNP G T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AZI1 22994 broad.mit.edu 37 17 79169644 79169644 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AZI1 22994 broad.mit.edu;hgsc.bcm.edu 37 17 79166553 79166553 + Silent SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AZI1 22994 broad.mit.edu;ucsc.edu 37 17 79180636 79180636 + Missense_Mutation SNP A T T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx AZI1 22994 hgsc.bcm.edu;ucsc.edu 37 17 79168674 79168677 + Frame_Shift_Del DEL GACA GACA - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 GACA GACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AZI2 64343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 28368357 28368357 + Silent SNP T T C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AZIN1 51582 hgsc.bcm.edu;ucsc.edu 37 8 103846984 103846984 + Intron SNP C C G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq AZU1 566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 830861 830861 + Missense_Mutation SNP G G A rs145363133 unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B2M 567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45007701 45007701 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B2M 567 hgsc.bcm.edu 37 15 45007705 45007705 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GALNT2 148789 broad.mit.edu 37 1 235611535 235611536 + 3'UTR INS - AAA AAA rs71576473 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GALNT2 148789 broad.mit.edu 37 1 235611535 235611536 + 3'UTR INS - AAA AAA rs71576473 unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GALNT2 148789 broad.mit.edu 37 1 235611771 235611771 + 3'UTR SNP A T T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GALNT2 148789 broad.mit.edu;ucsc.edu 37 1 235618936 235618936 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GALT2 8707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 193150003 193150003 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GALT2 8707 hgsc.bcm.edu;ucsc.edu 37 1 193149452 193149452 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GALT4 8705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33246066 33246066 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GALTL 145173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 31903770 31903770 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GAT1 27087 broad.mit.edu 37 11 134253723 134253723 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GAT1 27087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134252621 134252621 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GAT2 135152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71665632 71665632 + Silent SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GAT2 135152 broad.mit.edu;ucsc.edu 37 6 71571408 71571408 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GAT3 26229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62384532 62384532 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT2 10678 broad.mit.edu 37 2 62450343 62450343 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GNT2 10678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 62450134 62450134 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT3 10331 broad.mit.edu 37 19 17918663 17918663 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GNT5 84002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182987783 182987783 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT6 192134 broad.mit.edu;hgsc.bcm.edu 37 11 76751055 76751055 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT6 192134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76750646 76750646 + Silent SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT7 93010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232263303 232263303 + Missense_Mutation SNP G G C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT8 374907 broad.mit.edu;hgsc.bcm.edu 37 19 41931921 41931921 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT8 374907 broad.mit.edu;ucsc.edu 37 19 41932579 41932579 + Silent SNP G A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B3GNT8 374907 hgsc.bcm.edu 37 19 41931983 41931984 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B3GNT8 374907 hgsc.bcm.edu 37 19 41932063 41932063 + Silent SNP A A G rs45563938 bycluster;byfrequency;by1000genomes TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B3GNT8 374907 hgsc.bcm.edu 37 19 41932611 41932611 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B3GNTL1 146712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80915092 80915092 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT1 2583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58020623 58020623 + Silent SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT2 124872 hgsc.bcm.edu 37 17 47246988 47246988 + Silent SNP C C A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B4GALNT2 124872 hgsc.bcm.edu;ucsc.edu 37 17 47241500 47241500 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B4GALNT3 283358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 657232 657232 + Silent SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT3 283358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 667220 667220 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT3 283358 hgsc.bcm.edu;ucsc.edu 37 12 657254 657254 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B4GALNT4 338707 broad.mit.edu 37 11 379656 379656 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B4GALNT4 338707 broad.mit.edu 37 11 379925 379925 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B4GALNT4 338707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 372684 372684 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT4 338707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 375478 375478 + Silent SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT4 338707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 375649 375649 + Silent SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALNT4 338707 hgsc.bcm.edu 37 11 375544 375544 + Intron SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B4GALT3 8703 hgsc.bcm.edu;ucsc.edu 37 1 161141850 161141851 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALT4 8702 hgsc.bcm.edu 37 3 118931440 118931440 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B4GALT4 8702 hgsc.bcm.edu 37 3 118945777 118945779 + In_Frame_Del DEL TGT TGT - novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 TGT TGT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B4GALT5 9334 broad.mit.edu 37 20 48330184 48330184 + Missense_Mutation SNP A T T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx B4GALT5 9334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 48273175 48273175 + Silent SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALT6 9331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29207086 29207086 + Splice_Site SNP T T G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq B4GALT6 9331 hgsc.bcm.edu;ucsc.edu 37 18 29218625 29218625 + Silent SNP C C T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID B9D1 27077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19250621 19250621 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAAT 570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104130484 104130484 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BACE1 23621 broad.mit.edu 37 11 117160082 117160082 + 3'UTR DEL T - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BACE1 23621 hgsc.bcm.edu;ucsc.edu 37 11 117165880 117165894 + In_Frame_Del DEL GCCTTCCCAGTTGGA GCCTTCCCAGTTGGA - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 GCCTTCCCAGTTGGA GCCTTCCCAGTTGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BACE2 25825 broad.mit.edu 37 21 42647760 42647760 + 3'UTR DEL A - - rs11448311 bycluster;by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BACE2 25825 broad.mit.edu 37 21 42647760 42647760 + 3'UTR DEL A - - rs11448311 bycluster;by1000genomes TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BACE2 25825 broad.mit.edu 37 21 42647760 42647760 + 3'UTR DEL A - - rs11448311 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BACE2 25825 hgsc.bcm.edu 37 21 42598262 42598262 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BACH1 571 broad.mit.edu 37 21 30715189 30715189 + 3'UTR SNP C T T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BACH1 571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30693729 30693729 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BACH1 571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30714928 30714928 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BACH1 571 hgsc.bcm.edu 37 21 30714963 30714963 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BACH2 60468 broad.mit.edu 37 6 90660625 90660625 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BACH2 60468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90647879 90647879 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BACH2 60468 hgsc.bcm.edu 37 6 90660846 90660856 + Frame_Shift_Del DEL CGGCCCCAGCT CGGCCCCAGCT - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 CGGCCCCAGCT CGGCCCCAGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAG1 573 broad.mit.edu;hgsc.bcm.edu 37 9 33264197 33264197 + Intron SNP A A T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAG4 9530 broad.mit.edu 37 8 38034599 38034599 + Missense_Mutation SNP G A A novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAG4 9530 broad.mit.edu 37 8 38068103 38068103 + 3'UTR SNP G T T rs111385150 unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAG4 9530 broad.mit.edu 37 8 38068103 38068103 + 3'UTR SNP G T T rs111385150 unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAG4 9530 broad.mit.edu 37 8 38068103 38068103 + 3'UTR SNP G T T rs111385150 unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAG4 9530 broad.mit.edu 37 8 38068124 38068124 + 3'UTR SNP G A A rs80041165 bycluster;by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAG6 7917 hgsc.bcm.edu 37 6 31609641 31609642 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAGE2 85319 broad.mit.edu 37 21 11020869 11020869 + 3'UTR SNP G A A rs9981999 bycluster;by2hit2allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11026722 11026722 + Splice_Site SNP C A A rs2698612 unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11026737 11026737 + 3'UTR SNP C G G rs78440390 byfrequency TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11026767 11026767 + 3'UTR SNP T C C rs56385395 unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11026782 11026782 + 3'UTR SNP G A A rs75965389 byfrequency TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11049516 11049516 + 3'UTR SNP G A A rs72629031 bycluster;byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11098733 11098733 + 5'UTR SNP G A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11098827 11098827 + 5'UTR SNP C T T rs79274499 bycluster;byfrequency TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11098827 11098827 + 5'UTR SNP C T T rs79274499 bycluster;byfrequency TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11098863 11098863 + 5'UTR SNP A G G rs75318310 bycluster;byfrequency TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE2 85319 broad.mit.edu 37 21 11098920 11098920 + 5'UTR SNP A G G rs78230864 bycluster;byfrequency TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAGE3 85318 broad.mit.edu;hgsc.bcm.edu 37 21 11049593 11049593 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAGE 574 hgsc.bcm.edu;ucsc.edu 37 21 11098695 11098695 + Intron SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAHCC1 57597 broad.mit.edu 37 17 79423404 79423404 + Frame_Shift_Del DEL A - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAHCC1 57597 broad.mit.edu;hgsc.bcm.edu 37 17 79426336 79426336 + Silent SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAHCC1 57597 hgsc.bcm.edu 37 17 79384938 79384938 + Intron SNP A A G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAHCC1 57597 hgsc.bcm.edu 37 17 79424537 79424537 + Silent SNP C C T rs34224936 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAHD1 22893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40758186 40758186 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAI1 575 hgsc.bcm.edu 37 8 143570438 143570438 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAI2 576 hgsc.bcm.edu 37 1 32193184 32193184 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAI3 577 hgsc.bcm.edu;ucsc.edu 37 6 69685178 69685178 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID BAI3 577 hgsc.bcm.edu;ucsc.edu 37 6 69943308 69943308 + Silent SNP A A T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID BAI3 577 hgsc.bcm.edu;ucsc.edu 37 6 70037699 70037699 + Intron SNP G G A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAIAP2 10458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79027521 79027521 + Silent SNP G G A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAIAP2L1 55971 broad.mit.edu 37 7 97937353 97937353 + Intron SNP G A A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAIAP2L2 80115 broad.mit.edu;hgsc.bcm.edu 37 22 38506582 38506582 + 5'UTR SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAIAP2L2 80115 hgsc.bcm.edu 37 22 38483174 38483174 + Missense_Mutation SNP A A T rs78489217 byfrequency;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAIAP3 8938 broad.mit.edu 37 16 1399321 1399321 + 3'UTR SNP G A A rs149496703 by1000genomes TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAIAP3 8938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1389514 1389514 + Silent SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAIAP3 8938 hgsc.bcm.edu 37 16 1394310 1394310 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAK1 578 broad.mit.edu 37 6 33542988 33542988 + Intron SNP C T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAK1 578 hgsc.bcm.edu 37 6 33545340 33545340 + Silent SNP G G A rs2227925 bycluster;byfrequency;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BANK1 55024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 102751087 102751087 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BANK1 55024 hgsc.bcm.edu;ucsc.edu 37 4 102751231 102751231 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BANP 54971 hgsc.bcm.edu 37 16 88052146 88052146 + Silent SNP C C T rs17850504 bycluster;byfrequency;by1000genomes TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAP1 8314 broad.mit.edu 37 3 52436397 52436397 + Frame_Shift_Del DEL C - - novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C C - C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx BAP1 8314 broad.mit.edu 37 3 52437168 52437168 + Nonsense_Mutation SNP T A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx BAP1 8314 broad.mit.edu 37 3 52443747 52443747 + Missense_Mutation SNP A G G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAP1 8314 broad.mit.edu;hgsc.bcm.edu 37 3 52440295 52440295 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu 37 3 52441261 52441261 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu 37 3 52442512 52442512 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52436345 52436345 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52437163 52437163 + Nonsense_Mutation SNP G G C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52437782 52437782 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52438515 52438515 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52439306 52439306 + Silent SNP A A C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52439311 52439311 + Splice_Site SNP C C A rs9848343 bycluster;alternate_allele TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52439876 52439876 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52439913 52439913 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52441262 52441262 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52441304 52441304 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52442512 52442512 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52442521 52442521 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52442523 52442523 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A A - A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443568 52443568 + Splice_Site SNP A A G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443568 52443568 + Splice_Site SNP A A T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443574 52443574 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443600 52443600 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443866 52443866 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443892 52443892 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443892 52443892 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443894 52443894 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAP1 8314 broad.mit.edu;ucsc.edu 37 3 52443729 52443729 + Splice_Site SNP C T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx BAP1 8314 hgsc.bcm.edu 37 3 52440367 52440367 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID BAP1 8314 hgsc.bcm.edu 37 3 52442585 52442585 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52436689 52436689 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52439219 52439238 + Frame_Shift_Del DEL GCTGCCTGGAGGCTTCACCA GCTGCCTGGAGGCTTCACCA - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 GCTGCCTGGAGGCTTCACCA GCTGCCTGGAGGCTTCACCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52439864 52439864 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T T - T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52441418 52441418 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52441470 52441470 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52442023 52442023 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52442513 52442516 + Frame_Shift_Del DEL TCAC TCAC - novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 TCAC TCAC TCAC - TCAC TCAC Unknown Valid Somatic Phase_I Capture PGM SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52442567 52442567 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52442600 52442600 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52443623 52443647 + In_Frame_Del DEL ACCTGCGATGAGGAAAGGAAAGCAG ACCTGCGATGAGGAAAGGAAAGCAG - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 ACCTGCGATGAGGAAAGGAAAGCAG ACCTGCGATGAGGAAAGGAAAGCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BARD1 580 broad.mit.edu;hgsc.bcm.edu 37 2 215632207 215632207 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BARD1 580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215657073 215657073 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BARD1 580 hgsc.bcm.edu;ucsc.edu 37 2 215595187 215595187 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BARD1 580 hgsc.bcm.edu;ucsc.edu 37 2 215645503 215645523 + In_Frame_Del DEL TGGTGAAGAACATTCAGGCAA TGGTGAAGAACATTCAGGCAA - rs28997575 bycluster;byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 TGGTGAAGAACATTCAGGCAA TGGTGAAGAACATTCAGGCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BARX1 56033 broad.mit.edu 37 9 96715495 96715495 + Intron DEL G - - rs148132681 by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAT1 0 broad.mit.edu;hgsc.bcm.edu 37 6 31507024 31507024 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAT1 0 hgsc.bcm.edu 37 6 31504362 31504363 + Frame_Shift_Ins INS - - AG novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAT1 0 hgsc.bcm.edu 37 6 31504445 31504446 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAT1 0 hgsc.bcm.edu 37 6 31504445 31504446 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAT2 0 broad.mit.edu 37 6 31599818 31599818 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAT2L1 0 hgsc.bcm.edu 37 9 134308050 134308050 + Silent SNP C C G novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 broad.mit.edu 37 1 171526993 171526993 + Silent SNP A C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAT2L2 0 hgsc.bcm.edu 37 1 171509616 171509616 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 hgsc.bcm.edu 37 1 171526902 171526902 + Missense_Mutation SNP C C A rs144754525 unknown;alternate_allele TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 hgsc.bcm.edu 37 1 171526904 171526904 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 hgsc.bcm.edu 37 1 171526904 171526904 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 hgsc.bcm.edu;ucsc.edu 37 1 171505374 171505374 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 hgsc.bcm.edu;ucsc.edu 37 1 171527018 171527018 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT2L2 0 hgsc.bcm.edu;ucsc.edu 37 1 171553099 171553099 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT3 0 broad.mit.edu 37 6 31611899 31611899 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAT3 0 hgsc.bcm.edu 37 6 31610686 31610686 + Missense_Mutation SNP A A G rs116546065 bycluster;byfrequency;by1000genomes TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT3 0 hgsc.bcm.edu 37 6 31610686 31610686 + Missense_Mutation SNP A A G rs116546065 bycluster;byfrequency;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAT4 0 broad.mit.edu 37 6 31629995 31629995 + 3'UTR SNP G A A rs116145214 byfrequency;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAT4 0 broad.mit.edu;ucsc.edu 37 6 31632107 31632107 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAZ1A 11177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 35264070 35264070 + Silent SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ1B 9031 broad.mit.edu;hgsc.bcm.edu 37 7 72892732 72892732 + Silent SNP C C G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ1B 9031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72856668 72856668 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ1B 9031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72877401 72877401 + Missense_Mutation SNP G G C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2A 11176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57007904 57007904 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2A 11176 hgsc.bcm.edu 37 12 56995333 56995334 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2A 11176 hgsc.bcm.edu 37 12 57005554 57005554 + Intron SNP C C G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu 37 2 160176732 160176732 + 3'UTR SNP T A A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAZ2B 29994 broad.mit.edu 37 2 160294710 160294710 + Intron SNP A C C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu 37 2 160289320 160289320 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160194250 160194250 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160205332 160205332 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160240140 160240140 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160245882 160245882 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160268963 160268963 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BAZ2B 29994 broad.mit.edu;ucsc.edu 37 2 160206389 160206389 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BAZ2B 29994 hgsc.bcm.edu;ucsc.edu 37 2 160285736 160285736 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAZ2B 29994 hgsc.bcm.edu;ucsc.edu 37 2 160289486 160289486 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAZ2B 29994 hgsc.bcm.edu;ucsc.edu 37 2 160289488 160289488 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BAZ2B 29994 hgsc.bcm.edu;ucsc.edu 37 2 160289731 160289731 + Silent SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BBOX1 8424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 27147298 27147298 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBOX1 8424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 27147299 27147299 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS10 79738 broad.mit.edu 37 12 76739560 76739560 + 3'UTR SNP A G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BBS10 79738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 76740157 76740157 + Silent SNP A A G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS10 79738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 76741471 76741471 + Silent SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS12 166379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123664977 123664977 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS1 582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66278152 66278152 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS1 582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66287216 66287216 + Silent SNP C C G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS1 582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66291217 66291217 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS1 582 hgsc.bcm.edu;ucsc.edu 37 11 66283143 66283143 + Intron SNP T T C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS2 583 broad.mit.edu 37 16 56532523 56532523 + Intron SNP C G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BBS2 583 broad.mit.edu 37 16 56536004 56536004 + Intron SNP A T T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BBS2 583 broad.mit.edu;hgsc.bcm.edu 37 16 56534715 56534715 + Intron SNP G G A rs190289997 by1000genomes;alternate_allele TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS2 583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56535341 56535341 + Silent SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS2 583 hgsc.bcm.edu;ucsc.edu 37 16 56535332 56535332 + Silent SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BBS4 585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73029249 73029249 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS5 129880 broad.mit.edu 37 2 170361152 170361152 + 3'UTR SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BBS5 129880 broad.mit.edu 37 2 170361179 170361179 + 3'UTR SNP T C C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BBS7 55212 broad.mit.edu;hgsc.bcm.edu 37 4 122782609 122782609 + Intron SNP A A C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS7 55212 hgsc.bcm.edu;ucsc.edu 37 4 122776665 122776665 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BBS9 27241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 33376135 33376135 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBS9 27241 hgsc.bcm.edu 37 7 33195331 33195331 + Intron SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BBX 56987 broad.mit.edu;ucsc.edu 37 3 107463494 107463494 + Silent SNP C T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BBX 56987 hgsc.bcm.edu;ucsc.edu 37 3 107429337 107429337 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAM 4059 broad.mit.edu 37 19 45317871 45317871 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAM 4059 broad.mit.edu 37 19 45323171 45323187 + Intron DEL CATCCCCAACTCATCCT - - rs3842409 bycluster;by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 CATCCCCAACTCATCCT CATCCCCAACTCATCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAM 4059 broad.mit.edu;hgsc.bcm.edu 37 19 45324077 45324077 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAM 4059 hgsc.bcm.edu 37 19 45322915 45322915 + Silent SNP T T A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAN 63827 broad.mit.edu;hgsc.bcm.edu 37 1 156622274 156622274 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAN 63827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156628842 156628842 + Silent SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAN 63827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156628843 156628843 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAN 63827 hgsc.bcm.edu 37 1 156622354 156622354 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAN 63827 hgsc.bcm.edu 37 1 156626162 156626162 + Silent SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAN 63827 hgsc.bcm.edu;ucsc.edu 37 1 156627509 156627509 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAP31 10134 hgsc.bcm.edu 37 X 152981069 152981069 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAR1 9564 broad.mit.edu;hgsc.bcm.edu 37 16 75269312 75269312 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BCAR1 9564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 75276901 75276901 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAR1 9564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 75276902 75276902 + Silent SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAR1 9564 hgsc.bcm.edu 37 16 75276448 75276448 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAR1 9564 hgsc.bcm.edu;ucsc.edu 37 16 75286166 75286166 + 5'Promoter SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94032907 94032907 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94048304 94048304 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94048425 94048425 + Silent SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94057948 94057948 + Silent SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAS1 8537 broad.mit.edu 37 20 52612686 52612686 + Intron SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAS1 8537 broad.mit.edu 37 20 52612686 52612686 + Intron SNP T C C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAS1 8537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 52561451 52561451 + 3'UTR SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAS1 8537 hgsc.bcm.edu;ucsc.edu 37 20 52583461 52583461 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAS2 10286 broad.mit.edu 37 1 115110532 115110533 + 3'UTR DEL AG - - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAS2 10286 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115123970 115123970 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAS2 10286 hgsc.bcm.edu 37 1 115112664 115112664 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAS3 54828 broad.mit.edu 37 17 59465992 59465992 + Intron DEL A - - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAS3 54828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58786584 58786584 + Silent SNP A A T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAS3 54828 broad.mit.edu;ucsc.edu 37 17 59155722 59155722 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAS3 54828 hgsc.bcm.edu;ucsc.edu 37 17 58952009 58952009 + Intron SNP C C G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCAS3 54828 hgsc.bcm.edu;ucsc.edu 37 17 58952032 58952032 + Silent SNP C C A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAS3 54828 hgsc.bcm.edu;ucsc.edu 37 17 58967107 58967107 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCAT1 586 broad.mit.edu 37 12 24970766 24970766 + 3'UTR SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCAT1 586 hgsc.bcm.edu;ucsc.edu 37 12 24985748 24985748 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCCIP 56647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 127520153 127520153 + Silent SNP T T G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCDIN3D 144233 broad.mit.edu 37 12 50236870 50236870 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCHE 590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 165503969 165503969 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCHE 590 hgsc.bcm.edu;ucsc.edu 37 3 165547909 165547915 + Frame_Shift_Del DEL CTTCATT CTTCATT - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 CTTCATT CTTCATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCKDHB 594 broad.mit.edu 37 6 81053717 81053719 + Intron DEL TTG - - rs142572622 unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCKDHB 594 broad.mit.edu 37 6 81053717 81053719 + Intron DEL TTG - - rs142572622 unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCKDHB 594 broad.mit.edu 37 6 81053717 81053719 + Intron DEL TTG - - rs142572622 unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCKDHB 594 hgsc.bcm.edu 37 6 80837253 80837253 + Intron SNP G G T rs9448894 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCKDK 10295 broad.mit.edu 37 16 31123613 31123614 + 3'UTR DEL GA - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCKDK 10295 hgsc.bcm.edu;ucsc.edu 37 16 31123280 31123280 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL10 8915 hgsc.bcm.edu 37 1 85736490 85736490 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL11A 53335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 60780394 60780394 + Silent SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL11B 64919 broad.mit.edu 37 14 99641544 99641546 + In_Frame_Del DEL CTC - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCL11B 64919 broad.mit.edu;hgsc.bcm.edu 37 14 99640783 99640783 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL11B 64919 broad.mit.edu;hgsc.bcm.edu 37 14 99641322 99641322 + Silent SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL11B 64919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 99640573 99640573 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL11B(dist=90806) 0 hgsc.bcm.edu 37 14 99828628 99828628 + IGR SNP C C G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL11B(dist=90810) 0 hgsc.bcm.edu 37 14 99828632 99828632 + IGR SNP G G C rs56949547 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL2 596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 60985489 60985489 + Silent SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL2A1 597 broad.mit.edu;hgsc.bcm.edu 37 15 80253460 80253460 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL2A1 597 broad.mit.edu;hgsc.bcm.edu 37 15 80253472 80253472 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL2L10 10017 hgsc.bcm.edu;ucsc.edu 37 15 52402092 52402092 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL2L12 83596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50169188 50169188 + Silent SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL2L13 23786 hgsc.bcm.edu 37 22 18210157 18210157 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL2L14 79370 hgsc.bcm.edu;ucsc.edu 37 12 12232325 12232325 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL3 602 hgsc.bcm.edu;ucsc.edu 37 19 45262806 45262807 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL6 604 broad.mit.edu 37 3 187446247 187446247 + Nonsense_Mutation SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCL6 604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 187446848 187446848 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL6 604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 187447399 187447399 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL6 604 hgsc.bcm.edu 37 3 187447718 187447718 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL6 604 hgsc.bcm.edu;ucsc.edu 37 3 187443369 187443369 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL7A 605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122481799 122481799 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL7A 605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122492742 122492742 + Silent SNP G G C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL7A 605 hgsc.bcm.edu;ucsc.edu 37 12 122473306 122473306 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL7C 9274 hgsc.bcm.edu 37 16 30899307 30899307 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL9 607 broad.mit.edu 37 1 147096960 147096960 + 3'UTR DEL T - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCL9 607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147096204 147096204 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL9 607 broad.mit.edu;ucsc.edu 37 1 147091598 147091598 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCL9 607 hgsc.bcm.edu 37 1 147095956 147095956 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL9L 283149 broad.mit.edu 37 11 118774003 118774014 + In_Frame_Del DEL CGCCCCCGCCCC - - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CGCCCCCGCCCC CGCCCCCGCCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCL9L 283149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118774132 118774132 + Missense_Mutation SNP C C A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCL9L 283149 broad.mit.edu;ucsc.edu 37 11 118779364 118779364 + Silent SNP C T T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCL9L 283149 hgsc.bcm.edu 37 11 118780615 118780615 + Splice_Region SNP C C A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCL9L 283149 hgsc.bcm.edu 37 11 118780615 118780615 + Splice_Region SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCLAF1 9774 broad.mit.edu 37 6 136590359 136590359 + Intron DEL T - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCLAF1 9774 broad.mit.edu;hgsc.bcm.edu 37 6 136589503 136589503 + Intron SNP G G A novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCLAF1 9774 broad.mit.edu;hgsc.bcm.edu 37 6 136597333 136597333 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCLAF1 9774 broad.mit.edu;hgsc.bcm.edu 37 6 136599666 136599666 + Missense_Mutation SNP C C A rs147857152 unknown;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCLAF1 9774 hgsc.bcm.edu 37 6 136599000 136599000 + Intron SNP T T A rs76840362 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCLAF1 9774 hgsc.bcm.edu 37 6 136599885 136599885 + Missense_Mutation SNP C C A rs150873394 bycluster;byfrequency;by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCLAF1 9774 hgsc.bcm.edu 37 6 136600898 136600898 + Intron SNP C C G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCLAF1 9774 hgsc.bcm.edu 37 6 136600898 136600898 + Intron SNP C C G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCO2 83875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 112064374 112064374 + Silent SNP T T C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCO2 83875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 112072899 112072899 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCOR 54880 hgsc.bcm.edu 37 X 39911578 39911578 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCOR 54880 hgsc.bcm.edu 37 X 39932111 39932111 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCOR 54880 hgsc.bcm.edu;ucsc.edu 37 X 39921479 39921479 + Silent SNP G G C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCOR 54880 hgsc.bcm.edu;ucsc.edu 37 X 39931683 39931683 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCORL1 63035 broad.mit.edu 37 X 129147823 129147823 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCORL1 63035 broad.mit.edu 37 X 129150165 129150165 + Silent SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCORL1 63035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129146951 129146951 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCORL1 63035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129147106 129147106 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCORL1 63035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129148444 129148444 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCORL1 63035 hgsc.bcm.edu 37 X 129148822 129148822 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCORL1 63035 hgsc.bcm.edu 37 X 129149054 129149054 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCORL1 63035 hgsc.bcm.edu 37 X 129189951 129189952 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BCORL1 63035 hgsc.bcm.edu;ucsc.edu 37 X 129155093 129155093 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BCR 613 broad.mit.edu 37 22 23605880 23605880 + Intron SNP C T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCR 613 broad.mit.edu 37 22 23606091 23606091 + Intron SNP G A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCR 613 broad.mit.edu 37 22 23606116 23606116 + Intron SNP C A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BCR 613 hgsc.bcm.edu 37 22 23523338 23523338 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BDH1 622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197238941 197238941 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDH2 56898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104000886 104000886 + Silent SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDH2 56898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104016427 104016427 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDKRB1 623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96730316 96730316 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDKRB2 624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96703508 96703508 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 broad.mit.edu;hgsc.bcm.edu 37 5 70841097 70841097 + Intron SNP T T A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70785431 70785431 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70808132 70808132 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70835434 70835434 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70856036 70856036 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 broad.mit.edu;ucsc.edu 37 5 70840940 70840940 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BDP1 55814 hgsc.bcm.edu 37 5 70805289 70805289 + Splice_Region SNP T T A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BDP1 55814 hgsc.bcm.edu;ucsc.edu 37 5 70806004 70806004 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BDP1 55814 hgsc.bcm.edu;ucsc.edu 37 5 70834851 70834851 + Intron SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BDP1 55814 hgsc.bcm.edu;ucsc.edu 37 5 70855948 70855948 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BEAN 0 broad.mit.edu 37 16 66511499 66511499 + Translation_Start_Site SNP G T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BECN1 8678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40970428 40970428 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEND2 139105 broad.mit.edu;ucsc.edu 37 X 18219956 18219956 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BEND2 139105 hgsc.bcm.edu 37 X 18234663 18234663 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BEND5 79656 hgsc.bcm.edu 37 1 49202004 49202004 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BEND6 221336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56883335 56883335 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEND7 222389 broad.mit.edu 37 10 13483882 13483882 + Intron SNP G A A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BEND7 222389 broad.mit.edu 37 10 13488703 13488707 + Intron DEL AACAC - - rs139274910 bycluster;by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 AACAC AACAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BEND7 222389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13523079 13523079 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEST1 7439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61725623 61725623 + Silent SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEST1 7439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61727371 61727371 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEST1 7439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61730491 61730491 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEST2 54831 hgsc.bcm.edu 37 19 12867047 12867047 + Silent SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BEST2 54831 hgsc.bcm.edu 37 19 12867047 12867047 + Silent SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BEST3 144453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 70087467 70087467 + Silent SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEST3 144453 hgsc.bcm.edu 37 12 70088220 70088220 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BEST3 144453 hgsc.bcm.edu;ucsc.edu 37 12 70048909 70048909 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BFAR 51283 broad.mit.edu 37 16 14744025 14744025 + Intron DEL A - - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BFAR 51283 broad.mit.edu 37 16 14761821 14761821 + 3'UTR SNP C T T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BFAR 51283 hgsc.bcm.edu;ucsc.edu 37 16 14758726 14758726 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BFSP1 631 hgsc.bcm.edu;ucsc.edu 37 20 17475631 17475631 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BFSP1 631 hgsc.bcm.edu;ucsc.edu 37 20 17477609 17477609 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BFSP2 8419 broad.mit.edu 37 3 133119014 133119014 + Silent SNP G A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BGLAP 632 broad.mit.edu;hgsc.bcm.edu 37 1 156212968 156212968 + 3'UTR SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BGLAP 632 hgsc.bcm.edu;ucsc.edu 37 1 156212632 156212632 + Intron SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BGN 633 hgsc.bcm.edu;ucsc.edu 37 X 152773750 152773750 + Silent SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BHLHB9 80823 broad.mit.edu 37 X 102005705 102005705 + 3'UTR SNP G A A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BHLHB9 80823 broad.mit.edu;hgsc.bcm.edu 37 X 102004560 102004560 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BHLHB9 80823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102004677 102004677 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BHLHB9 80823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102005104 102005104 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BHLHE40 8553 broad.mit.edu 37 3 5025495 5025495 + 3'UTR SNP G A A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BHLHE40 8553 hgsc.bcm.edu;ucsc.edu 37 3 5022085 5022085 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BHLHE41 79365 hgsc.bcm.edu 37 12 26277067 26277067 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BHMT 635 broad.mit.edu;hgsc.bcm.edu 37 5 78423703 78423703 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BHMT 635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78407701 78407701 + 5'UTR SNP C C A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICC1 80114 broad.mit.edu 37 10 60573818 60573818 + Intron SNP A G G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BICC1 80114 broad.mit.edu;hgsc.bcm.edu 37 10 60588657 60588657 + 3'UTR SNP C C A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICC1 80114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 60558280 60558280 + Silent SNP A A G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICC1 80114 hgsc.bcm.edu;ucsc.edu 37 10 60556181 60556181 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICD1 636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32369298 32369298 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICD1 636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32490734 32490734 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICD1 636 broad.mit.edu;ucsc.edu 37 12 32491840 32491840 + Silent SNP C A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BICD1 636 hgsc.bcm.edu 37 12 32481360 32481360 + Silent SNP G G C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BICD2 23299 broad.mit.edu 37 9 95475710 95475710 + 3'UTR SNP G A A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BICD2 23299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95491475 95491475 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BICD2 23299 hgsc.bcm.edu 37 9 95481408 95481408 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BID 637 broad.mit.edu;hgsc.bcm.edu 37 22 18220987 18220987 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIN1 274 broad.mit.edu 37 2 127805623 127805623 + 3'UTR DEL T - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BIN1 274 hgsc.bcm.edu 37 2 127808049 127808049 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIN1 274 hgsc.bcm.edu 37 2 127808049 127808049 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIN1 274 hgsc.bcm.edu;ucsc.edu 37 2 127816686 127816686 + Missense_Mutation SNP A A C rs141588262 unknown;alternate_allele TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIN2 51411 broad.mit.edu;hgsc.bcm.edu 37 12 51685607 51685607 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIN2 51411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51690950 51690950 + Splice_Site SNP T T A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIN2 51411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51696509 51696509 + Silent SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIN3 55909 broad.mit.edu 37 8 22479026 22479026 + Missense_Mutation SNP T G G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BIRC2 329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102221673 102221673 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIRC2 329 hgsc.bcm.edu;ucsc.edu 37 11 102221130 102221130 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC2 329 hgsc.bcm.edu;ucsc.edu 37 11 102239106 102239106 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC2 329 hgsc.bcm.edu;ucsc.edu 37 11 102239263 102239263 + Silent SNP T T C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC2 329 hgsc.bcm.edu;ucsc.edu 37 11 102248743 102248743 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC3 330 broad.mit.edu 37 11 102206699 102206699 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BIRC3 330 hgsc.bcm.edu 37 11 102206736 102206736 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32605236 32605236 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32631593 32631593 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32640716 32640716 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32640925 32640925 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32673959 32673959 + Silent SNP C C A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32689778 32689778 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32693017 32693017 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32693677 32693677 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BIRC6 57448 hgsc.bcm.edu 37 2 32641040 32641040 + Missense_Mutation SNP C C T rs34996177 bycluster;byfrequency;by1000genomes TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC6 57448 hgsc.bcm.edu 37 2 32692693 32692693 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BIRC6 57448 hgsc.bcm.edu;ucsc.edu 37 2 32613998 32613998 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID BIVM 54841 broad.mit.edu 37 13 103493397 103493397 + 3'UTR DEL A - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BIVM 54841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103474191 103474191 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BIVM 54841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103474193 103474193 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLID 414899 broad.mit.edu 37 11 121986299 121986299 + 3'UTR SNP T C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BLK 640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11412944 11412944 + Silent SNP C C G rs149756811 unknown;alternate_allele TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLK 640 hgsc.bcm.edu;ucsc.edu 37 8 11415475 11415475 + Silent SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BLM 641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91292871 91292871 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLM 641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91292947 91292947 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLM 641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91295052 91295052 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLM 641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91304206 91304206 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLM 641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91346812 91346812 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BLM 641 hgsc.bcm.edu 37 15 91306293 91306293 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BLM 641 hgsc.bcm.edu 37 15 91306293 91306293 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BLMH 642 broad.mit.edu;hgsc.bcm.edu 37 17 28575967 28575967 + 3'UTR SNP A A G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLMH 642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 28598331 28598331 + Silent SNP T T C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLMH 642 hgsc.bcm.edu;ucsc.edu 37 17 28599644 28599655 + Frame_Shift_Del DEL AGCCTAGAAACA AGCCTAGAAACA - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 AGCCTAGAAACA AGCCTAGAAACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLOC1S1 2647 broad.mit.edu 37 12 56113258 56113258 + 3'UTR SNP T C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BLVRA 644 hgsc.bcm.edu;ucsc.edu 37 7 43827571 43827572 + Frame_Shift_Del DEL GC GC - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BLVRB 645 broad.mit.edu 37 19 40971626 40971626 + 5'UTR SNP G A A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMI1 648 broad.mit.edu 37 10 22605369 22605369 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMP1 649 broad.mit.edu 37 8 22054158 22054158 + Intron SNP C T T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMP1 649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22034151 22034151 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP1 649 hgsc.bcm.edu 37 8 22037969 22037969 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP2 650 hgsc.bcm.edu 37 20 6758921 6758921 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMP2K 55589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79808404 79808404 + Silent SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP2K 55589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79831928 79831928 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP2K 55589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79832708 79832708 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP3 651 broad.mit.edu;hgsc.bcm.edu 37 4 81952663 81952663 + Silent SNP A A T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP3 651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 81967318 81967318 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP3 651 hgsc.bcm.edu 37 4 81967319 81967319 + Silent SNP C C T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMP4 652 broad.mit.edu 37 14 54416602 54416603 + 3'UTR DEL TT - - rs2855526 bycluster TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMP5 653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 55620404 55620404 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP6 654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7727745 7727745 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP6 654 hgsc.bcm.edu 37 6 7834767 7834767 + Intron SNP A A T rs2757568 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMP6 654 hgsc.bcm.edu;ucsc.edu 37 6 7828374 7828374 + Intron SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMP7 655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 55803435 55803435 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP7 655 hgsc.bcm.edu 37 20 55758892 55758892 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMP8B 656 broad.mit.edu 37 1 40225989 40225989 + 3'UTR SNP C A A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMP8B 656 broad.mit.edu 37 1 40226046 40226046 + 3'UTR SNP G A A rs12094291 bycluster;byfrequency;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMP8B 656 broad.mit.edu;hgsc.bcm.edu 37 1 40226077 40226077 + 3'UTR SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMP8B 656 hgsc.bcm.edu 37 1 40229454 40229454 + Missense_Mutation SNP T T C rs17403490 bycluster;byfrequency TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMPER 168667 broad.mit.edu 37 7 34193010 34193011 + 3'UTR INS - TA TA rs34116564 bycluster;by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMPER 168667 broad.mit.edu 37 7 34193010 34193011 + 3'UTR INS - TA TA rs34116564 bycluster;by1000genomes TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMPER 168667 broad.mit.edu 37 7 34193010 34193011 + 3'UTR INS - TA TA rs34116564 bycluster;by1000genomes TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMPER 168667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 34085973 34085973 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPER 168667 hgsc.bcm.edu 37 7 34118573 34118573 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMPER 168667 hgsc.bcm.edu 37 7 34118719 34118730 + In_Frame_Del DEL GCGCATCGCGCT GCGCATCGCGCT - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 GCGCATCGCGCT GCGCATCGCGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPER 168667 hgsc.bcm.edu 37 7 34118719 34118730 + In_Frame_Del DEL GCGCATCGCGCT GCGCATCGCGCT - novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 GCGCATCGCGCT GCGCATCGCGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPR1A 657 hgsc.bcm.edu 37 10 88659781 88659781 + Intron SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPR1B 658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 96035969 96035969 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203407042 203407042 + Missense_Mutation SNP G G T rs146957466 unknown;alternate_allele TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203420922 203420922 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203420924 203420924 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203421005 203421005 + Nonsense_Mutation SNP C C T rs137852748 unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMS1 9790 broad.mit.edu 37 10 43288427 43288427 + Silent SNP T C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMS1 9790 broad.mit.edu 37 10 43328704 43328705 + 3'UTR INS - A A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BMS1 9790 broad.mit.edu;hgsc.bcm.edu 37 10 43318590 43318590 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMS1 9790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 43292488 43292488 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMS1 9790 hgsc.bcm.edu 37 10 43315792 43315792 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMS1 9790 hgsc.bcm.edu;ucsc.edu 37 10 43293976 43293976 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BMX 660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15540571 15540571 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BMX 660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15549469 15549469 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BNC1 646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83933213 83933213 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BNC1 646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83935682 83935682 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BNC1 646 hgsc.bcm.edu 37 15 83933199 83933199 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BNC1 646 hgsc.bcm.edu;ucsc.edu 37 15 83926300 83926300 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BNC1 646 hgsc.bcm.edu;ucsc.edu 37 15 83932843 83932843 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BNC2 54796 hgsc.bcm.edu;ucsc.edu 37 9 16419303 16419303 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BNIP1 662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 172578593 172578593 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOC 91653 broad.mit.edu 37 3 112993348 112993348 + Nonsense_Mutation SNP C G G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BOC 91653 broad.mit.edu;hgsc.bcm.edu 37 3 112998705 112998705 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOC 91653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 112969403 112969403 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOC 91653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 112998188 112998188 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOC 91653 broad.mit.edu;ucsc.edu 37 3 112969550 112969550 + Silent SNP G T T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BOC 91653 hgsc.bcm.edu 37 3 112998788 112998788 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BOC 91653 hgsc.bcm.edu 37 3 113002344 113002344 + Missense_Mutation SNP C C T rs147067616 unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BOC 91653 hgsc.bcm.edu 37 3 113005754 113005754 + 3'UTR SNP A A T rs5022662 bycluster;byfrequency;by1000genomes TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13601273 13601274 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13602085 13602085 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13604991 13604991 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13604992 13604992 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13605133 13605133 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13610222 13610222 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BOLA1 51027 broad.mit.edu 37 1 149871795 149871795 + Silent SNP G T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BPHL 670 hgsc.bcm.edu;ucsc.edu 37 6 3152714 3152714 + RNA SNP T T G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPI 671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36946865 36946865 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPI 671 hgsc.bcm.edu;ucsc.edu 37 20 36940337 36940337 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BPIL2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32853321 32853321 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPIL3 0 hgsc.bcm.edu;ucsc.edu 37 20 31627270 31627270 + Missense_Mutation SNP A A C novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPIL3 0 hgsc.bcm.edu;ucsc.edu 37 20 31629759 31629759 + Intron SNP T T A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPTF 2186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65909128 65909128 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPTF 2186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65955704 65955704 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPTF 2186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65955705 65955705 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPTF 2186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65960482 65960482 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BPTF 2186 hgsc.bcm.edu;ucsc.edu 37 17 65942187 65942187 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRAF 673 hgsc.bcm.edu 37 7 140550005 140550005 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA1 672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41197795 41197795 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BRCA1 672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41243622 41243622 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA1 672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41243623 41243623 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA1 672 broad.mit.edu;ucsc.edu 37 17 41234582 41234582 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx BRCA1 672 hgsc.bcm.edu 37 17 41246254 41246254 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRCA1 672 hgsc.bcm.edu 37 17 41267787 41267787 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32899270 32899270 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32900684 32900684 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32906553 32906553 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32910986 32910986 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32911477 32911477 + Silent SNP A A T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32915021 32915021 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32944606 32944606 + Missense_Mutation SNP C C G rs80359087 unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32945126 32945126 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32972539 32972539 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID BRCC3 79184 broad.mit.edu 37 X 154344345 154344345 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRD1 23774 broad.mit.edu;hgsc.bcm.edu 37 22 50187904 50187904 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD1 23774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50187702 50187702 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD1 23774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50191673 50191673 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD1 23774 hgsc.bcm.edu 37 22 50187881 50187881 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD2 6046 broad.mit.edu 37 6 32948548 32948548 + 3'UTR SNP A C C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRD2 6046 broad.mit.edu;hgsc.bcm.edu 37 6 32943251 32943251 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD2 6046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32942463 32942463 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD4 23476 hgsc.bcm.edu 37 19 15364972 15364972 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD4 23476 hgsc.bcm.edu 37 19 15376316 15376316 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD4 23476 hgsc.bcm.edu 37 19 15383793 15383796 + Frame_Shift_Del DEL CGTT CGTT - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 CGTT CGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD4 23476 hgsc.bcm.edu;ucsc.edu 37 19 15360094 15360095 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD4 23476 hgsc.bcm.edu;ucsc.edu 37 19 15366320 15366320 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD4 23476 hgsc.bcm.edu;ucsc.edu 37 19 15367030 15367030 + Silent SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD4 23476 hgsc.bcm.edu;ucsc.edu 37 19 15376312 15376314 + In_Frame_Del DEL GAC GAC - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 GAC GAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD7 29117 broad.mit.edu;hgsc.bcm.edu 37 16 50402667 50402667 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD7 29117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50357601 50357601 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD7 29117 hgsc.bcm.edu 37 16 50383993 50383994 + Frame_Shift_Ins INS - - AC novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD7 29117 hgsc.bcm.edu;ucsc.edu 37 16 50354652 50354652 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD7 29117 hgsc.bcm.edu;ucsc.edu 37 16 50373909 50373909 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD8 10902 broad.mit.edu 37 5 137503496 137503496 + Intron DEL A - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRD8 10902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137502346 137502346 + Silent SNP A A T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD8 10902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137503709 137503709 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD8 10902 hgsc.bcm.edu 37 5 137488285 137488285 + Silent SNP T T C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD8 10902 hgsc.bcm.edu;ucsc.edu 37 5 137498825 137498825 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRD9 65980 broad.mit.edu;hgsc.bcm.edu 37 5 891953 891953 + Silent SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRD9 65980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 864640 864640 + Silent SNP G G T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRDT 676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 92470105 92470105 + Silent SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRDT 676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 92470112 92470112 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRDT 676 hgsc.bcm.edu;ucsc.edu 37 1 92442700 92442700 + Missense_Mutation SNP T T C rs192529642 by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRDT 676 hgsc.bcm.edu;ucsc.edu 37 1 92445158 92445158 + Silent SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRE 9577 broad.mit.edu 37 2 28531155 28531155 + Intron SNP A C C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRE 9577 broad.mit.edu 37 2 28531155 28531155 + Intron SNP A C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRE 9577 broad.mit.edu 37 2 28531159 28531159 + Intron SNP A C C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRE 9577 broad.mit.edu 37 2 28531159 28531159 + Intron SNP A C C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRE 9577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 28467670 28467670 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRE 9577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 28532988 28532988 + Silent SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRE 9577 hgsc.bcm.edu 37 2 28117424 28117424 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRF1 2972 hgsc.bcm.edu 37 14 105695184 105695184 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRF1 2972 hgsc.bcm.edu;ucsc.edu 37 14 105684036 105684049 + Frame_Shift_Del DEL ATTGATCTTGCTGG ATTGATCTTGCTGG - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 ATTGATCTTGCTGG ATTGATCTTGCTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRF2 55290 hgsc.bcm.edu;ucsc.edu 37 8 37704604 37704605 + Frame_Shift_Ins INS - - AT novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRIP1 83990 broad.mit.edu;hgsc.bcm.edu 37 17 59820468 59820468 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRIP1 83990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 59853839 59853839 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRIP1 83990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 59886033 59886033 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRIX1 55299 broad.mit.edu 37 5 34915840 34915840 + 5'UTR SNP C T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRIX1 55299 hgsc.bcm.edu 37 5 34925328 34925328 + Splice_Region SNP T T A rs112241293 unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRMS1 25855 hgsc.bcm.edu 37 11 66105771 66105771 + Intron SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRMS1L 84312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 36304068 36304068 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRP44 0 broad.mit.edu;hgsc.bcm.edu 37 1 167887490 167887490 + RNA SNP A A T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRP44 0 broad.mit.edu;ucsc.edu 37 1 167893736 167893736 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRP44L 0 broad.mit.edu;ucsc.edu 37 6 166778943 166778943 + Intron DEL T - - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRP44L 0 hgsc.bcm.edu 37 6 166780320 166780320 + Silent SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRPF1 7862 broad.mit.edu;hgsc.bcm.edu 37 3 9785380 9785380 + Silent SNP C C G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRPF3 27154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36177586 36177586 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRPF3 27154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36177669 36177669 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRPF3 27154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36185716 36185716 + Silent SNP A A G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRPF3 27154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36198303 36198303 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRPF3 27154 hgsc.bcm.edu 37 6 36175215 36175215 + Silent SNP A A T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRS3 680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135570317 135570317 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRSK2 9024 hgsc.bcm.edu 37 11 1459547 1459547 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRWD1 54014 broad.mit.edu;hgsc.bcm.edu 37 21 40558945 40558945 + 3'UTR SNP A A G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 broad.mit.edu;hgsc.bcm.edu 37 21 40568620 40568620 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40559338 40559338 + Missense_Mutation SNP C C A rs140524582 unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40568354 40568354 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40590148 40590148 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40636400 40636400 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 broad.mit.edu;ucsc.edu 37 21 40568695 40568695 + Silent SNP T C C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRWD1 54014 broad.mit.edu;ucsc.edu 37 21 40572254 40572254 + Silent SNP A G G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRWD1 54014 hgsc.bcm.edu 37 21 40572142 40572142 + Intron SNP T T G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD1 54014 hgsc.bcm.edu 37 21 40649200 40649200 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRWD1 54014 hgsc.bcm.edu;ucsc.edu 37 21 40571019 40571019 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRWD3 254065 broad.mit.edu 37 X 80065199 80065200 + 5'UTR INS - GA GA rs10609885 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BRWD3 254065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 79948521 79948521 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD3 254065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 79991541 79991541 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD3 254065 hgsc.bcm.edu;ucsc.edu 37 X 79939596 79939596 + Silent SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BRWD3 254065 hgsc.bcm.edu;ucsc.edu 37 X 79941024 79941024 + Silent SNP C C T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BRWD3 254065 hgsc.bcm.edu;ucsc.edu 37 X 79962914 79962914 + Intron SNP C C A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSCL2 26580 broad.mit.edu 37 11 62473058 62473058 + 5'UTR SNP C G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BSCL2 26580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62472858 62472858 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSDC1 55108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32842063 32842063 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSDC1 55108 hgsc.bcm.edu;ucsc.edu 37 1 32842305 32842306 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSG 682 broad.mit.edu 37 19 582927 582927 + 3'UTR DEL T - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BSN 8927 broad.mit.edu 37 3 49705763 49705763 + 3'UTR DEL G - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BSN 8927 broad.mit.edu;hgsc.bcm.edu 37 3 49662433 49662433 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSN 8927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49662500 49662500 + Missense_Mutation SNP A A G rs140305957 byfrequency TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSN 8927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49690033 49690033 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSN 8927 hgsc.bcm.edu;ucsc.edu 37 3 49694177 49694177 + Silent SNP G G A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BSND 7809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55474113 55474113 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSND 7809 hgsc.bcm.edu;ucsc.edu 37 1 55464986 55464986 + Missense_Mutation SNP G G A rs34561376 bycluster;byfrequency;by1000genomes TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BSPRY 54836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116132237 116132237 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTAF1 9044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93695500 93695500 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTAF1 9044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93768666 93768666 + Silent SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTAF1 9044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93784657 93784657 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTAF1 9044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93784687 93784687 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTAF1 9044 hgsc.bcm.edu;ucsc.edu 37 10 93699745 93699745 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTBD10 84280 broad.mit.edu 37 11 13461498 13461498 + Intron DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTBD11 121551 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 107713793 107713793 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD11 121551 hgsc.bcm.edu;ucsc.edu 37 12 107713815 107713815 + Frame_Shift_Del DEL G G - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD12 0 hgsc.bcm.edu;ucsc.edu 37 16 3652234 3652234 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTBD17 388419 broad.mit.edu;hgsc.bcm.edu 37 17 72353257 72353257 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD18 643376 broad.mit.edu 37 11 57518777 57518777 + 5'UTR DEL G - - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTBD18 643376 hgsc.bcm.edu;ucsc.edu 37 11 57518583 57518583 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTBD19 149478 hgsc.bcm.edu;ucsc.edu 37 1 45276221 45276221 + Splice_Region SNP T T C novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTBD2 55643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1993133 1993133 + Silent SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD2 55643 hgsc.bcm.edu 37 19 1986502 1986502 + Silent SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTBD7 55727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93709191 93709191 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD7 55727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93754980 93754980 + 3'UTR SNP T T C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD7 55727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93761005 93761005 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD7 55727 hgsc.bcm.edu;ucsc.edu 37 14 93761134 93761134 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTBD8 284697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 92554272 92554272 + Missense_Mutation SNP T T G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTBD9 114781 broad.mit.edu;ucsc.edu 37 6 38160335 38160335 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTBD9 114781 hgsc.bcm.edu;ucsc.edu 37 6 38224273 38224273 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTF3L4 91408 broad.mit.edu;hgsc.bcm.edu 37 1 52552415 52552415 + Silent SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTF3L4 91408 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 52525496 52525496 + RNA SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTG1 694 broad.mit.edu;hgsc.bcm.edu 37 12 92539272 92539272 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTG1 694 hgsc.bcm.edu;ucsc.edu 37 12 92539248 92539249 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTG2 7832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203276485 203276485 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTG4 54766 broad.mit.edu 37 11 111384419 111384419 + 5'Flank DEL T - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTG4 54766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111368759 111368759 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTK 695 hgsc.bcm.edu 37 X 100611135 100611135 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTLA 151888 broad.mit.edu 37 3 112218320 112218320 + 5'UTR DEL A - - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTLA 151888 broad.mit.edu 37 3 112218320 112218320 + 5'UTR DEL A - - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTLA 151888 hgsc.bcm.edu;ucsc.edu 37 3 112185075 112185075 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTN1A1 696 hgsc.bcm.edu 37 6 26508251 26508251 + Intron SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTN1A1 696 hgsc.bcm.edu 37 6 26509395 26509395 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTN1A1 696 hgsc.bcm.edu;ucsc.edu 37 6 26501821 26501822 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTN1A1 696 hgsc.bcm.edu;ucsc.edu 37 6 26505216 26505216 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTN1A1 696 hgsc.bcm.edu;ucsc.edu 37 6 26509059 26509059 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTN2A1 11120 broad.mit.edu 37 6 26469143 26469143 + 3'UTR SNP G C C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTN2A2 10385 broad.mit.edu 37 6 26392525 26392525 + Intron SNP A G G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTN3A1 11119 broad.mit.edu 37 6 26413269 26413269 + Intron SNP T C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTN3A1 11119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26413447 26413447 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL2 56244 hgsc.bcm.edu 37 6 32370970 32370970 + Frame_Shift_Del DEL G G - rs139418003 bycluster;by1000genomes TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL2 56244 hgsc.bcm.edu 37 6 32370970 32370970 + Frame_Shift_Del DEL G G - rs139418003 bycluster;by1000genomes TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL3 10917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180420008 180420008 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BTNL3 10917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180424374 180424374 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BTNL3 10917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180432814 180432814 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BTNL3 10917 hgsc.bcm.edu;ucsc.edu 37 5 180429757 180429759 + In_Frame_Del DEL GAT GAT - novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 GAT GAT GAT - GAT GAT Unknown Valid Somatic Phase_I Capture PGM SOLID BTNL3 10917 hgsc.bcm.edu;ucsc.edu 37 5 180431709 180431709 + Intron SNP C C G novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq BTNL3 10917 hgsc.bcm.edu;ucsc.edu 37 5 180432688 180432688 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID BTNL8 79908 broad.mit.edu 37 5 180374669 180374669 + Intron SNP T C C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTNL8 79908 broad.mit.edu;hgsc.bcm.edu 37 5 180377117 180377117 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL8 79908 broad.mit.edu;hgsc.bcm.edu 37 5 180377360 180377360 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL8 79908 hgsc.bcm.edu 37 5 180375376 180375379 + Frame_Shift_Del DEL GTAA GTAA - rs10541574 unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 GTAA GTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL8 79908 hgsc.bcm.edu 37 5 180376249 180376249 + Missense_Mutation SNP C C T rs149566660 bycluster;byfrequency;by1000genomes TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL8 79908 hgsc.bcm.edu 37 5 180377470 180377470 + Missense_Mutation SNP G G A rs113820381 by1000genomes TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTNL9 153579 broad.mit.edu 37 5 180486891 180486892 + 3'UTR INS - G G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTNL9 153579 broad.mit.edu 37 5 180486891 180486892 + 3'UTR INS - G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BTNL9 153579 broad.mit.edu;hgsc.bcm.edu 37 5 180475150 180475150 + Silent SNP C C T rs112433732 bycluster TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL9 153579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180483000 180483000 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL9 153579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180483001 180483001 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BTNL9 153579 hgsc.bcm.edu 37 5 180481242 180481242 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTRC 8945 hgsc.bcm.edu 37 10 103294568 103294568 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BTRC 8945 hgsc.bcm.edu;ucsc.edu 37 10 103294568 103294568 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BUB1 699 broad.mit.edu 37 2 111395447 111395447 + 3'UTR SNP C T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BUB1B 701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40505655 40505655 + Silent SNP G G A rs146821149 unknown;alternate_allele TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BUB3 9184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124917322 124917322 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BVES 11149 hgsc.bcm.edu;ucsc.edu 37 6 105549032 105549032 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BYSL 705 broad.mit.edu 37 6 41889389 41889389 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BZRAP1 9256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56395795 56395795 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BZRAP1 9256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56395796 56395796 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BZRAP1 9256 hgsc.bcm.edu 37 17 56386194 56386194 + Missense_Mutation SNP C C T rs142495996 byfrequency TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BZRAP1 9256 hgsc.bcm.edu 37 17 56386383 56386384 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BZRAP1 9256 hgsc.bcm.edu 37 17 56386671 56386672 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BZW1 9689 broad.mit.edu 37 2 201684787 201684787 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx BZW1 9689 broad.mit.edu;hgsc.bcm.edu 37 2 201682967 201682967 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq BZW1 9689 hgsc.bcm.edu;ucsc.edu 37 2 201678003 201678003 + Silent SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID BZW2 28969 broad.mit.edu;ucsc.edu 37 7 16720980 16720980 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf107 219621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63520664 63520664 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf108 0 broad.mit.edu 37 10 697637 697637 + Intron DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf118 55088 broad.mit.edu;hgsc.bcm.edu 37 10 115885644 115885644 + Splice_Site SNP C C A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf118 55088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115889683 115889683 + Missense_Mutation SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf118 55088 hgsc.bcm.edu;ucsc.edu 37 10 115891000 115891000 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf118 55088 hgsc.bcm.edu;ucsc.edu 37 10 115891083 115891083 + Silent SNP A A G novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf118 55088 hgsc.bcm.edu;ucsc.edu 37 10 115894782 115894782 + Silent SNP T T A rs112902585 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf118 55088 hgsc.bcm.edu;ucsc.edu 37 10 115895715 115895715 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf118 55088 hgsc.bcm.edu;ucsc.edu 37 10 115917317 115917320 + Frame_Shift_Del DEL TTAA TTAA - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TTAA TTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf12 26148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98743198 98743198 + Missense_Mutation SNP T T G rs149307894 unknown;alternate_allele TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf12 26148 hgsc.bcm.edu;ucsc.edu 37 10 98741230 98741230 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf128 170371 broad.mit.edu 37 10 50374802 50374802 + Intron SNP C T T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf128 170371 hgsc.bcm.edu 37 10 50373777 50373777 + Intron SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf129 142827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96954310 96954310 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf129 142827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96967148 96967148 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf129 142827 hgsc.bcm.edu;ucsc.edu 37 10 96971678 96971678 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf137 26098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 127426983 127426983 + Silent SNP A A T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf137 26098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 127442319 127442319 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf140 0 broad.mit.edu 37 10 21805466 21805467 + In_Frame_Ins INS - CCTCCT CCTCCT rs112207161 bycluster;by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf140 0 hgsc.bcm.edu;ucsc.edu 37 10 21804074 21804074 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf140 0 hgsc.bcm.edu;ucsc.edu 37 10 21804074 21804074 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf18 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5789390 5789390 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf18 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5790452 5790452 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf18 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5800947 5800947 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf18 0 broad.mit.edu;ucsc.edu 37 10 5789077 5789077 + Silent SNP A C C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf2 56652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102749574 102749574 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf2 56652 hgsc.bcm.edu 37 10 102748452 102748452 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf26 0 broad.mit.edu 37 10 104503753 104503754 + 5'UTR INS - GGGAGG GGGAGG novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf26 0 broad.mit.edu 37 10 104575412 104575413 + 3'UTR INS - TT TT rs3216007 bycluster;by1000genomes TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf27 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 72541707 72541707 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf28 0 hgsc.bcm.edu;ucsc.edu 37 10 99968925 99968925 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf35 219738 broad.mit.edu;hgsc.bcm.edu 37 10 71392632 71392632 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf35 219738 hgsc.bcm.edu;ucsc.edu 37 10 71391583 71391583 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf4 0 broad.mit.edu 37 10 95459948 95459948 + Intron SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf4 0 broad.mit.edu 37 10 95459948 95459948 + Intron SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf4 0 broad.mit.edu 37 10 95459948 95459948 + Intron SNP A C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf4 0 broad.mit.edu 37 10 95459948 95459948 + Intron SNP A C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf4 0 broad.mit.edu 37 10 95459948 95459948 + Intron SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf4 0 broad.mit.edu 37 10 95459948 95459948 + Intron SNP A C C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf46 0 broad.mit.edu 37 10 120445456 120445457 + 3'UTR INS - T T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf47 0 broad.mit.edu;hgsc.bcm.edu 37 10 11894170 11894170 + Silent SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf50 0 broad.mit.edu 37 10 26880266 26880266 + RNA SNP G A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf53 282966 broad.mit.edu 37 10 50887761 50887761 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf53 282966 broad.mit.edu 37 10 50902024 50902024 + Intron SNP A G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf54 64115 hgsc.bcm.edu 37 10 73521776 73521776 + Silent SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf57 0 broad.mit.edu;ucsc.edu 37 10 81838462 81838462 + Missense_Mutation SNP A C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf62 414157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99350271 99350271 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf68 79741 broad.mit.edu 37 10 32863446 32863446 + Intron SNP A T T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf68 79741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 33134530 33134530 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf71 118461 broad.mit.edu 37 10 50530449 50530449 + 5'UTR DEL A - - rs111281265 unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf71 118461 broad.mit.edu 37 10 50530449 50530449 + 5'UTR DEL A - - rs111281265 unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf71 118461 broad.mit.edu 37 10 50534969 50534970 + In_Frame_Ins INS - ACACACACACAC ACACACACACAC novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf71 118461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50532616 50532616 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf72 0 hgsc.bcm.edu;ucsc.edu 37 10 50294072 50294072 + Splice_Region SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf76 79591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103750317 103750317 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf76 79591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103789421 103789421 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105922142 105922142 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105924006 105924007 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105942200 105942200 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105953637 105953637 + Missense_Mutation SNP C C T rs145913363 by1000genomes TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf79 0 hgsc.bcm.edu 37 10 105924008 105924008 + Silent SNP T T C rs146641264 byfrequency TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf79 0 hgsc.bcm.edu;ucsc.edu 37 10 105893489 105893489 + Silent SNP T T C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf81 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115534737 115534737 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf82 143379 broad.mit.edu 37 10 118424915 118424916 + Intron INS - A A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf82 143379 broad.mit.edu 37 10 118424916 118424916 + Intron DEL A - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C10orf82 143379 hgsc.bcm.edu;ucsc.edu 37 10 118424301 118424301 + Silent SNP G G A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf84 0 hgsc.bcm.edu;ucsc.edu 37 10 120085698 120085698 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf91 170393 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134261287 134261287 + Silent SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf93 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134743171 134743171 + Missense_Mutation SNP G G A rs149229934 byfrequency TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf93 0 hgsc.bcm.edu 37 10 134745212 134745212 + Intron SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf93 0 hgsc.bcm.edu;ucsc.edu 37 10 134746056 134746056 + Intron SNP T T C rs56388097 unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf93 0 hgsc.bcm.edu;ucsc.edu 37 10 134755189 134755189 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C10orf93(dist=140070) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134896159 134896159 + IGR SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C10orf99 387695 hgsc.bcm.edu 37 10 85944492 85944492 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf1 64776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111750266 111750266 + 5'UTR SNP T T A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf1 64776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111754535 111754535 + Silent SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf16 56673 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 8948498 8948498 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf17 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 8940960 8940960 + Nonsense_Mutation SNP T T G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf21 29125 hgsc.bcm.edu 37 11 2323037 2323037 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf24 53838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68029634 68029634 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf24 53838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68029933 68029933 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf24 53838 broad.mit.edu;ucsc.edu 37 11 68031203 68031203 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64875906 64875906 + Silent SNP C C A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf30 56946 broad.mit.edu 37 11 76169535 76169536 + Intron INS - T T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf30 56946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76256949 76256949 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf30 56946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76261122 76261122 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf34 349633 broad.mit.edu 37 11 112131327 112131327 + 5'UTR SNP T C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf41 0 broad.mit.edu;hgsc.bcm.edu 37 11 33566496 33566496 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33565157 33565157 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33565649 33565649 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33566837 33566837 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf41 0 broad.mit.edu;ucsc.edu 37 11 33628343 33628343 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf41 0 hgsc.bcm.edu;ucsc.edu 37 11 33565134 33565134 + Silent SNP C C T rs78046896 bycluster;by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf41 0 hgsc.bcm.edu;ucsc.edu 37 11 33566672 33566672 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf42 160298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6231300 6231300 + Missense_Mutation SNP G G A rs148934108 unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf42 160298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6231320 6231320 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf42 160298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6231744 6231744 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf44 283171 hgsc.bcm.edu 37 11 130543033 130543033 + 5'UTR SNP G G A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf45 219833 broad.mit.edu;ucsc.edu 37 11 128772493 128772493 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf46 0 broad.mit.edu 37 11 30358438 30358438 + 3'UTR SNP A C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf46 0 broad.mit.edu;hgsc.bcm.edu 37 11 30358133 30358133 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30352900 30352900 + Silent SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf46 0 hgsc.bcm.edu 37 11 30352754 30352754 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf46 0 hgsc.bcm.edu 37 11 30352756 30352756 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf49 79096 hgsc.bcm.edu 37 11 47185748 47185748 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf49 79096 hgsc.bcm.edu;ucsc.edu 37 11 47182704 47182704 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf51 0 broad.mit.edu 37 11 71817517 71817517 + 3'UTR DEL C - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf51 0 broad.mit.edu 37 11 71817517 71817517 + 3'UTR DEL C - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf54 28970 broad.mit.edu 37 11 93494976 93494976 + 3'UTR SNP C A A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf54 28970 hgsc.bcm.edu;ucsc.edu 37 11 93483575 93483575 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf57 55216 broad.mit.edu 37 11 111951425 111951425 + Intron SNP T G G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf57 55216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111946306 111946306 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf59 0 broad.mit.edu 37 11 71809264 71809264 + Intron SNP G T T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf63 79864 broad.mit.edu 37 11 122776167 122776167 + Intron DEL T - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf63 79864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 122817268 122817268 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf64 0 hgsc.bcm.edu;ucsc.edu 37 11 60395847 60395847 + 5'UTR SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf71 54494 broad.mit.edu 37 11 114270517 114270518 + 3'UTR INS - ACG ACG novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf71 54494 broad.mit.edu 37 11 114270517 114270518 + 3'UTR INS - ACG ACG novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf73 51501 broad.mit.edu;hgsc.bcm.edu 37 11 86048459 86048459 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf74 119710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 36680650 36680650 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf84 144097 broad.mit.edu 37 11 63586459 63586459 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf84 144097 broad.mit.edu 37 11 63594357 63594357 + Intron SNP G C C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C11orf85 283129 hgsc.bcm.edu 37 11 64717341 64717341 + Splice_Site SNP C C T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C11orf87 399947 hgsc.bcm.edu 37 11 109294760 109294761 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf93 120376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111179126 111179126 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf94 143678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45928173 45928173 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61539075 61539075 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61545943 61545943 + Silent SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C11orf9 0 broad.mit.edu;ucsc.edu 37 11 61543864 61543864 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53693593 53693593 + Silent SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53700059 53700059 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53700821 53700821 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53700822 53700822 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27059272 27059272 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27066946 27066946 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27075598 27075598 + Silent SNP A A G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27081163 27081163 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf12 0 hgsc.bcm.edu 37 12 91347561 91347581 + In_Frame_Del DEL TCTTCCTCCTCATCTTCGACC TCTTCCTCCTCATCTTCGACC - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 TCTTCCTCCTCATCTTCGACC TCTTCCTCCTCATCTTCGACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf26 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 82796821 82796821 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf34 0 broad.mit.edu 37 12 110181933 110181933 + 5'UTR DEL G - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf34 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110205829 110205829 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf35 0 broad.mit.edu;hgsc.bcm.edu 37 12 32140106 32140106 + Intron SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32134198 32134198 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32134405 32134405 + Silent SNP T T C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32137779 32137779 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf35 0 broad.mit.edu;ucsc.edu 37 12 32138193 32138193 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf39 80763 broad.mit.edu;ucsc.edu 37 12 21679901 21679901 + Splice_Site SNP G T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf40 283461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40041619 40041619 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf40 283461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40076779 40076779 + Silent SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf40 283461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40114940 40114940 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf40 283461 hgsc.bcm.edu 37 12 40040694 40040694 + Splice_Region SNP A A G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49047945 49047945 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf41 0 broad.mit.edu;ucsc.edu 37 12 49073492 49073492 + Nonsense_Mutation SNP C A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf41 0 hgsc.bcm.edu;ucsc.edu 37 12 49063049 49063049 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf43 64897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121442228 121442228 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf43 64897 hgsc.bcm.edu;ucsc.edu 37 12 121444125 121444125 + Silent SNP A A G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf44 60673 broad.mit.edu 37 12 52470991 52470991 + 3'UTR SNP G C C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf44 60673 hgsc.bcm.edu 37 12 52467675 52467697 + Frame_Shift_Del DEL GGGGAGTTCAAGGTAAGGGTGTC GGGGAGTTCAAGGTAAGGGTGTC - rs143921343 by1000genomes TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 GGGGAGTTCAAGGTAAGGGTGTC GGGGAGTTCAAGGTAAGGGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf44 60673 hgsc.bcm.edu;ucsc.edu 37 12 52467675 52467697 + Frame_Shift_Del DEL GGGGAGTTCAAGGTAAGGGTGTC GGGGAGTTCAAGGTAAGGGTGTC - rs143921343 by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 GGGGAGTTCAAGGTAAGGGTGTC GGGGAGTTCAAGGTAAGGGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf45 121053 hgsc.bcm.edu 37 12 105380152 105380152 + Missense_Mutation SNP A A C rs1129593 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf45 121053 hgsc.bcm.edu 37 12 105380152 105380152 + Missense_Mutation SNP A A C rs1129593 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf47 0 hgsc.bcm.edu 37 12 112280586 112280586 + RNA SNP T T G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf48 0 hgsc.bcm.edu 37 12 102559621 102559621 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf50 160419 hgsc.bcm.edu 37 12 88388466 88388466 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf51 0 broad.mit.edu 37 12 112605691 112605691 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf51 0 broad.mit.edu;hgsc.bcm.edu 37 12 112650409 112650409 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf51 0 broad.mit.edu;hgsc.bcm.edu 37 12 112673071 112673071 + Splice_Site SNP C C A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf51 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112688106 112688106 + Silent SNP G G C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf51 0 hgsc.bcm.edu 37 12 112616787 112616787 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf51 0 hgsc.bcm.edu;ucsc.edu 37 12 112650435 112650435 + Silent SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf53 0 broad.mit.edu 37 12 6804739 6804739 + Silent SNP C T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf53 0 broad.mit.edu 37 12 6806817 6806817 + Silent SNP C T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf54 121273 hgsc.bcm.edu;ucsc.edu 37 12 48884560 48884560 + Intron SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf56 115749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64671569 64671569 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf57 113246 broad.mit.edu 37 12 7054995 7054995 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf57 113246 broad.mit.edu;hgsc.bcm.edu 37 12 7053852 7053852 + Intron SNP A A C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf60 144608 broad.mit.edu;ucsc.edu 37 12 14976216 14976216 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf60 144608 hgsc.bcm.edu 37 12 14976418 14976419 + Frame_Shift_Del DEL TA TA - rs139293175 bycluster;by1000genomes TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf63 374467 hgsc.bcm.edu 37 12 97102553 97102553 + Silent SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf63 374467 hgsc.bcm.edu;ucsc.edu 37 12 97137566 97137566 + Silent SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf64 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80650146 80650146 + Silent SNP A A C novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf64 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80752068 80752068 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C12orf64 0 hgsc.bcm.edu;ucsc.edu 37 12 80750654 80750654 + Silent SNP A A G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C12orf65 91574 broad.mit.edu 37 12 123741655 123741655 + 3'UTR SNP G C C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf70 341346 broad.mit.edu;ucsc.edu 37 12 27628533 27628533 + Silent SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C12orf74 338809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93100735 93100735 + Missense_Mutation SNP T T G rs183080897 by1000genomes;alternate_allele TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42042974 42042974 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf1 0 broad.mit.edu;hgsc.bcm.edu 37 13 50489191 50489191 + RNA SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 50495711 50495711 + Silent SNP A A G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf1 0 hgsc.bcm.edu 37 13 50505170 50505170 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C13orf18 0 broad.mit.edu;hgsc.bcm.edu 37 13 46935677 46935677 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf18 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 46919734 46919734 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf18 0 broad.mit.edu;ucsc.edu 37 13 46919715 46919715 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C13orf18 0 hgsc.bcm.edu;ucsc.edu 37 13 46918949 46918949 + Silent SNP G G A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C13orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39587314 39587314 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf23 0 hgsc.bcm.edu;ucsc.edu 37 13 39587067 39587067 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf26 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 31526903 31526903 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf27 0 broad.mit.edu 37 13 103418479 103418479 + 3'UTR DEL A - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C13orf27 0 broad.mit.edu 37 13 103418482 103418483 + 3'UTR INS - A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C13orf27 0 hgsc.bcm.edu 37 13 103418816 103418816 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C13orf30 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 43362794 43362794 + Silent SNP A A C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf30 0 hgsc.bcm.edu 37 13 43358245 43358245 + Silent SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C13orf31 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 44458052 44458052 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf31 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 44462991 44462991 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf34 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 73309117 73309117 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf37 0 broad.mit.edu 37 13 73284303 73284303 + 3'UTR SNP C A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C13orf38-SOHLH2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 36776196 36776196 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf39 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103343225 103343226 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C13orf39 0 hgsc.bcm.edu 37 13 103346806 103346806 + Missense_Mutation SNP C C G rs2390760 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf101 54916 broad.mit.edu 37 14 57082524 57082524 + Intron DEL A - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf101 54916 broad.mit.edu 37 14 57116193 57116193 + 3'UTR DEL A - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf101 54916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 57070637 57070637 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf101 54916 hgsc.bcm.edu 37 14 57113992 57113992 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf102 0 hgsc.bcm.edu;ucsc.edu 37 14 90754790 90754793 + Frame_Shift_Del DEL CACT CACT - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 CACT CACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf104 0 broad.mit.edu;hgsc.bcm.edu 37 14 50100543 50100543 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf106 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45673409 45673409 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf106 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45687640 45687640 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf106 0 hgsc.bcm.edu 37 14 45693722 45693722 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf106 0 hgsc.bcm.edu 37 14 45716018 45716019 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf109 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93652729 93652729 + Silent SNP C C T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf1 11161 broad.mit.edu;hgsc.bcm.edu 37 14 76117875 76117875 + 3'UTR SNP T T G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf1 11161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 76118207 76118207 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf115 0 hgsc.bcm.edu 37 14 74825562 74825562 + Silent SNP C C G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf126 0 broad.mit.edu;hgsc.bcm.edu 37 14 31917639 31917639 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf135 0 broad.mit.edu 37 14 60591443 60591443 + Frame_Shift_Del DEL T - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf135 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 60587988 60587988 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf135 0 broad.mit.edu;ucsc.edu 37 14 60600702 60600703 + Frame_Shift_Del DEL GA - - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf135 0 hgsc.bcm.edu 37 14 60592395 60592396 + In_Frame_Ins INS - - TAT novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf138 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50579393 50579393 + Silent SNP T T C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf145 0 broad.mit.edu 37 14 81297385 81297385 + Intron SNP G A A rs7156572 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf145 0 broad.mit.edu;ucsc.edu 37 14 81259370 81259370 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf148 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77880341 77880341 + Silent SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf149 0 broad.mit.edu;hgsc.bcm.edu 37 14 59951040 59951040 + 5'UTR SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf149 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59942835 59942835 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf149 0 hgsc.bcm.edu;ucsc.edu 37 14 59939728 59939729 + Frame_Shift_Ins INS - - ATAAA novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf153 0 hgsc.bcm.edu 37 14 104053676 104053676 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf159 80017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 91636352 91636352 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf166B 145497 broad.mit.edu 37 14 77292838 77292838 + 5'UTR SNP C G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf166B 145497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77327095 77327095 + Silent SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf169 79697 broad.mit.edu 37 14 73959721 73959721 + 3'UTR SNP C T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf169 79697 hgsc.bcm.edu 37 14 73957981 73957982 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf169 79697 hgsc.bcm.edu 37 14 73957981 73957982 + Frame_Shift_Ins INS - - C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf174 0 broad.mit.edu 37 14 77844367 77844367 + Silent SNP A G G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf174 0 hgsc.bcm.edu 37 14 77844691 77844691 + Silent SNP A A G novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf174 0 hgsc.bcm.edu 37 14 77844692 77844692 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf177 283598 hgsc.bcm.edu 37 14 99182527 99182535 + Frame_Shift_Del DEL GGATGCATC GGATGCATC - rs139827156 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 GGATGCATC GGATGCATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf177 283598 hgsc.bcm.edu 37 14 99182527 99182535 + Frame_Shift_Del DEL GGATGCATC GGATGCATC - rs139827156 bycluster;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 GGATGCATC GGATGCATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf180 400258 broad.mit.edu 37 14 105054842 105054843 + Intron INS - G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf181 0 broad.mit.edu 37 14 69262441 69262441 + 3'UTR SNP A G G rs3742887 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf19 0 broad.mit.edu 37 14 35409214 35409214 + RNA SNP T C C rs1967723 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf19 0 broad.mit.edu 37 14 35409694 35409694 + RNA DEL A - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf25 0 hgsc.bcm.edu 37 14 38293080 38293080 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf2 9556 broad.mit.edu 37 14 104387524 104387524 + Intron SNP T C C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf2 9556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 104381489 104381489 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf37 145407 broad.mit.edu 37 14 58471373 58471373 + 3'UTR SNP T G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf37 145407 broad.mit.edu 37 14 58471373 58471373 + 3'UTR SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf37 145407 broad.mit.edu 37 14 58471373 58471373 + 3'UTR SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf37 145407 broad.mit.edu 37 14 58471390 58471390 + 3'UTR SNP C T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf37 145407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58563699 58563699 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf37 145407 hgsc.bcm.edu;ucsc.edu 37 14 58471778 58471778 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf39 317761 broad.mit.edu 37 14 60938407 60938407 + Missense_Mutation SNP T A A rs1956551 bycluster;alternate_allele TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf39 317761 broad.mit.edu;hgsc.bcm.edu 37 14 60932762 60932762 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf39 317761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 60928115 60928115 + Silent SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf39 317761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 60928116 60928116 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf43 0 broad.mit.edu 37 14 74205845 74205845 + Silent SNP G A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf43 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74205375 74205375 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf45 0 broad.mit.edu;hgsc.bcm.edu 37 14 74489763 74489763 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf45 0 hgsc.bcm.edu 37 14 74495962 74495962 + Intron SNP C C A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf4 0 broad.mit.edu 37 14 77491664 77491664 + 3'UTR SNP A G G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77491962 77491962 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77492045 77492045 + Silent SNP C C G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf49 0 hgsc.bcm.edu;ucsc.edu 37 14 95932291 95932291 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf64 388011 broad.mit.edu 37 14 98425566 98425566 + Intron DEL G - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C14orf79 122616 broad.mit.edu;hgsc.bcm.edu 37 14 105461138 105461138 + 3'UTR SNP T T A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf79 122616 hgsc.bcm.edu;ucsc.edu 37 14 105452999 105452999 + Silent SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C14orf93 60686 broad.mit.edu;hgsc.bcm.edu 37 14 23468257 23468257 + 5'UTR SNP G G A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf93 60686 broad.mit.edu;hgsc.bcm.edu 37 14 23468258 23468258 + 5'UTR SNP C C T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C14orf93 60686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23458974 23458974 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf21 0 broad.mit.edu 37 15 45848224 45848224 + RNA SNP G T T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf21 0 broad.mit.edu 37 15 45848224 45848224 + RNA SNP G T T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf21 0 broad.mit.edu 37 15 45848231 45848231 + RNA DEL T - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf2 0 hgsc.bcm.edu 37 15 24922520 24922520 + Silent SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C15orf26 161502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81440807 81440807 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf27 123591 hgsc.bcm.edu;ucsc.edu 37 15 76449034 76449034 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C15orf29 0 broad.mit.edu 37 15 34438864 34438864 + Intron SNP T C C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf33 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49868999 49868999 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf37 283687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 80215117 80215117 + RNA SNP T T C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf40 123207 broad.mit.edu 37 15 83673932 83673933 + Intron INS - AT AT novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf40 123207 hgsc.bcm.edu 37 15 83677270 83677270 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf40 123207 hgsc.bcm.edu 37 15 83677270 83677271 + Frame_Shift_Ins INS - - A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf40 123207 hgsc.bcm.edu 37 15 83677271 83677271 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf41 84529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 36984363 36984363 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf42 0 hgsc.bcm.edu;ucsc.edu 37 15 90128974 90128974 + Silent SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf42 0 hgsc.bcm.edu;ucsc.edu 37 15 90168863 90168864 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf51 0 broad.mit.edu 37 15 100340123 100340125 + RNA DEL AGA - - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf51 0 hgsc.bcm.edu 37 15 100340142 100340142 + RNA SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf52 388115 broad.mit.edu 37 15 40627240 40627240 + 3'UTR SNP A G G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf52 388115 broad.mit.edu 37 15 40631251 40631251 + Intron SNP A G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf52 388115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40628801 40628801 + Silent SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf55 256646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34640772 34640772 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf55 256646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34647722 34647722 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf57 90416 broad.mit.edu 37 15 40824381 40824381 + 3'UTR SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf57 90416 broad.mit.edu 37 15 40824402 40824402 + 3'UTR SNP G C C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf57 90416 broad.mit.edu 37 15 40849194 40849195 + Intron INS - AA AA rs10647114 bycluster;by1000genomes TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C15orf58 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90785079 90785079 + Silent SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf60 283677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73843391 73843391 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C15orf60 283677 hgsc.bcm.edu 37 15 73852255 73852255 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf3 750 broad.mit.edu 37 16 90096053 90096055 + 5'UTR DEL CTT - - rs79220619 bycluster;by1000genomes TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf3 750 hgsc.bcm.edu 37 16 90095582 90095582 + Missense_Mutation SNP T T C rs62640380 byfrequency TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf3 750 hgsc.bcm.edu 37 16 90095596 90095596 + Missense_Mutation SNP A A G rs55742939 unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf3 750 hgsc.bcm.edu 37 16 90095596 90095596 + Missense_Mutation SNP A A G rs55742939 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf3 750 hgsc.bcm.edu 37 16 90095597 90095597 + Missense_Mutation SNP T T C rs61118444 byfrequency TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf3 750 hgsc.bcm.edu 37 16 90095597 90095597 + Missense_Mutation SNP T T C rs61118444 byfrequency TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf3 750 hgsc.bcm.edu;ucsc.edu 37 16 90095480 90095480 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf46 123775 broad.mit.edu 37 16 81094613 81094614 + 3'UTR INS - A A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf46 123775 broad.mit.edu 37 16 81094614 81094614 + 3'UTR DEL A - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf46 123775 broad.mit.edu 37 16 81094757 81094757 + 3'UTR SNP C G G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf46 123775 hgsc.bcm.edu 37 16 81095065 81095065 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf48 0 broad.mit.edu;hgsc.bcm.edu 37 16 67697841 67697841 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf52 730094 hgsc.bcm.edu 37 16 22019647 22019647 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf5 0 broad.mit.edu 37 16 4562433 4562433 + 3'UTR SNP G C C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf53 0 broad.mit.edu 37 16 29831005 29831005 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf54 283897 broad.mit.edu 37 16 29755469 29755469 + 3'UTR DEL A - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf55 124045 broad.mit.edu 37 16 89736114 89736114 + 3'UTR DEL C - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf55 124045 broad.mit.edu 37 16 89736114 89736114 + 3'UTR DEL C - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf55 124045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89724745 89724745 + Missense_Mutation SNP G G C rs149646248 unknown;alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf55 124045 hgsc.bcm.edu 37 16 89735835 89735835 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf55 124045 hgsc.bcm.edu 37 16 89735835 89735835 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf62 57020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19576270 19576270 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf62 57020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19613023 19613023 + Silent SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf62 57020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19627466 19627466 + Missense_Mutation SNP G G C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf62 57020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19641134 19641134 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf62 57020 hgsc.bcm.edu 37 16 19603104 19603104 + Splice_Region SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf63 0 broad.mit.edu 37 16 15961098 15961098 + 3'UTR DEL T - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf63 0 hgsc.bcm.edu;ucsc.edu 37 16 15977977 15977977 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf70 80262 broad.mit.edu 37 16 67166548 67166548 + Intron SNP G A A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf70 80262 broad.mit.edu;ucsc.edu 37 16 67166430 67166430 + Splice_Site SNP T G G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf70 80262 hgsc.bcm.edu 37 16 67179492 67179492 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf71 146562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4787820 4787820 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf71 146562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4794979 4794979 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf73 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1884331 1884331 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf75 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11444604 11444604 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf78 123970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49407979 49407979 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C16orf78 123970 hgsc.bcm.edu 37 16 49412406 49412406 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C16orf87 388272 broad.mit.edu 37 16 46836599 46836599 + 3'UTR DEL T - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf87 388272 broad.mit.edu 37 16 46836599 46836599 + 3'UTR DEL T - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf87 388272 broad.mit.edu 37 16 46836753 46836753 + 3'UTR SNP C A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf88 400506 broad.mit.edu;ucsc.edu 37 16 19718398 19718398 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf89 146556 broad.mit.edu 37 16 5115948 5115948 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C16orf93 90835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30768957 30768957 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf101 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80369360 80369360 + Silent SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf103 256302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 21146678 21146678 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf103 256302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 21147503 21147503 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf104 284071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42745374 42745374 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf107 100130311 broad.mit.edu 37 17 4805072 4805072 + 3'UTR DEL C - - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf107 100130311 broad.mit.edu 37 17 4805700 4805700 + 3'UTR SNP G T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43332848 43332848 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf46 0 hgsc.bcm.edu;ucsc.edu 37 17 43333216 43333216 + Silent SNP G G T rs148278717 unknown;alternate_allele TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf47 284083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56620394 56620394 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf47 284083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56620725 56620725 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf47 284083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56620818 56620818 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf49 124944 broad.mit.edu 37 17 6920727 6920727 + 3'UTR SNP A C C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf49 124944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6919830 6919830 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf53 78995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42225574 42225574 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf53 78995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42232723 42232723 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf53 78995 hgsc.bcm.edu 37 17 42225907 42225907 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf56 0 broad.mit.edu 37 17 79204128 79204134 + Intron DEL TGAGTGC - - rs72268262 bycluster;by1000genomes TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 TGAGTGC TGAGTGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf56 0 broad.mit.edu 37 17 79204128 79204134 + Intron DEL TGAGTGC - - rs72268262 bycluster;by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 TGAGTGC TGAGTGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf56 0 broad.mit.edu 37 17 79204474 79204474 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf57 0 broad.mit.edu 37 17 45503313 45503313 + Intron SNP A C C novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf57 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 45452174 45452174 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf57 0 hgsc.bcm.edu 37 17 45438887 45438890 + Frame_Shift_Del DEL AGTG AGTG - rs10538163 bycluster;by1000genomes TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 AGTG AGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf58 284018 broad.mit.edu;hgsc.bcm.edu 37 17 65987984 65987984 + 3'UTR SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf63 0 broad.mit.edu 37 17 27083466 27083466 + 3'UTR DEL A - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf63 0 broad.mit.edu 37 17 27085150 27085150 + 3'UTR DEL C - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf63 0 hgsc.bcm.edu;ucsc.edu 37 17 27086257 27086258 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf65 0 broad.mit.edu 37 17 42255127 42255127 + 5'UTR SNP C G G novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf65 0 broad.mit.edu 37 17 42255170 42255170 + 5'UTR SNP G A A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34182253 34182253 + Silent SNP T T C novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34182344 34182344 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34185482 34185482 + Silent SNP G G T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34190111 34190111 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34190556 34190556 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf68 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8141397 8141397 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf68 0 hgsc.bcm.edu 37 17 8139457 8139458 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf68 0 hgsc.bcm.edu;ucsc.edu 37 17 8141944 8141944 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf71 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57292295 57292295 + Missense_Mutation SNP C C G rs141411025 bycluster;by1000genomes TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf71 0 hgsc.bcm.edu;ucsc.edu 37 17 57292183 57292194 + In_Frame_Del DEL ACCATGTCCGGT ACCATGTCCGGT - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 ACCATGTCCGGT ACCATGTCCGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf71 0 hgsc.bcm.edu;ucsc.edu 37 17 57292221 57292225 + Frame_Shift_Del DEL CCCTT CCCTT - novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CCCTT CCCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf74 201243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7330515 7330515 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf74 201243 hgsc.bcm.edu 37 17 7330114 7330114 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf75 64149 broad.mit.edu 37 17 30658518 30658518 + 3'UTR DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf75 64149 broad.mit.edu 37 17 30658580 30658580 + 3'UTR DEL C - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf75 64149 broad.mit.edu 37 17 30658583 30658584 + 3'UTR INS - T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf75 64149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30660439 30660439 + Silent SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf75 64149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30660470 30660470 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf75 64149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30665271 30665271 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf75 64149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30666861 30666861 + Silent SNP C C A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf75 64149 broad.mit.edu;ucsc.edu 37 17 30669149 30669149 + Missense_Mutation SNP A G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf75 64149 hgsc.bcm.edu;ucsc.edu 37 17 30658932 30658932 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf80 55028 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71232490 71232490 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf80 55028 hgsc.bcm.edu 37 17 71241322 71241325 + Frame_Shift_Del DEL GTAA GTAA - novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 GTAA GTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf80 55028 hgsc.bcm.edu 37 17 71241322 71241325 + Frame_Shift_Del DEL GTAA GTAA - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 GTAA GTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf81 0 hgsc.bcm.edu 37 17 7160242 7160242 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf82 388407 broad.mit.edu 37 17 59489871 59489877 + Frame_Shift_Del DEL GGCCTCG - - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GGCCTCG GGCCTCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf82 388407 hgsc.bcm.edu 37 17 59489427 59489427 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C17orf85 55421 broad.mit.edu 37 17 3714929 3714929 + 3'UTR DEL C - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf91 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1617206 1617206 + RNA SNP C C A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf97 400566 broad.mit.edu 37 17 263315 263315 + Silent SNP C T T rs71356792 bycluster TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf97 400566 broad.mit.edu 37 17 263666 263666 + Silent SNP C A A rs111388956 unknown;alternate_allele TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf97 400566 hgsc.bcm.edu 37 17 263294 263294 + Missense_Mutation SNP C C G rs35229416 bycluster;byfrequency;by1000genomes TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf97 400566 hgsc.bcm.edu 37 17 263652 263652 + Missense_Mutation SNP G G A rs111543298 unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf98 388381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36997521 36997521 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C17orf99 100141515 broad.mit.edu 37 17 76162140 76162140 + 3'UTR SNP A G G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C17orf99 100141515 broad.mit.edu;hgsc.bcm.edu 37 17 76157222 76157222 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C18orf10 0 broad.mit.edu 37 18 34378398 34378398 + Intron SNP T G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C18orf10 0 hgsc.bcm.edu 37 18 34376768 34376768 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C18orf1 0 broad.mit.edu 37 18 13612545 13612545 + Intron DEL C - - rs11311417 unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C18orf1 0 broad.mit.edu 37 18 13612656 13612657 + Intron INS - G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C18orf1 0 broad.mit.edu 37 18 13648631 13648631 + 3'UTR DEL T - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C18orf19 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 13681730 13681730 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C18orf19 0 hgsc.bcm.edu 37 18 13681611 13681611 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C18orf20 0 hgsc.bcm.edu 37 18 61747635 61747635 + 3'UTR SNP T T A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C18orf21 83608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33557546 33557546 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C18orf21 83608 hgsc.bcm.edu;ucsc.edu 37 18 33557476 33557476 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C18orf22 0 broad.mit.edu 37 18 77806266 77806266 + 3'UTR SNP C A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C18orf34 0 broad.mit.edu 37 18 30517850 30517850 + 3'UTR SNP G T T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C18orf34 0 broad.mit.edu;hgsc.bcm.edu 37 18 30795588 30795588 + Silent SNP T T A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C18orf34(dist=119950) 0 hgsc.bcm.edu;ucsc.edu 37 18 31140635 31140635 + IGR SNP C C T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C18orf45 0 hgsc.bcm.edu;ucsc.edu 37 18 20951381 20951381 + Splice_Region SNP C C G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C18orf55 0 hgsc.bcm.edu 37 18 71825486 71825486 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C18orf8 29919 broad.mit.edu;hgsc.bcm.edu 37 18 21109584 21109584 + Intron SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C18orf8 29919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21084363 21084363 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf12 83636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 30193856 30193856 + Silent SNP G G T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf21 126353 broad.mit.edu 37 19 757468 757468 + Silent SNP C A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf21 126353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 757806 757806 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf26 255057 broad.mit.edu;hgsc.bcm.edu 37 19 1234610 1234610 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf26 255057 hgsc.bcm.edu 37 19 1236046 1236051 + In_Frame_Del DEL AGTGGT AGTGGT - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 AGTGGT AGTGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf2 0 hgsc.bcm.edu 37 19 30500143 30500143 + Silent SNP T T C rs1127493 bycluster;byfrequency TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf2 0 hgsc.bcm.edu 37 19 30500143 30500143 + Silent SNP T T C rs1127493 bycluster;byfrequency TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf2 0 hgsc.bcm.edu;ucsc.edu 37 19 30496554 30496554 + Intron SNP C C G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf33 64073 hgsc.bcm.edu 37 19 38795587 38795587 + Missense_Mutation SNP A A G rs76762399 bycluster;byfrequency TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf33 64073 hgsc.bcm.edu 37 19 38795587 38795587 + Missense_Mutation SNP A A G rs76762399 bycluster;byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf34 0 broad.mit.edu 37 19 1954075 1954075 + 5'UTR SNP G A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf34 0 broad.mit.edu 37 19 1954126 1954127 + 5'UTR INS - A A rs34622118 bycluster;by1000genomes TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf36 0 broad.mit.edu 37 19 2098586 2098586 + Intron SNP G C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf38 255809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10979899 10979899 + Silent SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf39 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11486488 11486489 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf39 0 hgsc.bcm.edu;ucsc.edu 37 19 11486464 11486464 + Missense_Mutation SNP C C G rs11542550 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf44 84167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16620643 16620643 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf45 374877 broad.mit.edu 37 19 7571121 7571135 + Intron DEL CCCCATGGAGCCCCT - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 CCCCATGGAGCCCCT CCCCATGGAGCCCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf45 374877 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7573131 7573131 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf46 0 broad.mit.edu 37 19 36499618 36499618 + 5'UTR SNP G C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf46 0 broad.mit.edu 37 19 36499618 36499618 + 5'UTR SNP G C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf46 0 broad.mit.edu;ucsc.edu 37 19 36494533 36494533 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf47 126526 broad.mit.edu;hgsc.bcm.edu 37 19 40827909 40827909 + Silent SNP G G T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf47 126526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40829950 40829950 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf47 126526 hgsc.bcm.edu;ucsc.edu 37 19 40826395 40826395 + downstream SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf48 84798 broad.mit.edu 37 19 51305662 51305662 + Intron SNP C T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf51 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55670934 55670934 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf53 28974 hgsc.bcm.edu 37 19 13885310 13885310 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C19orf54 284325 hgsc.bcm.edu 37 19 41250530 41250530 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C19orf55 148137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36258775 36258775 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf55 148137 hgsc.bcm.edu 37 19 36258938 36258938 + Frame_Shift_Del DEL G G - rs139446374 bycluster;by1000genomes TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf57 79173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14000172 14000172 + Silent SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf61 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44237823 44237823 + Silent SNP G G A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf62 0 broad.mit.edu 37 19 17387524 17387524 + Intron SNP T G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf62 0 broad.mit.edu 37 19 17387524 17387524 + Intron SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf62 0 broad.mit.edu 37 19 17387524 17387524 + Intron SNP T G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf62 0 broad.mit.edu 37 19 17387524 17387524 + Intron SNP T G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf62 0 broad.mit.edu 37 19 17387524 17387524 + Intron SNP T G G novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf62 0 broad.mit.edu 37 19 17387524 17387524 + Intron SNP T G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf62 0 broad.mit.edu 37 19 17387980 17387983 + Intron DEL CTTG - - rs71334697 bycluster;by1000genomes TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 CTTG CTTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf63 0 hgsc.bcm.edu 37 19 50985427 50985427 + Missense_Mutation SNP G G A rs147229320 unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C19orf69 100170765 broad.mit.edu 37 19 41950319 41950320 + 3'UTR INS - T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C19orf75 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51767348 51767348 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C19orf76 0 hgsc.bcm.edu 37 19 50193437 50193437 + Missense_Mutation SNP C C A rs45613034 bycluster;byfrequency;by1000genomes TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf101 257044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 244715945 244715945 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf101 257044 hgsc.bcm.edu 37 1 244643099 244643099 + Intron SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf101 257044 hgsc.bcm.edu;ucsc.edu 37 1 244735876 244735876 + Silent SNP A A G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf101 257044 hgsc.bcm.edu;ucsc.edu 37 1 244780931 244780931 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf103 0 broad.mit.edu 37 1 111490408 111490409 + 3'UTR DEL CA - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf103 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111494385 111494385 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf103 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111494480 111494480 + Silent SNP A A T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf103 0 hgsc.bcm.edu;ucsc.edu 37 1 111490650 111490652 + In_Frame_Del DEL TCT TCT - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf103 0 hgsc.bcm.edu;ucsc.edu 37 1 111494207 111494207 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf104 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155290610 155290610 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf106 55765 hgsc.bcm.edu;ucsc.edu 37 1 200880644 200880647 + Frame_Shift_Del DEL CACT CACT - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 CACT CACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf107 0 hgsc.bcm.edu 37 1 210010524 210010524 + Missense_Mutation SNP G G A rs41274840 bycluster;byfrequency;by1000genomes TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf109 54955 hgsc.bcm.edu;ucsc.edu 37 1 38148845 38148845 + Intron SNP G G C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf110 339512 broad.mit.edu 37 1 162825574 162825579 + Intron DEL GAGTTG - - novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 GAGTTG GAGTTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf110 339512 broad.mit.edu;ucsc.edu 37 1 162824983 162824983 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf110 339512 hgsc.bcm.edu 37 1 162829286 162829286 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf111 284680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 162343974 162343974 + Missense_Mutation SNP C C T rs17853130 bycluster;byfrequency TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf112 55732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169773348 169773348 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf112 55732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169811586 169811586 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf112 55732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169822055 169822055 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf112 55732 hgsc.bcm.edu;ucsc.edu 37 1 169793714 169793714 + Intron SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf112 55732 hgsc.bcm.edu;ucsc.edu 37 1 169793715 169793715 + Intron SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf114 57821 broad.mit.edu 37 1 169388166 169388166 + Intron SNP T G G novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf114 57821 broad.mit.edu;hgsc.bcm.edu 37 1 169388196 169388196 + Intron SNP A A G novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf114 57821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169391155 169391155 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf114 57821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169391258 169391258 + Silent SNP A A G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf114 57821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169391358 169391358 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf114 57821 hgsc.bcm.edu;ucsc.edu 37 1 169394116 169394117 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf115 79762 broad.mit.edu 37 1 220871098 220871098 + 3'UTR DEL G - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf116 79098 broad.mit.edu;ucsc.edu 37 1 207200938 207200938 + Silent SNP G C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf122 127687 broad.mit.edu 37 1 38272900 38272900 + 5'UTR SNP G A A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf122 127687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38274767 38274767 + 3'UTR SNP T T C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf123 54987 broad.mit.edu;hgsc.bcm.edu 37 1 53686011 53686011 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf124 0 broad.mit.edu 37 1 231488147 231488148 + Intron INS - T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf124 0 broad.mit.edu;hgsc.bcm.edu 37 1 231489083 231489083 + Silent SNP A A G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf124 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 231487063 231487063 + Missense_Mutation SNP T T G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf125 0 hgsc.bcm.edu 37 1 179504035 179504040 + In_Frame_Del DEL AAGAAC AAGAAC - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 AAGAAC AAGAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf125 0 hgsc.bcm.edu 37 1 179504035 179504040 + In_Frame_Del DEL AAGAAC AAGAAC - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 AAGAAC AAGAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf128 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24106410 24106410 + Nonsense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170914714 170914714 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170964596 170964596 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170965678 170965678 + Silent SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170985418 170985418 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf129 0 broad.mit.edu;ucsc.edu 37 1 170914697 170914697 + 5'UTR SNP C T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf131 128061 broad.mit.edu 37 1 231360348 231360348 + 3'UTR SNP C G G novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf135 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26162026 26162026 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf135 0 hgsc.bcm.edu 37 1 26162205 26162205 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf144 0 broad.mit.edu 37 1 16722101 16722101 + 3'UTR DEL T - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182869151 182869151 + Silent SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182908433 182908433 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf14 0 hgsc.bcm.edu 37 1 182869245 182869245 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf150 0 hgsc.bcm.edu;ucsc.edu 37 1 247712536 247712536 + Intron SNP C C T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf156 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169762230 169762230 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf157 0 broad.mit.edu 37 1 204006475 204006475 + Intron SNP A C C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf158 93190 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12820749 12820749 + Silent SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf159 54991 broad.mit.edu 37 1 1019876 1019876 + Frame_Shift_Del DEL C - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf159 54991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1021312 1021312 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf161 0 hgsc.bcm.edu 37 1 116670806 116670806 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf162 128346 broad.mit.edu;ucsc.edu 37 1 112019442 112019442 + Silent SNP A C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf168 199920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57189298 57189298 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf168 199920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57258476 57258476 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf168 199920 hgsc.bcm.edu;ucsc.edu 37 1 57185661 57185661 + Intron SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf173 127254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 75037720 75037720 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf173 127254 broad.mit.edu;ucsc.edu 37 1 75102000 75102000 + Silent SNP G T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf173 127254 hgsc.bcm.edu 37 1 75037489 75037489 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf173 127254 hgsc.bcm.edu 37 1 75037497 75037497 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf173 127254 hgsc.bcm.edu 37 1 75102070 75102070 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf174 339448 broad.mit.edu 37 1 3806265 3806266 + 3'UTR DEL AA - - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf174 339448 broad.mit.edu 37 1 3806286 3806286 + 3'UTR DEL G - - novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf174 339448 broad.mit.edu 37 1 3806288 3806291 + 3'UTR DEL AAGG - - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 AAGG AAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf175 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55166858 55166858 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf183 0 broad.mit.edu 37 1 112269334 112269335 + 3'UTR DEL CA - - rs140925986 bycluster;by1000genomes TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf198 84886 broad.mit.edu 37 1 230979640 230979640 + Missense_Mutation SNP A T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf198 84886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230991424 230991424 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf201 0 hgsc.bcm.edu;ucsc.edu 37 1 24710488 24710488 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf204 284677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159811018 159811018 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf212 0 broad.mit.edu 37 1 35320643 35320643 + 3'UTR SNP C G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf213 148898 broad.mit.edu 37 1 23696047 23696047 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf216 127703 hgsc.bcm.edu;ucsc.edu 37 1 36181451 36181451 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf228 339541 broad.mit.edu 37 1 45191175 45191175 + 3'UTR SNP C T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf25 0 broad.mit.edu 37 1 185125887 185125887 + 5'UTR SNP G C C rs184462697 by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf25 0 broad.mit.edu;hgsc.bcm.edu 37 1 185089094 185089094 + 3'UTR SNP T T G novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf25 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185108635 185108635 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf25 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185109279 185109279 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf25 0 hgsc.bcm.edu;ucsc.edu 37 1 185094228 185094228 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf26 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185143987 185143987 + Silent SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf26 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185259906 185259906 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf26 0 hgsc.bcm.edu 37 1 185137461 185137461 + Intron SNP A A T rs56166198 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf26 0 hgsc.bcm.edu 37 1 185137462 185137462 + Splice_Region SNP T T A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf26 0 hgsc.bcm.edu 37 1 185137462 185137462 + Splice_Region SNP T T A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf26 0 hgsc.bcm.edu;ucsc.edu 37 1 185171842 185171844 + In_Frame_Del DEL AAG AAG - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf27 54953 hgsc.bcm.edu 37 1 186363069 186363069 + Splice_Region SNP G G T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf27 54953 hgsc.bcm.edu 37 1 186363069 186363069 + Splice_Region SNP G G T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf31 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234509989 234509989 + Nonsense_Mutation SNP G G T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf49 0 broad.mit.edu 37 1 178491785 178491786 + Intron INS - T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf49 0 broad.mit.edu 37 1 178492550 178492550 + 3'UTR SNP A G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf52 148423 broad.mit.edu 37 1 85725279 85725279 + Missense_Mutation SNP G A A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf52 148423 broad.mit.edu 37 1 85725354 85725360 + 5'UTR DEL CCGGAAA - - rs112918702 unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 CCGGAAA CCGGAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf52 148423 broad.mit.edu 37 1 85725354 85725360 + 5'UTR DEL CCGGAAA - - rs112918702 unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 CCGGAAA CCGGAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf52 148423 hgsc.bcm.edu 37 1 85725117 85725118 + Frame_Shift_Ins INS - - TA novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf52 148423 hgsc.bcm.edu;ucsc.edu 37 1 85718361 85718361 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf52 148423 hgsc.bcm.edu;ucsc.edu 37 1 85724326 85724326 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf55 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226180697 226180697 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf55 0 hgsc.bcm.edu;ucsc.edu 37 1 226180618 226180618 + Silent SNP T T C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf56 54964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151021076 151021076 + Silent SNP A A G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf56 54964 hgsc.bcm.edu;ucsc.edu 37 1 151022955 151022955 + 3'UTR SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf59 0 broad.mit.edu 37 1 109191118 109191119 + 3'UTR INS - A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf59 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109202538 109202538 + 5'UTR SNP A A C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf59 0 hgsc.bcm.edu;ucsc.edu 37 1 109191427 109191427 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf63 57035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 25573155 25573160 + In_Frame_Del DEL GAACCC GAACCC - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 GAACCC GAACCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf63 57035 hgsc.bcm.edu 37 1 25569164 25569164 + Silent SNP A A C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf63 57035 hgsc.bcm.edu 37 1 25569164 25569164 + Silent SNP A A C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf65 164127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223568377 223568377 + Silent SNP C C T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf65 164127 hgsc.bcm.edu 37 1 223568115 223568115 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf74 148304 hgsc.bcm.edu;ucsc.edu 37 1 209956952 209956953 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf77 0 broad.mit.edu 37 1 153616229 153616230 + Intron DEL AG - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf83 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54562078 54562078 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf84 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43868851 43868851 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq C1orf84(dist=13384) 0 broad.mit.edu;hgsc.bcm.edu 37 1 43885949 43885949 + IGR SNP C C T novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf85 112770 hgsc.bcm.edu 37 1 156264685 156264685 + Silent SNP T T G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf85 112770 hgsc.bcm.edu 37 1 156264685 156264685 + Silent SNP T T G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf86 199990 broad.mit.edu 37 1 2116266 2116266 + 3'UTR SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf86 199990 hgsc.bcm.edu 37 1 2121164 2121164 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf86 199990 hgsc.bcm.edu 37 1 2121164 2121164 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf91 0 broad.mit.edu 37 1 32681941 32681941 + 3'UTR SNP G T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf91 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32682463 32682463 + Silent SNP A A T novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1orf91 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32686772 32686772 + Silent SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1orf94 84970 broad.mit.edu 37 1 34666597 34666597 + Nonsense_Mutation SNP C T T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf94 84970 broad.mit.edu 37 1 34684572 34684577 + 3'UTR DEL ACACAT - - rs3831264 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 ACACAT ACACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf94 84970 broad.mit.edu 37 1 34684572 34684577 + 3'UTR DEL ACACAT - - rs3831264 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 ACACAT ACACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf94 84970 broad.mit.edu 37 1 34684572 34684577 + 3'UTR DEL ACACAT - - rs3831264 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 ACACAT ACACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf94 84970 broad.mit.edu;ucsc.edu 37 1 34677961 34677961 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1orf94 84970 broad.mit.edu;ucsc.edu 37 1 34684328 34684328 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1QA 712 hgsc.bcm.edu 37 1 22965443 22965443 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1QC 714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22973841 22973841 + Silent SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1QL1 10882 hgsc.bcm.edu 37 17 43037729 43037729 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1QL3 389941 broad.mit.edu 37 10 16563566 16563567 + 5'UTR INS - CCT CCT novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1QL3 389941 broad.mit.edu 37 10 16563614 16563614 + 5'UTR DEL T - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C1QTNF4 114900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47611595 47611595 + Silent SNP G G C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1QTNF9 338872 broad.mit.edu;hgsc.bcm.edu 37 13 24893010 24893010 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1QTNF9 338872 hgsc.bcm.edu 37 13 24892967 24892967 + Missense_Mutation SNP C C T rs71429861 bycluster;byfrequency TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1QTNF9 338872 hgsc.bcm.edu 37 13 24895240 24895240 + Silent SNP G G A rs3751354 bycluster;byfrequency TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1QTNF9 338872 hgsc.bcm.edu 37 13 24895805 24895805 + Missense_Mutation SNP G G A rs4589405 bycluster;byfrequency;by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1R 715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7242701 7242701 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1R 715 hgsc.bcm.edu 37 12 7188437 7188437 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1R 715 hgsc.bcm.edu;ucsc.edu 37 12 7189386 7189386 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1RL 51279 hgsc.bcm.edu 37 12 7249550 7249550 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1RL 51279 hgsc.bcm.edu 37 12 7261734 7261734 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C1S 716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7174353 7174353 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1S 716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7177661 7177661 + Silent SNP T T G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C1S 716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7177889 7177889 + Silent SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf103 0 broad.mit.edu;hgsc.bcm.edu 37 20 9495509 9495509 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf103 0 broad.mit.edu;hgsc.bcm.edu 37 20 9510488 9510488 + 3'UTR SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf103 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 9496942 9496942 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf106 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 55101052 55101052 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf106 0 hgsc.bcm.edu;ucsc.edu 37 20 55100907 55100914 + Frame_Shift_Del DEL AAAGAAAA AAAGAAAA - novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 AAAGAAAA AAAGAAAA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf107 0 broad.mit.edu 37 20 55108443 55108443 + Intron SNP T C C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf107 0 hgsc.bcm.edu 37 20 55108625 55108625 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf108 0 hgsc.bcm.edu;ucsc.edu 37 20 54941313 54941314 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf112 140688 broad.mit.edu;hgsc.bcm.edu 37 20 31035602 31035602 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf114 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31873889 31873889 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61574871 61574871 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf11 0 hgsc.bcm.edu;ucsc.edu 37 20 61576211 61576214 + Frame_Shift_Del DEL AAAT AAAT - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 AAAT AAAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf117 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 35414908 35414908 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf117 0 hgsc.bcm.edu 37 20 35431379 35431379 + Silent SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf118 140711 broad.mit.edu;ucsc.edu 37 20 35507457 35507457 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf132 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 35772198 35772198 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf132 0 hgsc.bcm.edu 37 20 35752076 35752077 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf132 0 hgsc.bcm.edu 37 20 35776241 35776241 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf132 0 hgsc.bcm.edu 37 20 35776241 35776241 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf132 0 hgsc.bcm.edu 37 20 35776260 35776260 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf135 0 broad.mit.edu 37 20 62493290 62493290 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf141 128653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2795845 2795845 + Silent SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf152 0 hgsc.bcm.edu;ucsc.edu 37 20 34611538 34611538 + Silent SNP C C A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf160 0 broad.mit.edu 37 20 30610277 30610277 + Intron SNP C T T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf165 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44515557 44515557 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf165 0 hgsc.bcm.edu 37 20 44515205 44515205 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf166 128826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61167749 61167749 + Silent SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf185 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31657707 31657707 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf186 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31690805 31690805 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf186 0 broad.mit.edu;ucsc.edu 37 20 31671267 31671267 + Silent SNP T C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf186 0 hgsc.bcm.edu 37 20 31670984 31670984 + Intron SNP A A G rs13037799 bycluster;by1000genomes TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf186 0 hgsc.bcm.edu 37 20 31670984 31670984 + Intron SNP A A G rs13037799 bycluster;by1000genomes TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf186 0 hgsc.bcm.edu;ucsc.edu 37 20 31691896 31691896 + Intron SNP A A G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf191 0 broad.mit.edu 37 20 26084148 26084148 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf191 0 hgsc.bcm.edu 37 20 26084175 26084175 + RNA SNP G G A rs61752033 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf191 0 hgsc.bcm.edu 37 20 26084228 26084228 + RNA SNP G G A rs75212180 bycluster;byfrequency TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf191 0 hgsc.bcm.edu 37 20 26084251 26084251 + RNA SNP C C T rs61752036 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf191 0 hgsc.bcm.edu 37 20 26084261 26084261 + RNA SNP A A G rs61752354 bycluster;byfrequency TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf191 0 hgsc.bcm.edu 37 20 26084261 26084261 + RNA SNP A A G rs61752354 bycluster;byfrequency TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf194 25943 broad.mit.edu;hgsc.bcm.edu 37 20 3355713 3355713 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf194 25943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3278767 3278767 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf196 149840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 5843933 5843933 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf202 400831 broad.mit.edu 37 20 1184139 1184139 + 5'UTR SNP C T T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf24 55969 broad.mit.edu 37 20 35240822 35240823 + 3'UTR INS - ATCA ATCA novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf24 55969 broad.mit.edu;ucsc.edu 37 20 35238021 35238021 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf26 26074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 20243669 20243669 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf26 26074 broad.mit.edu;ucsc.edu 37 20 20123553 20123553 + Silent SNP G A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf26 26074 hgsc.bcm.edu 37 20 20140084 20140084 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf26 26074 hgsc.bcm.edu;ucsc.edu 37 20 20243667 20243667 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf26 26074 hgsc.bcm.edu;ucsc.edu 37 20 20269500 20269500 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf29 0 hgsc.bcm.edu;ucsc.edu 37 20 3802931 3802931 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf30 0 hgsc.bcm.edu 37 20 5081570 5081570 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf30 0 hgsc.bcm.edu 37 20 5081570 5081570 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34828159 34828159 + Silent SNP G G C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34843594 34843594 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf43 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 55049773 55049773 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf43 0 hgsc.bcm.edu;ucsc.edu 37 20 55088389 55088389 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1162182 1162183 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf70 0 hgsc.bcm.edu;ucsc.edu 37 20 31761897 31761897 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf71 0 hgsc.bcm.edu;ucsc.edu 37 20 31815351 31815351 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf7 0 hgsc.bcm.edu 37 20 13769227 13769227 + RNA SNP T T C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf7 0 hgsc.bcm.edu 37 20 13797851 13797851 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf79 0 broad.mit.edu 37 20 18794966 18794966 + 3'UTR SNP T C C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C20orf79 0 broad.mit.edu;hgsc.bcm.edu 37 20 18794406 18794406 + 5'UTR SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf79 0 broad.mit.edu;hgsc.bcm.edu 37 20 18794452 18794452 + 5'UTR SNP A A G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf79 0 hgsc.bcm.edu 37 20 18794843 18794843 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf79 0 hgsc.bcm.edu;ucsc.edu 37 20 18794787 18794787 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C20orf85 128602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56728656 56728656 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf94 0 broad.mit.edu;hgsc.bcm.edu 37 20 10603312 10603312 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C20orf94 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10604013 10604013 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf128 150147 broad.mit.edu 37 21 43522449 43522449 + 3'UTR SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf128 150147 hgsc.bcm.edu;ucsc.edu 37 21 43523966 43523966 + RNA SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C21orf129 0 broad.mit.edu 37 21 43137710 43137710 + 5'Flank DEL G - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf29 0 broad.mit.edu 37 21 45950936 45950936 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx C21orf34 0 hgsc.bcm.edu 37 21 17566954 17566954 + RNA SNP G G T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf34 0 hgsc.bcm.edu;ucsc.edu 37 21 17763931 17763931 + RNA SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf45 0 broad.mit.edu 37 21 33641107 33641107 + 3'UTR DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf45 0 broad.mit.edu 37 21 33641251 33641251 + 3'UTR SNP C T T rs11557587 unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf45 0 broad.mit.edu 37 21 33641251 33641251 + 3'UTR SNP C T T rs11557587 unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf45 0 broad.mit.edu 37 21 33641252 33641252 + 3'UTR SNP T C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33642036 33642036 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33642768 33642768 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf56 0 broad.mit.edu;hgsc.bcm.edu 37 21 47588274 47588274 + Silent SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf56 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47588323 47588323 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf58 54058 hgsc.bcm.edu 37 21 47722405 47722405 + Silent SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf59 56683 hgsc.bcm.edu;ucsc.edu 37 21 33979947 33979947 + RNA SNP A A G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf63 0 broad.mit.edu 37 21 33840213 33840214 + Intron INS - AT AT novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf63 0 hgsc.bcm.edu 37 21 33846044 33846044 + Intron SNP T T C rs75300206 bycluster;byfrequency;by1000genomes TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C21orf63 0 hgsc.bcm.edu 37 21 33848192 33848192 + Intron SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf63 0 hgsc.bcm.edu 37 21 33849002 33849002 + Intron SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C21orf63 0 hgsc.bcm.edu 37 21 33863217 33863217 + Intron SNP T T A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C21orf63 0 hgsc.bcm.edu 37 21 33866814 33866814 + Intron SNP C C T rs55781237 bycluster;byfrequency;by1000genomes TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C21orf63 0 hgsc.bcm.edu;ucsc.edu 37 21 33848019 33848019 + Intron SNP T T C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf63 0 hgsc.bcm.edu;ucsc.edu 37 21 33848130 33848130 + Intron SNP A A G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf67 84536 broad.mit.edu 37 21 46353962 46353962 + 3'UTR SNP G T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf70 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46363676 46363676 + Silent SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C21orf93 0 hgsc.bcm.edu 37 21 46723194 46723194 + 3'UTR SNP A A T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C21orf99 0 broad.mit.edu 37 21 14414855 14414855 + RNA SNP A G G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf99 0 broad.mit.edu 37 21 14414855 14414855 + RNA SNP A G G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf99 0 broad.mit.edu 37 21 14417489 14417489 + RNA SNP C G G novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf99 0 broad.mit.edu 37 21 14424153 14424153 + RNA SNP C A A rs10439727 bycluster;byfrequency;by1000genomes TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf99 0 broad.mit.edu 37 21 14437700 14437700 + RNA DEL A - - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf99 0 broad.mit.edu 37 21 14439197 14439197 + RNA SNP G C C rs184573568 by1000genomes TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C21orf99 0 broad.mit.edu 37 21 14439357 14439357 + RNA SNP C G G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf13 0 broad.mit.edu 37 22 24938958 24938958 + 3'UTR SNP C T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf15 150248 broad.mit.edu 37 22 24107238 24107238 + Intron SNP C T T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf23 84645 broad.mit.edu 37 22 38340062 38340062 + 3'UTR DEL G - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf24 25775 broad.mit.edu 37 22 32330002 32330002 + 3'UTR SNP C T T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf25 0 broad.mit.edu 37 22 20043311 20043312 + Intron INS - G G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf30 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32108234 32108234 + Missense_Mutation SNP C C T rs143043548 bycluster;byfrequency;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf30 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32112375 32112375 + Missense_Mutation SNP G G C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf30 0 hgsc.bcm.edu 37 22 32134370 32134370 + Splice_Region SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C22orf30 0 hgsc.bcm.edu;ucsc.edu 37 22 32108910 32108910 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C22orf30 0 hgsc.bcm.edu;ucsc.edu 37 22 32109361 32109361 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf30 0 hgsc.bcm.edu;ucsc.edu 37 22 32112085 32112085 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C22orf30 0 hgsc.bcm.edu;ucsc.edu 37 22 32113207 32113207 + Silent SNP C C G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C22orf31 25770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 29456415 29456415 + Silent SNP T T C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf36 0 hgsc.bcm.edu;ucsc.edu 37 22 24984203 24984204 + In_Frame_Ins INS - - GCA novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50994825 50994825 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf42 150297 broad.mit.edu;hgsc.bcm.edu 37 22 32555121 32555121 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf42 150297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32555106 32555106 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf9 0 broad.mit.edu 37 22 45601765 45601765 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C22orf9 0 broad.mit.edu;hgsc.bcm.edu 37 22 45601754 45601754 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45607978 45607978 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C22orf9 0 hgsc.bcm.edu 37 22 45601731 45601731 + Silent SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2 717 broad.mit.edu;hgsc.bcm.edu 37 6 31912529 31912529 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2CD2 25966 broad.mit.edu 37 21 43338331 43338331 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2CD2 25966 broad.mit.edu;hgsc.bcm.edu 37 21 43327923 43327923 + Intron SNP C C A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2CD3 26005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73753116 73753116 + Silent SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2CD3 26005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73825591 73825591 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2CD3 26005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73850649 73850649 + Splice_Site SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2CD3 26005 hgsc.bcm.edu;ucsc.edu 37 11 73814557 73814557 + Silent SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf16 84226 hgsc.bcm.edu;ucsc.edu 37 2 27799674 27799674 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf16 84226 hgsc.bcm.edu;ucsc.edu 37 2 27801317 27801317 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf18 0 broad.mit.edu 37 2 27001276 27001276 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf24 0 hgsc.bcm.edu 37 2 220038162 220038162 + Silent SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf27A 29798 broad.mit.edu 37 2 132508382 132508382 + 5'UTR SNP C T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf27A 29798 broad.mit.edu;hgsc.bcm.edu 37 2 132509139 132509139 + Silent SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf28 0 broad.mit.edu 37 2 27439991 27439991 + 3'UTR SNP G A A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf28 0 broad.mit.edu 37 2 27440014 27440014 + 3'UTR DEL T - - rs139002612 bycluster;by1000genomes TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf28 0 broad.mit.edu 37 2 27440014 27440014 + 3'UTR DEL T - - rs139002612 bycluster;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf29 55571 broad.mit.edu 37 2 101886151 101886152 + 3'UTR DEL TT - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf29 55571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 101883240 101883240 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf29 55571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 101885790 101885790 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf29 55571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 101885856 101885856 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 75893178 75893178 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 75907426 75907426 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf39 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26647271 26647271 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf39 0 hgsc.bcm.edu 37 2 26671607 26671607 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf42 54980 hgsc.bcm.edu 37 2 70408353 70408354 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf43 60526 hgsc.bcm.edu;ucsc.edu 37 2 20990106 20990106 + Silent SNP A A T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf44 80304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24261024 24261024 + Silent SNP G G C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf47 79568 broad.mit.edu;hgsc.bcm.edu 37 2 200826508 200826508 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf49 79074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105959481 105959481 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf52 0 broad.mit.edu;hgsc.bcm.edu 37 2 232373743 232373743 + RNA SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf53 339779 hgsc.bcm.edu;ucsc.edu 37 2 27360063 27360063 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf55 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99448880 99448880 + Silent SNP G G A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf56 0 hgsc.bcm.edu 37 2 37458771 37458771 + upstream SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf57 165100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232457795 232457795 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf57 165100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232458055 232458055 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf60 0 broad.mit.edu 37 2 200795492 200795493 + 3'UTR INS - AGAA AGAA rs10674968 bycluster;byfrequency;by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf60 0 hgsc.bcm.edu;ucsc.edu 37 2 200797973 200797973 + Silent SNP A A G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf61 285051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 47382357 47382357 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf62 375307 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219232614 219232614 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf65 130951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74808954 74808954 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf65 130951 hgsc.bcm.edu;ucsc.edu 37 2 74787365 74787365 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf66 401027 hgsc.bcm.edu;ucsc.edu 37 2 197674050 197674050 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf67 0 broad.mit.edu 37 2 210887820 210887820 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf67 0 broad.mit.edu 37 2 210896049 210896049 + Intron SNP T G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf67 0 broad.mit.edu 37 2 210905056 210905056 + Intron SNP T C C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf67 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 210889861 210889861 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf67 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 211018808 211018808 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf67 0 broad.mit.edu;ucsc.edu 37 2 210889826 210889826 + Splice_Site SNP G A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf67 0 hgsc.bcm.edu 37 2 210896230 210896230 + Silent SNP A A T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf67 0 hgsc.bcm.edu 37 2 211018604 211018604 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf68 388969 broad.mit.edu 37 2 85835903 85835903 + 3'UTR SNP G A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf69 205327 hgsc.bcm.edu;ucsc.edu 37 2 200790244 200790244 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf70 339778 hgsc.bcm.edu 37 2 26800423 26800423 + Missense_Mutation SNP G G A rs182524035 by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf71 388939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29295510 29295510 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf71 388939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29295855 29295855 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf71 388939 hgsc.bcm.edu 37 2 29287926 29287927 + In_Frame_Ins INS - - GCT novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf71 388939 hgsc.bcm.edu 37 2 29287926 29287927 + In_Frame_Ins INS - - GCT novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf77 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170505718 170505718 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf77 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170506866 170506866 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf77 0 hgsc.bcm.edu;ucsc.edu 37 2 170505754 170505754 + Nonsense_Mutation SNP C C A rs138449065 by1000genomes;alternate_allele TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf78 388960 broad.mit.edu;ucsc.edu 37 2 74043728 74043728 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf78 388960 hgsc.bcm.edu 37 2 74042659 74042659 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf78 388960 hgsc.bcm.edu 37 2 74042713 74042713 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf78 388960 hgsc.bcm.edu 37 2 74043341 74043342 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf80 389073 broad.mit.edu 37 2 209030330 209030331 + 3'UTR INS - T T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf80 389073 broad.mit.edu 37 2 209051784 209051784 + 5'UTR SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf80 389073 hgsc.bcm.edu 37 2 209051692 209051692 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf81 388963 broad.mit.edu 37 2 74642858 74642858 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf83 56918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228497787 228497787 + Silent SNP G G A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf85 0 broad.mit.edu 37 2 242815348 242815348 + Missense_Mutation SNP G C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C2orf85 0 hgsc.bcm.edu 37 2 242815059 242815059 + Missense_Mutation SNP C C T rs28368764 byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C2orf86 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63401948 63401948 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf86 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63631341 63631341 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf88 84281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191064624 191064624 + Missense_Mutation SNP C C G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf89 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85066361 85066361 + Silent SNP G G T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C2orf89 0 broad.mit.edu;ucsc.edu 37 2 85097390 85097390 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3 718 broad.mit.edu 37 19 6694615 6694615 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6681963 6681963 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6686809 6686809 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6697533 6697533 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6712358 6712358 + Silent SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6714022 6714022 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3 718 hgsc.bcm.edu;ucsc.edu 37 19 6702221 6702221 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3AR1 719 broad.mit.edu 37 12 8211158 8211158 + 3'UTR SNP T A A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3AR1 719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 8212018 8212018 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3AR1 719 hgsc.bcm.edu;ucsc.edu 37 12 8211783 8211783 + Silent SNP G G A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf10 0 hgsc.bcm.edu 37 3 10167959 10167959 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf10 0 hgsc.bcm.edu;ucsc.edu 37 3 10167959 10167959 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119217644 119217644 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119242475 119242475 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf17 25871 broad.mit.edu;hgsc.bcm.edu 37 3 112724334 112724334 + RNA SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf17 25871 broad.mit.edu;hgsc.bcm.edu 37 3 112732116 112732116 + RNA SNP T T C novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf21 0 hgsc.bcm.edu 37 3 194846096 194846096 + Intron SNP C C G rs58434965 bycluster;byfrequency;by1000genomes TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf21 0 hgsc.bcm.edu;ucsc.edu 37 3 194790608 194790612 + Frame_Shift_Del DEL CCATG CCATG - novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 CCATG CCATG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf21 0 hgsc.bcm.edu;ucsc.edu 37 3 194838463 194838463 + Intron SNP C C T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf23 0 broad.mit.edu 37 3 44399953 44399954 + Intron INS - A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf25 0 broad.mit.edu;hgsc.bcm.edu 37 3 129127513 129127513 + Silent SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf25 0 hgsc.bcm.edu;ucsc.edu 37 3 129140395 129140395 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf27 23434 hgsc.bcm.edu 37 3 128292319 128292320 + Frame_Shift_Del DEL TC TC - rs147519916 bycluster;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf30 152405 hgsc.bcm.edu 37 3 118865300 118865300 + Silent SNP C C A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf32 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 8673776 8673776 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf32 0 hgsc.bcm.edu 37 3 8675505 8675506 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf33 285315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 155493591 155493591 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf34 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196434643 196434643 + Nonsense_Mutation SNP C C A rs139813132 by1000genomes;alternate_allele TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf35 339883 broad.mit.edu 37 3 37459335 37459336 + Intron DEL AC - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf36 80111 hgsc.bcm.edu 37 3 133647487 133647487 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf37 56941 broad.mit.edu;hgsc.bcm.edu 37 3 129023468 129023468 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf37 56941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128998744 128998744 + Silent SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf42 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10326626 10326626 + RNA SNP A A C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf45 132228 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50324295 50324295 + Splice_Site SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf45 132228 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50324620 50324620 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf56 285311 hgsc.bcm.edu 37 3 126916036 126916036 + 5'UTR SNP G G A rs140075011 by1000genomes TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf57 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 161064028 161064028 + Silent SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf58 205428 broad.mit.edu 37 3 143691275 143691275 + Nonsense_Mutation SNP C A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf58 205428 broad.mit.edu 37 3 143691724 143691724 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf59 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 192516184 192516184 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf62 375341 broad.mit.edu 37 3 49308392 49308392 + 3'UTR DEL A - - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf62 375341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49314185 49314185 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf63 0 broad.mit.edu 37 3 56655847 56655848 + 3'UTR DEL AA - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf63 0 broad.mit.edu 37 3 56703746 56703746 + Silent SNP A C C rs13094666 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf63 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 56667432 56667432 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf63 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 56667576 56667576 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf63 0 hgsc.bcm.edu 37 3 56716710 56716710 + Missense_Mutation SNP T T C rs113199481 unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf63 0 hgsc.bcm.edu;ucsc.edu 37 3 56662597 56662597 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf65 646600 broad.mit.edu 37 3 185435215 185435215 + 3'UTR DEL A - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf67 200844 broad.mit.edu 37 3 58849097 58849097 + Intron DEL A - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C3orf67 200844 broad.mit.edu;hgsc.bcm.edu 37 3 58923375 58923375 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf67 200844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 58899557 58899557 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf67 200844 hgsc.bcm.edu 37 3 58739534 58739534 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf70 285382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184801259 184801259 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf70 285382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184801263 184801263 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf72 401089 hgsc.bcm.edu 37 3 138669387 138669387 + Silent SNP C C T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3orf72 401089 hgsc.bcm.edu;ucsc.edu 37 3 138668458 138668467 + Frame_Shift_Del DEL GGCATTCGAA GGCATTCGAA - rs141282655 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 GGCATTCGAA GGCATTCGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C3orf75 0 hgsc.bcm.edu;ucsc.edu 37 3 47551730 47551730 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C3P1 388503 hgsc.bcm.edu;ucsc.edu 37 19 10169334 10169334 + 5'UTR SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4BPA 722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207300079 207300079 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4BPA 722 broad.mit.edu;ucsc.edu 37 1 207304992 207304992 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf14 0 hgsc.bcm.edu 37 4 57842799 57842800 + Frame_Shift_Del DEL GC GC - novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf14 0 hgsc.bcm.edu 37 4 57842813 57842813 + Silent SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf14 0 hgsc.bcm.edu;ucsc.edu 37 4 57834621 57834621 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf17 84103 hgsc.bcm.edu 37 4 100443802 100443802 + Silent SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf19 55286 hgsc.bcm.edu;ucsc.edu 37 4 37591832 37591832 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf21 55345 broad.mit.edu 37 4 113539199 113539199 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf21 55345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 113468532 113468532 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf21 55345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 113510905 113510905 + Silent SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf21 55345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 113540750 113540750 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf21 55345 hgsc.bcm.edu;ucsc.edu 37 4 113540563 113540564 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8469669 8469669 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf26 152816 broad.mit.edu 37 4 76489700 76489700 + 3'UTR SNP G T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf27 54969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 170663225 170663225 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf27 54969 hgsc.bcm.edu;ucsc.edu 37 4 170671701 170671701 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf29 80167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 128905506 128905506 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf29 80167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 128905554 128905554 + Silent SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf29 80167 hgsc.bcm.edu 37 4 128949839 128949839 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf29 80167 hgsc.bcm.edu;ucsc.edu 37 4 128949871 128949871 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf31 0 broad.mit.edu 37 4 121957408 121957408 + 3'UTR SNP T C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf31 0 broad.mit.edu;ucsc.edu 37 4 121958431 121958431 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf33 132321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 130023911 130023911 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf36 132989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87808950 87808950 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf37 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 98761954 98761954 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf37 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 98902354 98902354 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf37 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99049685 99049685 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf37 0 hgsc.bcm.edu 37 4 99064290 99064290 + Silent SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf39 0 hgsc.bcm.edu;ucsc.edu 37 4 165878425 165878426 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf40 401137 broad.mit.edu 37 4 71019995 71019995 + Intron SNP C G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf40 401137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71024217 71024217 + Missense_Mutation SNP G G T rs149016682 by1000genomes;alternate_allele TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184585186 184585186 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184601356 184601356 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184618916 184618916 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184629723 184629723 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf41 0 broad.mit.edu;ucsc.edu 37 4 184600619 184600619 + Silent SNP T C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf41 0 hgsc.bcm.edu;ucsc.edu 37 4 184615163 184615163 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf43 0 hgsc.bcm.edu 37 4 164415933 164415933 + 5'UTR SNP C C T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf44 0 hgsc.bcm.edu 37 4 3254960 3254960 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C4orf47 441054 hgsc.bcm.edu 37 4 186366125 186366125 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf47 441054 hgsc.bcm.edu;ucsc.edu 37 4 186366122 186366123 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf48 401115 broad.mit.edu;ucsc.edu 37 4 2045589 2045589 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C4orf49 0 hgsc.bcm.edu;ucsc.edu 37 4 140188044 140188044 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf51 646603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 146650343 146650343 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C4orf52 389203 hgsc.bcm.edu;ucsc.edu 37 4 25916009 25916009 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5 727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123719562 123719562 + Splice_Site SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5 727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123745015 123745015 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5 727 hgsc.bcm.edu 37 9 123742419 123742419 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5 727 hgsc.bcm.edu;ucsc.edu 37 9 123797085 123797085 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5orf13 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 111071196 111071196 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf13 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 111310973 111310973 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf22 55322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 31538433 31538433 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf22 55322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 31538683 31538683 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32789575 32789575 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf23 0 hgsc.bcm.edu;ucsc.edu 37 5 32789785 32789785 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5orf24 134553 broad.mit.edu 37 5 134194790 134194790 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf25 0 broad.mit.edu 37 5 175716419 175716419 + Intron DEL A - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf25 0 broad.mit.edu 37 5 175716594 175716594 + Intron SNP G A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf25 0 broad.mit.edu 37 5 175716597 175716597 + Intron SNP A G G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf25 0 broad.mit.edu 37 5 175717637 175717637 + Silent SNP G A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf25 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 175772242 175772242 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf25 0 hgsc.bcm.edu 37 5 175717557 175717557 + Intron SNP C C T rs56405072 bycluster TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5orf25 0 hgsc.bcm.edu 37 5 175740819 175740819 + Silent SNP T T G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5orf27 202299 hgsc.bcm.edu 37 5 95194571 95194571 + 5'UTR SNP T T C rs13168014 bycluster;byfrequency;by1000genomes TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C5orf28 64417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43446548 43446548 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf33 0 broad.mit.edu 37 5 36241678 36241680 + In_Frame_Del DEL CCA - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf38 153571 broad.mit.edu;ucsc.edu 37 5 2755174 2755174 + 3'UTR SNP C T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf40 0 broad.mit.edu;hgsc.bcm.edu 37 5 156769839 156769839 + 3'UTR SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf4 10826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154200918 154200918 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf41 0 broad.mit.edu 37 5 172561566 172561566 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf41 0 broad.mit.edu 37 5 172563231 172563231 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf42 65250 broad.mit.edu 37 5 37122589 37122589 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf42 65250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37120329 37120329 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf42 65250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37165738 37165738 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf42 65250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37168941 37168941 + Silent SNP T T C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf42 65250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37186442 37186442 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf42 65250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37226660 37226660 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf44 80006 broad.mit.edu;hgsc.bcm.edu 37 5 64946709 64946709 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf44 80006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64933559 64933559 + Silent SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf44 80006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64960063 64960063 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf44 80006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64960070 64960070 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf45 51149 broad.mit.edu 37 5 179287208 179287209 + 5'Flank DEL GT - - rs148609553 bycluster;by1000genomes TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf45 51149 broad.mit.edu 37 5 179287208 179287209 + 5'Flank DEL GT - - rs148609553 bycluster;by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf45 51149 broad.mit.edu 37 5 179287622 179287623 + 5'Flank INS - TA TA rs1611076 bycluster;byfrequency;by1000genomes TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf47 133491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 173426710 173426710 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf47 133491 hgsc.bcm.edu;ucsc.edu 37 5 173426713 173426713 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf51 285636 broad.mit.edu 37 5 41917432 41917432 + 3'UTR SNP A T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf52 100190949 hgsc.bcm.edu;ucsc.edu 37 5 157102208 157102208 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf54 63920 hgsc.bcm.edu;ucsc.edu 37 5 159821900 159821903 + Frame_Shift_Del DEL TCTC TCTC - novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 TCTC TCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf55 116349 broad.mit.edu 37 5 442070 442078 + 3'UTR DEL TTTGGCAAT - - rs150095194 by1000genomes TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 TTTGGCAAT TTTGGCAAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf55 116349 broad.mit.edu 37 5 442986 442986 + 5'UTR SNP T A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C5orf56 441108 hgsc.bcm.edu;ucsc.edu 37 5 131755651 131755651 + Intron SNP C C G rs1003533 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C5orf60 285679 hgsc.bcm.edu 37 5 179071810 179071812 + In_Frame_Del DEL TCC TCC - rs151013485 by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6 729 hgsc.bcm.edu 37 5 41195891 41195891 + Intron SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf10 10665 broad.mit.edu 37 6 32304391 32304391 + Intron SNP C G G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf103 0 broad.mit.edu 37 6 147045502 147045502 + Intron SNP T C C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf103 0 broad.mit.edu 37 6 147124301 147124301 + Intron SNP T C C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf103 0 broad.mit.edu 37 6 147124303 147124303 + Intron SNP C G G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf103 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146975333 146975333 + Silent SNP C C G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf103 0 hgsc.bcm.edu;ucsc.edu 37 6 147022203 147022203 + Silent SNP T T C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf105 0 broad.mit.edu 37 6 11714379 11714380 + 3'UTR INS - CT CT novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf105 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11778959 11778959 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf114 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 13470345 13470345 + Silent SNP T T C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf118 168090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 165715542 165715542 + Missense_Mutation SNP C C T rs143539145 unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf1 221491 broad.mit.edu 37 6 34214269 34214269 + 3'UTR SNP G C C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf132 647024 hgsc.bcm.edu 37 6 42072710 42072715 + In_Frame_Del DEL CTCCTC CTCCTC - rs150599390 by1000genomes TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 CTCCTC CTCCTC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf132 647024 hgsc.bcm.edu 37 6 42075105 42075131 + In_Frame_Del DEL GGTGGGGGTTCCAGCAGCAGGGGAGGT GGTGGGGGTTCCAGCAGCAGGGGAGGT - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGTGGGGGTTCCAGCAGCAGGGGAGGT GGTGGGGGTTCCAGCAGCAGGGGAGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf132 647024 hgsc.bcm.edu 37 6 42075105 42075131 + In_Frame_Del DEL GGTGGGGGTTCCAGCAGCAGGGGAGGT GGTGGGGGTTCCAGCAGCAGGGGAGGT - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 GGTGGGGGTTCCAGCAGCAGGGGAGGT GGTGGGGGTTCCAGCAGCAGGGGAGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf138 0 broad.mit.edu;ucsc.edu 37 6 48035980 48035980 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf138 0 hgsc.bcm.edu 37 6 47846493 47846493 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf138 0 hgsc.bcm.edu;ucsc.edu 37 6 47954229 47954229 + Intron SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf142 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54095578 54095578 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf145 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 3723939 3723939 + Silent SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf146 0 hgsc.bcm.edu;ucsc.edu 37 6 4069047 4069058 + In_Frame_Del DEL CTTTTTGGTCCC CTTTTTGGTCCC - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CTTTTTGGTCCC CTTTTTGGTCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf146 0 hgsc.bcm.edu;ucsc.edu 37 6 4069285 4069285 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID C6orf153 0 broad.mit.edu 37 6 42989414 42989419 + In_Frame_Del DEL GCCGGG - - rs3833662 unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 GCCGGG GCCGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf153 0 broad.mit.edu 37 6 42989414 42989419 + In_Frame_Del DEL GCCGGG - - rs3833662 unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 GCCGGG GCCGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf162 0 broad.mit.edu 37 6 88050928 88050928 + 3'UTR DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf162 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88046871 88046871 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf163 206412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88074934 88074934 + Silent SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf167 0 broad.mit.edu 37 6 97717991 97717991 + Intron DEL A - - novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf167 0 hgsc.bcm.edu 37 6 97629924 97629924 + Missense_Mutation SNP G G C rs189009132 by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf168 0 broad.mit.edu 37 6 99797285 99797285 + 5'UTR SNP C A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf195 154386 broad.mit.edu 37 6 2635010 2635010 + 5'UTR DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf204 0 hgsc.bcm.edu 37 6 118801654 118801654 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf204 0 hgsc.bcm.edu 37 6 118812811 118812813 + In_Frame_Del DEL TGT TGT - rs71866282 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 TGT TGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf211 79624 hgsc.bcm.edu 37 6 151790069 151790069 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf211 79624 hgsc.bcm.edu;ucsc.edu 37 6 151789551 151789551 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf218 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10430189 10430189 + RNA SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf221 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 74073548 74073548 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf222 389384 broad.mit.edu;ucsc.edu 37 6 36294388 36294388 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf222 389384 hgsc.bcm.edu;ucsc.edu 37 6 36291902 36291902 + Intron SNP T T G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf27 0 broad.mit.edu 37 6 31744362 31744362 + Frame_Shift_Del DEL T - - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf27 0 hgsc.bcm.edu;ucsc.edu 37 6 31743892 31743892 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 157744466 157744466 + Silent SNP A A G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf47 57827 broad.mit.edu;hgsc.bcm.edu 37 6 31627292 31627292 + Silent SNP A A G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf47 57827 broad.mit.edu;hgsc.bcm.edu 37 6 31627604 31627604 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf57 135154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71289120 71289120 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf58 352999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 127901450 127901450 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf58 352999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 127902329 127902329 + Nonsense_Mutation SNP T T G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf62 81688 broad.mit.edu 37 6 24719011 24719011 + 5'UTR SNP G T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx C6orf62 81688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24706388 24706388 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq C6orf62 81688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24714642 24714642 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq C6orf64 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39073238 39073238 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf70 55780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 170162545 170162545 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf70 55780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 170179296 170179296 + Silent SNP T T A rs79095717 unknown;alternate_allele TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf89 221477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36882108 36882108 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf97 0 broad.mit.edu 37 6 151939400 151939400 + 3'UTR SNP A G G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C6orf97 0 broad.mit.edu;hgsc.bcm.edu 37 6 151894314 151894314 + Silent SNP G G A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C6orf97 0 hgsc.bcm.edu 37 6 151857578 151857578 + Silent SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C6orf97 0 hgsc.bcm.edu 37 6 151936781 151936781 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7 730 broad.mit.edu 37 5 40959677 40959677 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7 730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40947837 40947837 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf10 79783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40900017 40900017 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf10 79783 hgsc.bcm.edu 37 7 40535918 40535918 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf10 79783 hgsc.bcm.edu;ucsc.edu 37 7 40488943 40488943 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf11 0 hgsc.bcm.edu;ucsc.edu 37 7 40172756 40172756 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf13 129790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156432294 156432294 + RNA SNP G G T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf13 129790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156432295 156432295 + RNA SNP A A T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf23 0 broad.mit.edu;hgsc.bcm.edu 37 7 86848862 86848862 + 5'UTR SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 86826037 86826037 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 86827282 86827282 + Missense_Mutation SNP A A G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf25 79020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42949681 42949681 + Silent SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf27 0 broad.mit.edu 37 7 2577862 2577862 + Silent SNP A G G novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7orf27 0 broad.mit.edu;ucsc.edu 37 7 2577853 2577853 + Silent SNP C G G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7orf27 0 hgsc.bcm.edu 37 7 2579268 2579268 + Missense_Mutation SNP G G A rs147745609 byfrequency TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf28B 0 hgsc.bcm.edu 37 7 6844681 6844681 + Missense_Mutation SNP C C T rs8058 unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf28B 0 hgsc.bcm.edu 37 7 6844681 6844681 + Missense_Mutation SNP C C T rs8058 unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf28B 0 hgsc.bcm.edu 37 7 6863011 6863011 + Intron SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf29 113763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150027696 150027696 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf29 113763 hgsc.bcm.edu;ucsc.edu 37 7 150028096 150028096 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf34 135927 broad.mit.edu 37 7 142637880 142637880 + 3'UTR DEL T - - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7orf41 222166 hgsc.bcm.edu 37 7 30174891 30174891 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf42 0 broad.mit.edu 37 7 66420696 66420696 + 3'UTR SNP A C C rs191949278 by1000genomes;alternate_allele TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7orf45 136263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129847772 129847772 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23728936 23728936 + Silent SNP C C T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23737866 23737866 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf46 0 hgsc.bcm.edu;ucsc.edu 37 7 23737852 23737852 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf49 78996 broad.mit.edu;ucsc.edu 37 7 134853617 134853617 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7orf50 84310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 1037413 1037413 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf51 0 broad.mit.edu;hgsc.bcm.edu 37 7 100088627 100088627 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf51 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100085830 100085830 + Silent SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf51 0 hgsc.bcm.edu 37 7 100086160 100086161 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf51 0 hgsc.bcm.edu;ucsc.edu 37 7 100086161 100086161 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf58 0 broad.mit.edu;hgsc.bcm.edu 37 7 120911339 120911339 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf58 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 120765873 120765873 + Splice_Site SNP G G T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf58 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 120773891 120773891 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf58 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 120782148 120782148 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf58 0 hgsc.bcm.edu;ucsc.edu 37 7 120907350 120907350 + Silent SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf61 402573 broad.mit.edu 37 7 100061715 100061715 + 5'UTR SNP T G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C7orf61 402573 hgsc.bcm.edu;ucsc.edu 37 7 100061219 100061219 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C7orf63 79846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 89937153 89937153 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf63 79846 hgsc.bcm.edu;ucsc.edu 37 7 89891285 89891285 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf66 154907 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108524166 108524166 + Silent SNP A A G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C7orf71 285941 hgsc.bcm.edu;ucsc.edu 37 7 26678853 26678853 + Silent SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C8A 731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57351710 57351710 + Silent SNP A A T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8B 732 broad.mit.edu 37 1 57395015 57395015 + 3'UTR SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8B 732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57415368 57415368 + Missense_Mutation SNP G G A rs150146785 bycluster;byfrequency;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8B 732 hgsc.bcm.edu;ucsc.edu 37 1 57395209 57395209 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C8G 733 hgsc.bcm.edu 37 9 139839785 139839785 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C8orf22 492307 broad.mit.edu 37 8 49987949 49987949 + 3'UTR SNP G C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf31 286122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144124475 144124475 + Silent SNP C C G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf31 286122 hgsc.bcm.edu;ucsc.edu 37 8 144124450 144124450 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C8orf34 116328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 69351861 69351861 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf34 116328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 69621309 69621309 + Nonsense_Mutation SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf34 116328 hgsc.bcm.edu;ucsc.edu 37 8 69351754 69351754 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C8orf37 157657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 96272706 96272706 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf37 157657 hgsc.bcm.edu;ucsc.edu 37 8 96275957 96275962 + In_Frame_Del DEL AATAAG AATAAG - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 AATAAG AATAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf38 0 broad.mit.edu 37 8 95970241 95970242 + 5'UTR INS - T T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf41 0 broad.mit.edu;hgsc.bcm.edu 37 8 33370151 33370151 + 5'UTR SNP A A C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf42 157695 broad.mit.edu 37 8 442623 442623 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf42 157695 hgsc.bcm.edu;ucsc.edu 37 8 444511 444511 + Silent SNP T T C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf44 56260 broad.mit.edu 37 8 67590120 67590120 + Silent SNP C A A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67790811 67790811 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf46 254778 broad.mit.edu 37 8 67405801 67405801 + 5'UTR SNP A G G rs12545784 bycluster;byfrequency;byhapmap;by1000genomes TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf47 203111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99101674 99101674 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf47 203111 hgsc.bcm.edu;ucsc.edu 37 8 99101670 99101670 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf73 0 broad.mit.edu 37 8 144654816 144654816 + Silent SNP T C C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf74 203076 broad.mit.edu 37 8 10558004 10558004 + 3'UTR SNP A G G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf77 0 broad.mit.edu 37 8 146230497 146230498 + 3'UTR INS - G G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf79 0 broad.mit.edu 37 8 12879694 12879695 + 3'UTR INS - T T rs3832585 bycluster;by1000genomes TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C8orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 12879542 12879542 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf79 0 hgsc.bcm.edu;ucsc.edu 37 8 12870213 12870216 + Frame_Shift_Del DEL CTTA CTTA - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CTTA CTTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf84 0 hgsc.bcm.edu 37 8 74005131 74005131 + Missense_Mutation SNP A A G rs59331088 bycluster;by1000genomes TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C8orf86 389649 hgsc.bcm.edu 37 8 38386152 38386152 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9 735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39285281 39285281 + 3'UTR SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9 735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39285282 39285282 + 3'UTR SNP C C T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf102 0 hgsc.bcm.edu;ucsc.edu 37 9 98728933 98728933 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf102(dist=43783) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 98774905 98774905 + IGR SNP A A T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf102(dist=43824) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 98774946 98774946 + IGR SNP A A T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf103 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86258688 86258688 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf106 414318 hgsc.bcm.edu 37 9 132084485 132084485 + Silent SNP A A T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf114 51490 broad.mit.edu 37 9 131587330 131587330 + Splice_Site DEL T - - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf114 51490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131586388 131586388 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf114 51490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131587284 131587284 + Silent SNP A A T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf11 0 broad.mit.edu 37 9 27297126 27297126 + 5'UTR SNP C T T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27296984 27296984 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf116 138162 hgsc.bcm.edu;ucsc.edu 37 9 138387377 138387377 + Silent SNP G G A rs140869229 unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf117 286207 broad.mit.edu 37 9 130475074 130475074 + Silent SNP C A A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf125 0 broad.mit.edu 37 9 104239059 104239059 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf125 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104238212 104238212 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf125 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104238257 104238257 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf125 0 hgsc.bcm.edu;ucsc.edu 37 9 104239229 104239229 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf128 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35826098 35826098 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf131 138724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35044086 35044086 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf131 138724 hgsc.bcm.edu;ucsc.edu 37 9 35043871 35043871 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf140 0 broad.mit.edu 37 9 139959180 139959180 + Silent SNP A G G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf142 286257 hgsc.bcm.edu 37 9 139888287 139888287 + 3'UTR SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf144 0 broad.mit.edu 37 9 34834304 34834304 + Silent SNP C T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf144 0 broad.mit.edu 37 9 34835451 34835451 + Missense_Mutation SNP T G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf144B 0 broad.mit.edu;hgsc.bcm.edu 37 9 34724109 34724109 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf150 0 hgsc.bcm.edu 37 9 12775861 12775862 + In_Frame_Ins INS - - GGCGGCGGC novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf152 401546 broad.mit.edu 37 9 112962443 112962450 + 3'UTR DEL GAAAGAAA - - rs149523033 by1000genomes TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 GAAAGAAA GAAAGAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf153 389766 broad.mit.edu 37 9 88835709 88835710 + 3'UTR INS - T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf153 389766 hgsc.bcm.edu;ucsc.edu 37 9 88844486 88844486 + Silent SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf163 158055 broad.mit.edu 37 9 139379131 139379131 + Silent SNP G A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf16 79095 hgsc.bcm.edu 37 9 130925191 130925191 + Intron SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf16 79095 hgsc.bcm.edu 37 9 130925841 130925841 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf171 389799 hgsc.bcm.edu 37 9 135374869 135374869 + Missense_Mutation SNP C C T rs149346027 bycluster;byfrequency;by1000genomes TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf171 389799 hgsc.bcm.edu 37 9 135413022 135413022 + Silent SNP C C A rs182716958 by1000genomes TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf173 441476 broad.mit.edu 37 9 140147247 140147247 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf173 441476 hgsc.bcm.edu;ucsc.edu 37 9 140146888 140146888 + Splice_Site SNP G G T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf174 100499483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100132270 100132270 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf174 100499483 hgsc.bcm.edu 37 9 100079370 100079371 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf174 100499483 hgsc.bcm.edu 37 9 100092962 100092962 + Silent SNP G G A rs9697229 unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf25 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34402709 34402709 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf3 84909 broad.mit.edu 37 9 97522998 97522998 + Intron SNP A G G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf3 84909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 97823038 97823038 + Silent SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf3 84909 hgsc.bcm.edu 37 9 97522820 97522820 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf3 84909 hgsc.bcm.edu 37 9 97823000 97823000 + Missense_Mutation SNP C C T rs187186964 by1000genomes;alternate_allele TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf41 138199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77632363 77632363 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf43 257169 hgsc.bcm.edu 37 9 116191667 116191667 + 3'UTR SNP G G C rs41276817 bycluster;byfrequency;by1000genomes TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf45 0 broad.mit.edu 37 9 125875319 125875319 + 3'UTR DEL G - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf47 286223 broad.mit.edu 37 9 91607188 91607189 + 3'UTR DEL TC - - rs138739828 bycluster;by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf5 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111855820 111855820 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf5 0 hgsc.bcm.edu 37 9 111798562 111798562 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf5 0 hgsc.bcm.edu;ucsc.edu 37 9 111800395 111800395 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf57 138240 hgsc.bcm.edu;ucsc.edu 37 9 74667326 74667326 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf64 84267 broad.mit.edu 37 9 86554330 86554330 + 3'UTR SNP A G G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf64 84267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86571091 86571091 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf64 84267 hgsc.bcm.edu;ucsc.edu 37 9 86570341 86570341 + Silent SNP C C T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf66 157983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 214612 214612 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf68 0 hgsc.bcm.edu 37 9 4646017 4646017 + Intron SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf72 203228 hgsc.bcm.edu 37 9 27550624 27550624 + Intron SNP G G A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf78 51759 broad.mit.edu 37 9 132595900 132595900 + Intron SNP G C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf78 51759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 132595806 132595806 + Intron SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf79 0 broad.mit.edu;hgsc.bcm.edu 37 9 90497800 90497800 + 5'UTR SNP G G T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf79 0 hgsc.bcm.edu 37 9 90498959 90498959 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf82 0 broad.mit.edu 37 9 26842275 26842275 + 3'UTR DEL A - - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf82 0 hgsc.bcm.edu 37 9 26842572 26842572 + Silent SNP G G A rs146970170 byfrequency TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf82 0 hgsc.bcm.edu;ucsc.edu 37 9 26861129 26861129 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf84 158401 broad.mit.edu;hgsc.bcm.edu 37 9 114484858 114484858 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf84 158401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114454520 114454520 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf84 158401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114518734 114518734 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf84 158401 hgsc.bcm.edu;ucsc.edu 37 9 114490155 114490155 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf85 138241 broad.mit.edu 37 9 74526496 74526496 + 5'UTR DEL G - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx C9orf85 138241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 74526670 74526670 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf86 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139722995 139722995 + Silent SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf89 84270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95874559 95874559 + Missense_Mutation SNP T T A rs147126180 unknown;alternate_allele TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf91 203197 hgsc.bcm.edu 37 9 117396073 117396073 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf91 203197 hgsc.bcm.edu;ucsc.edu 37 9 117386654 117386654 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf93 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 15724841 15724841 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf93 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 15729739 15729739 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf93 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 15777711 15777711 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf93 0 hgsc.bcm.edu 37 9 15744426 15744427 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf93 0 hgsc.bcm.edu;ucsc.edu 37 9 15723685 15723685 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf93 0 hgsc.bcm.edu;ucsc.edu 37 9 15971713 15971713 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID C9orf96 169436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136260828 136260828 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq C9orf98 0 broad.mit.edu 37 9 135702270 135702270 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CA10 56934 broad.mit.edu 37 17 49825236 49825236 + Intron SNP A T T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CA10 56934 broad.mit.edu 37 17 50212364 50212364 + Intron DEL A - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CA10 56934 broad.mit.edu;hgsc.bcm.edu 37 17 49726541 49726541 + Splice_Site SNP A A G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA10 56934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 50149723 50149723 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA10 56934 hgsc.bcm.edu;ucsc.edu 37 17 49726559 49726559 + Silent SNP T T G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CA11 770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49147826 49147826 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA13 377677 hgsc.bcm.edu;ucsc.edu 37 8 86180209 86180209 + Intron SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CA14 23632 broad.mit.edu 37 1 150234002 150234002 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CA14 23632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150235516 150235516 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA4 762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58234007 58234007 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA5B 11238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15768234 15768234 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA5B 11238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15790716 15790716 + Silent SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA5B 11238 hgsc.bcm.edu 37 X 15768226 15768226 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CA5BP 0 broad.mit.edu 37 X 15706858 15706858 + 5'UTR SNP G T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CA6 765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9019022 9019022 + Silent SNP T T C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA7 766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66887326 66887326 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA7 766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66887326 66887326 + Silent SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA9 768 broad.mit.edu;hgsc.bcm.edu 37 9 35676103 35676103 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CA9 768 hgsc.bcm.edu 37 9 35674204 35674204 + Missense_Mutation SNP T T C rs146966274 by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAB39 51719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 231682474 231682474 + Silent SNP C C T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAB39L 81617 broad.mit.edu 37 13 49975699 49975700 + 5'UTR INS - CT CT rs35119981 bycluster;by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CABC1 0 hgsc.bcm.edu 37 1 227153443 227153443 + Splice_Region SNP G G T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CABIN1 23523 broad.mit.edu;hgsc.bcm.edu 37 22 24451598 24451598 + Silent SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24432627 24432627 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24437602 24437602 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24456572 24456572 + Silent SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24463082 24463082 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24563174 24563174 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 hgsc.bcm.edu 37 22 24434873 24434873 + Silent SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CABIN1 23523 hgsc.bcm.edu 37 22 24483439 24483440 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABIN1 23523 hgsc.bcm.edu;ucsc.edu 37 22 24567705 24567705 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CABLES1 91768 broad.mit.edu 37 18 20839629 20839630 + 3'UTR INS - GT GT rs113433428 unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CABLES1 91768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 20716478 20716478 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABLES1 91768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 20814600 20814600 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABLES2 81928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60971621 60971621 + Silent SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CABYR 26256 hgsc.bcm.edu 37 18 21735912 21735912 + Silent SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACHD1 57685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65047954 65047954 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACHD1 57685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65117974 65117974 + Silent SNP T T C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACHD1 57685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65143848 65143848 + Silent SNP T T C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACHD1 57685 hgsc.bcm.edu;ucsc.edu 37 1 65098290 65098290 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1A 773 broad.mit.edu;hgsc.bcm.edu 37 19 13325351 13325351 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1A 773 hgsc.bcm.edu 37 19 13366050 13366050 + Silent SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13325357 13325357 + Silent SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13366037 13366038 + Frame_Shift_Del DEL GC GC - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13414666 13414666 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13419273 13419273 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13566012 13566013 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1B 774 broad.mit.edu 37 9 140918171 140918185 + In_Frame_Del DEL GGAGAAGGAGACCAC - - rs145816559 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGAGAAGGAGACCAC GGAGAAGGAGACCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1B 774 broad.mit.edu;hgsc.bcm.edu 37 9 140904474 140904474 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1B 774 broad.mit.edu;hgsc.bcm.edu 37 9 141015984 141015984 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CACNA1B 774 hgsc.bcm.edu 37 9 140773613 140773613 + Splice_Site SNP T T A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1C 775 broad.mit.edu 37 12 2595320 2595320 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1C 775 broad.mit.edu 37 12 2786435 2786435 + Intron SNP G T T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1C 775 broad.mit.edu 37 12 2786435 2786435 + Intron SNP G T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1C 775 broad.mit.edu 37 12 2794921 2794921 + Missense_Mutation SNP G A A rs71458011 unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1C 775 broad.mit.edu 37 12 2800179 2800179 + Silent SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2566764 2566764 + Nonsense_Mutation SNP A A T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2675675 2675675 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2711091 2711091 + Silent SNP G G T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2778099 2778099 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1C 775 hgsc.bcm.edu 37 12 2719719 2719719 + Nonsense_Mutation SNP G G T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1C 775 hgsc.bcm.edu 37 12 2786309 2786310 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1C 775 hgsc.bcm.edu 37 12 2794977 2794977 + Silent SNP G G A rs56270948 unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1C 775 hgsc.bcm.edu;ucsc.edu 37 12 2702386 2702386 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1D 776 broad.mit.edu;hgsc.bcm.edu 37 3 53845422 53845422 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1D 776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53777118 53777118 + Silent SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1D 776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53844188 53844188 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1D 776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53845394 53845394 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1D 776 hgsc.bcm.edu;ucsc.edu 37 3 53845146 53845146 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1E 777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 181549889 181549889 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1E 777 hgsc.bcm.edu 37 1 181453105 181453105 + Silent SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1E 777 hgsc.bcm.edu 37 1 181706671 181706672 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1E 777 hgsc.bcm.edu;ucsc.edu 37 1 181705481 181705481 + Silent SNP G G A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1F 778 broad.mit.edu;hgsc.bcm.edu 37 X 49066823 49066823 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CACNA1F 778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49071691 49071691 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CACNA1F 778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49072841 49072841 + Splice_Site SNP C C T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1F 778 hgsc.bcm.edu;ucsc.edu 37 X 49089271 49089271 + Intron SNP T T G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1G 8913 broad.mit.edu 37 17 48683592 48683592 + Intron SNP G A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1G 8913 broad.mit.edu;hgsc.bcm.edu 37 17 48647166 48647166 + Splice_Site SNP T T A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1G 8913 broad.mit.edu;hgsc.bcm.edu 37 17 48703992 48703992 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1G 8913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48652948 48652948 + Silent SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1G 8913 broad.mit.edu;ucsc.edu 37 17 48703477 48703477 + Missense_Mutation SNP T A A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1G 8913 hgsc.bcm.edu 37 17 48680508 48680508 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1G 8913 hgsc.bcm.edu 37 17 48692779 48692787 + In_Frame_Del DEL ACTTGTGCA ACTTGTGCA - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 ACTTGTGCA ACTTGTGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1G 8913 hgsc.bcm.edu 37 17 48692787 48692788 + Frame_Shift_Ins INS - - CC novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1G 8913 hgsc.bcm.edu 37 17 48699064 48699064 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1H 8912 broad.mit.edu 37 16 1257814 1257814 + Silent SNP C T T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1H 8912 broad.mit.edu;hgsc.bcm.edu 37 16 1254064 1254064 + Missense_Mutation SNP C C T rs145376050 by1000genomes TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1H 8912 broad.mit.edu;hgsc.bcm.edu 37 16 1260841 1260841 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1H 8912 hgsc.bcm.edu;ucsc.edu 37 16 1248701 1248701 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1I 8911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40062013 40062013 + Splice_Site SNP T T A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1I 8911 broad.mit.edu;ucsc.edu 37 22 40075845 40075845 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA1I 8911 hgsc.bcm.edu 37 22 39966976 39966976 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1I 8911 hgsc.bcm.edu;ucsc.edu 37 22 40038844 40038844 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1I 8911 hgsc.bcm.edu;ucsc.edu 37 22 40078528 40078528 + Missense_Mutation SNP C C T rs185177048 by1000genomes TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA1S 779 broad.mit.edu;hgsc.bcm.edu 37 1 201036117 201036117 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201009799 201009799 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201010703 201010703 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201013477 201013477 + Silent SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201017771 201017771 + Silent SNP T T A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201029869 201029869 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201029896 201029896 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201030579 201030579 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201041938 201041938 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201047117 201047117 + Silent SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201079330 201079330 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA1S 779 hgsc.bcm.edu 37 1 201058500 201058500 + Silent SNP C C A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA2D1 781 broad.mit.edu 37 7 81598283 81598283 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNA2D1 781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 81635088 81635088 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA2D1 781 hgsc.bcm.edu;ucsc.edu 37 7 81594953 81594953 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA2D2 9254 hgsc.bcm.edu 37 3 50513581 50513581 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA2D3 55799 hgsc.bcm.edu;ucsc.edu 37 3 55002553 55002553 + Intron SNP G G T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA2D4 93589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2022187 2022187 + Splice_Site SNP A A G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA2D4 93589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2027490 2027490 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNA2D4 93589 hgsc.bcm.edu 37 12 1919737 1919737 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNA2D4 93589 hgsc.bcm.edu;ucsc.edu 37 12 1919511 1919511 + Intron SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNB1 782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37333729 37333729 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNB1 782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37341384 37341384 + Silent SNP C C T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNB1 782 hgsc.bcm.edu 37 17 37347804 37347804 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNB2 783 broad.mit.edu 37 10 18828670 18828671 + 3'UTR DEL TT - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNB2 783 hgsc.bcm.edu 37 10 18629864 18629864 + Silent SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNB2 783 hgsc.bcm.edu 37 10 18827236 18827237 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNB2 783 hgsc.bcm.edu;ucsc.edu 37 10 18550270 18550270 + Intron SNP T T A rs951045 unknown;alternate_allele TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNB4 785 broad.mit.edu;hgsc.bcm.edu 37 2 152709962 152709962 + Silent SNP T T C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG2 10369 broad.mit.edu;hgsc.bcm.edu 37 22 36960380 36960380 + 3'UTR SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG2 10369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 36960524 36960524 + Silent SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG3 10368 broad.mit.edu;ucsc.edu 37 16 24268220 24268220 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNG3 10368 hgsc.bcm.edu;ucsc.edu 37 16 24268095 24268095 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNG4 27092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65021007 65021007 + Silent SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG5 27091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64875148 64875148 + Silent SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG5 27091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64880873 64880873 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG5 27091 hgsc.bcm.edu;ucsc.edu 37 17 64873504 64873505 + Frame_Shift_Ins INS - - TG novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG6 59285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54515324 54515324 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACNG7 59284 broad.mit.edu 37 19 54445652 54445652 + 3'UTR SNP C A A rs59451715 byfrequency;by1000genomes;alternate_allele TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACNG7 59284 hgsc.bcm.edu;ucsc.edu 37 19 54444777 54444777 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CACNG8 59283 broad.mit.edu 37 19 54483190 54483190 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CACYBP 27101 broad.mit.edu;hgsc.bcm.edu 37 1 174973977 174973977 + Intron SNP T T C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACYBP 27101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 174973753 174973753 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CACYBP 27101 hgsc.bcm.edu;ucsc.edu 37 1 174977836 174977836 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAD 790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27456649 27456649 + Silent SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CAD 790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27457500 27457500 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAD 790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27465207 27465207 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAD 790 hgsc.bcm.edu;ucsc.edu 37 2 27449432 27449432 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAD 790 hgsc.bcm.edu;ucsc.edu 37 2 27454852 27454853 + In_Frame_Ins INS - - GGA novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM1 23705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 115102194 115102194 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM1 23705 hgsc.bcm.edu 37 11 115375030 115375035 + In_Frame_Del DEL AGCCGG AGCCGG - rs147879356 by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 AGCCGG AGCCGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM2 253559 broad.mit.edu;hgsc.bcm.edu 37 3 85961624 85961624 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM2 253559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 85851226 85851226 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM2 253559 hgsc.bcm.edu 37 3 85851255 85851255 + Silent SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CADM2 253559 hgsc.bcm.edu 37 3 85851255 85851255 + Silent SNP A A C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CADM2 253559 hgsc.bcm.edu;ucsc.edu 37 3 85961677 85961677 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CADM3 57863 broad.mit.edu 37 1 159163457 159163457 + Intron SNP G T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CADM3 57863 broad.mit.edu 37 1 159172281 159172281 + 3'UTR DEL T - - novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CADM3 57863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159161760 159161760 + Silent SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM3 57863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159163732 159163732 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADM3 57863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159170640 159170640 + Silent SNP C C T rs143855176 unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADPS2 93664 broad.mit.edu 37 7 121959917 121959917 + 3'UTR DEL A - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CADPS2 93664 broad.mit.edu 37 7 121960005 121960008 + 3'UTR DEL AAAC - - rs139748837 bycluster;by1000genomes TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 AAAC AAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CADPS2 93664 broad.mit.edu 37 7 122303575 122303575 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CADPS2 93664 hgsc.bcm.edu;ucsc.edu 37 7 122114547 122114547 + Frame_Shift_Del DEL C C - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADPS 8618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 62385148 62385148 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADPS 8618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 62423832 62423832 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CADPS 8618 broad.mit.edu;ucsc.edu 37 3 62388785 62388785 + Nonsense_Mutation SNP G A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CADPS 8618 broad.mit.edu;ucsc.edu 37 3 62388786 62388786 + Silent SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAGE1 285782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7373333 7373333 + Silent SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAGE1 285782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7373597 7373597 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALCOCO1 57658 broad.mit.edu 37 12 54105694 54105695 + 3'UTR DEL GA - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALCOCO1 57658 broad.mit.edu 37 12 54106356 54106356 + Intron DEL G - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALCOCO1 57658 broad.mit.edu;ucsc.edu 37 12 54107576 54107576 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALCOCO2 10241 broad.mit.edu 37 17 46940630 46940631 + 3'UTR DEL GT - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALCOCO2 10241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46928942 46928944 + In_Frame_Del DEL GAT GAT - novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 GAT GAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALCR 799 hgsc.bcm.edu;ucsc.edu 37 7 93116284 93116284 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALCRL 10203 hgsc.bcm.edu;ucsc.edu 37 2 188216714 188216714 + Intron SNP G G T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALD1 800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134618353 134618353 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALD1 800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134618404 134618404 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALD1 800 hgsc.bcm.edu 37 7 134576370 134576370 + Intron SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALHM1 255022 hgsc.bcm.edu 37 10 105218252 105218259 + Frame_Shift_Del DEL AGCGGCCG AGCGGCCG - novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 AGCGGCCG AGCGGCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALHM2 51063 broad.mit.edu 37 10 105208932 105208932 + Intron DEL A - - novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALHM2 51063 broad.mit.edu 37 10 105208932 105208932 + Intron DEL A - - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALHM3 119395 broad.mit.edu;hgsc.bcm.edu 37 10 105236264 105236264 + Silent SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALM2 805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 47389525 47389525 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALM3 808 hgsc.bcm.edu 37 19 47112359 47112359 + Intron SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALML4 91860 hgsc.bcm.edu 37 15 68486350 68486350 + 3'UTR SNP C C T novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALML5 51806 hgsc.bcm.edu 37 10 5541230 5541230 + Missense_Mutation SNP T T C rs11546426 bycluster;byfrequency;by1000genomes TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALML6 163688 hgsc.bcm.edu 37 1 1845784 1845784 + 5'Promoter SNP C C T rs2803299 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALML6 163688 hgsc.bcm.edu 37 1 1845784 1845784 + 5'Promoter SNP C C T rs2803299 bycluster;byfrequency;by1000genomes TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CALN1 83698 broad.mit.edu 37 7 71250095 71250095 + 3'UTR DEL G - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CALN1(dist=99954) 0 hgsc.bcm.edu 37 7 71977314 71977314 + IGR SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALR 811 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 13051666 13051666 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CALU 813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128407619 128407619 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK1 8536 broad.mit.edu 37 3 9799318 9799318 + Intron SNP A G G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAMK1 8536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9809372 9809383 + In_Frame_Del DEL TCGTAGATGTCT TCGTAGATGTCT - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 TCGTAGATGTCT TCGTAGATGTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK1D 57118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12595350 12595350 + Silent SNP G G T rs56079552 unknown;alternate_allele TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK1D 57118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12833177 12833177 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK1D 57118 hgsc.bcm.edu;ucsc.edu 37 10 12833227 12833228 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK2A 815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149619293 149619293 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK2B 816 broad.mit.edu 37 7 44269854 44269854 + Intron DEL G - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAMK2B 816 hgsc.bcm.edu 37 7 44266158 44266159 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK2D 817 hgsc.bcm.edu;ucsc.edu 37 4 114378599 114378599 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK2G 818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75574945 75574945 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK2G 818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75612974 75612974 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMK2N1 55450 broad.mit.edu 37 1 20810079 20810079 + 3'UTR SNP T C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAMK4 814 hgsc.bcm.edu;ucsc.edu 37 5 110712609 110712609 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAMKK1 84254 broad.mit.edu;hgsc.bcm.edu 37 17 3786739 3786739 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMKK2 10645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121712085 121712085 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMKK2 10645 hgsc.bcm.edu;ucsc.edu 37 12 121698132 121698132 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAMLG 819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134079711 134079711 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1 157922 broad.mit.edu 37 9 138715799 138715800 + Frame_Shift_Ins INS - T T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAMSAP1 157922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138703212 138703212 + Silent SNP G G A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1 157922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138713195 138713195 + Silent SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1 157922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138713412 138713412 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1 157922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138713812 138713812 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1 157922 hgsc.bcm.edu;ucsc.edu 37 9 138703339 138703339 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAMSAP1L1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200817766 200817766 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1L1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200817767 200817767 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMSAP1L1 0 hgsc.bcm.edu;ucsc.edu 37 1 200801906 200801912 + Frame_Shift_Del DEL AAGAATA AAGAATA - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 AAGAATA AAGAATA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMTA1 23261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 7797034 7797034 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMTA1 23261 hgsc.bcm.edu;ucsc.edu 37 1 7737703 7737703 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAMTA2 23125 broad.mit.edu;hgsc.bcm.edu 37 17 4876239 4876239 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMTA2 23125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4872277 4872277 + Splice_Site SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAMTA2 23125 broad.mit.edu;ucsc.edu 37 17 4877038 4877038 + Silent SNP T C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAMTA2 23125 hgsc.bcm.edu 37 17 4872070 4872071 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAND1 55832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 67696132 67696132 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAND1 55832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 67698394 67698394 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAND1 55832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 67700071 67700071 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAND2 23066 broad.mit.edu 37 3 12856884 12856884 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CANT1 124583 hgsc.bcm.edu;ucsc.edu 37 17 76991241 76991241 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CANX 821 broad.mit.edu 37 5 179155908 179155908 + 3'UTR DEL T - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CANX 821 broad.mit.edu;hgsc.bcm.edu 37 5 179149818 179149818 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAP1 10487 broad.mit.edu 37 1 40537261 40537261 + 3'UTR SNP C A A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAP1 10487 hgsc.bcm.edu 37 1 40535489 40535490 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAP2 10486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17556592 17556592 + Silent SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPG 822 hgsc.bcm.edu 37 2 85628905 85628905 + Intron SNP T T A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN11 11131 broad.mit.edu;hgsc.bcm.edu 37 6 44141055 44141055 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN11 11131 hgsc.bcm.edu 37 6 44140054 44140055 + Frame_Shift_Ins INS - - GGCTGCC novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN11 11131 hgsc.bcm.edu 37 6 44140054 44140055 + Frame_Shift_Ins INS - - GGCTGCC novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN12 147968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39233680 39233680 + Silent SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN12 147968 hgsc.bcm.edu;ucsc.edu 37 19 39225512 39225512 + Splice_Site SNP T T A novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPN12 147968 hgsc.bcm.edu;ucsc.edu 37 19 39229287 39229288 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN13 92291 broad.mit.edu 37 2 30964652 30964652 + Intron SNP T G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPN13 92291 broad.mit.edu 37 2 30964652 30964652 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPN13 92291 broad.mit.edu 37 2 30964652 30964652 + Intron SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPN13 92291 hgsc.bcm.edu 37 2 30968151 30968151 + Intron SNP T T A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPN1 823 broad.mit.edu 37 11 64955442 64955442 + Frame_Shift_Del DEL A - - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPN1 823 hgsc.bcm.edu 37 11 64972256 64972260 + Frame_Shift_Del DEL TTATG TTATG - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 TTATG TTATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN3 825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42652148 42652148 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN3 825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42678049 42678049 + RNA SNP G G T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN3 825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42695072 42695072 + Silent SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN3 825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42702005 42702005 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN3 825 hgsc.bcm.edu;ucsc.edu 37 15 42686505 42686505 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPN3 825 hgsc.bcm.edu;ucsc.edu 37 15 42701963 42701963 + RNA SNP C C G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN5 726 hgsc.bcm.edu 37 11 76825307 76825307 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPN6 827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 110491970 110491970 + Silent SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN6 827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 110494226 110494226 + Nonsense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN6 827 hgsc.bcm.edu 37 X 110494190 110494190 + Silent SNP T T G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPN7 23473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 15292631 15292631 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN9 10753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230891141 230891141 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPN9 10753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230910375 230910375 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPNS1 826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36640752 36640752 + 3'UTR SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPRIN2 65981 broad.mit.edu 37 12 30881470 30881477 + Intron DEL CAGAGTGT - - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 CAGAGTGT CAGAGTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPRIN2 65981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 30868061 30868061 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPRIN2 65981 hgsc.bcm.edu 37 12 30873742 30873742 + Splice_Region SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPRIN2 65981 hgsc.bcm.edu;ucsc.edu 37 12 30872063 30872063 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAPS2 84698 hgsc.bcm.edu;ucsc.edu 37 12 75716783 75716783 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPSL 133690 broad.mit.edu 37 5 35904525 35904525 + 3'UTR DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPSL 133690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35921149 35921149 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPZA1 829 broad.mit.edu 37 1 113212821 113212821 + 3'UTR SNP A G G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPZA1 829 broad.mit.edu;ucsc.edu 37 1 113192053 113192053 + Silent SNP A T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAPZA2 830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116533094 116533094 + Silent SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPZA2 830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116538867 116538867 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPZA2 830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116556165 116556165 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPZA3 93661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 18891595 18891595 + Silent SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAPZB 832 hgsc.bcm.edu 37 1 19683945 19683945 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD10 29775 broad.mit.edu;ucsc.edu 37 22 37893039 37893039 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CARD10 29775 hgsc.bcm.edu 37 22 37891824 37891824 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD10 29775 hgsc.bcm.edu 37 22 37912256 37912256 + Silent SNP T T C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD11 84433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 2953040 2953040 + Missense_Mutation SNP C C G rs141751925 by1000genomes;alternate_allele TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD11 84433 broad.mit.edu;ucsc.edu 37 7 2946320 2946320 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CARD11 84433 broad.mit.edu;ucsc.edu 37 7 2954892 2954892 + Missense_Mutation SNP G C C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CARD11 84433 hgsc.bcm.edu 37 7 2949758 2949758 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD11 84433 hgsc.bcm.edu 37 7 2949760 2949760 + Silent SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD11 84433 hgsc.bcm.edu;ucsc.edu 37 7 2951854 2951854 + Silent SNP G G A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD17 440068 hgsc.bcm.edu;ucsc.edu 37 11 104971442 104971442 + Silent SNP G G A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD17 440068 hgsc.bcm.edu;ucsc.edu 37 11 104971490 104971490 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD6 84674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40843666 40843666 + Silent SNP T T G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD6 84674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40843790 40843790 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD6 84674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40852478 40852478 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD6 84674 hgsc.bcm.edu;ucsc.edu 37 5 40854473 40854475 + In_Frame_Del DEL GTC GTC - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GTC GTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD8 22900 hgsc.bcm.edu 37 19 48715114 48715114 + Silent SNP C C A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD8 22900 hgsc.bcm.edu 37 19 48735017 48735018 + Frame_Shift_Ins INS - - TT novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARD9 64170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139266450 139266450 + Silent SNP G G C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARD9 64170 broad.mit.edu;ucsc.edu 37 9 139262211 139262211 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CARKD 55739 broad.mit.edu 37 13 111291261 111291261 + 3'UTR DEL T - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CARKD 55739 hgsc.bcm.edu 37 13 111287086 111287086 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARNS1 57571 broad.mit.edu 37 11 67191044 67191044 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CARS2 79587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111335435 111335435 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARS2 79587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111340142 111340142 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARS 833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3039892 3039892 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARS 833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3050597 3050597 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CARS 833 hgsc.bcm.edu 37 11 3022346 3022346 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CARS 833 hgsc.bcm.edu 37 11 3028150 3028150 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASC1 55259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 25264775 25264775 + Silent SNP A A T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASC1 55259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 25347862 25347862 + Silent SNP G G C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASC3 22794 broad.mit.edu 37 17 38296626 38296627 + 5'UTR DEL AA - - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASC3 22794 broad.mit.edu 37 17 38296626 38296627 + 5'UTR INS - ACAC ACAC rs146433128 unknown;alternate_allele TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASC3 22794 broad.mit.edu 37 17 38323195 38323195 + Intron DEL T - - novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASC5 57082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40949238 40949238 + Splice_Site SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASC5 57082 hgsc.bcm.edu 37 15 40937258 40937258 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASD1 64921 broad.mit.edu 37 7 94185226 94185226 + 3'UTR SNP A C C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASD1 64921 hgsc.bcm.edu;ucsc.edu 37 7 94163037 94163037 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASK 8573 broad.mit.edu 37 X 41448933 41448933 + Intron SNP T C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASK 8573 hgsc.bcm.edu;ucsc.edu 37 X 41428920 41428920 + Splice_Site SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASKIN1 57524 broad.mit.edu 37 16 2230531 2230532 + Frame_Shift_Ins INS - G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASKIN1 57524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2233883 2233883 + Silent SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASKIN1 57524 hgsc.bcm.edu 37 16 2236740 2236740 + Missense_Mutation SNP G G A rs141907746 unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASKIN2 57513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73500959 73500959 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP10 843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202050621 202050621 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP10 843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202060612 202060612 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP10 843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202082403 202082403 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP14 23581 broad.mit.edu 37 19 15164766 15164766 + Nonsense_Mutation SNP G T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASP1 834 broad.mit.edu;hgsc.bcm.edu 37 11 104897592 104897592 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP2 835 broad.mit.edu;ucsc.edu 37 7 143000899 143000899 + Missense_Mutation SNP C A A rs145619760 unknown;alternate_allele TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASP4 837 hgsc.bcm.edu 37 11 104839273 104839273 + Intron SNP T T G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASP5 838 hgsc.bcm.edu 37 11 104879687 104879687 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP5 838 hgsc.bcm.edu 37 11 104879687 104879687 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP5 838 hgsc.bcm.edu;ucsc.edu 37 11 104878041 104878041 + Frame_Shift_Del DEL T T - rs112680102 unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASP6 839 broad.mit.edu;ucsc.edu 37 4 110610481 110610484 + 3'UTR DEL ATTA - - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 ATTA ATTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASP7 840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115489084 115489084 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP8 841 broad.mit.edu 37 2 202122823 202122823 + Intron SNP T A A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASP8AP2 9994 broad.mit.edu 37 6 90573113 90573113 + Nonsense_Mutation SNP T A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASP8AP2 9994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90572531 90572531 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP8AP2 9994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90572532 90572532 + Silent SNP T T C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP8AP2 9994 hgsc.bcm.edu;ucsc.edu 37 6 90573431 90573432 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP8AP2 9994 hgsc.bcm.edu;ucsc.edu 37 6 90577024 90577035 + In_Frame_Del DEL AAGACTCCAGAG AAGACTCCAGAG - novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 AAGACTCCAGAG AAGACTCCAGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASP9 842 broad.mit.edu 37 1 15819331 15819331 + 3'UTR SNP G A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASQ1 844 broad.mit.edu 37 1 160160522 160160522 + 5'UTR SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASQ1 844 broad.mit.edu 37 1 160171310 160171310 + 3'UTR SNP A G G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASQ1 844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160167357 160167357 + Splice_Site SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASQ1 844 hgsc.bcm.edu;ucsc.edu 37 1 160167358 160167358 + Splice_Site SNP G G C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CASQ2 845 broad.mit.edu 37 1 116311366 116311367 + 5'UTR INS - CACACACA CACACACA rs71755438 unknown;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASQ2 845 broad.mit.edu 37 1 116311367 116311368 + 5'UTR DEL CA - - rs71755438 unknown;alternate_allele TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASQ2 845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 116243998 116243998 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASQ2 845 hgsc.bcm.edu;ucsc.edu 37 1 116243990 116243991 + Frame_Shift_Ins INS - - CA novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASR 846 broad.mit.edu;hgsc.bcm.edu 37 3 122003164 122003164 + Missense_Mutation SNP T T A rs104893701 bycluster;alternate_allele TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASR 846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122002936 122002936 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASR 846 hgsc.bcm.edu;ucsc.edu 37 3 121980855 121980855 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAST 831 broad.mit.edu 37 5 96109662 96109663 + 3'UTR INS - C C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAST 831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96103643 96103643 + Silent SNP T T C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAST 831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96103644 96103644 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASZ1 54897 broad.mit.edu 37 1 10699617 10699618 + Frame_Shift_Ins INS - AA AA novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASZ1 54897 broad.mit.edu 37 1 10711096 10711097 + Frame_Shift_Ins INS - G G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CASZ1 54897 hgsc.bcm.edu 37 1 10718609 10718610 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CASZ1 54897 hgsc.bcm.edu 37 1 10725193 10725193 + Missense_Mutation SNP G G A rs116460699 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CAT 847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 34478280 34478280 + Silent SNP T T C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAT 847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 34482847 34482847 + Missense_Mutation SNP A A G rs148712764 by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAT 847 hgsc.bcm.edu;ucsc.edu 37 11 34489943 34489946 + Frame_Shift_Del DEL GTGA GTGA - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 GTGA GTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CATSPER1 117144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65792685 65792685 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CATSPER1 117144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65793079 65793079 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CATSPER2 117155 hgsc.bcm.edu 37 15 43940130 43940130 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPER3 347732 broad.mit.edu 37 5 134303651 134303651 + 5'UTR SNP A G G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CATSPER3 347732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134344575 134344575 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CATSPER4 378807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26517881 26517881 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CATSPER4 378807 broad.mit.edu;ucsc.edu 37 1 26524568 26524568 + Silent SNP G A A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CATSPER4 378807 hgsc.bcm.edu 37 1 26527919 26527919 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPER4 378807 hgsc.bcm.edu 37 1 26527919 26527919 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPER4 378807 hgsc.bcm.edu 37 1 26527920 26527920 + Silent SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPER4 378807 hgsc.bcm.edu;ucsc.edu 37 1 26520358 26520358 + Silent SNP T T C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPERB 79820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 92054360 92054360 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CATSPERB 79820 hgsc.bcm.edu 37 14 92074657 92074657 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPERB 79820 hgsc.bcm.edu;ucsc.edu 37 14 92126245 92126245 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPERB 79820 hgsc.bcm.edu;ucsc.edu 37 14 92171025 92171025 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CATSPERG 57828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38853135 38853135 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CAV1 857 broad.mit.edu 37 7 116164929 116164929 + 5'UTR SNP A T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CAV3 859 broad.mit.edu;ucsc.edu 37 3 8787538 8787538 + Silent SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBARA1 0 broad.mit.edu 37 10 74127330 74127330 + 3'UTR DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBARA1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74128087 74128087 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBARA1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74326491 74326491 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBFA2T2 9139 broad.mit.edu 37 20 32198915 32198915 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBFA2T3 863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88945789 88945789 + Silent SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBFA2T3 863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88958664 88958664 + Silent SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBFB 865 broad.mit.edu 37 16 67132960 67132960 + 3'UTR DEL C - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBL 867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119168096 119168096 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CBLB 868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 105389115 105389115 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBLB 868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 105400639 105400639 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBLC 23624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45284600 45284600 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBLL1 79872 hgsc.bcm.edu 37 7 107393904 107393904 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CBLL1 79872 hgsc.bcm.edu 37 7 107395874 107395874 + Silent SNP G G A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CBLL1 79872 hgsc.bcm.edu;ucsc.edu 37 7 107393906 107393906 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CBLN1 869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49313372 49313372 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBR1 873 broad.mit.edu 37 21 37444758 37444758 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBR1 873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37445149 37445149 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBR3 874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37518699 37518699 + Silent SNP C C A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBR4 84869 broad.mit.edu 37 4 169911113 169911113 + 3'UTR DEL A - - novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBR4 84869 broad.mit.edu 37 4 169923170 169923170 + Intron SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBR4 84869 broad.mit.edu 37 4 169923170 169923170 + Intron SNP C T T novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBR4 84869 broad.mit.edu 37 4 169931341 169931341 + 5'UTR DEL G - - rs67009551 unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBS 875 broad.mit.edu 37 21 44473883 44473887 + 3'UTR DEL GCCAG - - rs71872941 bycluster;by1000genomes TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 GCCAG GCCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBS 875 broad.mit.edu 37 21 44476000 44476001 + Intron INS - T T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBWD1 55871 broad.mit.edu 37 9 121206 121206 + 3'UTR SNP A G G rs11215 unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBWD3 445571 broad.mit.edu 37 9 70490099 70490099 + 5'UTR SNP G T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBWD3 445571 broad.mit.edu 37 9 70871861 70871861 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBWD3 445571 hgsc.bcm.edu 37 9 70863777 70863777 + Missense_Mutation SNP G G T rs75387834 unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CBX1 10951 broad.mit.edu;hgsc.bcm.edu 37 17 46148933 46148933 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBX3 11335 broad.mit.edu 37 7 26251843 26251843 + 3'UTR SNP C T T rs9768418 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBX3 11335 broad.mit.edu 37 7 26252044 26252045 + 3'UTR DEL CC - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBX3 11335 broad.mit.edu 37 7 26252044 26252045 + 3'UTR DEL CC - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBX3 11335 hgsc.bcm.edu 37 7 26245986 26245986 + Splice_Site SNP A A T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBX5 23468 broad.mit.edu 37 12 54631608 54631608 + 3'UTR DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBX6 23466 hgsc.bcm.edu 37 22 39262466 39262466 + Silent SNP C C T rs114863931 byfrequency;by1000genomes;alternate_allele TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CBX6 23466 hgsc.bcm.edu;ucsc.edu 37 22 39267730 39267730 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CBX8 57332 broad.mit.edu 37 17 77768311 77768311 + 3'UTR SNP T G G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CBX8 57332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 77768913 77768913 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CC2D1A 54862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14034594 14034594 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CC2D1B 200014 hgsc.bcm.edu 37 1 52824974 52824975 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CC2D1B 200014 hgsc.bcm.edu;ucsc.edu 37 1 52821521 52821521 + Splice_Region SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CC2D2A 57545 broad.mit.edu;hgsc.bcm.edu 37 4 15511767 15511767 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CC2D2A 57545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 15556749 15556749 + Silent SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CC2D2A 57545 hgsc.bcm.edu 37 4 15477609 15477609 + Intron SNP T T G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CC2D2A 57545 hgsc.bcm.edu;ucsc.edu 37 4 15538634 15538634 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CC2D2B 387707 broad.mit.edu 37 10 97779282 97779282 + Intron SNP T C C rs138261083 by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CC2D2B 387707 broad.mit.edu 37 10 97779664 97779664 + Intron SNP T G G novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CC2D2B 387707 hgsc.bcm.edu;ucsc.edu 37 10 97791691 97791691 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCAR1 55749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70507264 70507264 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCAR1 55749 broad.mit.edu;ucsc.edu 37 10 70502139 70502139 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCAR1 55749 hgsc.bcm.edu;ucsc.edu 37 10 70520853 70520857 + Frame_Shift_Del DEL TAAAG TAAAG - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 TAAAG TAAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBE1 147372 broad.mit.edu;hgsc.bcm.edu 37 18 57103088 57103088 + 3'UTR SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBE1 147372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57103282 57103282 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBE1 147372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57136800 57136800 + Missense_Mutation SNP C C T rs121908251 unknown;alternate_allele TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBE1 147372 hgsc.bcm.edu;ucsc.edu 37 18 57147435 57147435 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBL1 883 hgsc.bcm.edu;ucsc.edu 37 9 131596110 131596110 + Intron SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBL2 56267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89454019 89454019 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCBL2 56267 hgsc.bcm.edu 37 1 89434445 89434445 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCBL2 56267 hgsc.bcm.edu;ucsc.edu 37 1 89430535 89430535 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCBP2 1238 hgsc.bcm.edu;ucsc.edu 37 3 42906057 42906057 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC102A 92922 broad.mit.edu 37 16 57552045 57552047 + In_Frame_Del DEL GCC - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC104 112942 broad.mit.edu;hgsc.bcm.edu 37 2 55772134 55772134 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC105 126402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15132495 15132495 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC105 126402 hgsc.bcm.edu 37 19 15131445 15131445 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC107 203260 hgsc.bcm.edu 37 9 35660625 35660625 + Silent SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC108 255101 broad.mit.edu 37 2 219894592 219894592 + Intron SNP A G G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC108 255101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219888914 219888914 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC108 255101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219900064 219900064 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC108 255101 broad.mit.edu;ucsc.edu 37 2 219886632 219886632 + Silent SNP G C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC108 255101 hgsc.bcm.edu 37 2 219875351 219875351 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC108 255101 hgsc.bcm.edu 37 2 219892423 219892423 + Silent SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC108 255101 hgsc.bcm.edu 37 2 219902731 219902731 + Intron SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC108 255101 hgsc.bcm.edu 37 2 219902731 219902731 + Intron SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC108 255101 hgsc.bcm.edu;ucsc.edu 37 2 219875305 219875305 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC109A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74619047 74619047 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC109A 0 hgsc.bcm.edu;ucsc.edu 37 10 74645575 74645578 + Frame_Shift_Del DEL GATT GATT - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 GATT GATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC109B 55013 broad.mit.edu 37 4 110603989 110603989 + Intron SNP A G G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC110 256309 hgsc.bcm.edu 37 4 186380243 186380243 + Missense_Mutation SNP A A C rs59319722 bycluster;byfrequency;by1000genomes TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC111 201973 hgsc.bcm.edu 37 4 185599493 185599493 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC111 201973 hgsc.bcm.edu;ucsc.edu 37 4 185599419 185599419 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC112 153733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 114620509 114620509 + Missense_Mutation SNP G G A rs187304678 by1000genomes TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC11 220136 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47792751 47792751 + Silent SNP G G A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC11 220136 hgsc.bcm.edu;ucsc.edu 37 18 47753857 47753857 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC113 29070 broad.mit.edu 37 16 58314754 58314754 + 3'UTR DEL T - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC114 93233 hgsc.bcm.edu 37 19 48809521 48809521 + Silent SNP G G A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC114 93233 hgsc.bcm.edu 37 19 48821663 48821663 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC116 164592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21989453 21989453 + Silent SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC116 164592 hgsc.bcm.edu;ucsc.edu 37 22 21990822 21990822 + Silent SNP C C T rs115937546 bycluster;byfrequency;by1000genomes TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC120 90060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48923285 48923285 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC120 90060 hgsc.bcm.edu 37 X 48919829 48919829 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC120 90060 hgsc.bcm.edu 37 X 48919829 48919829 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC120 90060 hgsc.bcm.edu 37 X 48919830 48919830 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC123 0 hgsc.bcm.edu 37 19 33444588 33444588 + Missense_Mutation SNP T T G rs73035551 bycluster TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC123 0 hgsc.bcm.edu 37 19 33444682 33444682 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC123 0 hgsc.bcm.edu;ucsc.edu 37 19 33439254 33439254 + Silent SNP C C A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC124 115098 broad.mit.edu 37 19 18054506 18054506 + Silent SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC125 202243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 68581285 68581285 + Nonsense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC125 202243 hgsc.bcm.edu;ucsc.edu 37 5 68607025 68607025 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC126 90693 broad.mit.edu 37 7 23650854 23650854 + 5'UTR SNP C T T rs182881031 by1000genomes;alternate_allele TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC126 90693 broad.mit.edu;ucsc.edu 37 7 23650959 23650959 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC127 133957 hgsc.bcm.edu;ucsc.edu 37 5 205842 205847 + In_Frame_Del DEL TTCTTT TTCTTT - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TTCTTT TTCTTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC129 223075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 31617614 31617614 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC129 223075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 31682989 31682989 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC129 223075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 31683360 31683360 + Silent SNP C C A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC13 152206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42781196 42781196 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC132 55610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92921015 92921015 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC132 55610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92970752 92970752 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC132 55610 hgsc.bcm.edu 37 7 92887727 92887727 + Intron SNP T T G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC136 64753 broad.mit.edu 37 7 128432343 128432343 + 5'UTR SNP C A A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC136 64753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128434749 128434749 + Silent SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC136 64753 broad.mit.edu;ucsc.edu 37 7 128457873 128457873 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC142 84865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74709054 74709054 + Missense_Mutation SNP T T G rs138040614 unknown;alternate_allele TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC144A 9720 broad.mit.edu 37 17 16596346 16596346 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC144A 9720 broad.mit.edu 37 17 16664760 16664760 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC144A 9720 hgsc.bcm.edu 37 17 16638643 16638644 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC144B 284047 hgsc.bcm.edu;ucsc.edu 37 17 18486814 18486815 + Frame_Shift_Ins INS - - T rs71208410 unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC144B 284047 hgsc.bcm.edu;ucsc.edu 37 17 18486814 18486815 + Frame_Shift_Ins INS - - T rs71208410 unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC144C 348254 broad.mit.edu 37 17 20224931 20224931 + RNA SNP T C C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC144C 348254 broad.mit.edu 37 17 20241534 20241534 + RNA SNP G C C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC144NL 339184 broad.mit.edu 37 17 20768623 20768623 + 3'UTR SNP A G G rs35533831 unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC144NL 339184 hgsc.bcm.edu 37 17 20768763 20768763 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC144NL 339184 hgsc.bcm.edu 37 17 20769899 20769899 + Nonsense_Mutation SNP G G T rs79930314 unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC14 64770 broad.mit.edu 37 3 123675113 123675113 + Intron SNP G A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC14 64770 hgsc.bcm.edu;ucsc.edu 37 3 123663774 123663774 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC146 57639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 76891575 76891575 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC146 57639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 76912017 76912017 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC146 57639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 76916144 76916144 + Silent SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC147 159686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 106209950 106209950 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC148 130940 broad.mit.edu;ucsc.edu 37 2 159196824 159196824 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC148 130940 broad.mit.edu;ucsc.edu 37 2 159312934 159312934 + Silent SNP A T T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC148 130940 hgsc.bcm.edu;ucsc.edu 37 2 159033038 159033038 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC149 91050 broad.mit.edu 37 4 24832922 24832922 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC149 91050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24810062 24810062 + Silent SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC150 284992 broad.mit.edu 37 2 197531635 197531635 + Intron SNP C A A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC150 284992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197511118 197511118 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC150 284992 hgsc.bcm.edu;ucsc.edu 37 2 197530388 197530388 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC150 284992 hgsc.bcm.edu;ucsc.edu 37 2 197534629 197534629 + Intron SNP G G T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC150 284992 hgsc.bcm.edu;ucsc.edu 37 2 197594682 197594683 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC151 115948 hgsc.bcm.edu 37 19 11533441 11533441 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC152 100129792 broad.mit.edu 37 5 42800055 42800056 + 3'UTR INS - A A rs34239256 bycluster;by1000genomes TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC152 100129792 broad.mit.edu 37 5 42800579 42800579 + 3'UTR DEL A - - rs71793261 unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC154 645811 hgsc.bcm.edu 37 16 1484528 1484528 + Missense_Mutation SNP G G A rs61744665 bycluster;byfrequency;by1000genomes TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC154 645811 hgsc.bcm.edu 37 16 1486533 1486533 + Intron SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC155 147872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49897747 49897747 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC155 147872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49912528 49912528 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC155 147872 hgsc.bcm.edu 37 19 49913125 49913125 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC155 147872 hgsc.bcm.edu;ucsc.edu 37 19 49910568 49910568 + Intron SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC157 550631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30766353 30766353 + Silent SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC157 550631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30766638 30766638 + Silent SNP C C G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC15 80071 hgsc.bcm.edu;ucsc.edu 37 11 124824706 124824706 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC15 80071 hgsc.bcm.edu;ucsc.edu 37 11 124910539 124910539 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC158 339965 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77292666 77292666 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC160 347475 broad.mit.edu;hgsc.bcm.edu 37 X 133379666 133379666 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC160 347475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133379666 133379666 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC160 347475 hgsc.bcm.edu;ucsc.edu 37 X 133378953 133378953 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC162 0 hgsc.bcm.edu 37 6 109667417 109667417 + Intron SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC163P 126661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45962262 45962262 + RNA SNP G G C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC17 149483 broad.mit.edu 37 1 46086385 46086385 + Intron SNP G C C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC17 149483 broad.mit.edu;ucsc.edu 37 1 46087629 46087629 + Frame_Shift_Del DEL G - - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC17 149483 hgsc.bcm.edu 37 1 46086449 46086449 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC18 343099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93649561 93649561 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC18 343099 hgsc.bcm.edu 37 1 93672722 93672722 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC18 343099 hgsc.bcm.edu;ucsc.edu 37 1 93657661 93657661 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC18 343099 hgsc.bcm.edu;ucsc.edu 37 1 93672797 93672798 + Frame_Shift_Ins INS - - A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC21 0 hgsc.bcm.edu;ucsc.edu 37 1 26597500 26597500 + Intron SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC22 28952 broad.mit.edu;hgsc.bcm.edu 37 X 49105114 49105114 + Silent SNP G G A rs138555929 byfrequency TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC24 149473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44461642 44461642 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC25 55246 broad.mit.edu 37 8 27592873 27592874 + 3'UTR INS - T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC25 55246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27605739 27605739 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC25 55246 hgsc.bcm.edu;ucsc.edu 37 8 27622729 27622729 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC27 148870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3669160 3669160 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC28B 79140 hgsc.bcm.edu 37 1 32669934 32669936 + In_Frame_Del DEL AGA AGA - novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC30 728621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43055004 43055004 + Silent SNP T T C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC30 728621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43111913 43111913 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC33 80125 broad.mit.edu 37 15 74628156 74628156 + Intron DEL C - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC33 80125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 74565206 74565206 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC33 80125 broad.mit.edu;ucsc.edu 37 15 74622668 74622668 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC33 80125 hgsc.bcm.edu;ucsc.edu 37 15 74625025 74625025 + Missense_Mutation SNP C C T rs146131430 unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC36 339834 broad.mit.edu 37 3 49282622 49282622 + Intron DEL T - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC36 339834 hgsc.bcm.edu;ucsc.edu 37 3 49293580 49293580 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC37 348807 broad.mit.edu;hgsc.bcm.edu 37 3 126142411 126142411 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC38 120935 hgsc.bcm.edu 37 12 96330312 96330312 + Intron SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC3 83643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12940511 12940511 + Missense_Mutation SNP G G T rs150259960 unknown;alternate_allele TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC39 339829 hgsc.bcm.edu;ucsc.edu 37 3 180349355 180349355 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC39(dist=162077) 0 hgsc.bcm.edu;ucsc.edu 37 3 180559360 180559360 + IGR SNP T T C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC39(dist=167518) 0 hgsc.bcm.edu;ucsc.edu 37 3 180564801 180564801 + IGR SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC40 55036 broad.mit.edu 37 17 78039368 78039368 + Missense_Mutation SNP C G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC40 55036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78013722 78013722 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC40 55036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78058619 78058619 + Silent SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC40 55036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78059827 78059827 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC41 51134 broad.mit.edu 37 12 94702283 94702283 + 3'UTR DEL A - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC41 51134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94772632 94772632 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC41 51134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94772668 94772668 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC42 146849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8638483 8638483 + Missense_Mutation SNP C C A rs147736220 byfrequency;alternate_allele TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC42 146849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8647475 8647475 + Silent SNP C C T rs149123321 unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC45 0 broad.mit.edu 37 17 62530886 62530888 + Intron DEL AAG - - rs145444747 unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC45 0 broad.mit.edu;hgsc.bcm.edu 37 17 62512942 62512942 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62506316 62506316 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62512882 62512882 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC45 0 hgsc.bcm.edu;ucsc.edu 37 17 62506379 62506379 + Silent SNP C C A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64059172 64059172 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC47 57003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61829787 61829787 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC47 57003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61841511 61841511 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC47 57003 hgsc.bcm.edu 37 17 61838603 61838603 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC48 0 broad.mit.edu 37 3 128758917 128758917 + 3'UTR DEL T - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC48 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128753037 128753037 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC48 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128757716 128757716 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC48 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128758645 128758645 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC50 152137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 191087771 191087771 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC50 152137 hgsc.bcm.edu;ucsc.edu 37 3 191109511 191109511 + Intron SNP T T C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC51 79714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48474087 48474087 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC51 79714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48474088 48474088 + Silent SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC51 79714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48475152 48475152 + Silent SNP A A G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC52 0 broad.mit.edu 37 3 113218217 113218217 + Intron DEL T - - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC53 51019 hgsc.bcm.edu;ucsc.edu 37 12 102433684 102433684 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC54 84692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 107097368 107097368 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC54 84692 hgsc.bcm.edu;ucsc.edu 37 3 107096611 107096612 + Frame_Shift_Ins INS - - TA novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC57 284001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80156290 80156290 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC57 284001 hgsc.bcm.edu 37 17 80130525 80130525 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC58 131076 hgsc.bcm.edu 37 3 122081798 122081798 + Intron SNP C C G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC59 29080 broad.mit.edu;hgsc.bcm.edu 37 12 82746875 82746875 + RNA SNP T T A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC59 29080 hgsc.bcm.edu;ucsc.edu 37 12 82752142 82752143 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC60 160777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 119909965 119909965 + Silent SNP T T C rs139079166 bycluster;byfrequency;by1000genomes TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC61 729440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46519960 46519960 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC61 729440 broad.mit.edu;ucsc.edu 37 19 46511489 46511489 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC62 84660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123282648 123282648 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC62 84660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123307924 123307924 + Silent SNP C C A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC62 84660 hgsc.bcm.edu 37 12 123285867 123285867 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC63 160762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111290728 111290728 + 5'UTR SNP C C A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC63 160762 broad.mit.edu;ucsc.edu 37 12 111290715 111290715 + 5'UTR SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC64B 146439 hgsc.bcm.edu 37 16 3079294 3079294 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC65 85478 hgsc.bcm.edu;ucsc.edu 37 12 49312242 49312242 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC67 159989 broad.mit.edu 37 11 93170919 93170919 + 3'UTR SNP A C C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC67 159989 hgsc.bcm.edu 37 11 93170918 93170918 + 3'UTR SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC6 8030 broad.mit.edu 37 10 61552409 61552409 + 3'UTR DEL C - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC68 80323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 52575020 52575020 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC68 80323 hgsc.bcm.edu;ucsc.edu 37 18 52610015 52610015 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC71 64925 hgsc.bcm.edu;ucsc.edu 37 3 49200640 49200641 + In_Frame_Ins INS - - TTGGCC novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC72 0 hgsc.bcm.edu 37 3 48485282 48485282 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC73 493860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32635626 32635626 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC73 493860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32636393 32636393 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC73 493860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32637578 32637578 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC73 493860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32657351 32657351 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC73 493860 broad.mit.edu;ucsc.edu 37 11 32697453 32697453 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC73 493860 hgsc.bcm.edu 37 11 32722320 32722320 + Intron SNP A A T rs11031943 bycluster;by1000genomes TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC74A 90557 broad.mit.edu;hgsc.bcm.edu 37 2 132285695 132285695 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC74A 90557 hgsc.bcm.edu 37 2 132288327 132288327 + Silent SNP C C T rs138376646 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC74A 90557 hgsc.bcm.edu 37 2 132288362 132288362 + Missense_Mutation SNP T T C rs2599971 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC74A 90557 hgsc.bcm.edu 37 2 132289349 132289349 + Silent SNP A A G rs2258687 bycluster;byfrequency TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC74B 91409 hgsc.bcm.edu 37 2 130897218 130897218 + Silent SNP T T C rs13006246 bycluster;byfrequency;by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC74B 91409 hgsc.bcm.edu 37 2 130897675 130897675 + Intron SNP A A T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC75 253635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37321281 37321281 + Silent SNP A A G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC75 253635 broad.mit.edu;ucsc.edu 37 2 37315582 37315582 + Nonsense_Mutation SNP C T T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC75 253635 broad.mit.edu;ucsc.edu 37 2 37319307 37319307 + Splice_Site SNP G C C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC76 0 broad.mit.edu 37 1 100614443 100614443 + 3'UTR DEL A - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC76 0 broad.mit.edu 37 1 100614877 100614877 + 3'UTR DEL C - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC76 0 broad.mit.edu 37 1 100614883 100614883 + 3'UTR DEL T - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC76 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100606486 100606486 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC76 0 hgsc.bcm.edu;ucsc.edu 37 1 100613814 100613814 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC77 84318 broad.mit.edu;ucsc.edu 37 12 518533 518533 + Splice_Site DEL G - - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC78 124093 broad.mit.edu 37 16 773292 773292 + Intron DEL C - - rs141938139 by1000genomes TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC78 124093 broad.mit.edu 37 16 773292 773292 + Intron DEL C - - rs141938139 by1000genomes TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC78 124093 broad.mit.edu 37 16 773319 773320 + Intron INS - A A rs60065133 unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC78 124093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 775560 775560 + Silent SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC80 151887 broad.mit.edu;ucsc.edu 37 3 112357811 112357811 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC80 151887 hgsc.bcm.edu;ucsc.edu 37 3 112357355 112357356 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC80 151887 hgsc.bcm.edu;ucsc.edu 37 3 112357865 112357865 + Silent SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC80 151887 hgsc.bcm.edu;ucsc.edu 37 3 112357946 112357946 + Silent SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC81 60494 broad.mit.edu;hgsc.bcm.edu 37 11 86106349 86106349 + Intron SNP T T C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC81 60494 broad.mit.edu;ucsc.edu 37 11 86097128 86097128 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC81 60494 broad.mit.edu;ucsc.edu 37 11 86097136 86097136 + Silent SNP G T T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC81 60494 broad.mit.edu;ucsc.edu 37 11 86097137 86097137 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC82 79780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 96098194 96098194 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC82 79780 broad.mit.edu;ucsc.edu 37 11 96092231 96092231 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC82 79780 hgsc.bcm.edu 37 11 96104275 96104275 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC82 79780 hgsc.bcm.edu 37 11 96104275 96104275 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC83 220047 hgsc.bcm.edu;ucsc.edu 37 11 85630410 85630410 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC84 338657 broad.mit.edu 37 11 118886008 118886008 + Intron SNP A C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC85A 114800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 56419911 56419911 + Silent SNP C C T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC86 79080 hgsc.bcm.edu 37 11 60610042 60610043 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC87 55231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66359599 66359599 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC87 55231 hgsc.bcm.edu 37 11 66359725 66359725 + Silent SNP G G A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC8 83987 broad.mit.edu 37 19 46916341 46916342 + 5'UTR INS - A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC8 83987 hgsc.bcm.edu 37 19 46914620 46914620 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88A 55704 broad.mit.edu 37 2 55523818 55523818 + Intron SNP C T T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC88A 55704 broad.mit.edu 37 2 55562094 55562094 + Missense_Mutation SNP T G G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC88A 55704 broad.mit.edu;hgsc.bcm.edu 37 2 55522699 55522699 + Intron SNP A A G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88A 55704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 55570817 55570817 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88B 283234 broad.mit.edu 37 11 64124415 64124415 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC88B 283234 broad.mit.edu 37 11 64124422 64124422 + Intron SNP T G G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC88B 283234 broad.mit.edu;hgsc.bcm.edu 37 11 64123150 64123150 + Intron SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88B 283234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64108611 64108611 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88B 283234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64111336 64111336 + Silent SNP C C A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88B 283234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64111946 64111946 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC88B 283234 hgsc.bcm.edu;ucsc.edu 37 11 64121227 64121227 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC88C 440193 broad.mit.edu 37 14 91845972 91845972 + Intron DEL G - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC88C 440193 broad.mit.edu;hgsc.bcm.edu 37 14 91755525 91755525 + Silent SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC89 220388 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 85396828 85396828 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC89 220388 hgsc.bcm.edu;ucsc.edu 37 11 85396614 85396614 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC91 55297 broad.mit.edu;ucsc.edu 37 12 28636996 28636996 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC9 26093 broad.mit.edu 37 19 47763878 47763878 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC9 26093 broad.mit.edu 37 19 47774990 47775003 + 3'UTR DEL GCGCGCGCGCGCGC - - rs145069938 by1000genomes;alternate_allele TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 GCGCGCGCGCGCGC GCGCGCGCGCGCGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC9 26093 hgsc.bcm.edu 37 19 47774666 47774668 + In_Frame_Del DEL GAG GAG - rs138370983 bycluster;by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC93 54520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 118766138 118766138 + Silent SNP A A G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC93 54520 hgsc.bcm.edu;ucsc.edu 37 2 118693136 118693136 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC93 54520 hgsc.bcm.edu;ucsc.edu 37 2 118732771 118732771 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC93 54520 hgsc.bcm.edu;ucsc.edu 37 2 118732797 118732797 + Silent SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC96 257236 broad.mit.edu 37 4 7042970 7042970 + 3'UTR SNP G A A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC97 90324 broad.mit.edu 37 19 41826334 41826334 + Silent SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCDC97 90324 hgsc.bcm.edu 37 19 41822486 41822486 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCDC99 0 broad.mit.edu;hgsc.bcm.edu 37 5 169026150 169026150 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCDC99 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169028336 169028336 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCHCR1 54535 broad.mit.edu 37 6 31112350 31112350 + Intron SNP C A A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCHCR1 54535 broad.mit.edu 37 6 31112818 31112826 + In_Frame_Del DEL CCACCTTGC - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 CCACCTTGC CCACCTTGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCHCR1 54535 broad.mit.edu;hgsc.bcm.edu 37 6 31111166 31111166 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCHCR1 54535 broad.mit.edu;hgsc.bcm.edu 37 6 31122472 31122472 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCHCR1 54535 hgsc.bcm.edu 37 6 31113524 31113525 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCIN 881 hgsc.bcm.edu 37 9 36170277 36170277 + Missense_Mutation SNP C C T rs140883913 bycluster;byfrequency;by1000genomes TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCK 885 broad.mit.edu 37 3 42304784 42304784 + Intron SNP A G G rs1868522 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCKAR 886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 26487295 26487295 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCKAR 886 hgsc.bcm.edu;ucsc.edu 37 4 26483745 26483745 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCKBR 887 broad.mit.edu 37 11 6292136 6292136 + Intron SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCKBR 887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6290923 6290923 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCKBR 887 hgsc.bcm.edu 37 11 6292261 6292261 + Missense_Mutation SNP C C G rs144317623 unknown;alternate_allele TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCL16 6360 broad.mit.edu 37 17 34308475 34308475 + 5'UTR SNP C T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCL22 6367 broad.mit.edu 37 16 57397559 57397559 + 3'UTR SNP T C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCL22 6367 broad.mit.edu 37 16 57399020 57399020 + 3'UTR DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCL26 10344 hgsc.bcm.edu 37 7 75401500 75401500 + 5'UTR SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCL2 6347 hgsc.bcm.edu 37 17 32583304 32583304 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCL27 10850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34662409 34662409 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCL28 56477 broad.mit.edu 37 5 43381809 43381809 + 3'UTR SNP C A A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCL3 6348 hgsc.bcm.edu;ucsc.edu 37 17 34417377 34417377 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCM2 83605 hgsc.bcm.edu 37 7 45113122 45113122 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCM2 83605 hgsc.bcm.edu;ucsc.edu 37 7 45067353 45067353 + Missense_Mutation SNP T T G novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNA1 8900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37014312 37014312 + Silent SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNA1 8900 hgsc.bcm.edu 37 13 37012869 37012873 + Frame_Shift_Del DEL AGGTT AGGTT - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 AGGTT AGGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNA1 8900 hgsc.bcm.edu 37 13 37015358 37015358 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNA1 8900 hgsc.bcm.edu;ucsc.edu 37 13 37007258 37007258 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNA1 8900 hgsc.bcm.edu;ucsc.edu 37 13 37012826 37012826 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNB1IP1 57820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20779855 20779855 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNB2 9133 broad.mit.edu 37 15 59417125 59417125 + 3'UTR SNP T C C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59406998 59406998 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59407028 59407028 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59408907 59408907 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59409521 59409521 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59415824 59415824 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq CCNB3 85417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50053811 50053811 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNB3 85417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50054338 50054338 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNB3 85417 hgsc.bcm.edu 37 X 50052464 50052464 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID CCNB3 85417 hgsc.bcm.edu 37 X 50090718 50090718 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNB3 85417 hgsc.bcm.edu;ucsc.edu 37 X 50052672 50052672 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNB3 85417 hgsc.bcm.edu;ucsc.edu 37 X 50090767 50090767 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID CCNC 892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100009547 100009547 + Silent SNP T T A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCND2 894 broad.mit.edu 37 12 4409271 4409271 + 3'UTR DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCND2 894 broad.mit.edu 37 12 4409271 4409271 + 3'UTR DEL A - - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCND2 894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4385304 4385304 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCND2 894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4398012 4398012 + Silent SNP T T C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCND3 896 broad.mit.edu 37 6 41904610 41904610 + Intron DEL C - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCND3 896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41904303 41904303 + Silent SNP A A G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNDBP1 23582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43482264 43482264 + Silent SNP A A C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNDBP1 23582 hgsc.bcm.edu 37 15 43478362 43478362 + Silent SNP T T A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNDBP1 23582 hgsc.bcm.edu;ucsc.edu 37 15 43482567 43482567 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNDBP1 23582 hgsc.bcm.edu;ucsc.edu 37 15 43485008 43485008 + Splice_Region SNP A A T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNE1 898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 30303636 30303636 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNE1 898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 30303637 30303637 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNE2 9134 broad.mit.edu 37 8 95892737 95892737 + 3'UTR DEL T - - rs144325537 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCNF 899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2481270 2481270 + Silent SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNF 899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2503516 2503516 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNF 899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2506613 2506613 + Silent SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNF 899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2506955 2506955 + Silent SNP G G A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNG2 901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 78085544 78085544 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNH 902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 86695281 86695281 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNI 10983 broad.mit.edu;ucsc.edu 37 4 77969663 77969663 + Silent SNP G T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCNJ 54619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97810064 97810064 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNJ 54619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97816869 97816869 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNJL 79616 broad.mit.edu 37 5 159680605 159680605 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCNJL 79616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 159680467 159680467 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNK 8812 hgsc.bcm.edu 37 14 99959139 99959139 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNK 8812 hgsc.bcm.edu;ucsc.edu 37 14 99969172 99969172 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNL1 57018 broad.mit.edu 37 3 156867022 156867022 + Intron SNP A G G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCNL1 57018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156867954 156867954 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNL1 57018 hgsc.bcm.edu 37 3 156877717 156877717 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCNT1 904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49110458 49110458 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNT2 905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135711411 135711411 + Silent SNP A A G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNT2 905 hgsc.bcm.edu;ucsc.edu 37 2 135712132 135712132 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCNY 219771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 35819094 35819094 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCPG1 9236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55669238 55669238 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCR10 2826 broad.mit.edu 37 17 40831511 40831511 + 3'UTR DEL C - - novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCR5 1234 hgsc.bcm.edu 37 3 46414947 46414947 + Missense_Mutation SNP G G T rs112590754 unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCR5 1234 hgsc.bcm.edu 37 3 46414947 46414947 + Missense_Mutation SNP G G T rs112590754 unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCR5 1234 hgsc.bcm.edu 37 3 46414949 46414949 + Missense_Mutation SNP C C A rs113869679 unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCR6 1235 broad.mit.edu 37 6 167417367 167417367 + 5'UTR SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCR6 1235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 167550763 167550763 + Missense_Mutation SNP G G A rs113115632 unknown;alternate_allele TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCR9 10803 hgsc.bcm.edu 37 3 45943248 45943248 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCRN4L 25819 broad.mit.edu 37 4 139964674 139964675 + Intron INS - T T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCRN4L 25819 broad.mit.edu 37 4 139964675 139964675 + Intron DEL T - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCRN4L 25819 broad.mit.edu 37 4 139964675 139964675 + Intron DEL T - - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCRN4L 25819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 139966122 139966122 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCRN4L 25819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 139966177 139966177 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCRN4L 25819 hgsc.bcm.edu;ucsc.edu 37 4 139965861 139965861 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCRN4L 25819 hgsc.bcm.edu;ucsc.edu 37 4 139966481 139966481 + Silent SNP A A G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCS 9973 hgsc.bcm.edu 37 11 66373234 66373234 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCT2 10576 broad.mit.edu;ucsc.edu 37 12 69985846 69985846 + Silent SNP G T T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CCT4 10575 hgsc.bcm.edu 37 2 62112231 62112231 + Intron SNP G G A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCT4 10575 hgsc.bcm.edu;ucsc.edu 37 2 62104113 62104114 + Frame_Shift_Ins INS - - T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCT6B 10693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33269618 33269618 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCT7 10574 hgsc.bcm.edu 37 2 73471736 73471736 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCT8 10694 broad.mit.edu;hgsc.bcm.edu 37 21 30442596 30442596 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCT8 10694 broad.mit.edu;hgsc.bcm.edu 37 21 30442608 30442608 + Silent SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCT8L2 150160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17073177 17073177 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CCT8L2 150160 hgsc.bcm.edu 37 22 17072822 17072822 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCZ1 51622 hgsc.bcm.edu 37 7 5939957 5939957 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCZ1 51622 hgsc.bcm.edu 37 7 5944844 5944844 + Missense_Mutation SNP G G C rs62441857 unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CCZ1 51622 hgsc.bcm.edu 37 7 5944844 5944844 + Missense_Mutation SNP G G C rs62441857 unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD101 9398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 117564261 117564261 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD101 9398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 117568204 117568204 + Silent SNP C C T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD101 9398 broad.mit.edu;ucsc.edu 37 1 117561137 117561137 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD101 9398 hgsc.bcm.edu 37 1 117560837 117560837 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD109 135228 broad.mit.edu;ucsc.edu 37 6 74516670 74516670 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD109 135228 hgsc.bcm.edu 37 6 74517871 74517871 + Silent SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD109 135228 hgsc.bcm.edu;ucsc.edu 37 6 74407205 74407205 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD151 977 hgsc.bcm.edu 37 11 837500 837500 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD160 11126 broad.mit.edu 37 1 145698819 145698819 + Intron SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD163 9332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7636081 7636081 + Silent SNP C C G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD163L1 283316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7520737 7520737 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD163L1 283316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7526111 7526111 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD163L1 283316 broad.mit.edu;ucsc.edu 37 12 7527159 7527159 + Silent SNP C T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD164 8763 hgsc.bcm.edu;ucsc.edu 37 6 109695769 109695769 + Intron SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD177 57126 hgsc.bcm.edu 37 19 43857873 43857873 + Missense_Mutation SNP G G C rs45441892 bycluster;byfrequency;by1000genomes TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD177 57126 hgsc.bcm.edu 37 19 43860255 43860255 + Missense_Mutation SNP T T G rs12981771 bycluster TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD177 57126 hgsc.bcm.edu;ucsc.edu 37 19 43866359 43866359 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66478939 66478939 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66479404 66479404 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66479407 66479407 + Silent SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66479940 66479940 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66481767 66481767 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD19 930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28944420 28944420 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD1B 910 broad.mit.edu 37 1 158297960 158297960 + 3'UTR SNP C T T rs16840096 bycluster;byfrequency;by1000genomes TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD1C 911 hgsc.bcm.edu;ucsc.edu 37 1 158262061 158262061 + Silent SNP C C T rs142044323 bycluster;byfrequency;by1000genomes TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD1D 912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158152008 158152008 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD1D 912 hgsc.bcm.edu 37 1 158151840 158151840 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD1D 912 hgsc.bcm.edu;ucsc.edu 37 1 158151283 158151284 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD1D 912 hgsc.bcm.edu;ucsc.edu 37 1 158152834 158152834 + Silent SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD1E 913 broad.mit.edu 37 1 158326808 158326808 + 3'UTR SNP G A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD1E 913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158324301 158324301 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD200 4345 broad.mit.edu 37 3 112080819 112080820 + 3'UTR INS - A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD200 4345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 112054820 112054820 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD200 4345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 112059811 112059811 + Silent SNP G G C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD200R1 131450 broad.mit.edu 37 3 112693830 112693830 + 5'UTR SNP C G G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD200R1 131450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 112647851 112647851 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD200R1L 344807 hgsc.bcm.edu 37 3 112564508 112564508 + Intron SNP T T A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD207 50489 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71060814 71060814 + Silent SNP G G C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD209 30835 broad.mit.edu 37 19 7806690 7806690 + 3'UTR SNP T A A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD209 30835 broad.mit.edu 37 19 7810629 7810629 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD209 30835 broad.mit.edu;hgsc.bcm.edu 37 19 7809904 7809904 + Silent SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD209 30835 hgsc.bcm.edu 37 19 7808097 7808097 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD226 10666 broad.mit.edu 37 18 67531478 67531478 + 3'UTR SNP A G G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD22 933 broad.mit.edu 37 19 35837704 35837705 + 3'UTR DEL CA - - rs149174052 by1000genomes TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD22 933 broad.mit.edu 37 19 35837707 35837707 + 3'UTR SNP A G G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD22 933 broad.mit.edu 37 19 35837719 35837719 + 3'UTR SNP A G G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD22 933 broad.mit.edu 37 19 35837721 35837721 + 3'UTR SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD22 933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35827039 35827039 + Silent SNP G G T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD22 933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35831892 35831892 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD24 100133941 broad.mit.edu 37 Y 21154403 21154403 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD24 100133941 broad.mit.edu 37 Y 21154603 21154603 + 5'UTR SNP A C C rs79788321 unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD24 100133941 broad.mit.edu 37 Y 21154603 21154603 + 5'UTR SNP A C C rs79788321 unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD247 919 broad.mit.edu 37 1 167400667 167400675 + 3'UTR DEL ACCTGCACC - - rs34484379 bycluster;byfrequency;by1000genomes TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 ACCTGCACC ACCTGCACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD247 919 broad.mit.edu 37 1 167404444 167404444 + Intron SNP T A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD247 919 broad.mit.edu 37 1 167404498 167404498 + Intron SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD247 919 broad.mit.edu 37 1 167487734 167487734 + 5'UTR SNP G T T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD276 80381 hgsc.bcm.edu;ucsc.edu 37 15 74003467 74003467 + Splice_Region SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD27 939 broad.mit.edu 37 12 6554090 6554090 + 5'UTR DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD27 939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6554632 6554632 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD28 940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 204591400 204591400 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD2AP 23607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 47567071 47567071 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD2AP 23607 hgsc.bcm.edu 37 6 47541956 47541956 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD300C 10871 broad.mit.edu 37 17 72537599 72537599 + 3'UTR SNP G T T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD300C 10871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72537855 72537855 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300E 342510 broad.mit.edu;hgsc.bcm.edu 37 17 72610086 72610086 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300E 342510 broad.mit.edu;hgsc.bcm.edu 37 17 72613272 72613272 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300E 342510 broad.mit.edu;hgsc.bcm.edu 37 17 72613604 72613604 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300E 342510 hgsc.bcm.edu 37 17 72613554 72613554 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD300E 342510 hgsc.bcm.edu 37 17 72619748 72619748 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD300LB 124599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72522164 72522164 + Silent SNP G G T rs111972938 unknown;alternate_allele TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300LB 124599 hgsc.bcm.edu 37 17 72522083 72522083 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD300LB 124599 hgsc.bcm.edu 37 17 72527588 72527588 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD300LF 146722 hgsc.bcm.edu;ucsc.edu 37 17 72700848 72700848 + Nonsense_Mutation SNP T T A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300LG 146894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41926061 41926061 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300LG 146894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41931245 41931245 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300LG 146894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41931246 41931246 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD300LG 146894 broad.mit.edu;ucsc.edu 37 17 41931340 41931340 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD300LG 146894 hgsc.bcm.edu 37 17 41931333 41931334 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD302 9936 hgsc.bcm.edu;ucsc.edu 37 2 160628387 160628387 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD33 945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51728801 51728801 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD34 947 broad.mit.edu 37 1 208061326 208061326 + Intron SNP A C C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD34 947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 208062095 208062095 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD36 948 broad.mit.edu 37 7 79998981 79998981 + 5'UTR DEL G - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD36 948 broad.mit.edu 37 7 80303701 80303716 + 3'UTR DEL GCACAAATAAAGCACT - - rs3212018 bycluster;byfrequency;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 GCACAAATAAAGCACT GCACAAATAAAGCACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD38 952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 15818217 15818217 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD3E 916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118185183 118185183 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD3E 916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118185184 118185184 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD3EAP 10849 hgsc.bcm.edu 37 19 45912490 45912492 + In_Frame_Del DEL AAG AAG - rs145007633 bycluster;by1000genomes TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD3G 917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118221315 118221315 + Missense_Mutation SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD40 958 broad.mit.edu 37 20 44752027 44752027 + Intron SNP A T T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD40LG 959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135730560 135730560 + Silent SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD44 960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 35208449 35208449 + Splice_Site SNP T T A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD4 920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6923323 6923323 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD4 920 hgsc.bcm.edu 37 12 6909481 6909481 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD52 1043 broad.mit.edu 37 1 26646868 26646868 + 3'UTR SNP T A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD52 1043 broad.mit.edu 37 1 26646869 26646869 + 3'UTR SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD52 1043 broad.mit.edu 37 1 26646870 26646870 + 3'UTR SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD53 963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111437650 111437650 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD55 1604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207495818 207495818 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD5L 922 broad.mit.edu 37 1 157805891 157805891 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD63 967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56121064 56121064 + Silent SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD6 923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60785278 60785278 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD6 923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60785461 60785461 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD69 969 broad.mit.edu 37 12 9905949 9905954 + 3'UTR DEL CCAAGA - - rs112529498 unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 CCAAGA CCAAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD74 972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149792311 149792311 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD7 924 broad.mit.edu 37 17 80274162 80274162 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD7 924 hgsc.bcm.edu 37 17 80274142 80274168 + In_Frame_Del DEL CAGGGAGGGCAGAGGCTGCTGGCGGGT CAGGGAGGGCAGAGGCTGCTGGCGGGT - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 CAGGGAGGGCAGAGGCTGCTGGCGGGT CAGGGAGGGCAGAGGCTGCTGGCGGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD7 924 hgsc.bcm.edu 37 17 80274159 80274160 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD7 924 hgsc.bcm.edu 37 17 80274162 80274162 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD79A 973 hgsc.bcm.edu 37 19 42384963 42384963 + Silent SNP T T C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD79B 974 broad.mit.edu;hgsc.bcm.edu 37 17 62006561 62006561 + 3'UTR SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD79B 974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62009607 62009607 + Silent SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD82 3732 broad.mit.edu 37 11 44639740 44639740 + Missense_Mutation SNP A G G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD82 3732 hgsc.bcm.edu 37 11 44640632 44640632 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD83 9308 broad.mit.edu 37 6 14118278 14118278 + Nonsense_Mutation SNP C A A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD84 8832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160523749 160523749 + Silent SNP C C T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD86 942 broad.mit.edu;ucsc.edu 37 3 121825286 121825286 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD8A 925 hgsc.bcm.edu 37 2 87015623 87015623 + RNA SNP G G A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD93 22918 broad.mit.edu;hgsc.bcm.edu 37 20 23066499 23066499 + Silent SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD93 22918 hgsc.bcm.edu 37 20 23065760 23065760 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD93 22918 hgsc.bcm.edu;ucsc.edu 37 20 23066400 23066400 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD96 10225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 111343188 111343188 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD97 976 broad.mit.edu;hgsc.bcm.edu 37 19 14507236 14507236 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CD97 976 hgsc.bcm.edu 37 19 14517988 14517988 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD97 976 hgsc.bcm.edu;ucsc.edu 37 19 14512530 14512530 + Missense_Mutation SNP A A G rs145167749 byfrequency TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD9 928 broad.mit.edu 37 12 6309604 6309604 + 5'UTR SNP T G G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CD99 4267 hgsc.bcm.edu 37 X 2640714 2640714 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CD99L2 83692 hgsc.bcm.edu;ucsc.edu 37 X 149963727 149963727 + Silent SNP G G T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDA 978 broad.mit.edu 37 1 20945252 20945253 + 3'UTR INS - C C rs113839824 bycluster;by1000genomes TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDADC1 81602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 49852533 49852533 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDAN1 146059 broad.mit.edu 37 15 43016540 43016541 + 3'UTR INS - CA CA novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDAN1 146059 broad.mit.edu 37 15 43026473 43026473 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDAN1 146059 broad.mit.edu;hgsc.bcm.edu 37 15 43021465 43021465 + Silent SNP G G A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDAN1 146059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43026449 43026449 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDAN1 146059 hgsc.bcm.edu 37 15 43017754 43017754 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDAN1 146059 hgsc.bcm.edu 37 15 43023193 43023194 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDAN1 146059 hgsc.bcm.edu 37 15 43023193 43023194 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC14A 8556 broad.mit.edu 37 1 100964716 100964716 + Silent SNP A T T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100928332 100928332 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100961574 100961574 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100964518 100964518 + Silent SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100964760 100964760 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC14C 168448 broad.mit.edu 37 7 48964801 48964801 + Missense_Mutation SNP A G G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC14C 168448 broad.mit.edu 37 7 48965048 48965048 + Silent SNP C A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC16 8881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 115004884 115004884 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC16 8881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 115007656 115007656 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC20 991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43825663 43825663 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC20B 166979 broad.mit.edu;hgsc.bcm.edu 37 5 54415634 54415634 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC23 8697 broad.mit.edu 37 5 137524389 137524389 + 3'UTR DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC23 8697 broad.mit.edu 37 5 137524389 137524389 + 3'UTR DEL A - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC23 8697 broad.mit.edu 37 5 137524389 137524389 + 3'UTR DEL A - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC23 8697 broad.mit.edu 37 5 137524389 137524390 + 3'UTR DEL AA - - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC23 8697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137524758 137524758 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC23 8697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137542357 137542357 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC25A 993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48215854 48215854 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC25B 994 broad.mit.edu 37 20 3785945 3785946 + 3'UTR DEL TG - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC25C 995 broad.mit.edu 37 5 137621505 137621505 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC25C 995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137621758 137621758 + Silent SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC25C 995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137665253 137665253 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC27 996 broad.mit.edu;hgsc.bcm.edu 37 17 45219300 45219300 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC27 996 hgsc.bcm.edu 37 17 45216160 45216160 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC27 996 hgsc.bcm.edu 37 17 45234350 45234350 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC40 51362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110501714 110501714 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC42 998 broad.mit.edu;hgsc.bcm.edu 37 1 22417987 22417987 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC42BPA 8476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227192738 227192738 + Silent SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDC42BPA 8476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227213828 227213828 + Silent SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDC42BPA 8476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227216801 227216801 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC42BPA 8476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227227835 227227835 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC42BPA 8476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227288695 227288695 + Silent SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDC42BPB 9578 broad.mit.edu 37 14 103418834 103418834 + Splice_Site SNP C A A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC42BPB 9578 hgsc.bcm.edu;ucsc.edu 37 14 103416228 103416229 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC42BPG 55561 hgsc.bcm.edu 37 11 64602848 64602848 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC42EP3 10602 hgsc.bcm.edu 37 2 37873389 37873389 + Silent SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC42EP3 10602 hgsc.bcm.edu;ucsc.edu 37 2 37873389 37873389 + Silent SNP T T A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC45 8318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 19467681 19467681 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDC45 8318 broad.mit.edu 37 22 19482091 19482091 + Intron DEL C - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC5L 988 hgsc.bcm.edu 37 6 44414438 44414438 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC6 990 hgsc.bcm.edu 37 17 38456602 38456602 + Intron SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC73 79577 broad.mit.edu;ucsc.edu 37 1 193181526 193181526 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDC73 79577 hgsc.bcm.edu;ucsc.edu 37 1 193094288 193094289 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDC7 8317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 91978791 91978791 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCA2 157313 broad.mit.edu;hgsc.bcm.edu 37 8 25364407 25364407 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCA2 157313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25325823 25325823 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCA2 157313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25327412 25327412 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCA2 157313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25364809 25364809 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCA2 157313 hgsc.bcm.edu;ucsc.edu 37 8 25341648 25341648 + Silent SNP C C T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDCA3 83461 broad.mit.edu 37 12 6955786 6955787 + 3'UTR DEL CA - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDCA5 113130 hgsc.bcm.edu 37 11 64846929 64846929 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDCA7 83879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 174223477 174223477 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCA7 83879 hgsc.bcm.edu;ucsc.edu 37 2 174223501 174223501 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDCA7 83879 hgsc.bcm.edu;ucsc.edu 37 2 174224187 174224187 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCP1 64866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 45134910 45134910 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCP1 64866 hgsc.bcm.edu 37 3 45127493 45127493 + Silent SNP C C T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDCP2 200008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54605450 54605450 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCP2 200008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54610216 54610216 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDCP2 200008 hgsc.bcm.edu 37 1 54605320 54605320 + Missense_Mutation SNP G G C rs75306471 bycluster TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH10 1008 broad.mit.edu 37 5 24593660 24593660 + 5'UTR SNP G C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH10 1008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 24491776 24491776 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH11 1009 broad.mit.edu 37 16 64981435 64981435 + 3'UTR SNP C T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH11 1009 broad.mit.edu 37 16 65016300 65016300 + Intron SNP C A A rs181438398 by1000genomes;alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH11 1009 broad.mit.edu;hgsc.bcm.edu 37 16 65016234 65016234 + Intron SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH11 1009 broad.mit.edu;hgsc.bcm.edu 37 16 65038638 65038638 + Silent SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH11 1009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 64981780 64981780 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH11 1009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 64984852 64984852 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDH11 1009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 65038653 65038653 + Silent SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDH11 1009 hgsc.bcm.edu;ucsc.edu 37 16 65022084 65022084 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID CDH11(dist=44946) 0 hgsc.bcm.edu 37 16 65200865 65200865 + IGR SNP A A C rs76675326 unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH12 1010 broad.mit.edu 37 5 21751719 21751719 + 3'UTR SNP G A A rs74965569 bycluster TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH12 1010 broad.mit.edu 37 5 21751720 21751720 + 3'UTR SNP T A A rs55879862 bycluster TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH12 1010 broad.mit.edu 37 5 21751722 21751722 + 3'UTR SNP T A A rs77099217 bycluster TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH12 1010 broad.mit.edu 37 5 21751731 21751731 + 3'UTR SNP G T T rs145035915 unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH12 1010 broad.mit.edu 37 5 21751731 21751731 + 3'UTR SNP G T T rs145035915 unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH12 1010 broad.mit.edu 37 5 21751733 21751733 + 3'UTR SNP G T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH12 1010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 21751935 21751935 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH12 1010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 21752149 21752149 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH12 1010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 21783501 21783501 + Silent SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH12 1010 broad.mit.edu;ucsc.edu 37 5 21760751 21760751 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH13 1012 hgsc.bcm.edu 37 16 83378559 83378559 + Silent SNP G G T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH13 1012 hgsc.bcm.edu;ucsc.edu 37 16 83816959 83816959 + Silent SNP C C A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH15 1013 hgsc.bcm.edu 37 16 89246670 89246670 + Silent SNP T T C rs59865771 bycluster;byfrequency;by1000genomes TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH16 1014 broad.mit.edu;ucsc.edu 37 16 66950224 66950224 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH17 1015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95183159 95183159 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH17 1015 hgsc.bcm.edu 37 8 95183103 95183103 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH18 1016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 19483487 19483487 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH18 1016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 19520813 19520813 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH18 1016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 19612594 19612594 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH18 1016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 19747190 19747190 + Silent SNP A A C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH18 1016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 19838883 19838883 + Silent SNP A A T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH18 1016 hgsc.bcm.edu 37 5 19544098 19544098 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH18 1016 hgsc.bcm.edu;ucsc.edu 37 5 19747281 19747281 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64172144 64172144 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64172226 64172226 + Silent SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64172301 64172301 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64172432 64172432 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64211271 64211273 + In_Frame_Del DEL GGG GGG - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 GGG GGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64235860 64235860 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH1 999 broad.mit.edu 37 16 68867611 68867612 + 3'UTR INS - T T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH1 999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68845698 68845698 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH1 999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68862136 68862136 + Silent SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDH1 999 hgsc.bcm.edu;ucsc.edu 37 16 68862122 68862122 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID CDH20 28316 broad.mit.edu;hgsc.bcm.edu 37 18 59195205 59195205 + Silent SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH20 28316 broad.mit.edu;hgsc.bcm.edu 37 18 59221899 59221899 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH2 1000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 25532271 25532271 + Nonsense_Mutation SNP A A T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH2 1000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 25583110 25583110 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH2 1000 broad.mit.edu;ucsc.edu 37 18 25591824 25591824 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH2 1000 hgsc.bcm.edu 37 18 25570227 25570228 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH2 1000 hgsc.bcm.edu 37 18 25593663 25593663 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH22 64405 broad.mit.edu;hgsc.bcm.edu 37 20 44806600 44806600 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH22 64405 hgsc.bcm.edu 37 20 44869833 44869833 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH23 64072 broad.mit.edu 37 10 73377297 73377297 + Intron DEL A - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH23 64072 broad.mit.edu 37 10 73442209 73442209 + Silent SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH23 64072 broad.mit.edu 37 10 73472417 73472417 + Intron SNP C T T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH23 64072 broad.mit.edu 37 10 73571840 73571840 + Intron SNP T C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH23 64072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73537549 73537549 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH23 64072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73544690 73544690 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDH23 64072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73574721 73574721 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH23 64072 hgsc.bcm.edu 37 10 73450274 73450274 + Silent SNP G G A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH23 64072 hgsc.bcm.edu 37 10 73483833 73483833 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH23 64072 hgsc.bcm.edu 37 10 73483833 73483833 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH23 64072 hgsc.bcm.edu 37 10 73562832 73562832 + Intron SNP G G T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH23 64072 hgsc.bcm.edu;ucsc.edu 37 10 73199633 73199633 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID CDH24 64403 broad.mit.edu 37 14 23521190 23521190 + Frame_Shift_Del DEL C - - novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH24 64403 broad.mit.edu;hgsc.bcm.edu 37 14 23522709 23522709 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH26 60437 hgsc.bcm.edu;ucsc.edu 37 20 58558000 58558000 + Missense_Mutation SNP G G A rs138324710 bycluster;byfrequency;by1000genomes TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH3 1001 broad.mit.edu;hgsc.bcm.edu 37 16 68721619 68721619 + Missense_Mutation SNP C C T rs145851551 unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH3 1001 hgsc.bcm.edu 37 16 68721570 68721570 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH4 1002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60499473 60499473 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH4 1002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60499490 60499490 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH4 1002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60511821 60511821 + Silent SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH4 1002 hgsc.bcm.edu 37 20 60348075 60348075 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH4 1002 hgsc.bcm.edu 37 20 60419771 60419771 + Silent SNP G G T novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH4 1002 hgsc.bcm.edu 37 20 60498753 60498753 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH5 1003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66430033 66430033 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH6 1004 broad.mit.edu 37 5 31250704 31250704 + Intron DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH6 1004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 31299715 31299715 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH6 1004 hgsc.bcm.edu;ucsc.edu 37 5 31305299 31305302 + Frame_Shift_Del DEL AAGA AAGA - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 AAGA AAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH7 1005 broad.mit.edu;hgsc.bcm.edu 37 18 63430077 63430077 + 5'UTR SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH7 1005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 63477170 63477170 + Silent SNP C C T rs143932384 unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH7 1005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 63530053 63530053 + Silent SNP C C T rs138789170 bycluster;byfrequency;by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH7 1005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 63530103 63530103 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH7 1005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 63547734 63547734 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH7 1005 broad.mit.edu;ucsc.edu 37 18 63430106 63430106 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH8 1006 broad.mit.edu 37 16 61687392 61687392 + 3'UTR SNP T C C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH8 1006 broad.mit.edu 37 16 62055486 62055486 + 5'UTR DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDH8 1006 broad.mit.edu;hgsc.bcm.edu 37 16 61851427 61851427 + Silent SNP C C A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH8 1006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 61689382 61689382 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH8 1006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 61851421 61851421 + Silent SNP C C A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH8 1006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 61854956 61854956 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH8 1006 hgsc.bcm.edu 37 16 61851549 61851550 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDH8 1006 hgsc.bcm.edu;ucsc.edu 37 16 61687743 61687743 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH8 1006 hgsc.bcm.edu;ucsc.edu 37 16 61761058 61761058 + Silent SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH8 1006 hgsc.bcm.edu;ucsc.edu 37 16 61935249 61935249 + Silent SNP C C T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDH9 1007 broad.mit.edu 37 5 26881222 26881222 + 3'UTR SNP A G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDHR1 92211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 85960393 85960393 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDHR1 92211 hgsc.bcm.edu;ucsc.edu 37 10 85960364 85960364 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDHR1 92211 hgsc.bcm.edu;ucsc.edu 37 10 85961624 85961624 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDHR2 54825 hgsc.bcm.edu;ucsc.edu 37 5 176017340 176017340 + Splice_Region SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDHR3 222256 hgsc.bcm.edu;ucsc.edu 37 7 105656408 105656408 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDHR3 222256 hgsc.bcm.edu;ucsc.edu 37 7 105672876 105672876 + Silent SNP A A T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDHR4 389118 hgsc.bcm.edu 37 3 49836830 49836830 + Silent SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDHR5 53841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 621602 621602 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDHR5 53841 hgsc.bcm.edu 37 11 617406 617407 + In_Frame_Ins INS - - CGCCCT novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDHR5 53841 hgsc.bcm.edu 37 11 618106 618106 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDHR5 53841 hgsc.bcm.edu 37 11 618965 618967 + In_Frame_Del DEL GTT GTT - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 GTT GTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDHR5 53841 hgsc.bcm.edu;ucsc.edu 37 11 619336 619336 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDHR5 53841 hgsc.bcm.edu 37 11 618013 618013 + Missense_Mutation SNP C C T rs7108757 bycluster;byfrequency;by1000genomes TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK10 8558 hgsc.bcm.edu 37 16 89753117 89753117 + RNA SNP G G C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK10 8558 hgsc.bcm.edu;ucsc.edu 37 16 89757047 89757047 + RNA SNP G G T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK11B 984 hgsc.bcm.edu 37 1 1571829 1571829 + Silent SNP A A G rs147836863 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK11B 984 hgsc.bcm.edu 37 1 1571841 1571841 + Missense_Mutation SNP A A C rs150949339 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK11B 984 hgsc.bcm.edu 37 1 1647893 1647894 + In_Frame_Ins INS - - TTTCTT novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK11B 984 hgsc.bcm.edu;ucsc.edu 37 1 1647893 1647894 + In_Frame_Ins INS - - TTTCTT novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK12 51755 broad.mit.edu;hgsc.bcm.edu 37 17 37681129 37681129 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK12 51755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37646824 37646824 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK12 51755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37681093 37681093 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK12 51755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37682372 37682372 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK12 51755 broad.mit.edu;ucsc.edu 37 17 37650846 37650846 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK12 51755 hgsc.bcm.edu 37 17 37618612 37618612 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK13 8621 broad.mit.edu;hgsc.bcm.edu 37 7 39991366 39991366 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK13 8621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40085608 40085608 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK13 8621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40134281 40134281 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK13 8621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40134425 40134425 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK14 5218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 90355879 90355879 + Splice_Site SNP A A T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDK14 5218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 90356089 90356089 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK15 65061 broad.mit.edu;hgsc.bcm.edu 37 2 202700487 202700487 + Splice_Site SNP G G T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK15 65061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202687539 202687539 + Silent SNP C C T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK17 5128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96683053 96683053 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK17(dist=257500) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 97051866 97051866 + IGR SNP G G T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK18 5129 broad.mit.edu 37 1 205499086 205499087 + Intron INS - A A rs140033093 bycluster;by1000genomes TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK18 5129 hgsc.bcm.edu;ucsc.edu 37 1 205494268 205494268 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK19 23097 hgsc.bcm.edu 37 6 111136336 111136336 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK20 23552 hgsc.bcm.edu 37 9 90585696 90585696 + Silent SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK2 1017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56363264 56363265 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK2 1017 hgsc.bcm.edu 37 12 56363267 56363267 + Silent SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK2 1017 hgsc.bcm.edu 37 12 56363324 56363324 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK2 1017 hgsc.bcm.edu 37 12 56363324 56363324 + Silent SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK2 1017 hgsc.bcm.edu;ucsc.edu 37 12 56360850 56360850 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK2AP1 8099 broad.mit.edu 37 12 123746106 123746106 + 3'UTR SNP T A A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK2AP2 10263 broad.mit.edu 37 11 67275231 67275231 + Intron SNP G T T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK2AP2 10263 broad.mit.edu 37 11 67275233 67275233 + Intron SNP A T T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK2AP2 10263 hgsc.bcm.edu 37 11 67274954 67274954 + Silent SNP G G C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK3 1018 broad.mit.edu;hgsc.bcm.edu 37 17 73998205 73998205 + Silent SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK3 1018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73998146 73998146 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK3 1018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73999331 73999331 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK3 1018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73999332 73999332 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK3 1018 broad.mit.edu;ucsc.edu 37 17 73999460 73999460 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK4 1019 hgsc.bcm.edu;ucsc.edu 37 12 58144726 58144726 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK5R1 8851 broad.mit.edu 37 17 30814589 30814589 + 5'UTR SNP C A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK5R2 8941 broad.mit.edu 37 2 219826020 219826021 + 3'UTR DEL CT - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK5RAP1 51654 broad.mit.edu 37 20 31960720 31960720 + Intron DEL T - - rs67566730 unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK5RAP1 51654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31946924 31946924 + Silent SNP G G A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK5RAP1 51654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31958402 31958402 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK5RAP1 51654 hgsc.bcm.edu 37 20 31946927 31946927 + Silent SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK5RAP2 55755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123205921 123205921 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK5RAP2 55755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123222946 123222946 + Splice_Site SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK5RAP2 55755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123292386 123292386 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK5RAP2 55755 hgsc.bcm.edu 37 9 123169477 123169477 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK5RAP2 55755 hgsc.bcm.edu 37 9 123169477 123169477 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK5RAP2 55755 hgsc.bcm.edu 37 9 123307998 123307998 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK5RAP3 80279 hgsc.bcm.edu 37 17 46053334 46053334 + Silent SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK5RAP3 80279 hgsc.bcm.edu;ucsc.edu 37 17 46051372 46051372 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK6 1021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92252376 92252376 + Silent SNP A A G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK7 1022 broad.mit.edu 37 5 68551654 68551654 + Intron DEL T - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDK8 1024 broad.mit.edu;hgsc.bcm.edu 37 13 26978230 26978230 + 3'UTR SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK8 1024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26923220 26923220 + Silent SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK8 1024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26974672 26974672 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDK8 1024 hgsc.bcm.edu;ucsc.edu 37 13 26911753 26911753 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDK9 1025 hgsc.bcm.edu 37 9 130548496 130548496 + Silent SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDKAL1 54901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 20781422 20781422 + Silent SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKL1 8814 broad.mit.edu;hgsc.bcm.edu 37 14 50862598 50862598 + 5'UTR SNP A A G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKL3 51265 hgsc.bcm.edu 37 5 133644047 133644047 + Silent SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDKL3 51265 hgsc.bcm.edu;ucsc.edu 37 5 133643866 133643866 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDKL3 51265 hgsc.bcm.edu;ucsc.edu 37 5 133655130 133655130 + Silent SNP T T C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDKL4 344387 broad.mit.edu;hgsc.bcm.edu 37 2 39405846 39405846 + 3'UTR SNP C C G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKL5 6792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 18622979 18622979 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKL5 6792 broad.mit.edu;ucsc.edu 37 X 18622812 18622812 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDKL5 6792 hgsc.bcm.edu 37 X 18622766 18622766 + Silent SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDKL5 6792 hgsc.bcm.edu;ucsc.edu 37 X 18616730 18616730 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDKN1A 1026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36652157 36652157 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKN2A 1029 broad.mit.edu 37 9 21974753 21974753 + Missense_Mutation SNP A C C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDKN2A 1029 hgsc.bcm.edu 37 9 21970901 21970901 + Missense_Mutation SNP C C T rs45476696 bycluster TCGA-BP-4163-01A-02W-1382-10 TCGA-BP-4163-11A-01W-1244-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq CDKN2A 1029 hgsc.bcm.edu 37 9 21970916 21970916 + Missense_Mutation SNP C C T rs3731249 bycluster;byfrequency;by1000genomes TCGA-CZ-5455-01A-01W-1528-10 TCGA-CZ-5455-11A-01W-1528-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq CDKN2A 1029 hgsc.bcm.edu 37 9 21971000 21971000 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4707-01A-01W-1359-10 TCGA-B0-4707-11A-01W-1359-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq CDKN2A 1029 hgsc.bcm.edu 37 9 21971163 21971164 + In_Frame_Ins INS - - AGC novel unknown TCGA-CZ-4858-01A-01W-1369-10 TCGA-CZ-4858-11A-01W-1370-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq CDKN2AIP 55602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184366710 184366710 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKN2AIP 55602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184367368 184367368 + Silent SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKN2AIP 55602 hgsc.bcm.edu;ucsc.edu 37 4 184368249 184368249 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKN2AIPNL 91368 broad.mit.edu 37 5 133738314 133738314 + 3'UTR DEL A - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDKN2AIPNL 91368 broad.mit.edu 37 5 133738314 133738314 + 3'UTR DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDKN2AIPNL 91368 broad.mit.edu;hgsc.bcm.edu 37 5 133747411 133747411 + Silent SNP C C A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKN2AIPNL 91368 hgsc.bcm.edu;ucsc.edu 37 5 133747410 133747410 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDKN2C 1031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 51436156 51436156 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CDON 50937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 125891274 125891274 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDR1 1038 hgsc.bcm.edu;ucsc.edu 37 X 139865947 139865947 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CDRT1 374286 broad.mit.edu;hgsc.bcm.edu 37 17 15516051 15516051 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDRT15P 0 broad.mit.edu 37 17 13927900 13927900 + RNA SNP T C C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDS2 8760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 5154171 5154171 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDSN 1041 broad.mit.edu;hgsc.bcm.edu 37 6 31088189 31088189 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDSN 1041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31084879 31084879 + Silent SNP C C G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDT1 81620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88872184 88872184 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDV3 55573 broad.mit.edu 37 3 133306950 133306950 + 3'UTR SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDV3 55573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 133302937 133302937 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDV3 55573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 133306843 133306843 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDV3 55573 broad.mit.edu;ucsc.edu 37 3 133302927 133302927 + Silent SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDX1 1044 broad.mit.edu;hgsc.bcm.edu 37 5 149563073 149563073 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDX1 1044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149562381 149562381 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDX2 1045 broad.mit.edu 37 13 28542693 28542693 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDX2 1045 broad.mit.edu 37 13 28542702 28542703 + Frame_Shift_Ins INS - G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CDX4 1046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 72673463 72673463 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDYL 9425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 4735076 4735076 + RNA SNP C C G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CDYL 9425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 4892566 4892566 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM1 634 hgsc.bcm.edu;ucsc.edu 37 19 43023295 43023295 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEACAM20 125931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45026873 45026873 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM3 1084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42301589 42301589 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM3 1084 hgsc.bcm.edu 37 19 42301733 42301733 + Missense_Mutation SNP G G C rs61737016 bycluster;byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM3 1084 hgsc.bcm.edu;ucsc.edu 37 19 42301763 42301763 + Missense_Mutation SNP A A C rs61737014 byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM4 1089 hgsc.bcm.edu;ucsc.edu 37 19 42132122 42132123 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM4 1089 hgsc.bcm.edu;ucsc.edu 37 19 42132312 42132312 + Silent SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEACAM5 1048 broad.mit.edu;hgsc.bcm.edu 37 19 42213711 42213711 + Silent SNP C C A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM5 1048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42219626 42219626 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM5 1048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42221409 42221409 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEACAM5 1048 hgsc.bcm.edu 37 19 42213868 42213868 + Missense_Mutation SNP A A G rs34155934 bycluster;byfrequency;by1000genomes TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEACAM5 1048 hgsc.bcm.edu;ucsc.edu 37 19 42219789 42219789 + Silent SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEACAM6 4680 broad.mit.edu 37 19 42260806 42260806 + Silent SNP C T T rs138986236 unknown;alternate_allele TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEBPA 1050 hgsc.bcm.edu 37 19 33792387 33792387 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEBPA 1050 hgsc.bcm.edu 37 19 33792412 33792412 + Silent SNP G G T novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEBPA 1050 hgsc.bcm.edu 37 19 33792421 33792421 + Silent SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEBPG 1054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33870405 33870405 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEBPZ 10153 hgsc.bcm.edu 37 2 37428927 37428929 + In_Frame_Del DEL TTT TTT - rs148813970 by1000genomes TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 TTT TTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEBPZ 10153 hgsc.bcm.edu 37 2 37428927 37428929 + In_Frame_Del DEL TTT TTT - rs148813970 by1000genomes TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 TTT TTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CECR1 51816 broad.mit.edu;hgsc.bcm.edu 37 22 17672507 17672507 + Intron SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CECR1 51816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17672628 17672628 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CECR1 51816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17690279 17690279 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CECR2 27443 broad.mit.edu 37 22 18021869 18021869 + Silent SNP C T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CECR2 27443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17978494 17978494 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CECR2 27443 hgsc.bcm.edu 37 22 18032486 18032486 + Intron SNP T T A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELA1 1990 hgsc.bcm.edu 37 12 51740413 51740414 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELA1 1990 hgsc.bcm.edu 37 12 51740415 51740416 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELA3A 10136 broad.mit.edu;ucsc.edu 37 1 22336337 22336337 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELA3A 10136 hgsc.bcm.edu 37 1 22332241 22332241 + Missense_Mutation SNP A A G rs75527968 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELA3A 10136 hgsc.bcm.edu 37 1 22333988 22333988 + Missense_Mutation SNP T T G rs112024506 unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELA3B 23436 broad.mit.edu 37 1 22310726 22310726 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELA3B 23436 broad.mit.edu 37 1 22332332 22332332 + 3'UTR SNP T C C rs74922245 unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELA3B 23436 broad.mit.edu 37 1 22332333 22332333 + 3'UTR SNP G A A rs76102053 unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELA3B 23436 broad.mit.edu 37 1 22332333 22332333 + 3'UTR SNP G A A rs76102053 unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELA3B 23436 broad.mit.edu;hgsc.bcm.edu 37 1 22304925 22304925 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF1 10658 broad.mit.edu 37 11 47493672 47493672 + Intron SNP A G G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELF2 10659 hgsc.bcm.edu;ucsc.edu 37 10 11291100 11291100 + Intron SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF2 10659 broad.mit.edu 37 10 11300012 11300012 + Intron DEL C - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELF3 11189 broad.mit.edu;hgsc.bcm.edu 37 1 151681728 151681728 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF3 11189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151688472 151688472 + Silent SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF3 11189 broad.mit.edu 37 1 151679697 151679697 + Nonsense_Mutation SNP G T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELF4 56853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34833794 34833794 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF4 56853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34833813 34833813 + Silent SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF4 56853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34855139 34855139 + Silent SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF4 56853 broad.mit.edu 37 18 35145787 35145788 + 5'UTR DEL CG - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELF4 56853 broad.mit.edu;ucsc.edu 37 18 34846493 34846493 + Intron SNP A G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELF4 56853 hgsc.bcm.edu 37 18 35145518 35145518 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CELF5 60680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3281241 3281241 + Silent SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF5 60680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3293438 3293438 + Silent SNP C C A rs142809979 unknown;alternate_allele TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF6 60677 broad.mit.edu;hgsc.bcm.edu 37 15 72579580 72579580 + 3'UTR SNP T T A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF6 60677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72579669 72579669 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELF6 60677 broad.mit.edu;ucsc.edu 37 15 72597100 72597100 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR1 9620 broad.mit.edu;hgsc.bcm.edu 37 22 46792566 46792566 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR1 9620 broad.mit.edu;hgsc.bcm.edu 37 22 46807519 46807519 + Silent SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR1 9620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46793698 46793698 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR1 9620 broad.mit.edu;ucsc.edu 37 22 46807533 46807533 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR1 9620 hgsc.bcm.edu 37 22 46759085 46759111 + Frame_Shift_Del DEL CTGATGGTTCAAATTGAAGTTTCATTA CTGATGGTTCAAATTGAAGTTTCATTA - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 CTGATGGTTCAAATTGAAGTTTCATTA CTGATGGTTCAAATTGAAGTTTCATTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR1 9620 hgsc.bcm.edu 37 22 46832125 46832125 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CELSR1 9620 hgsc.bcm.edu;ucsc.edu 37 22 46793633 46793633 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CELSR1 9620 hgsc.bcm.edu;ucsc.edu 37 22 46930036 46930036 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR2 1952 broad.mit.edu 37 1 109816863 109816864 + 3'UTR INS - C C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR2 1952 broad.mit.edu 37 1 109816863 109816864 + 3'UTR INS - C C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR2 1952 broad.mit.edu;hgsc.bcm.edu 37 1 109794802 109794802 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR2 1952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109793167 109793167 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR2 1952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109795801 109795801 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR2 1952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109805009 109805009 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR2 1952 hgsc.bcm.edu 37 1 109792735 109792736 + In_Frame_Ins INS - - CGC novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR2 1952 hgsc.bcm.edu 37 1 109792735 109792736 + In_Frame_Ins INS - - CGC novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR3 1951 broad.mit.edu 37 3 48682540 48682540 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR3 1951 broad.mit.edu 37 3 48682639 48682639 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR3 1951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48697119 48697119 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CELSR3 1951 broad.mit.edu;ucsc.edu 37 3 48682160 48682160 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CELSR3 1951 hgsc.bcm.edu 37 3 48689867 48689867 + Splice_Region SNP C C A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEMP1 752014 hgsc.bcm.edu 37 16 2580881 2580881 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPA 1058 hgsc.bcm.edu;ucsc.edu 37 2 27015008 27015008 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPA 1058 hgsc.bcm.edu;ucsc.edu 37 2 27015010 27015010 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPB 1059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3765589 3765589 + Silent SNP A A G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPB 1059 hgsc.bcm.edu 37 20 3765529 3765529 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPB 1059 hgsc.bcm.edu 37 20 3765532 3765532 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPB 1059 hgsc.bcm.edu 37 20 3765902 3765902 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPB 1059 hgsc.bcm.edu 37 20 3765902 3765902 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPC1 1060 broad.mit.edu 37 4 68338163 68338164 + 3'UTR DEL TG - - rs76941090 bycluster;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPC1 1060 broad.mit.edu 37 4 68338222 68338222 + 3'UTR SNP T A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPC1 1060 broad.mit.edu;hgsc.bcm.edu 37 4 68384984 68384984 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPC1 1060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68358686 68358686 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPC1 1060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68380078 68380078 + Silent SNP A A G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPE 1062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104054940 104054940 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CENPE 1062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104080236 104080236 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPE 1062 broad.mit.edu;ucsc.edu 37 4 104061981 104061981 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPE 1062 broad.mit.edu;ucsc.edu 37 4 104097155 104097155 + Nonsense_Mutation SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPE 1062 hgsc.bcm.edu 37 4 104115562 104115562 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID CENPF 1063 broad.mit.edu 37 1 214781973 214781973 + Intron SNP T C C novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPF 1063 broad.mit.edu 37 1 214781973 214781973 + Intron SNP T C C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214802408 214802408 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214813680 214813680 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214818566 214818566 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214818891 214818891 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214825173 214825173 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CENPF 1063 broad.mit.edu;ucsc.edu 37 1 214830403 214830403 + Silent SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPF 1063 hgsc.bcm.edu 37 1 214815523 214815523 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPF 1063 hgsc.bcm.edu 37 1 214818442 214818442 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPH 64946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 68505612 68505612 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPH 64946 hgsc.bcm.edu 37 5 68505568 68505568 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPH 64946 hgsc.bcm.edu;ucsc.edu 37 5 68504122 68504122 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPI 2491 broad.mit.edu;hgsc.bcm.edu 37 X 100381784 100381784 + Silent SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPJ 55835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25466970 25466970 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPJ 55835 hgsc.bcm.edu 37 13 25486101 25486101 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPJ 55835 hgsc.bcm.edu;ucsc.edu 37 13 25457359 25457359 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPK 64105 hgsc.bcm.edu;ucsc.edu 37 5 64847410 64847410 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPL 91687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173780412 173780412 + Nonsense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPM 79019 broad.mit.edu 37 22 42335169 42335169 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CENPN 55839 hgsc.bcm.edu;ucsc.edu 37 16 81056260 81056260 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPP 401541 hgsc.bcm.edu;ucsc.edu 37 9 95107974 95107974 + Intron SNP A A C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPP 401541 hgsc.bcm.edu;ucsc.edu 37 9 95108909 95108909 + Intron SNP C C A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPT 80152 hgsc.bcm.edu 37 16 67863680 67863680 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CENPW 387103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 126667412 126667412 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CENPW 387103 broad.mit.edu;ucsc.edu 37 6 126669610 126669610 + Splice_Site SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP110 0 broad.mit.edu 37 9 123939699 123939699 + 3'UTR DEL T - - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP110 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123870184 123870184 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP110 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123900914 123900914 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP110 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123917154 123917154 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP110 0 hgsc.bcm.edu 37 9 123935751 123935751 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP110 0 hgsc.bcm.edu;ucsc.edu 37 9 123860779 123860779 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP110 0 hgsc.bcm.edu;ucsc.edu 37 9 123930585 123930585 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP120 153241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122685709 122685709 + Silent SNP A A T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP120 153241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122722335 122722335 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP120 153241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122722336 122722336 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP135 9662 broad.mit.edu;hgsc.bcm.edu 37 4 56825852 56825852 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP135 9662 broad.mit.edu;hgsc.bcm.edu 37 4 56884018 56884018 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP135 9662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 56890684 56890684 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP152 22995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49048532 49048532 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP152 22995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49089548 49089548 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP152 22995 hgsc.bcm.edu;ucsc.edu 37 15 49088226 49088228 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP164 22897 broad.mit.edu 37 11 117256846 117256846 + Intron DEL T - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP164 22897 broad.mit.edu 37 11 117280564 117280564 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP164 22897 broad.mit.edu 37 11 117280703 117280703 + Intron SNP G C C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP164 22897 broad.mit.edu 37 11 117280704 117280704 + Intron SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117244472 117244472 + Silent SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117263006 117263006 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117263760 117263760 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117265695 117265695 + Silent SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117280582 117280582 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP164 22897 hgsc.bcm.edu 37 11 117281533 117281533 + Intron SNP T T G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP170 9859 broad.mit.edu 37 1 243303430 243303430 + Intron SNP C A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP170 9859 broad.mit.edu 37 1 243328076 243328076 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP170 9859 broad.mit.edu 37 1 243362432 243362432 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP170 9859 hgsc.bcm.edu 37 1 243328392 243328393 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP170 9859 hgsc.bcm.edu 37 1 243336127 243336127 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP192 55125 broad.mit.edu 37 18 13114353 13114353 + Intron SNP C T T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP192 55125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 13114196 13114196 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP250 11190 hgsc.bcm.edu;ucsc.edu 37 20 34050332 34050332 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP250 11190 hgsc.bcm.edu;ucsc.edu 37 20 34053567 34053567 + Splice_Site SNP G G C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP290 80184 broad.mit.edu 37 12 88483261 88483261 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP290 80184 broad.mit.edu 37 12 88496844 88496844 + Intron SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP290 80184 broad.mit.edu 37 12 88496844 88496844 + Intron SNP C T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP290 80184 broad.mit.edu 37 12 88496844 88496844 + Intron SNP C T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP290 80184 broad.mit.edu 37 12 88496844 88496844 + Intron SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP290 80184 broad.mit.edu 37 12 88496844 88496844 + Intron SNP C T T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP290 80184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88514013 88514013 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP290 80184 hgsc.bcm.edu;ucsc.edu 37 12 88471086 88471086 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP290 80184 hgsc.bcm.edu;ucsc.edu 37 12 88482866 88482866 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP350 9857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180063129 180063129 + Missense_Mutation SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP350 9857 hgsc.bcm.edu;ucsc.edu 37 1 180065296 180065296 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP57 9702 broad.mit.edu 37 11 95523745 95523745 + 5'UTR SNP T G G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP57 9702 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 95564238 95564238 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP57 9702 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 95564248 95564248 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP57L1 285753 broad.mit.edu;hgsc.bcm.edu 37 6 109484145 109484145 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP63 80254 broad.mit.edu 37 3 134282792 134282792 + 3'UTR DEL C - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP68 23177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65298597 65298597 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP68 23177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65299148 65299148 + Silent SNP T T G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP68 23177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65300044 65300044 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP70 80321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 138216885 138216885 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP70 80321 hgsc.bcm.edu 37 3 138213854 138213854 + 3'UTR SNP T T A rs4035333 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP72 55722 hgsc.bcm.edu;ucsc.edu 37 5 624633 624633 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP76 79959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 12697299 12697299 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP76 79959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 12701062 12701062 + Silent SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP78 84131 broad.mit.edu 37 9 80864564 80864565 + Intron INS - T T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP97 79598 broad.mit.edu 37 3 101450513 101450513 + Intron SNP C G G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEP97 79598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 101476746 101476746 + Silent SNP T T C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEP97 79598 hgsc.bcm.edu;ucsc.edu 37 3 101476035 101476035 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CEP97 79598 hgsc.bcm.edu;ucsc.edu 37 3 101476949 101476949 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CEPT1 10390 broad.mit.edu 37 1 111702305 111702316 + Intron DEL TTATTGGTAGTG - - novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 TTATTGGTAGTG TTATTGGTAGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CEPT1 10390 broad.mit.edu 37 1 111703576 111703576 + Intron DEL A - - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CER1 9350 hgsc.bcm.edu 37 9 14720359 14720359 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CERCAM 51148 broad.mit.edu 37 9 131196482 131196482 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CERCAM 51148 broad.mit.edu 37 9 131196483 131196483 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CERCAM 51148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131193563 131193563 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CERCAM 51148 hgsc.bcm.edu 37 9 131185203 131185209 + Frame_Shift_Del DEL CGGCTGT CGGCTGT - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 CGGCTGT CGGCTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CERCAM 51148 hgsc.bcm.edu 37 9 131185203 131185209 + Frame_Shift_Del DEL CGGCTGT CGGCTGT - novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 CGGCTGT CGGCTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CERCAM 51148 hgsc.bcm.edu 37 9 131185208 131185208 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CERK 64781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 47116101 47116101 + Silent SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CERKL 375298 hgsc.bcm.edu 37 2 182403925 182403925 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CERKL 375298 hgsc.bcm.edu 37 2 182430234 182430234 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CES1 1066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55844874 55844874 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CES1 1066 hgsc.bcm.edu 37 16 55844927 55844927 + Splice_Region SNP A A C rs2302722 bycluster;byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CES1 1066 hgsc.bcm.edu 37 16 55844929 55844929 + Splice_Region SNP A A C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CES1 1066 hgsc.bcm.edu 37 16 55862682 55862682 + Missense_Mutation SNP G G A rs144498758 byfrequency TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CES2 8824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66973125 66973125 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CES2 8824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66976070 66976070 + Silent SNP C C G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CES2 8824 hgsc.bcm.edu 37 16 66976005 66976005 + Splice_Region SNP T T C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CES2 8824 hgsc.bcm.edu;ucsc.edu 37 16 66972074 66972074 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CES4 0 broad.mit.edu 37 16 55794605 55794605 + 5'UTR SNP G C C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CES4A 283848 hgsc.bcm.edu 37 16 67029715 67029715 + Silent SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CES5A 221223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55907817 55907817 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CES7 0 broad.mit.edu 37 16 55903470 55903470 + Intron SNP C A A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFB 629 broad.mit.edu 37 6 31918204 31918204 + Intron DEL G - - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFB 629 hgsc.bcm.edu 37 6 31915778 31915778 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CFC1B 653275 hgsc.bcm.edu 37 2 131279423 131279423 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CFH 3075 broad.mit.edu 37 1 196621079 196621079 + 5'UTR SNP G T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFH 3075 broad.mit.edu;hgsc.bcm.edu 37 1 196642129 196642129 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFH 3075 broad.mit.edu;hgsc.bcm.edu 37 1 196642130 196642130 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFH 3075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196642242 196642242 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFH 3075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196684863 196684863 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFH 3075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196695938 196695938 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFHR1 3078 broad.mit.edu 37 1 196801227 196801227 + 3'UTR SNP G T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFHR1 3078 hgsc.bcm.edu 37 1 196797292 196797292 + Missense_Mutation SNP G G C rs388862 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFHR2 3080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196927137 196927137 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFHR2 3080 hgsc.bcm.edu;ucsc.edu 37 1 196918739 196918739 + Silent SNP G G A rs61746417 bycluster;byfrequency;by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFHR3 10878 broad.mit.edu;hgsc.bcm.edu 37 1 196762628 196762628 + Silent SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFHR3 10878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196749100 196749100 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFHR4 10877 broad.mit.edu 37 1 196874273 196874273 + Intron SNP G T T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFHR4 10877 broad.mit.edu 37 1 196876024 196876024 + Intron SNP G C C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFHR4 10877 broad.mit.edu 37 1 196879578 196879578 + Intron SNP G T T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFHR4 10877 broad.mit.edu;hgsc.bcm.edu 37 1 196883638 196883638 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFI 3426 hgsc.bcm.edu;ucsc.edu 37 4 110678946 110678946 + Intron SNP A A C rs140555685 by1000genomes;alternate_allele TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFL1 1072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65623211 65623211 + Intron SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFL1 1072 hgsc.bcm.edu 37 11 65622863 65622863 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFLAR 8837 broad.mit.edu 37 2 201994484 201994484 + 5'UTR SNP T C C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFLAR 8837 broad.mit.edu 37 2 202003145 202003145 + Intron SNP T C C novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFLAR 8837 broad.mit.edu 37 2 202003449 202003449 + Intron SNP T G G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFLAR 8837 broad.mit.edu;hgsc.bcm.edu 37 2 201997707 201997707 + Intron SNP A A T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFLAR 8837 broad.mit.edu;hgsc.bcm.edu 37 2 202025389 202025389 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFP 5199 broad.mit.edu 37 X 47483959 47483960 + Intron INS - T T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFP 5199 broad.mit.edu 37 X 47483959 47483960 + Intron INS - T T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFP 5199 broad.mit.edu 37 X 47483960 47483960 + Intron SNP T C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFP 5199 broad.mit.edu 37 X 47487501 47487501 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CFP 5199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47485783 47485783 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFP 5199 hgsc.bcm.edu 37 X 47489070 47489070 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CFTR 1080 broad.mit.edu;hgsc.bcm.edu 37 7 117180383 117180383 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFTR 1080 broad.mit.edu;hgsc.bcm.edu 37 7 117251654 117251654 + Silent SNP T T G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFTR 1080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117199625 117199625 + Silent SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFTR 1080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117232369 117232369 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CFTR 1080 hgsc.bcm.edu 37 7 117170982 117170982 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CFTR 1080 hgsc.bcm.edu 37 7 117188815 117188818 + Frame_Shift_Del DEL ATTA ATTA - novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 ATTA ATTA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CFTR 1080 hgsc.bcm.edu 37 7 117188850 117188850 + Silent SNP G G T rs79074685 bycluster;byfrequency TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CGA 1081 broad.mit.edu 37 6 87795372 87795372 + 3'UTR SNP A T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGB 1082 broad.mit.edu 37 19 49527339 49527339 + 5'UTR SNP C T T rs74174265 unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGB 1082 hgsc.bcm.edu 37 19 49526180 49526180 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CGB1 114335 broad.mit.edu 37 19 49540093 49540093 + 5'UTR SNP A C C rs10853805 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGB2 114336 broad.mit.edu 37 19 49535524 49535524 + Intron SNP C T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGB5 93659 hgsc.bcm.edu 37 19 49547504 49547504 + Intron SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CGB5 93659 hgsc.bcm.edu 37 19 49547504 49547504 + Intron SNP C C G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CGB7 94027 broad.mit.edu 37 19 49558850 49558850 + 5'UTR SNP G A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGGBP1 8545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 88104822 88104822 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CGN 57530 broad.mit.edu 37 1 151506887 151506887 + Intron DEL C - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGN 57530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151496775 151496775 + Silent SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CGN 57530 hgsc.bcm.edu;ucsc.edu 37 1 151498197 151498197 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CGNL1 84952 broad.mit.edu 37 15 57732654 57732654 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGNL1 84952 broad.mit.edu 37 15 57842136 57842136 + 3'UTR DEL G - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGNL1 84952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57816796 57816796 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CGNL1 84952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57836715 57836715 + Nonsense_Mutation SNP C C G rs137878510 by1000genomes;alternate_allele TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CGNL1 84952 hgsc.bcm.edu 37 15 57816814 57816814 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CGRRF1 10668 broad.mit.edu 37 14 54997025 54997025 + Intron SNP C T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGRRF1 10668 broad.mit.edu 37 14 54997070 54997070 + Intron SNP T C C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGRRF1 10668 broad.mit.edu 37 14 54997070 54997070 + Intron SNP T C C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGRRF1 10668 broad.mit.edu 37 14 54997352 54997352 + Intron SNP C T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGRRF1 10668 broad.mit.edu 37 14 55005104 55005104 + 3'UTR SNP A G G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CGRRF1 10668 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55004493 55004493 + Silent SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CGRRF1 10668 hgsc.bcm.edu;ucsc.edu 37 14 54996813 54996813 + Silent SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CH25H 9023 broad.mit.edu;ucsc.edu 37 10 90966990 90966990 + Silent SNP C T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CH25H 9023 hgsc.bcm.edu;ucsc.edu 37 10 90966472 90966472 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHAD 1101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48543170 48543170 + Missense_Mutation SNP C C T rs142146358 unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAD 1101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48545894 48545894 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHADL 150356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41632577 41632577 + Silent SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAF1A 10036 broad.mit.edu;hgsc.bcm.edu 37 19 4430546 4430546 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAF1A 10036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4408962 4408962 + Missense_Mutation SNP G G T rs61729782 unknown;alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAF1A 10036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4409322 4409322 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAF1A 10036 broad.mit.edu;ucsc.edu 37 19 4433326 4433326 + Silent SNP C T T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHAF1A 10036 hgsc.bcm.edu 37 19 4405899 4405899 + Splice_Region SNP T T G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHAF1A 10036 hgsc.bcm.edu 37 19 4428837 4428837 + Silent SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHAF1B 8208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37783835 37783835 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAF1B 8208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37785583 37785583 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAT 1103 broad.mit.edu;hgsc.bcm.edu 37 10 50833615 50833615 + Silent SNP C C T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHAT 1103 hgsc.bcm.edu 37 10 50873114 50873114 + 3'UTR SNP T T C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHCHD10 400916 broad.mit.edu 37 22 24108075 24108075 + 3'UTR SNP G T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHCHD3 54927 broad.mit.edu 37 7 132719639 132719639 + Intron SNP G A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHCHD3 54927 hgsc.bcm.edu 37 7 132470404 132470404 + Silent SNP T T A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHCHD5 84269 broad.mit.edu 37 2 113343969 113343969 + Intron SNP T A A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD1 1105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 98204294 98204294 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD1 1105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 98228309 98228309 + Silent SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD1 1105 hgsc.bcm.edu 37 5 98192165 98192167 + In_Frame_Del DEL AGG AGG - rs138635992 bycluster;by1000genomes TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 AGG AGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD1L 9557 broad.mit.edu 37 1 146731281 146731281 + Intron DEL A - - novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD2 1106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 93489310 93489310 + Missense_Mutation SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD2 1106 hgsc.bcm.edu 37 15 93492306 93492306 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD2 1106 hgsc.bcm.edu 37 15 93545457 93545457 + Silent SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD2 1106 hgsc.bcm.edu;ucsc.edu 37 15 93567834 93567834 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD3 1107 broad.mit.edu;hgsc.bcm.edu 37 17 7801818 7801818 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD3 1107 broad.mit.edu;hgsc.bcm.edu 37 17 7806304 7806304 + Silent SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD3 1107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7797756 7797756 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD3 1107 broad.mit.edu;ucsc.edu 37 17 7805978 7805978 + Nonsense_Mutation SNP C A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD3 1107 hgsc.bcm.edu 37 17 7802423 7802423 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD3 1107 hgsc.bcm.edu;ucsc.edu 37 17 7797795 7797795 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD4 1108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6688041 6688041 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD4 1108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6690533 6690533 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD4 1108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6690827 6690827 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD4 1108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6701634 6701634 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD4 1108 hgsc.bcm.edu 37 12 6711145 6711147 + In_Frame_Del DEL TCC TCC - novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD4 1108 hgsc.bcm.edu;ucsc.edu 37 12 6692033 6692033 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD5 26038 broad.mit.edu;hgsc.bcm.edu 37 1 6212526 6212526 + Silent SNP G G A rs140463225 byfrequency TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD5 26038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6170533 6170533 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHD5 26038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6214898 6214898 + Silent SNP A A C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD5 26038 broad.mit.edu;ucsc.edu 37 1 6208965 6208965 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD5 26038 hgsc.bcm.edu 37 1 6171886 6171886 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD5 26038 hgsc.bcm.edu;ucsc.edu 37 1 6228284 6228284 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID CHD6 84181 broad.mit.edu 37 20 40065870 40065870 + Intron SNP T C C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD6 84181 broad.mit.edu;hgsc.bcm.edu 37 20 40126775 40126775 + Intron SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD6 84181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40033900 40033900 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD6 84181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40126106 40126106 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD6 84181 hgsc.bcm.edu;ucsc.edu 37 20 40081483 40081483 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD6 84181 hgsc.bcm.edu;ucsc.edu 37 20 40116335 40116335 + Silent SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61732614 61732614 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61754584 61754584 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61757864 61757864 + Silent SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61761689 61761689 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61763106 61763106 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61769234 61769234 + Silent SNP T T C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD7 55636 broad.mit.edu;ucsc.edu 37 8 61768568 61768568 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD7 55636 hgsc.bcm.edu 37 8 61743043 61743043 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD7 55636 hgsc.bcm.edu 37 8 61763833 61763833 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD7 55636 hgsc.bcm.edu 37 8 61777948 61777948 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD8 57680 broad.mit.edu;hgsc.bcm.edu 37 14 21873953 21873953 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHD8 57680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21875113 21875113 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD8 57680 hgsc.bcm.edu;ucsc.edu 37 14 21899161 21899161 + Intron SNP A A G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD9 80205 broad.mit.edu 37 16 53269085 53269085 + Intron SNP T A A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHD9 80205 broad.mit.edu 37 16 53308192 53308192 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G G G G G Unknown Unknown Somatic Phase_I Capture 454 Illumina GAIIx CHD9 80205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53320220 53320220 + Silent SNP T T G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD9 80205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53340243 53340243 + Silent SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD9 80205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53358659 53358659 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD9 80205 hgsc.bcm.edu 37 16 53358033 53358033 + Silent SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD9 80205 hgsc.bcm.edu 37 16 53358033 53358033 + Silent SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHD9 80205 hgsc.bcm.edu;ucsc.edu 37 16 53296952 53296952 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHD9 80205 hgsc.bcm.edu;ucsc.edu 37 16 53352213 53352213 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID CHD9 80205 hgsc.bcm.edu;ucsc.edu 37 16 53352219 53352219 + Silent SNP T T A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHDH 55349 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53853056 53853056 + Silent SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHDH 55349 hgsc.bcm.edu;ucsc.edu 37 3 53851850 53851850 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHDH 55349 hgsc.bcm.edu;ucsc.edu 37 3 53853013 53853013 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHEK2 11200 broad.mit.edu;hgsc.bcm.edu 37 22 29091840 29091840 + Missense_Mutation SNP T T C rs74751600 unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHEK2 11200 broad.mit.edu;hgsc.bcm.edu 37 22 29091840 29091840 + Missense_Mutation SNP T T C rs74751600 unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHEK2 11200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 29121349 29121349 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHEK2 11200 hgsc.bcm.edu;ucsc.edu 37 22 29091808 29091808 + Silent SNP G G A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHERP 10523 broad.mit.edu 37 19 16643105 16643105 + Intron DEL C - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHERP 10523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16630029 16630029 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHERP 10523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16634081 16634081 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHFR 55743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133435664 133435664 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHFR 55743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133454165 133454165 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHFR 55743 hgsc.bcm.edu 37 12 133454224 133454224 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHGA 1113 hgsc.bcm.edu 37 14 93397681 93397681 + Missense_Mutation SNP G G A rs150244309 bycluster;by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHGB 1114 broad.mit.edu 37 20 5903113 5903113 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHGB 1114 broad.mit.edu;hgsc.bcm.edu 37 20 5903114 5903114 + Silent SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHI3L1 1116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203148901 203148901 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHI3L1 1116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203155750 203155750 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHI3L1 1116 hgsc.bcm.edu 37 1 203149655 203149655 + Silent SNP T T G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHI3L2 1117 hgsc.bcm.edu 37 1 111773534 111773534 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHIA 27159 broad.mit.edu;hgsc.bcm.edu 37 1 111857933 111857933 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIA 27159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111860638 111860638 + Silent SNP C C T rs148384495 byfrequency TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIA 27159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111861178 111861178 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIC2 26511 broad.mit.edu 37 4 54876121 54876122 + 3'UTR INS - A A rs34881525 unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHIC2 26511 broad.mit.edu 37 4 54876132 54876132 + 3'UTR DEL C - - rs68107873 bycluster TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHID1 66005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 869878 869878 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHID1 66005 hgsc.bcm.edu;ucsc.edu 37 11 902972 902972 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHIT1 1118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203186906 203186906 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIT1 1118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203188874 203188874 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIT1 1118 hgsc.bcm.edu 37 1 203186979 203186979 + Missense_Mutation SNP C C G rs140228721 unknown;alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHIT1 1118 hgsc.bcm.edu 37 1 203188855 203188856 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIT1 1118 hgsc.bcm.edu 37 1 203188855 203188856 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHIT1 1118 hgsc.bcm.edu;ucsc.edu 37 1 203188447 203188447 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHKB 1120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 51018844 51018844 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHL1 10752 broad.mit.edu;hgsc.bcm.edu 37 3 391066 391066 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHL1 10752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 367660 367660 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHL1 10752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 443351 443351 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHM 1121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 85213896 85213896 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHML 1122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241797696 241797696 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP1B 57132 broad.mit.edu 37 18 11852138 11852138 + 3'UTR SNP G T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHMP1B 57132 hgsc.bcm.edu 37 18 11851738 11851739 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP1B 57132 hgsc.bcm.edu 37 18 11851896 11851896 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHMP1B 57132 hgsc.bcm.edu;ucsc.edu 37 18 11851688 11851688 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHMP2A 27243 hgsc.bcm.edu 37 19 59063013 59063013 + 3'UTR SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP2B 25978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 87302584 87302584 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP4B 128866 hgsc.bcm.edu;ucsc.edu 37 20 32436409 32436409 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP6 79643 broad.mit.edu 37 17 78973435 78973435 + 3'UTR DEL G - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHMP7 91782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 23116262 23116262 + Silent SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP7 91782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 23118090 23118090 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHMP7 91782 hgsc.bcm.edu 37 8 23115611 23115611 + Intron SNP T T C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHN1 1123 broad.mit.edu;hgsc.bcm.edu 37 2 175742574 175742574 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHN1 1123 hgsc.bcm.edu;ucsc.edu 37 2 175742775 175742775 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHN2 1124 hgsc.bcm.edu 37 7 29394222 29394222 + Intron SNP T T C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHN2 1124 hgsc.bcm.edu;ucsc.edu 37 7 29407578 29407578 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHODL 140578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19629058 19629058 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHORDC1 26973 hgsc.bcm.edu 37 11 89956063 89956063 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHP 0 broad.mit.edu 37 15 41571706 41571706 + 3'UTR SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHP 0 hgsc.bcm.edu;ucsc.edu 37 15 41571548 41571548 + Silent SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHPF2 54480 hgsc.bcm.edu 37 7 150934826 150934827 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHPT1 56994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 102107933 102107933 + Silent SNP T T A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHPT1 56994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 102120124 102120124 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRAC1 54108 broad.mit.edu 37 8 141521619 141521619 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRD 8646 broad.mit.edu 37 3 184100196 184100196 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRD 8646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184102984 184102984 + Silent SNP G G T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRD 8646 broad.mit.edu;ucsc.edu 37 3 184103856 184103856 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRDL2 25884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74413875 74413875 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRFAM7A 89832 broad.mit.edu 37 15 30665422 30665422 + Intron SNP T C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRFAM7A 89832 hgsc.bcm.edu 37 15 30664489 30664489 + Silent SNP A A G rs386715 bycluster;byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRFAM7A 89832 hgsc.bcm.edu 37 15 30665281 30665282 + Frame_Shift_Del DEL CA CA - rs67158670 bycluster;byfrequency TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRFAM7A 89832 hgsc.bcm.edu 37 15 30665281 30665282 + Frame_Shift_Del DEL CA CA - rs67158670 bycluster;byfrequency TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRM2 1129 broad.mit.edu 37 7 136701169 136701169 + 3'UTR SNP C G G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRM2 1129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 136700123 136700123 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRM2 1129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 136700642 136700642 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRM3 1131 broad.mit.edu 37 1 240072588 240072588 + 3'UTR DEL A - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRM3 1131 broad.mit.edu;hgsc.bcm.edu 37 1 240071728 240071728 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRM3 1131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240070801 240070801 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRM4 1132 broad.mit.edu 37 11 46407571 46407571 + Silent SNP C A A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRM5 1133 broad.mit.edu 37 15 34355731 34355731 + Nonsense_Mutation SNP G A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRM5 1133 hgsc.bcm.edu;ucsc.edu 37 15 34356453 34356453 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA1 1134 broad.mit.edu 37 2 175612767 175612767 + 3'UTR SNP T A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx CHRNA1 1134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 175612868 175612868 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq CHRNA1 1134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 175614794 175614794 + Silent SNP A A G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNA1 1134 hgsc.bcm.edu;ucsc.edu 37 2 175614765 175614767 + In_Frame_Del DEL AAC AAC - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNA1 1134 hgsc.bcm.edu;ucsc.edu 37 2 175614777 175614777 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA2 1135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27321118 27321118 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNA2 1135 hgsc.bcm.edu;ucsc.edu 37 8 27319259 27319259 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA4 1137 hgsc.bcm.edu 37 20 61981763 61981763 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA4 1137 hgsc.bcm.edu 37 20 61987735 61987735 + Silent SNP T T C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA4 1137 hgsc.bcm.edu;ucsc.edu 37 20 61981905 61981905 + Silent SNP G G A rs121912257 bycluster TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA6 8973 broad.mit.edu 37 8 42608259 42608259 + 3'UTR SNP G T T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRNA6 8973 broad.mit.edu 37 8 42608268 42608268 + 3'UTR SNP A G G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRNA6 8973 hgsc.bcm.edu 37 8 42611309 42611309 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA6 8973 hgsc.bcm.edu;ucsc.edu 37 8 42611131 42611131 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA7 1139 broad.mit.edu 37 15 32449727 32449727 + Intron SNP A G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRNA7 1139 hgsc.bcm.edu 37 15 32449875 32449876 + Frame_Shift_Del DEL TG TG - rs67158670 bycluster;byfrequency TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNA9 55584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 40337469 40337469 + Splice_Site SNP G G C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CHRNA9 55584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 40356027 40356027 + Silent SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNA9 55584 hgsc.bcm.edu 37 4 40356041 40356041 + Missense_Mutation SNP C C T rs55633891 bycluster;byfrequency;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNB1 1140 hgsc.bcm.edu;ucsc.edu 37 17 7350241 7350245 + Frame_Shift_Del DEL TGACG TGACG - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 TGACG TGACG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNB2 1141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154543879 154543879 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNB2 1141 hgsc.bcm.edu;ucsc.edu 37 1 154544124 154544124 + Silent SNP G G A rs140739605 unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNB3 1142 broad.mit.edu 37 8 42591917 42591917 + 3'UTR SNP G A A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRNB4 1143 broad.mit.edu 37 15 78917389 78917389 + 3'UTR SNP G T T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRNB4 1143 broad.mit.edu 37 15 78917390 78917390 + 3'UTR SNP G A A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHRNB4 1143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78921969 78921969 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNB4 1143 hgsc.bcm.edu 37 15 78921843 78921843 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHRNB4 1143 hgsc.bcm.edu 37 15 78922214 78922215 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNB4 1143 hgsc.bcm.edu;ucsc.edu 37 15 78917593 78917593 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNB4 1143 hgsc.bcm.edu;ucsc.edu 37 15 78922278 78922278 + Silent SNP C C T novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHRNE 1145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4804298 4804298 + Silent SNP G G A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST10 9486 hgsc.bcm.edu;ucsc.edu 37 2 101009958 101009958 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHST11 50515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104851282 104851282 + Frame_Shift_Del DEL C C - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST12 55501 hgsc.bcm.edu;ucsc.edu 37 7 2473500 2473500 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST12(dist=41860) 0 hgsc.bcm.edu 37 7 2516076 2516076 + IGR SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST15 51363 broad.mit.edu 37 10 125768842 125768843 + 3'UTR DEL AG - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHST15 51363 hgsc.bcm.edu 37 10 125780753 125780753 + Frame_Shift_Del DEL G G - rs5788647 unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST15 51363 hgsc.bcm.edu 37 10 125780753 125780753 + Frame_Shift_Del DEL G G - rs5788647 unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST15 51363 hgsc.bcm.edu 37 10 125780753 125780754 + Frame_Shift_Del DEL GG GG - rs5788647 unknown;alternate_allele TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST15 51363 hgsc.bcm.edu 37 10 125780765 125780765 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST1 8534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45671655 45671655 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST4 10164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71570851 71570851 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST4 10164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71570904 71570904 + Silent SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST5 23563 hgsc.bcm.edu 37 16 75564068 75564068 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST6 4166 broad.mit.edu 37 16 75512296 75512297 + 3'UTR INS - C C rs11436257 bycluster;by1000genomes TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHST6 4166 broad.mit.edu 37 16 75512296 75512297 + 3'UTR INS - C C rs11436257 bycluster;by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHST7 56548 broad.mit.edu 37 X 46433704 46433704 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CHST8 64377 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34180166 34180166 + 5'UTR SNP G G A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST8 64377 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34263556 34263556 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST8 64377 hgsc.bcm.edu 37 19 34180263 34180263 + Silent SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHST9 83539 broad.mit.edu;hgsc.bcm.edu 37 18 24496333 24496333 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST9 83539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 24496329 24496329 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHST9 83539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 24496340 24496340 + Silent SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHSY1 22856 hgsc.bcm.edu 37 15 101717654 101717655 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHSY1 22856 hgsc.bcm.edu 37 15 101719144 101719144 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHSY1 22856 hgsc.bcm.edu;ucsc.edu 37 15 101717750 101717750 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHSY3 337876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129520380 129520380 + Silent SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHSY3 337876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129520692 129520692 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHSY3 337876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129520719 129520719 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CHSY3 337876 hgsc.bcm.edu 37 5 129520699 129520699 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CHUK 1147 hgsc.bcm.edu;ucsc.edu 37 10 101961883 101961883 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIAPIN1 57019 broad.mit.edu 37 16 57462928 57462928 + 3'UTR DEL C - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIAPIN1 57019 hgsc.bcm.edu 37 16 57468040 57468041 + Frame_Shift_Ins INS - - TACA novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIB3 117286 broad.mit.edu 37 19 16279070 16279070 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIB3 117286 hgsc.bcm.edu;ucsc.edu 37 19 16272259 16272259 + 3'UTR SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIB4 130106 broad.mit.edu;hgsc.bcm.edu 37 2 26806745 26806745 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIC 23152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42793535 42793535 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIC 23152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42797181 42797181 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIC 23152 hgsc.bcm.edu 37 19 42795826 42795827 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIC 23152 hgsc.bcm.edu;ucsc.edu 37 19 42791498 42791498 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIDEB 27141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24774973 24774973 + Splice_Site SNP T T C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIDEC 63924 hgsc.bcm.edu 37 3 9908860 9908860 + Silent SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIITA 4261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10997656 10997656 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIITA 4261 hgsc.bcm.edu 37 16 11001467 11001467 + Silent SNP G G A rs139717340 by1000genomes;alternate_allele TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIITA 4261 hgsc.bcm.edu;ucsc.edu 37 16 10997702 10997702 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CILP2 148113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19653420 19653420 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CILP 8483 broad.mit.edu 37 15 65488855 65488855 + 3'UTR SNP T G G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CILP 8483 broad.mit.edu;hgsc.bcm.edu 37 15 65499201 65499201 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CILP 8483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65499358 65499358 + Silent SNP G G T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CILP 8483 hgsc.bcm.edu 37 15 65490723 65490723 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CILP 8483 hgsc.bcm.edu;ucsc.edu 37 15 65489590 65489590 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIRBP 1153 broad.mit.edu 37 19 1271824 1271824 + Intron SNP T G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIRBP 1153 broad.mit.edu 37 19 1271824 1271824 + Intron SNP T G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIRBP 1153 broad.mit.edu 37 19 1271824 1271824 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIRBP 1153 broad.mit.edu 37 19 1271824 1271824 + Intron SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIRBP 1153 hgsc.bcm.edu;ucsc.edu 37 19 1272453 1272453 + 3'UTR SNP T T C novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIRH1A 84916 broad.mit.edu 37 16 69200826 69200826 + Intron SNP C A A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIRH1A 84916 broad.mit.edu;hgsc.bcm.edu 37 16 69177074 69177074 + Intron SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIRH1A 84916 broad.mit.edu;hgsc.bcm.edu 37 16 69200939 69200939 + Intron SNP A A T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIRH1A 84916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69199288 69199288 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIRH1A 84916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69199341 69199341 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIRH1A 84916 hgsc.bcm.edu 37 16 69184578 69184578 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIT 11113 broad.mit.edu 37 12 120128175 120128175 + Silent SNP G A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIT 11113 broad.mit.edu 37 12 120151395 120151395 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CIT 11113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120196473 120196473 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CIT 11113 hgsc.bcm.edu 37 12 120189889 120189889 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CIT 11113 hgsc.bcm.edu;ucsc.edu 37 12 120173115 120173115 + Missense_Mutation SNP G G T rs79892909 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CIT 11113 hgsc.bcm.edu;ucsc.edu 37 12 120241113 120241113 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CIZ1 25792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130938657 130938657 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CKAP2 26586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 53035798 53035798 + Silent SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CKAP2L 150468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 113509843 113509843 + Splice_Site SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CKAP2L 150468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 113514506 113514506 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CKAP4 10970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 106633704 106633704 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CKAP5 9793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46782199 46782199 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CKAP5 9793 hgsc.bcm.edu 37 11 46804895 46804895 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CKLF 51192 hgsc.bcm.edu 37 16 66599818 66599818 + Silent SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CKS2 1164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 91931300 91931300 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP1 23332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122168512 122168512 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP1 23332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122206531 122206531 + Silent SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP1 23332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122273322 122273322 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP1 23332 hgsc.bcm.edu 37 2 122184950 122184950 + Intron SNP C C A rs72967386 bycluster;by1000genomes TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLASP1 23332 hgsc.bcm.edu;ucsc.edu 37 2 122185037 122185037 + Intron SNP C C A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP2 23122 broad.mit.edu 37 3 33540105 33540105 + 3'UTR SNP T G G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLASP2 23122 broad.mit.edu;hgsc.bcm.edu 37 3 33643976 33643976 + Intron SNP A A T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP2 23122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33648252 33648252 + Splice_Site SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP2 23122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33725901 33725901 + Silent SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASP2 23122 hgsc.bcm.edu 37 3 33638234 33638234 + Splice_Region SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLASRP 11129 hgsc.bcm.edu 37 19 45571279 45571280 + Frame_Shift_Ins INS - - C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLASRP 11129 hgsc.bcm.edu;ucsc.edu 37 19 45573757 45573757 + Intron SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA1 1179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86947888 86947888 + Silent SNP A A G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA1 1179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86957042 86957042 + Silent SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA2 9635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86913358 86913358 + Silent SNP T T C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA3P 9629 hgsc.bcm.edu;ucsc.edu 37 1 87104605 87104605 + RNA SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA4 22802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87025997 87025997 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA4 22802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87031612 87031612 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA4 22802 hgsc.bcm.edu 37 1 87045902 87045902 + Silent SNP A A T rs1932809 bycluster;byfrequency TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCA4 22802 hgsc.bcm.edu 37 1 87045908 87045908 + Silent SNP T T A rs77594462 unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCC1 23155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109477333 109477333 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCC1 23155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109482394 109482394 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCF1 23529 hgsc.bcm.edu;ucsc.edu 37 11 67135087 67135089 + In_Frame_Del DEL CCA CCA - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN1 1180 hgsc.bcm.edu;ucsc.edu 37 7 143020428 143020428 + Silent SNP C C A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN1 1180 hgsc.bcm.edu;ucsc.edu 37 7 143048913 143048913 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN2 1181 broad.mit.edu 37 3 184073108 184073108 + Intron SNP T G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCN2 1181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184064449 184064449 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN2 1181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184079226 184079226 + Silent SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN2 1181 broad.mit.edu;ucsc.edu 37 3 184070571 184070571 + Missense_Mutation SNP A G G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCN2 1181 hgsc.bcm.edu 37 3 184064478 184064479 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLCN2 1181 hgsc.bcm.edu 37 3 184071131 184071132 + In_Frame_Ins INS - - CGG novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN2 1181 hgsc.bcm.edu 37 3 184071131 184071132 + In_Frame_Ins INS - - CGG novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN3 1182 hgsc.bcm.edu 37 4 170611793 170611793 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLCN3 1182 hgsc.bcm.edu;ucsc.edu 37 4 170618812 170618815 + Frame_Shift_Del DEL ATTC ATTC - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 ATTC ATTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN4 1183 broad.mit.edu 37 X 10202053 10202053 + 3'UTR DEL A - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCN4 1183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 10176319 10176319 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN4 1183 hgsc.bcm.edu;ucsc.edu 37 X 10180545 10180545 + Silent SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN5 1184 broad.mit.edu 37 X 49775291 49775291 + Intron SNP A C C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCN5 1184 broad.mit.edu 37 X 49857053 49857053 + 3'UTR DEL T - - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCN5 1184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49840554 49840554 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN5 1184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49851500 49851500 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN5 1184 hgsc.bcm.edu;ucsc.edu 37 X 49807586 49807586 + Intron SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN5 1184 hgsc.bcm.edu;ucsc.edu 37 X 49853520 49853520 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLCN6 1185 broad.mit.edu;hgsc.bcm.edu 37 1 11876724 11876724 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN6 1185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11876723 11876723 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN6 1185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11894362 11894362 + Silent SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN6 1185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11896171 11896171 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN6 1185 broad.mit.edu;ucsc.edu 37 1 11894635 11894635 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCN6 1185 hgsc.bcm.edu;ucsc.edu 37 1 11894064 11894064 + Silent SNP T T C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLCN6 1185 hgsc.bcm.edu;ucsc.edu 37 1 11896157 11896157 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLCN7 1186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1509163 1509163 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN7 1186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1510843 1510843 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCN7 1186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1515299 1515299 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCNKA 1187 broad.mit.edu 37 1 16360190 16360190 + 3'UTR SNP A C C rs77290444 bycluster TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCNKA 1187 broad.mit.edu 37 1 16360323 16360323 + 3'UTR SNP G T T rs80126492 byfrequency TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCNKA 1187 broad.mit.edu 37 1 16360323 16360323 + 3'UTR SNP G T T rs80126492 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCNKA 1187 broad.mit.edu 37 1 16360347 16360347 + 3'UTR SNP A G G rs76515451 unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLCNKA 1187 broad.mit.edu;hgsc.bcm.edu 37 1 16353083 16353083 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCNKA 1187 hgsc.bcm.edu 37 1 16356522 16356522 + Missense_Mutation SNP A A G rs71587743 unknown;alternate_allele TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLCNKA 1187 hgsc.bcm.edu 37 1 16360190 16360190 + 3'UTR SNP A A C rs77290444 bycluster TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLCNKB 1188 hgsc.bcm.edu;ucsc.edu 37 1 16377066 16377067 + Frame_Shift_Ins INS - - A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN10 9071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 96086287 96086287 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN10 9071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 96230215 96230215 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN12 9069 broad.mit.edu;hgsc.bcm.edu 37 7 90041973 90041973 + 5'UTR SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN12 9069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 90042424 90042424 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN14 23562 hgsc.bcm.edu;ucsc.edu 37 21 37833694 37833694 + Silent SNP G G A rs113350364 bycluster;byfrequency;by1000genomes TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN15 24146 hgsc.bcm.edu;ucsc.edu 37 7 100877732 100877732 + Intron SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN16 10686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 190106143 190106143 + Missense_Mutation SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN18 51208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 137717737 137717737 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN19 149461 broad.mit.edu 37 1 43200901 43200901 + Intron SNP C T T rs143708479 by1000genomes TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLDN19 149461 broad.mit.edu 37 1 43200962 43200962 + Intron SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLDN2 9075 hgsc.bcm.edu 37 X 106171625 106171625 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLDN2 9075 hgsc.bcm.edu;ucsc.edu 37 X 106171559 106171559 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLDN3 1365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73183930 73183930 + Silent SNP C C G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN4 1364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73245666 73245666 + Silent SNP C C T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN4 1364 broad.mit.edu;ucsc.edu 37 7 73246086 73246086 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLDN4 1364 hgsc.bcm.edu 37 7 73245846 73245846 + Silent SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLDN6 9074 broad.mit.edu;hgsc.bcm.edu 37 16 3065984 3065984 + Silent SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLDN7 1366 broad.mit.edu 37 17 7163812 7163812 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLDN9 9080 hgsc.bcm.edu 37 16 3063371 3063371 + Missense_Mutation SNP C C T rs144730563 unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLDND1 56650 hgsc.bcm.edu;ucsc.edu 37 3 98240229 98240229 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLDND2 125875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51870775 51870775 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC10A 10462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6981408 6981408 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC11A 6320 broad.mit.edu;hgsc.bcm.edu 37 19 51228703 51228703 + Silent SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC12A 160364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10124190 10124190 + 5'UTR SNP T T A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC12A 160364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10132016 10132016 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC12A 160364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10132045 10132045 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC12A 160364 hgsc.bcm.edu;ucsc.edu 37 12 10131627 10131627 + Silent SNP C C T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLEC12B(dist=2541) 0 hgsc.bcm.edu;ucsc.edu 37 12 10173940 10173940 + IGR SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC14A 161198 hgsc.bcm.edu 37 14 38723784 38723784 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLEC16A 23274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11217730 11217730 + Silent SNP C C G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC16A 23274 hgsc.bcm.edu 37 16 11260328 11260343 + Frame_Shift_Del DEL AGCGGCAGCGGGAGCA AGCGGCAGCGGGAGCA - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 AGCGGCAGCGGGAGCA AGCGGCAGCGGGAGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC18B 497190 broad.mit.edu 37 16 74442881 74442881 + 3'UTR SNP C G G rs710960 byfrequency TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18B 497190 broad.mit.edu 37 16 74444509 74444509 + Missense_Mutation SNP T A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18B 497190 broad.mit.edu 37 16 74445808 74445808 + Intron SNP T C C rs2650553 unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18B 497190 broad.mit.edu 37 16 74445808 74445808 + Intron SNP T C C rs2650553 unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18B 497190 broad.mit.edu 37 16 74445808 74445808 + Intron SNP T C C rs2650553 unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18B 497190 broad.mit.edu 37 16 74455087 74455087 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18C 283971 broad.mit.edu 37 16 70010432 70010432 + Intron SNP G T T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18C 283971 broad.mit.edu 37 16 70064913 70064913 + Intron SNP G C C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18C 283971 broad.mit.edu 37 16 70072983 70072984 + Intron INS - T T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC18C 283971 broad.mit.edu 37 16 70072984 70072984 + Intron DEL T - - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC1A 51267 hgsc.bcm.edu 37 12 10225998 10225998 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLEC2D 29121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9822375 9822375 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC2L 154790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139225199 139225199 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC2L 154790 broad.mit.edu;ucsc.edu 37 7 139221070 139221070 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC2L 154790 hgsc.bcm.edu 37 7 139221824 139221824 + Intron SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLEC4C 170482 broad.mit.edu 37 12 7882078 7882078 + 3'UTR SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC4C 170482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7890118 7890118 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC4D 338339 broad.mit.edu 37 12 8674037 8674038 + 3'UTR DEL TG - - rs138070495 bycluster;by1000genomes TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC4M 10332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7833849 7833849 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLEC5A 23601 hgsc.bcm.edu;ucsc.edu 37 7 141635627 141635627 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLEC7A 64581 broad.mit.edu 37 12 10277799 10277799 + Intron SNP G A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC7A 64581 broad.mit.edu 37 12 10277799 10277799 + Intron SNP G A A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLEC9A 283420 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10217396 10217396 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLECL1 160365 broad.mit.edu 37 12 9875113 9875113 + 3'UTR SNP C A A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLGN 1047 broad.mit.edu;hgsc.bcm.edu 37 4 141321553 141321553 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLGN 1047 hgsc.bcm.edu 37 4 141321658 141321658 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLIC1 1192 broad.mit.edu 37 6 31704181 31704181 + 5'UTR SNP G C C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIC2 1193 broad.mit.edu;ucsc.edu 37 X 154563725 154563725 + Silent SNP C A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIC5 53405 broad.mit.edu 37 6 45869505 45869505 + 3'UTR DEL T - - rs34693687 bycluster;by1000genomes TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIC5 53405 hgsc.bcm.edu;ucsc.edu 37 6 45882075 45882076 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIC6 54102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 36081036 36081036 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIC6 54102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 36081084 36081084 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIC6 54102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 36081739 36081739 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLINT1 9685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 157232998 157232998 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLINT1 9685 hgsc.bcm.edu;ucsc.edu 37 5 157221900 157221900 + Intron SNP T T G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIP1 6249 broad.mit.edu 37 12 122812709 122812709 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIP1 6249 broad.mit.edu 37 12 122865038 122865038 + 5'UTR SNP G T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIP1 6249 broad.mit.edu 37 12 122865040 122865040 + 5'UTR SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIP1 6249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122826194 122826194 + Silent SNP T T G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIP1 6249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122831951 122831951 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIP1 6249 hgsc.bcm.edu 37 12 122845659 122845660 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIP1 6249 hgsc.bcm.edu;ucsc.edu 37 12 122812834 122812834 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLIP1 6249 hgsc.bcm.edu;ucsc.edu 37 12 122812845 122812845 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLIP2 7461 broad.mit.edu 37 7 73771615 73771615 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLIP2 7461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73790732 73790732 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLIP3 25999 hgsc.bcm.edu 37 19 36517553 36517553 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLIP4 79745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29383260 29383260 + Silent SNP C C T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK1 1195 broad.mit.edu 37 2 201724587 201724587 + Intron SNP T C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLK1 1195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201719363 201719363 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK1 1195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201721415 201721415 + Silent SNP T T C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK1 1195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201721535 201721535 + Splice_Site SNP C C A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK1 1195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201725966 201725966 + Missense_Mutation SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK1 1195 hgsc.bcm.edu 37 2 201718657 201718657 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLK2 1196 broad.mit.edu;ucsc.edu 37 1 155238498 155238498 + Splice_Site DEL C - - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLK2 1196 hgsc.bcm.edu;ucsc.edu 37 1 155240724 155240729 + In_Frame_Del DEL CCGGCT CCGGCT - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 CCGGCT CCGGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK3 1198 broad.mit.edu 37 15 74900704 74900704 + 5'Flank SNP C G G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLK4 57396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178050273 178050273 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLK4 57396 hgsc.bcm.edu;ucsc.edu 37 5 178045711 178045711 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLLU1OS 574016 broad.mit.edu 37 12 92818886 92818886 + Intron SNP T G G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLLU1OS 574016 broad.mit.edu 37 12 92819004 92819005 + Intron DEL TG - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLLU1OS 574016 hgsc.bcm.edu 37 12 92816354 92816354 + Silent SNP T T G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLMN 79789 broad.mit.edu 37 14 95657758 95657759 + 3'UTR INS - C C rs60112171 unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLMN 79789 broad.mit.edu 37 14 95657758 95657759 + 3'UTR INS - C C rs60112171 unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLMN 79789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95669872 95669872 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLMN 79789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95688029 95688029 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLMN 79789 hgsc.bcm.edu;ucsc.edu 37 14 95657993 95657993 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLN5 1203 hgsc.bcm.edu;ucsc.edu 37 13 77574785 77574785 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLN8 2055 broad.mit.edu;hgsc.bcm.edu 37 8 1728748 1728748 + 3'UTR SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLN8 2055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 1728612 1728612 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLN8 2055 broad.mit.edu;ucsc.edu 37 8 1728427 1728427 + Silent SNP C G G rs145929862 unknown;alternate_allele TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLN8 2055 broad.mit.edu;ucsc.edu 37 8 1728492 1728492 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLNS1A 1207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77348740 77348742 + In_Frame_Del DEL AAA AAA - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 AAA AAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLOCK 9575 broad.mit.edu;ucsc.edu 37 4 56314944 56314944 + Splice_Site SNP A G G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLOCK 9575 broad.mit.edu;ucsc.edu 37 4 56314945 56314945 + Splice_Site SNP C A A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLPB 81570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 72005414 72005414 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLPB 81570 broad.mit.edu;ucsc.edu 37 11 72012879 72012879 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLPB 81570 broad.mit.edu;ucsc.edu 37 11 72012970 72012970 + Silent SNP G A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLPTM1 1209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45465320 45465320 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLPTM1L 81037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1330417 1330417 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLPTM1L 81037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1331925 1331925 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLPX 10845 broad.mit.edu 37 15 65442904 65442904 + 3'UTR DEL T - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLPX 10845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65449219 65449219 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLPX 10845 hgsc.bcm.edu 37 15 65471324 65471324 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLRN1 7401 broad.mit.edu 37 3 150645593 150645593 + 3'UTR SNP T C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLRN1 7401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150659493 150659493 + Silent SNP G G T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLRN2 645104 broad.mit.edu 37 4 17516859 17516859 + 5'UTR SNP G C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLRN2 645104 hgsc.bcm.edu;ucsc.edu 37 4 17524535 17524535 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLRN3 119467 broad.mit.edu 37 10 129682164 129682164 + Intron SNP T C C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLRN3 119467 hgsc.bcm.edu;ucsc.edu 37 10 129676520 129676523 + Frame_Shift_Del DEL TATT TATT - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 TATT TATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLRN3 119467 hgsc.bcm.edu;ucsc.edu 37 10 129682022 129682023 + Frame_Shift_Ins INS - - TGCG novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLRN3 119467 hgsc.bcm.edu;ucsc.edu 37 10 129690978 129690978 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLSPN 63967 broad.mit.edu 37 1 36202022 36202022 + 3'UTR SNP A G G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLSPN 63967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36214086 36214086 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSPN 63967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36230187 36230187 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CLSPN 63967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36230877 36230877 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CLSPN 63967 hgsc.bcm.edu;ucsc.edu 37 1 36205125 36205125 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID CLSTN1 22883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9801267 9801267 + Silent SNP C C T rs149205224 unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSTN1 22883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9809930 9809930 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSTN2 64084 broad.mit.edu 37 3 140285644 140285645 + 3'UTR INS - TCTC TCTC rs10662926 bycluster;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLSTN2 64084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 140122627 140122627 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CLSTN2 64084 hgsc.bcm.edu 37 3 140140114 140140114 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLSTN2 64084 hgsc.bcm.edu 37 3 140281788 140281788 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLSTN2 64084 hgsc.bcm.edu;ucsc.edu 37 3 140282917 140282917 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID CLSTN3 9746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7288076 7288076 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSTN3 9746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7288077 7288077 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSTN3 9746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7301668 7301668 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSTN3 9746 broad.mit.edu;ucsc.edu 37 12 7295478 7295478 + Silent SNP G T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLSTN3 9746 hgsc.bcm.edu 37 12 7286184 7286184 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLSTN3 9746 hgsc.bcm.edu 37 12 7294659 7294659 + Intron SNP T T G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLSTN3 9746 hgsc.bcm.edu;ucsc.edu 37 12 7288128 7288128 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLSTN3 9746 hgsc.bcm.edu;ucsc.edu 37 12 7295471 7295472 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTA 1211 broad.mit.edu;hgsc.bcm.edu 37 9 36191051 36191051 + 5'UTR SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTC 1213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57733326 57733327 + Frame_Shift_Ins INS - - T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTC 1213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57737836 57737836 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTC 1213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57758814 57758814 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTC 1213 broad.mit.edu;ucsc.edu 37 17 57746161 57746161 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLTC 1213 broad.mit.edu;ucsc.edu 37 17 57754361 57754361 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CLTC 1213 hgsc.bcm.edu 37 17 57763101 57763101 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLTC 1213 hgsc.bcm.edu;ucsc.edu 37 17 57763155 57763155 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLTCL1 8218 broad.mit.edu;hgsc.bcm.edu 37 22 19184099 19184099 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTCL1 8218 broad.mit.edu;hgsc.bcm.edu 37 22 19210260 19210260 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTCL1 8218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 19175075 19175075 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLTCL1 8218 hgsc.bcm.edu 37 22 19220820 19220820 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLTCL1 8218 hgsc.bcm.edu 37 22 19241625 19241625 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLTCL1 8218 hgsc.bcm.edu;ucsc.edu 37 22 19175147 19175147 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLU 1191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27466547 27466547 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLUAP1 23059 hgsc.bcm.edu 37 16 3551067 3551067 + 5'UTR SNP T T C rs78552393 bycluster;byfrequency;by1000genomes TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLUAP1 23059 hgsc.bcm.edu 37 16 3580641 3580642 + Frame_Shift_Ins INS - - A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLUL1 27098 hgsc.bcm.edu 37 18 644931 644931 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLUL1 27098 hgsc.bcm.edu 37 18 644931 644931 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CLVS1 157807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 62212433 62212433 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLVS1 157807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 62212689 62212689 + Silent SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLVS1 157807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 62412012 62412012 + Splice_Site SNP A A T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLYBL 171425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100511253 100511253 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CLYBL 171425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100543598 100543598 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMA1 1215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24975760 24975760 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMBL 134147 broad.mit.edu 37 5 10280300 10280300 + 3'UTR DEL T - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CMBL 134147 hgsc.bcm.edu;ucsc.edu 37 5 10290761 10290761 + Silent SNP G G A rs146175625 bycluster;byfrequency;by1000genomes TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CMC1 152100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 28361101 28361101 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMIP 80790 broad.mit.edu 37 16 81712128 81712128 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CMKLR1 1240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108686307 108686307 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMTM1 113540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66612797 66612797 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMTM2 146225 hgsc.bcm.edu;ucsc.edu 37 16 66621879 66621879 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMTM3 123920 hgsc.bcm.edu 37 16 66646497 66646497 + Intron SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CMTM4 146223 broad.mit.edu 37 16 66650873 66650873 + 3'UTR DEL T - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CMTM4 146223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66670397 66670397 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMYA5 202333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79031276 79031276 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMYA5 202333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79031741 79031741 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CMYA5 202333 hgsc.bcm.edu 37 5 79030663 79030663 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CMYA5 202333 hgsc.bcm.edu;ucsc.edu 37 5 79026966 79026966 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CMYA5 202333 hgsc.bcm.edu;ucsc.edu 37 5 79031960 79031960 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNBD1 168975 hgsc.bcm.edu 37 8 88297032 88297032 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNBD1 168975 hgsc.bcm.edu;ucsc.edu 37 8 87878755 87878755 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNBP 7555 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128890023 128890023 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNDP1 84735 broad.mit.edu 37 18 72201786 72201786 + Translation_Start_Site SNP G A A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNDP1 84735 broad.mit.edu 37 18 72234669 72234669 + Splice_Site SNP G T T novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNDP1 84735 hgsc.bcm.edu;ucsc.edu 37 18 72234508 72234508 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNFN 84518 hgsc.bcm.edu 37 19 42893091 42893091 + Silent SNP G G A rs139046031 bycluster;byfrequency;by1000genomes TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGA1 1259 broad.mit.edu;hgsc.bcm.edu 37 4 47939840 47939840 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNGA1 1259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47944154 47944154 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNGA2 1260 broad.mit.edu;ucsc.edu 37 X 150912325 150912325 + Silent SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNGA3 1261 hgsc.bcm.edu 37 2 98994250 98994250 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGA3 1261 hgsc.bcm.edu 37 2 98994251 98994251 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGA3 1261 hgsc.bcm.edu 37 2 99013536 99013536 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGA3 1261 hgsc.bcm.edu;ucsc.edu 37 2 99013013 99013013 + Silent SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGA4 1262 broad.mit.edu 37 11 6263120 6263120 + Intron SNP G T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNGA4 1262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6262833 6262833 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNGA4 1262 hgsc.bcm.edu;ucsc.edu 37 11 6262905 6262905 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGB1 1258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57991272 57991272 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNGB1 1258 hgsc.bcm.edu 37 16 57951275 57951275 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGB3 54714 broad.mit.edu 37 8 87588236 87588236 + Missense_Mutation SNP T A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNGB3 54714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87591035 87591035 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNGB3 54714 hgsc.bcm.edu 37 8 87590984 87590984 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNGB3 54714 hgsc.bcm.edu;ucsc.edu 37 8 87683239 87683244 + In_Frame_Del DEL TCTTTG TCTTTG - novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 TCTTTG TCTTTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNIH 10175 hgsc.bcm.edu 37 14 54894562 54894562 + Splice_Region SNP G G A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNKSR1 10256 broad.mit.edu;hgsc.bcm.edu 37 1 26514973 26514973 + Silent SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNKSR1 10256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26513674 26513674 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNKSR1 10256 hgsc.bcm.edu 37 1 26510311 26510311 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNKSR2 22866 broad.mit.edu 37 X 21450761 21450761 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNKSR2 22866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 21667030 21667030 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNKSR3 154043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 154743778 154743778 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNN1 1264 broad.mit.edu 37 19 11650183 11650183 + Intron DEL C - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNN2 1265 hgsc.bcm.edu 37 19 1036169 1036169 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNN3 1266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 95368739 95368739 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNNM1 26507 broad.mit.edu;hgsc.bcm.edu 37 10 101151192 101151192 + Splice_Site SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNNM1 26507 broad.mit.edu;hgsc.bcm.edu 37 10 101151315 101151315 + 3'UTR SNP G G C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNNM2 54805 broad.mit.edu 37 10 104678907 104678909 + In_Frame_Del DEL CCG - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 CCG CCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNNM3 26505 broad.mit.edu 37 2 97493923 97493923 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNNM3 26505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97483238 97483238 + Silent SNP A A C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNNM3 26505 hgsc.bcm.edu 37 2 97492490 97492490 + Intron SNP C C G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNNM3 26505 hgsc.bcm.edu 37 2 97492548 97492548 + Intron SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNNM3 26505 hgsc.bcm.edu;ucsc.edu 37 2 97492576 97492576 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNNM4 26504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97427956 97427956 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNNM4 26504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97475200 97475200 + Silent SNP T T G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT10 25904 broad.mit.edu 37 3 32804524 32804524 + Intron SNP C A A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT10 25904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 32750281 32750281 + Silent SNP T T A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 broad.mit.edu 37 16 58577316 58577316 + Intron DEL A - - rs34232342 unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58555184 58555184 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58564211 58564211 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58571103 58571106 + Frame_Shift_Del DEL TACT TACT - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 TACT TACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58572759 58572763 + Frame_Shift_Del DEL GTAGC GTAGC - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 GTAGC GTAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58589212 58589212 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58594198 58594198 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 hgsc.bcm.edu 37 16 58577565 58577565 + Silent SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT1 23019 hgsc.bcm.edu 37 16 58589196 58589196 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT1 23019 hgsc.bcm.edu;ucsc.edu 37 16 58555162 58555168 + Frame_Shift_Del DEL AAGGTAA AAGGTAA - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 AAGGTAA AAGGTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT1 23019 hgsc.bcm.edu;ucsc.edu 37 16 58579383 58579385 + In_Frame_Del DEL GTA GTA - novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 GTA GTA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT1 23019 hgsc.bcm.edu;ucsc.edu 37 16 58585658 58585658 + Silent SNP A A T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT2 4848 broad.mit.edu 37 12 70747896 70747896 + 3'UTR DEL T - - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT2 4848 broad.mit.edu 37 12 70747896 70747896 + 3'UTR DEL T - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT2 4848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 70723321 70723321 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT2 4848 hgsc.bcm.edu 37 12 70747694 70747694 + Frame_Shift_Del DEL A A - rs35192504 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT3 4849 hgsc.bcm.edu 37 19 54646856 54646856 + Silent SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT3 4849 hgsc.bcm.edu 37 19 54649542 54649542 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT3 4849 hgsc.bcm.edu;ucsc.edu 37 19 54656179 54656179 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT4 4850 broad.mit.edu 37 7 135073410 135073410 + 3'UTR SNP G C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT4 4850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135080392 135080392 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT4 4850 hgsc.bcm.edu;ucsc.edu 37 7 135095315 135095315 + Silent SNP A A T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNOT4 4850 hgsc.bcm.edu;ucsc.edu 37 7 135098321 135098322 + Frame_Shift_Ins INS - - TT novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT6 57472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179994125 179994125 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT6 57472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179998388 179998388 + Missense_Mutation SNP G G C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNOT7 29883 broad.mit.edu 37 8 17088039 17088040 + 3'UTR INS - T T rs112850424 unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT7 29883 broad.mit.edu 37 8 17088040 17088040 + 3'UTR DEL T - - rs112850424 unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNOT8 9337 hgsc.bcm.edu;ucsc.edu 37 5 154254886 154254899 + Frame_Shift_Del DEL TGTGGGCGGCTCTA TGTGGGCGGCTCTA - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 TGTGGGCGGCTCTA TGTGGGCGGCTCTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNP 1267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40120540 40120540 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNPY2 10330 hgsc.bcm.edu;ucsc.edu 37 12 56705186 56705186 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNPY4 245812 broad.mit.edu 37 7 99722682 99722682 + 3'UTR DEL G - - rs150441722 bycluster;by1000genomes TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNPY4 245812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99722440 99722440 + Missense_Mutation SNP G G C rs187806620 by1000genomes;alternate_allele TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNR1 1268 hgsc.bcm.edu;ucsc.edu 37 6 88853921 88853921 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNR2 1269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24201824 24201824 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68520911 68520911 + 3'UTR SNP C A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu 37 2 68546472 68546472 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNRIP1 25927 broad.mit.edu;hgsc.bcm.edu 37 2 68544212 68544212 + Intron SNP G G C rs72904278 bycluster;byfrequency;by1000genomes TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNST 163882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246797267 246797267 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNST 163882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246810555 246810555 + Frame_Shift_Del DEL T T - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNST 163882 hgsc.bcm.edu;ucsc.edu 37 1 246810937 246810938 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTD1 124817 broad.mit.edu 37 17 40963557 40963557 + 3'UTR SNP T A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTFR 1271 broad.mit.edu 37 9 34581129 34581131 + 5'UTR DEL TCC - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTLN 54875 broad.mit.edu 37 9 17298419 17298419 + Intron SNP G T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTLN 54875 broad.mit.edu 37 9 17298453 17298453 + Intron SNP C A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTLN 54875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 17416024 17416024 + Nonsense_Mutation SNP T T A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTLN 54875 hgsc.bcm.edu;ucsc.edu 37 9 17394889 17394889 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTN1 1272 broad.mit.edu 37 12 41302164 41302164 + 5'UTR SNP T C C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTN1 1272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 41422971 41422971 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTN1 1272 hgsc.bcm.edu 37 12 41327530 41327530 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTN2 6900 broad.mit.edu 37 1 205042968 205042969 + 3'UTR DEL AG - - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTN2 6900 broad.mit.edu 37 1 205043281 205043281 + 3'UTR DEL G - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTN2 6900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205035032 205035032 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTN2 6900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205041696 205041696 + Silent SNP A A C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTN3 5067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 74474063 74474063 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTN5 53942 broad.mit.edu;hgsc.bcm.edu 37 11 100226891 100226891 + Silent SNP C C G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTN5 53942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 99942549 99942549 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTN5 53942 hgsc.bcm.edu;ucsc.edu 37 11 100211348 100211348 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTN6 27255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 1363473 1363473 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CNTN6 27255 hgsc.bcm.edu;ucsc.edu 37 3 1269542 1269542 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP1 8506 broad.mit.edu;hgsc.bcm.edu 37 17 40836243 40836243 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP1 8506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40844591 40844591 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP1 8506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40848118 40848118 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP1 8506 hgsc.bcm.edu 37 17 40839832 40839832 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP1 8506 hgsc.bcm.edu 37 17 40844515 40844515 + Splice_Site SNP A A T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP2 26047 broad.mit.edu 37 7 148112872 148112873 + 3'UTR INS - A A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTNAP2 26047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 146829477 146829477 + Silent SNP T T C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP2 26047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 146829512 146829512 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP2 26047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 147336210 147336210 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP2 26047 hgsc.bcm.edu;ucsc.edu 37 7 147092819 147092819 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP2 26047 hgsc.bcm.edu;ucsc.edu 37 7 147869410 147869410 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP3 79937 broad.mit.edu 37 9 39085772 39085772 + Missense_Mutation SNP A C C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTNAP3 79937 hgsc.bcm.edu 37 9 39103777 39103777 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP3 79937 hgsc.bcm.edu 37 9 39103796 39103796 + Silent SNP G G A rs145100345 byfrequency TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP3 79937 hgsc.bcm.edu 37 9 39149853 39149853 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP4 85445 broad.mit.edu 37 16 76486631 76486631 + Missense_Mutation SNP A C C rs150449060 unknown;alternate_allele TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTNAP4 85445 broad.mit.edu 37 16 76486631 76486631 + Missense_Mutation SNP A C C rs150449060 unknown;alternate_allele TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CNTNAP4 85445 broad.mit.edu;hgsc.bcm.edu 37 16 76495979 76495979 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP4 85445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 76481968 76481968 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP4 85445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 76501348 76501348 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CNTNAP4 85445 hgsc.bcm.edu 37 16 76509834 76509834 + Splice_Site SNP A A T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP4 85445 hgsc.bcm.edu;ucsc.edu 37 16 76482716 76482716 + Missense_Mutation SNP C C A rs139295295 by1000genomes;alternate_allele TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTNAP5 129684 hgsc.bcm.edu;ucsc.edu 37 2 125261996 125261996 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTROB 116840 hgsc.bcm.edu 37 17 7850944 7850944 + Silent SNP A A C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CNTROB 116840 hgsc.bcm.edu;ucsc.edu 37 17 7839782 7839782 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COASY 80347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40715086 40715086 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COASY 80347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40715165 40715165 + Silent SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBL 23242 broad.mit.edu 37 7 51098700 51098700 + Intron SNP A T T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COBL 23242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 51094361 51094361 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBL 23242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 51096089 51096089 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBL 23242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 51261213 51261213 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBL 23242 hgsc.bcm.edu 37 7 51095591 51095591 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COBL 23242 hgsc.bcm.edu 37 7 51096357 51096358 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBL 23242 hgsc.bcm.edu 37 7 51098568 51098570 + In_Frame_Del DEL TCT TCT - rs142060269 bycluster;by1000genomes TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COBLL1 22837 broad.mit.edu;hgsc.bcm.edu 37 2 165551129 165551129 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBLL1 22837 broad.mit.edu;hgsc.bcm.edu 37 2 165551694 165551694 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBLL1 22837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 165557144 165557144 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBLL1 22837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 165561492 165561492 + Missense_Mutation SNP G G A rs149060063 unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBLL1 22837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 165561493 165561493 + Silent SNP C C A rs138711091 byfrequency;alternate_allele TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COBLL1 22837 hgsc.bcm.edu 37 2 165560994 165560994 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COCH 1690 hgsc.bcm.edu 37 14 31358882 31358883 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COCH 1690 hgsc.bcm.edu;ucsc.edu 37 14 31348659 31348659 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COG1 9382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71197742 71197742 + Silent SNP T T C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG1 9382 hgsc.bcm.edu 37 17 71196785 71196785 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COG1 9382 hgsc.bcm.edu;ucsc.edu 37 17 71193163 71193163 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COG1 9382 hgsc.bcm.edu;ucsc.edu 37 17 71197678 71197678 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG2 22796 broad.mit.edu 37 1 230778244 230778244 + 5'UTR DEL C - - rs146943151 bycluster;by1000genomes TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COG3 83548 broad.mit.edu;hgsc.bcm.edu 37 13 46054427 46054427 + Splice_Site SNP T T C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG4 25839 broad.mit.edu 37 16 70542624 70542624 + Intron SNP T C C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COG4 25839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 70548368 70548368 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG4 25839 hgsc.bcm.edu;ucsc.edu 37 16 70546246 70546246 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COG5 10466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106888896 106888896 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG5 10466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106924166 106924166 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG5 10466 hgsc.bcm.edu;ucsc.edu 37 7 107021682 107021682 + Intron SNP T T G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG6 57511 broad.mit.edu 37 13 40325364 40325365 + 3'UTR INS - T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COG6 57511 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 40268842 40268842 + Silent SNP A A G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COG7 91949 hgsc.bcm.edu;ucsc.edu 37 16 23409386 23409386 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COG7 91949 hgsc.bcm.edu;ucsc.edu 37 16 23417539 23417539 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COG8 84342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69368915 69368915 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COIL 8161 hgsc.bcm.edu;ucsc.edu 37 17 55026814 55026814 + Intron SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL11A1 1301 broad.mit.edu;hgsc.bcm.edu 37 1 103405991 103405991 + Splice_Site SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL11A1 1301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 103355037 103355037 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL11A1 1301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 103468818 103468818 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL11A1 1301 broad.mit.edu;ucsc.edu 37 1 103404625 103404625 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL11A1 1301 broad.mit.edu;ucsc.edu 37 1 103444415 103444415 + Splice_Site SNP C A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL11A1 1301 hgsc.bcm.edu 37 1 103496778 103496778 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID COL11A1 1301 hgsc.bcm.edu 37 1 103548427 103548427 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL11A1 1301 hgsc.bcm.edu;ucsc.edu 37 1 103354185 103354185 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL11A1 1301 hgsc.bcm.edu;ucsc.edu 37 1 103354406 103354406 + Intron SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL11A1 1301 hgsc.bcm.edu;ucsc.edu 37 1 103427399 103427399 + Intron SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL11A1 1301 hgsc.bcm.edu;ucsc.edu 37 1 103428247 103428247 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID COL11A2 1302 broad.mit.edu;hgsc.bcm.edu 37 6 33140387 33140387 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL11A2 1302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33133477 33133477 + Silent SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL11A2 1302 hgsc.bcm.edu 37 6 33156155 33156155 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL12A1 1303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 75827250 75827250 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL12A1 1303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 75861721 75861721 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL12A1 1303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 75864169 75864169 + Silent SNP G G C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL12A1 1303 hgsc.bcm.edu;ucsc.edu 37 6 75796281 75796281 + Intron SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL13A1 1305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71692318 71692318 + Silent SNP A A T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL13A1 1305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71692319 71692319 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL13A1 1305 hgsc.bcm.edu;ucsc.edu 37 10 71681630 71681630 + Splice_Region SNP C C A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL14A1 7373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 121282409 121282409 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL14A1 7373 hgsc.bcm.edu;ucsc.edu 37 8 121259910 121259910 + Silent SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL15A1 1306 broad.mit.edu 37 9 101832245 101832245 + 3'UTR SNP A C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101765861 101765861 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101777786 101777786 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101817583 101817583 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101818627 101818627 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101824283 101824283 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101824284 101824284 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101829277 101829277 + Silent SNP T T G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL15A1 1306 hgsc.bcm.edu 37 9 101748184 101748184 + Silent SNP C C A rs7045978 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL15A1 1306 hgsc.bcm.edu 37 9 101777794 101777794 + Silent SNP A A C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL15A1 1306 hgsc.bcm.edu;ucsc.edu 37 9 101706385 101706385 + Intron SNP C C T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL15A1 1306 hgsc.bcm.edu;ucsc.edu 37 9 101759361 101759361 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL15A1 1306 hgsc.bcm.edu;ucsc.edu 37 9 101812049 101812049 + Intron SNP G G C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL16A1 1307 broad.mit.edu;hgsc.bcm.edu 37 1 32149718 32149718 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL16A1 1307 hgsc.bcm.edu 37 1 32146505 32146505 + Splice_Site SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL16A1 1307 hgsc.bcm.edu;ucsc.edu 37 1 32138105 32138105 + Splice_Site SNP T T A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL17A1 1308 hgsc.bcm.edu 37 10 105799341 105799341 + Intron SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL17A1 1308 hgsc.bcm.edu 37 10 105816869 105816895 + In_Frame_Del DEL GCCACCAACACCGCCACCTCCTCCACT GCCACCAACACCGCCACCTCCTCCACT - novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 GCCACCAACACCGCCACCTCCTCCACT GCCACCAACACCGCCACCTCCTCCACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL17A1 1308 hgsc.bcm.edu;ucsc.edu 37 10 105792654 105792654 + Intron SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL17A1 1308 hgsc.bcm.edu;ucsc.edu 37 10 105792704 105792704 + Silent SNP G G T rs143826232 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL17A1 1308 hgsc.bcm.edu;ucsc.edu 37 10 105815678 105815683 + In_Frame_Del DEL CCATGC CCATGC - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 CCATGC CCATGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL17A1 1308 hgsc.bcm.edu;ucsc.edu 37 10 105815754 105815755 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL17A1 1308 hgsc.bcm.edu;ucsc.edu 37 10 105830254 105830254 + Silent SNP G G T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL18A1 80781 broad.mit.edu 37 21 46933460 46933461 + 3'UTR INS - CA CA rs1063507 bycluster;byfrequency TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL18A1 80781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46912469 46912469 + Silent SNP G G A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL18A1 80781 hgsc.bcm.edu 37 21 46917019 46917019 + Intron SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL18A1 80781 hgsc.bcm.edu 37 21 46925141 46925149 + In_Frame_Del DEL GGCCCCCCA GGCCCCCCA - novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 GGCCCCCCA GGCCCCCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL19A1 1310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 70878567 70878567 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL19A1 1310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 70916883 70916883 + Missense_Mutation SNP G G T rs141812196 byfrequency;alternate_allele TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL19A1 1310 broad.mit.edu;ucsc.edu 37 6 70733567 70733567 + Nonsense_Mutation SNP G T T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL19A1 1310 hgsc.bcm.edu 37 6 70639451 70639451 + Silent SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL19A1 1310 hgsc.bcm.edu;ucsc.edu 37 6 70851837 70851837 + Intron SNP C C G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL19A1 1310 hgsc.bcm.edu;ucsc.edu 37 6 70852710 70852710 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL1A1 1277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48267076 48267076 + Silent SNP A A T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL1A1 1277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48272628 48272628 + Missense_Mutation SNP C C T rs72648328 unknown;alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL1A1 1277 broad.mit.edu;ucsc.edu 37 17 48266574 48266574 + Silent SNP A G G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94038888 94038888 + Missense_Mutation SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94050324 94050324 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94051214 94051214 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94055151 94055151 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94059617 94059617 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL1A2 1278 hgsc.bcm.edu;ucsc.edu 37 7 94040381 94040381 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL20A1 57642 hgsc.bcm.edu 37 20 61929274 61929274 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL21A1 81578 broad.mit.edu;hgsc.bcm.edu 37 6 55933843 55933843 + Splice_Site SNP C C A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL21A1 81578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56035909 56035909 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL21A1 81578 hgsc.bcm.edu;ucsc.edu 37 6 55939040 55939040 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL21A1 81578 hgsc.bcm.edu;ucsc.edu 37 6 55942327 55942327 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL22A1 169044 broad.mit.edu 37 8 139601386 139601386 + 3'UTR DEL A - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL22A1 169044 broad.mit.edu 37 8 139601386 139601386 + 3'UTR DEL A - - novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL22A1 169044 broad.mit.edu;hgsc.bcm.edu 37 8 139824101 139824101 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL22A1 169044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 139845296 139845296 + Silent SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL22A1 169044 broad.mit.edu;ucsc.edu 37 8 139825225 139825225 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL22A1 169044 hgsc.bcm.edu 37 8 139772480 139772480 + Intron SNP G G A rs73437386 bycluster;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL22A1 169044 hgsc.bcm.edu 37 8 139824126 139824127 + In_Frame_Ins INS - - GGTGGA novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL22A1 169044 hgsc.bcm.edu;ucsc.edu 37 8 139638478 139638482 + Frame_Shift_Del DEL TTCTT TTCTT - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 TTCTT TTCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL22A1 169044 hgsc.bcm.edu;ucsc.edu 37 8 139856316 139856316 + Intron SNP T T G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86289366 86289366 + Splice_Site SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86315055 86315055 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86362087 86362087 + Silent SNP T T G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86453338 86453338 + Splice_Site SNP C C A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86591208 86591208 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 broad.mit.edu;ucsc.edu 37 1 86252141 86252141 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL24A1 255631 hgsc.bcm.edu;ucsc.edu 37 1 86307741 86307741 + Intron SNP A A T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 hgsc.bcm.edu;ucsc.edu 37 1 86430689 86430689 + Intron SNP T T C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 hgsc.bcm.edu;ucsc.edu 37 1 86488699 86488699 + Intron SNP C C T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL24A1 255631 hgsc.bcm.edu;ucsc.edu 37 1 86591606 86591606 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL25A1 84570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109783657 109783657 + Silent SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL25A1 84570 hgsc.bcm.edu 37 4 109895725 109895725 + Intron SNP A A G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL25A1 84570 hgsc.bcm.edu 37 4 109895726 109895726 + Intron SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL25A1 84570 hgsc.bcm.edu 37 4 109895726 109895726 + Intron SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL25A1 84570 hgsc.bcm.edu;ucsc.edu 37 4 109790280 109790280 + Silent SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL25A1 84570 hgsc.bcm.edu;ucsc.edu 37 4 109810856 109810856 + Splice_Site SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL27A1 85301 broad.mit.edu 37 9 117069829 117069829 + Intron SNP C T T rs1265892 bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL27A1 85301 broad.mit.edu;hgsc.bcm.edu 37 9 116931616 116931616 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL27A1 85301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116999978 116999978 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL27A1 85301 hgsc.bcm.edu 37 9 117026664 117026664 + Silent SNP G G T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL27A1 85301 hgsc.bcm.edu 37 9 117051586 117051586 + Intron SNP C C G rs72762675 bycluster;by1000genomes TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL27A1 85301 hgsc.bcm.edu;ucsc.edu 37 9 116931547 116931547 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL27A1 85301 hgsc.bcm.edu;ucsc.edu 37 9 117053135 117053135 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL28A1 340267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 7398296 7398296 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL28A1 340267 hgsc.bcm.edu;ucsc.edu 37 7 7561514 7561514 + Intron SNP T T C novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL2A1 1280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48369167 48369167 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL2A1 1280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48376305 48376305 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL2A1 1280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48381066 48381066 + Missense_Mutation SNP C C G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL2A1 1280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48388230 48388230 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL2A1 1280 hgsc.bcm.edu;ucsc.edu 37 12 48379700 48379700 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL3A1 1281 hgsc.bcm.edu 37 2 189860859 189860859 + Silent SNP C C T rs141091206 unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL3A1 1281 hgsc.bcm.edu 37 2 189863429 189863429 + Silent SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL3A1 1281 hgsc.bcm.edu;ucsc.edu 37 2 189856440 189856440 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL3A1 1281 hgsc.bcm.edu;ucsc.edu 37 2 189856965 189856965 + Intron SNP T T A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL3A1 1281 hgsc.bcm.edu;ucsc.edu 37 2 189875056 189875056 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A1 1282 broad.mit.edu 37 13 110833684 110833684 + Silent SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A1 1282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 110835582 110835582 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A1 1282 hgsc.bcm.edu;ucsc.edu 37 13 110822087 110822087 + Silent SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A1 1282 hgsc.bcm.edu;ucsc.edu 37 13 110845263 110845263 + Splice_Region SNP A A T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A2 1284 broad.mit.edu 37 13 111125466 111125466 + Silent SNP T A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A2 1284 broad.mit.edu 37 13 111164629 111164630 + 3'UTR DEL AA - - rs142388022 unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A2 1284 broad.mit.edu 37 13 111164629 111164630 + 3'UTR DEL AA - - rs142388022 unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A2 1284 broad.mit.edu 37 13 111164629 111164630 + 3'UTR DEL AA - - rs142388022 unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A2 1284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111102707 111102707 + Silent SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A2 1284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111144511 111144511 + Silent SNP T T C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A2 1284 hgsc.bcm.edu 37 13 111156500 111156500 + Missense_Mutation SNP C C T rs139124960 unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A3 1285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228173652 228173652 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A3 1285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228176506 228176506 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A3 1285 hgsc.bcm.edu 37 2 228131178 228131178 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A3 1285 hgsc.bcm.edu;ucsc.edu 37 2 228163409 228163409 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A3BP 10087 hgsc.bcm.edu 37 5 74685443 74685443 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A4 1286 broad.mit.edu 37 2 227871978 227871978 + 3'UTR SNP T C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A4 1286 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227919340 227919340 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu 37 X 107683189 107683189 + 5'UTR DEL T - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A5 1287 broad.mit.edu;hgsc.bcm.edu 37 X 107849993 107849993 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107868987 107868987 + Silent SNP T T G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107909822 107909822 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107924995 107924995 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107929324 107929324 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107935977 107935977 + Splice_Site SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107938641 107938641 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A5 1287 hgsc.bcm.edu 37 X 107819127 107819127 + Intron SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A5 1287 hgsc.bcm.edu 37 X 107865065 107865065 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A5 1287 hgsc.bcm.edu 37 X 107923920 107923920 + Silent SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A5 1287 hgsc.bcm.edu;ucsc.edu 37 X 107930860 107930860 + Silent SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL4A6 1288 broad.mit.edu 37 X 107399432 107399432 + 3'UTR DEL A - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A6 1288 broad.mit.edu 37 X 107400258 107400258 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL4A6 1288 broad.mit.edu;hgsc.bcm.edu 37 X 107681171 107681171 + Splice_Site SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A6 1288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107431170 107431170 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A6 1288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107457373 107457373 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL4A6 1288 hgsc.bcm.edu;ucsc.edu 37 X 107420105 107420105 + Silent SNP C C T novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A1 1289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 137623935 137623935 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A1 1289 hgsc.bcm.edu 37 9 137659129 137659129 + Intron SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A1 1289 hgsc.bcm.edu 37 9 137660274 137660274 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A1 1289 hgsc.bcm.edu 37 9 137710827 137710827 + Intron SNP C C T rs186732287 by1000genomes TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A1 1289 hgsc.bcm.edu 37 9 137717654 137717654 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A1 1289 hgsc.bcm.edu;ucsc.edu 37 9 137690231 137690231 + Intron SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A1 1289 hgsc.bcm.edu;ucsc.edu 37 9 137714837 137714837 + Splice_Region SNP T T A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A2 1290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 189906379 189906379 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A2 1290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 189914113 189914113 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A2 1290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 189962055 189962055 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A2 1290 hgsc.bcm.edu;ucsc.edu 37 2 189925460 189925464 + Frame_Shift_Del DEL TCACC TCACC - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 TCACC TCACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A2 1290 hgsc.bcm.edu;ucsc.edu 37 2 189927663 189927663 + Intron SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A3 50509 broad.mit.edu 37 19 10073521 10073521 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL5A3 50509 broad.mit.edu 37 19 10116808 10116808 + Missense_Mutation SNP C T T rs144021089 byfrequency TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL5A3 50509 broad.mit.edu;hgsc.bcm.edu 37 19 10087919 10087919 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A3 50509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10071471 10071471 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A3 50509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10084433 10084433 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A3 50509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10090547 10090547 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A3 50509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10116391 10116391 + Splice_Site SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL5A3 50509 hgsc.bcm.edu 37 19 10071434 10071434 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A3 50509 hgsc.bcm.edu 37 19 10084460 10084460 + Missense_Mutation SNP A A G rs62638750 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A3 50509 hgsc.bcm.edu 37 19 10114740 10114740 + Missense_Mutation SNP T T A rs62104337 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL5A3 50509 hgsc.bcm.edu;ucsc.edu 37 19 10080071 10080072 + Frame_Shift_Ins INS - - GT novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A1 1291 broad.mit.edu 37 21 47409686 47409686 + Silent SNP G T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL6A1 1291 hgsc.bcm.edu 37 21 47409580 47409580 + Intron SNP C C A rs34495634 bycluster;byfrequency;by1000genomes TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A1 1291 hgsc.bcm.edu 37 21 47422537 47422537 + Silent SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A1 1291 hgsc.bcm.edu;ucsc.edu 37 21 47402547 47402549 + Frame_Shift_Del DEL GAC GAC - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 GAC GAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A1 1291 hgsc.bcm.edu;ucsc.edu 37 21 47420243 47420243 + Splice_Site SNP A A C novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A2 1292 broad.mit.edu;hgsc.bcm.edu 37 21 47531392 47531392 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL6A2 1292 broad.mit.edu;hgsc.bcm.edu 37 21 47545941 47545941 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A2 1292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47533975 47533975 + Nonsense_Mutation SNP C C A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL6A2 1292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47542435 47542435 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL6A2 1292 hgsc.bcm.edu 37 21 47532722 47532722 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A2 1292 hgsc.bcm.edu 37 21 47546390 47546390 + Intron SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A2 1292 hgsc.bcm.edu;ucsc.edu 37 21 47535843 47535843 + Intron SNP A A T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu 37 2 238280926 238280926 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238233406 238233406 + 3'UTR SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238233432 238233432 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238244811 238244811 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238249156 238249156 + Silent SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238249678 238249678 + Silent SNP A A C novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238249699 238249699 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238267874 238267874 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238277320 238277320 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238277415 238277415 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238280464 238280464 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238280964 238280964 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A3 1293 hgsc.bcm.edu 37 2 238243369 238243369 + Silent SNP G G A rs10201909 bycluster;byfrequency;by1000genomes TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A3 1293 hgsc.bcm.edu;ucsc.edu 37 2 238266441 238266441 + Intron SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A3 1293 hgsc.bcm.edu;ucsc.edu 37 2 238267174 238267174 + Missense_Mutation SNP C C T rs145561490 unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A5 256076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130098768 130098768 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A5 256076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130162331 130162331 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A5 256076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130174477 130174477 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A5 256076 hgsc.bcm.edu 37 3 130095639 130095639 + Silent SNP A A G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A5 256076 hgsc.bcm.edu;ucsc.edu 37 3 130124426 130124426 + Splice_Region SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A5 256076 hgsc.bcm.edu;ucsc.edu 37 3 130125150 130125150 + Silent SNP T T G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A6 131873 broad.mit.edu 37 3 130284103 130284103 + Silent SNP A G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COL6A6 131873 broad.mit.edu;hgsc.bcm.edu 37 3 130380932 130380932 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130283940 130283940 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130285927 130285927 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130289957 130289957 + Silent SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130293121 130293121 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130300741 130300741 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 hgsc.bcm.edu 37 3 130318620 130318621 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130286060 130286063 + Frame_Shift_Del DEL GAAA GAAA - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 GAAA GAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130287096 130287096 + Silent SNP C C T rs61730501 byfrequency;by1000genomes TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130289877 130289877 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130293169 130293169 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130300584 130300584 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130300711 130300711 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130394072 130394072 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL7A1 1294 broad.mit.edu 37 3 48609479 48609479 + Splice_Site SNP C T T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx COL7A1 1294 broad.mit.edu 37 3 48612153 48612153 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx COL7A1 1294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48607732 48607732 + Silent SNP G G A rs142651194 byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq COL7A1 1294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48626394 48626394 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL7A1 1294 hgsc.bcm.edu 37 3 48609842 48609842 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL7A1 1294 hgsc.bcm.edu 37 3 48619795 48619795 + Splice_Region SNP T T A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL7A1 1294 hgsc.bcm.edu 37 3 48623284 48623284 + Silent SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL8A1 1295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 99513362 99513362 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL8A2 1296 broad.mit.edu;hgsc.bcm.edu 37 1 36564618 36564618 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL8A2 1296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36563552 36563552 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL8A2 1296 hgsc.bcm.edu 37 1 36563461 36563462 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL9A1 1297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71004163 71004163 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL9A1 1297 hgsc.bcm.edu 37 6 70942325 70942325 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL9A1 1297 hgsc.bcm.edu;ucsc.edu 37 6 70942325 70942325 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL9A2 1298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40777201 40777201 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL9A2 1298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40777353 40777353 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COL9A2 1298 hgsc.bcm.edu 37 1 40776739 40776739 + Intron SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COL9A2 1298 hgsc.bcm.edu;ucsc.edu 37 1 40776390 40776390 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COLEC10 10584 broad.mit.edu;hgsc.bcm.edu 37 8 120101991 120101991 + Splice_Site SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COLEC10 10584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 120118232 120118232 + Silent SNP T T C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COLEC11 78989 broad.mit.edu 37 2 3665178 3665178 + Intron SNP T G G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COLEC11 78989 broad.mit.edu 37 2 3691463 3691463 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COLEC11 78989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3691555 3691555 + Silent SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COLEC12 81035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 346953 346953 + Silent SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COLEC12 81035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 480713 480713 + Silent SNP G G T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COMMD10 51397 hgsc.bcm.edu;ucsc.edu 37 5 115469775 115469775 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COMMD5 28991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 146076470 146076470 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COMMD6 170622 hgsc.bcm.edu 37 13 76101979 76101979 + Silent SNP G G A rs77512031 bycluster;byfrequency;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COMMD7 149951 broad.mit.edu 37 20 31291079 31291079 + 3'UTR SNP C T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COMMD7 149951 hgsc.bcm.edu 37 20 31292300 31292300 + Splice_Region SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COMMD7 149951 hgsc.bcm.edu;ucsc.edu 37 20 31291229 31291229 + Silent SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COMMD9 29099 broad.mit.edu 37 11 36298454 36298454 + Intron SNP T C C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COMMD9 29099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 36302301 36302301 + Silent SNP T T G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COMMD9 29099 hgsc.bcm.edu;ucsc.edu 37 11 36298648 36298648 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COMP 1311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18901411 18901411 + Silent SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COMP 1311 hgsc.bcm.edu 37 19 18893710 18893710 + 3'UTR SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COMT 1312 broad.mit.edu;ucsc.edu 37 22 19956115 19956115 + Silent SNP A G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COPA 1314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160261217 160261217 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPA 1314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160302290 160302290 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPA 1314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160310032 160310032 + Silent SNP C C A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPA 1314 hgsc.bcm.edu;ucsc.edu 37 1 160261203 160261203 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPA 1314 hgsc.bcm.edu;ucsc.edu 37 1 160267213 160267220 + Frame_Shift_Del DEL TCCTTTCT TCCTTTCT - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 TCCTTTCT TCCTTTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPB1 1315 hgsc.bcm.edu 37 11 14520433 14520433 + Silent SNP C C T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPB1 1315 hgsc.bcm.edu;ucsc.edu 37 11 14487933 14487933 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPB1 1315 hgsc.bcm.edu;ucsc.edu 37 11 14487935 14487935 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPB1 1315 hgsc.bcm.edu;ucsc.edu 37 11 14510041 14510041 + Nonsense_Mutation SNP A A C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPB2 9276 broad.mit.edu 37 3 139093141 139093143 + Intron DEL GAT - - rs62939960 bycluster;by1000genomes TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 GAT GAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COPB2 9276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 139077639 139077639 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPB2 9276 hgsc.bcm.edu 37 3 139085577 139085577 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPB2 9276 hgsc.bcm.edu;ucsc.edu 37 3 139090606 139090606 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPE 11316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19014155 19014155 + Silent SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPE 11316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19021795 19021795 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPG2 26958 broad.mit.edu;hgsc.bcm.edu 37 7 130149549 130149549 + Intron SNP C C A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPG2 26958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 130292326 130292326 + Intron SNP G G A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPG2 26958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 130295934 130295934 + Silent SNP A A G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPG2 26958 hgsc.bcm.edu 37 7 130148882 130148882 + Intron SNP A A C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPG 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128986841 128986841 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPS2 9318 broad.mit.edu 37 15 49423011 49423011 + Missense_Mutation SNP G T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COPS2 9318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49429387 49429387 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPS4 51138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83970374 83970374 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPS5 10987 broad.mit.edu 37 8 67972671 67972671 + Intron DEL A - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COPS5 10987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67970384 67970384 + Silent SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPS5 10987 hgsc.bcm.edu;ucsc.edu 37 8 67968826 67968826 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPS6 10980 hgsc.bcm.edu;ucsc.edu 37 7 99689085 99689086 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPS7A 50813 broad.mit.edu 37 12 6833732 6833732 + Intron SNP C A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COPS7A 50813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6837091 6837091 + Splice_Site SNP G G C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COPZ1 22818 hgsc.bcm.edu 37 12 54741560 54741560 + Silent SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COPZ2 51226 broad.mit.edu 37 17 46103760 46103760 + 3'UTR SNP A G G rs12051 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COQ10A 93058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56663289 56663289 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COQ10A 93058 hgsc.bcm.edu;ucsc.edu 37 12 56662982 56662982 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COQ5 84274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120954469 120954469 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COQ5 84274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120966769 120966769 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COQ6 51004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74420179 74420179 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COQ6 51004 hgsc.bcm.edu 37 14 74428169 74428169 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COQ9 57017 broad.mit.edu 37 16 57490689 57490689 + Intron SNP A T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COQ9 57017 broad.mit.edu;hgsc.bcm.edu 37 16 57490826 57490826 + Intron SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORIN 10699 broad.mit.edu 37 4 47597590 47597590 + 3'UTR SNP A G G rs3749585 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORIN 10699 broad.mit.edu 37 4 47685603 47685603 + Intron SNP C A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORIN 10699 broad.mit.edu 37 4 47840012 47840012 + 5'UTR SNP G T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORIN 10699 broad.mit.edu 37 4 47840013 47840013 + 5'UTR SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORIN 10699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47788855 47788855 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO1A 11151 broad.mit.edu 37 16 30199863 30199863 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORO1A 11151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30198495 30198495 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO1B 57175 broad.mit.edu 37 11 67209168 67209168 + Intron SNP G T T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORO1B 57175 hgsc.bcm.edu;ucsc.edu 37 11 67207622 67207622 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO2A 7464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100899899 100899899 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO2A 7464 hgsc.bcm.edu 37 9 100919886 100919887 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO2B 10391 broad.mit.edu 37 15 69020047 69020047 + 3'UTR DEL T - - rs71747415 unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORO2B 10391 broad.mit.edu 37 15 69020047 69020047 + 3'UTR DEL T - - rs71747415 unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CORO2B 10391 broad.mit.edu;hgsc.bcm.edu 37 15 69003112 69003112 + Silent SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO2B 10391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 69006276 69006276 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO7 79585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4405287 4405287 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO7 79585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4408461 4408461 + Silent SNP C C T rs151072609 unknown;alternate_allele TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CORO7 79585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4412076 4412076 + Silent SNP G G T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COTL1 23406 broad.mit.edu 37 16 84600669 84600669 + Intron SNP G C C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX10 1352 broad.mit.edu 37 17 14110669 14110669 + 3'UTR DEL T - - novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX10 1352 broad.mit.edu 37 17 14111361 14111362 + 3'UTR DEL CT - - rs10603407 bycluster;by1000genomes TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX10 1352 broad.mit.edu;hgsc.bcm.edu 37 17 13972886 13972886 + 5'UTR SNP A A T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COX11 1353 broad.mit.edu;hgsc.bcm.edu 37 17 53040153 53040153 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COX15 1355 hgsc.bcm.edu;ucsc.edu 37 10 101478155 101478155 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COX16 51241 broad.mit.edu 37 14 70793016 70793016 + 3'UTR DEL A - - rs71744102 unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX17 10063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119393997 119393997 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COX17 10063 hgsc.bcm.edu 37 3 119396048 119396048 + Intron SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COX18 285521 hgsc.bcm.edu;ucsc.edu 37 4 73927583 73927583 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COX19 90639 broad.mit.edu 37 7 1008554 1008554 + 3'UTR DEL T - - rs72201515 bycluster TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX19 90639 broad.mit.edu;ucsc.edu 37 7 1012903 1012903 + Missense_Mutation SNP T A A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX6A2 1339 broad.mit.edu 37 16 31439650 31439650 + 5'UTR SNP G T T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx COX6A2 1339 hgsc.bcm.edu;ucsc.edu 37 16 31439138 31439138 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COX6B1 1340 hgsc.bcm.edu;ucsc.edu 37 19 36142196 36142196 + Silent SNP T T C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COX6B1 1340 hgsc.bcm.edu;ucsc.edu 37 19 36142196 36142196 + Silent SNP T T C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COX6B2 125965 hgsc.bcm.edu;ucsc.edu 37 19 55865854 55865854 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COX7A2 1347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 75947673 75947673 + Silent SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq COX7A2 1347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 75950931 75950931 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID COX7B 1349 broad.mit.edu 37 X 77160816 77160816 + 3'UTR SNP A G G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CP 1356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 148928072 148928072 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPA2 1358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129906711 129906711 + 5'UTR SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPA2 1358 broad.mit.edu;ucsc.edu 37 7 129916502 129916502 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPA4 51200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129938646 129938646 + Silent SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPA6 57094 broad.mit.edu;hgsc.bcm.edu 37 8 68658368 68658368 + 5'UTR SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPA6 57094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68396051 68396051 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPAMD8 27151 broad.mit.edu 37 19 17119514 17119514 + Intron DEL A - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17003921 17003921 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17010350 17010350 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17039855 17039855 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17115085 17115085 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CPAMD8 27151 hgsc.bcm.edu 37 19 17086920 17086920 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPAMD8 27151 hgsc.bcm.edu 37 19 17104239 17104239 + Missense_Mutation SNP T T C rs151335087 by1000genomes TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPAMD8 27151 hgsc.bcm.edu 37 19 17113103 17113103 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPAMD8 27151 hgsc.bcm.edu;ucsc.edu 37 19 17068709 17068709 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID CPB1 1360 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 148559631 148559631 + Nonsense_Mutation SNP A A T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPD 1362 broad.mit.edu 37 17 28792067 28792072 + 3'UTR DEL CTTTTT - - rs72148018 bycluster;by1000genomes TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 CTTTTT CTTTTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPD 1362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 28750570 28750570 + Silent SNP G G C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPEB1 64506 broad.mit.edu 37 15 83215272 83215272 + Splice_Site SNP C A A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPEB1 64506 broad.mit.edu 37 15 83224911 83224911 + Intron SNP G A A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPEB1 64506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83221251 83221251 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPEB1 64506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83226709 83226709 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPEB4 80315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 173372085 173372085 + Silent SNP A A G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPEB4 80315 hgsc.bcm.edu;ucsc.edu 37 5 173316872 173316874 + In_Frame_Del DEL AAT AAT - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 AAT AAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPEB4 80315 hgsc.bcm.edu;ucsc.edu 37 5 173317715 173317715 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPLX1 10815 broad.mit.edu 37 4 780370 780370 + Silent SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPLX2 10814 broad.mit.edu 37 5 175306022 175306022 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPLX2 10814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 175306865 175306865 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPLX2 10814 hgsc.bcm.edu 37 5 175306957 175306957 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPNE1 8904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34219486 34219486 + Silent SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPNE1 8904 broad.mit.edu;ucsc.edu 37 20 34214664 34214664 + Missense_Mutation SNP T G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPNE1 8904 hgsc.bcm.edu 37 20 34219022 34219022 + Intron SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPNE3 8895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87568470 87568470 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPNE5 57699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36730739 36730739 + Silent SNP A A G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPNE5 57699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36742765 36742765 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPNE7 27132 broad.mit.edu 37 16 89657660 89657660 + Frame_Shift_Del DEL A - - novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPNE7 27132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89657453 89657453 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPNE7 27132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89657544 89657544 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPO 130749 broad.mit.edu 37 2 207820279 207820279 + Nonsense_Mutation SNP T A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPOX 1371 broad.mit.edu 37 3 98299342 98299342 + 3'UTR SNP T A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPOX 1371 hgsc.bcm.edu 37 3 98311863 98311863 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPPED1 55313 broad.mit.edu 37 16 12756049 12756049 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPPED1 55313 broad.mit.edu 37 16 12758696 12758696 + 3'UTR SNP A C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPPED1 55313 broad.mit.edu 37 16 12897744 12897745 + 5'UTR INS - GGGGCGGGACT GGGGCGGGACT rs3833561 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPS1 1373 broad.mit.edu;hgsc.bcm.edu 37 2 211421408 211421408 + 5'UTR SNP T T A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPS1 1373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 211441087 211441087 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPS1 1373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 211473212 211473212 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPS1 1373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 211476961 211476961 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPS1 1373 hgsc.bcm.edu 37 2 211421452 211421452 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPS1 1373 hgsc.bcm.edu;ucsc.edu 37 2 211518750 211518750 + Missense_Mutation SNP A A T rs1129684 unknown;alternate_allele TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPS1 1373 hgsc.bcm.edu;ucsc.edu 37 2 211521332 211521332 + Silent SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPS1 1373 hgsc.bcm.edu;ucsc.edu 37 2 211541841 211541841 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPSF1 29894 broad.mit.edu 37 8 145626349 145626349 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPSF1 29894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145623927 145623927 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF1 29894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145634429 145634429 + Silent SNP G G C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF1 29894 hgsc.bcm.edu 37 8 145623274 145623274 + Silent SNP C C A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF1 29894 hgsc.bcm.edu 37 8 145623779 145623779 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPSF2 53981 hgsc.bcm.edu;ucsc.edu 37 14 92604675 92604675 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPSF2 53981 hgsc.bcm.edu;ucsc.edu 37 14 92624218 92624218 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPSF3 51692 broad.mit.edu 37 2 9563880 9563880 + 5'UTR SNP C A A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPSF3 51692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9580730 9580730 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF3 51692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9588441 9588441 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF3L 54973 broad.mit.edu 37 1 1255404 1255404 + Intron DEL G - - rs142417634 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPSF3L 54973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1249171 1249171 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF3L 54973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1250912 1250912 + Silent SNP A A C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF4 10898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99045873 99045873 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF4 10898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99047957 99047957 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF6 11052 hgsc.bcm.edu;ucsc.edu 37 12 69644959 69644959 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CPSF7 79869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61183665 61183665 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPSF7 79869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61188976 61188976 + Silent SNP A A C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPT1A 1374 broad.mit.edu 37 11 68522400 68522400 + 3'UTR SNP C T T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPT1A 1374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68575043 68575043 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPT1C 126129 broad.mit.edu 37 19 50213761 50213761 + Intron SNP C A A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPXCR1 53336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 88009260 88009260 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPXM1 56265 broad.mit.edu 37 20 2779142 2779142 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPXM1 56265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2775211 2775211 + Silent SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPXM1 56265 broad.mit.edu;ucsc.edu 37 20 2777900 2777900 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPXM2 119587 broad.mit.edu 37 10 125651046 125651046 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPXM2 119587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 125526488 125526488 + Splice_Site SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CPZ 8532 broad.mit.edu;ucsc.edu 37 4 8609117 8609117 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CPZ 8532 hgsc.bcm.edu;ucsc.edu 37 4 8613867 8613867 + Silent SNP G G A rs2302573 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 broad.mit.edu;hgsc.bcm.edu 37 1 207700214 207700214 + Missense_Mutation SNP G G C rs56395307 unknown;alternate_allele TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 broad.mit.edu;hgsc.bcm.edu 37 1 207790124 207790124 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207685001 207685001 + Splice_Site SNP T T A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207758216 207758216 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207785153 207785153 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 hgsc.bcm.edu;ucsc.edu 37 1 207753683 207753683 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CR1 1378 hgsc.bcm.edu;ucsc.edu 37 1 207791580 207791580 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CR2 1380 hgsc.bcm.edu 37 1 207644230 207644230 + Silent SNP G G T novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CR2 1380 hgsc.bcm.edu;ucsc.edu 37 1 207651381 207651381 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRAMP1L 57585 broad.mit.edu 37 16 1706867 1706867 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRAMP1L 57585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1682305 1682305 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRAMP1L 57585 hgsc.bcm.edu 37 16 1706435 1706435 + Silent SNP C C T rs61739874 bycluster;byfrequency;by1000genomes TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRAT 1384 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131864768 131864768 + Nonsense_Mutation SNP G G A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197390735 197390735 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197404477 197404477 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197411309 197411309 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197446956 197446956 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRB1 23418 hgsc.bcm.edu;ucsc.edu 37 1 197390461 197390461 + Silent SNP G G C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRB1 23418 hgsc.bcm.edu;ucsc.edu 37 1 197396821 197396821 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRB1 23418 hgsc.bcm.edu;ucsc.edu 37 1 197396890 197396890 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRCP 27297 hgsc.bcm.edu 37 7 65610418 65610418 + Intron SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CREB1 1385 broad.mit.edu;hgsc.bcm.edu 37 2 208461841 208461841 + 3'UTR SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREB3 10488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35736114 35736114 + Silent SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREB3 10488 broad.mit.edu;ucsc.edu 37 9 35736669 35736669 + Silent SNP A G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREB3L1 90993 hgsc.bcm.edu 37 11 46332690 46332690 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CREB3L2 64764 broad.mit.edu 37 7 137597645 137597645 + Intron SNP C T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREB3L2 64764 hgsc.bcm.edu;ucsc.edu 37 7 137593138 137593138 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREB3L3 84699 hgsc.bcm.edu 37 19 4157198 4157199 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREB3L4 148327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153946103 153946103 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREB5 9586 broad.mit.edu 37 7 28610069 28610069 + Silent SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREB5 9586 broad.mit.edu 37 7 28859060 28859061 + 3'UTR INS - T T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREBBP 1387 broad.mit.edu 37 16 3777576 3777576 + 3'UTR SNP G A A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREBBP 1387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3843626 3843626 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREBBP 1387 broad.mit.edu;ucsc.edu 37 16 3860701 3860701 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREBBP 1387 hgsc.bcm.edu 37 16 3807365 3807365 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CREBBP 1387 hgsc.bcm.edu 37 16 3820642 3820642 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CREBL2 1389 hgsc.bcm.edu;ucsc.edu 37 12 12794957 12794957 + 3'UTR SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CREBZF 58487 broad.mit.edu;ucsc.edu 37 11 85374911 85374911 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CREG2 200407 hgsc.bcm.edu;ucsc.edu 37 2 102000000 102000000 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRELD1 78987 broad.mit.edu;hgsc.bcm.edu 37 3 9982650 9982650 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRELD1 78987 hgsc.bcm.edu 37 3 9984520 9984520 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRELD2 79174 hgsc.bcm.edu 37 22 50312869 50312869 + Intron SNP T T C rs28562884 bycluster;byfrequency;by1000genomes TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRELD2 79174 hgsc.bcm.edu 37 22 50315936 50315973 + Frame_Shift_Del DEL CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRELD2 79174 hgsc.bcm.edu 37 22 50315936 50315973 + Frame_Shift_Del DEL CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CREM 1390 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 35495906 35495906 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRHBP 1393 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 76249908 76249908 + Missense_Mutation SNP C C T rs79810800 unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRHR1 1394 broad.mit.edu 37 17 43912267 43912268 + 3'UTR INS - G G rs112691859 unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRHR2 1395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 30701795 30701795 + Silent SNP G G T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRHR2 1395 hgsc.bcm.edu;ucsc.edu 37 7 30706864 30706864 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRIM1 51232 broad.mit.edu 37 2 36776050 36776050 + 3'UTR DEL T - - rs11309348 bycluster;byfrequency TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRIP3 401262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43276136 43276136 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIP3 401262 hgsc.bcm.edu;ucsc.edu 37 6 43273854 43273855 + Frame_Shift_Ins INS - - C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 broad.mit.edu;hgsc.bcm.edu 37 4 1389122 1389122 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 broad.mit.edu;ucsc.edu 37 4 1388536 1388536 + Silent SNP G A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRIPAK 285464 hgsc.bcm.edu 37 4 1388350 1388350 + Silent SNP G G A rs77782813 bycluster;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRIPAK 285464 hgsc.bcm.edu 37 4 1388429 1388429 + Missense_Mutation SNP G G A rs79298048 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRIPAK 285464 hgsc.bcm.edu 37 4 1388500 1388500 + Silent SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1388622 1388623 + Frame_Shift_Ins INS - - CA novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1388622 1388623 + Frame_Shift_Ins INS - - CA novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1388693 1388693 + Missense_Mutation SNP C C G rs78906219 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1389054 1389055 + Frame_Shift_Ins INS - - CA novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1389076 1389076 + Silent SNP C C T rs113118213 bycluster;byfrequency TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1389097 1389097 + Missense_Mutation SNP G G A rs74651473 bycluster;byfrequency TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1389101 1389101 + Missense_Mutation SNP A A G rs71614971 bycluster;byfrequency;by1000genomes TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRIPAK 285464 hgsc.bcm.edu 37 4 1389125 1389125 + Missense_Mutation SNP T T C rs146490783 byfrequency TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRISP1 167 broad.mit.edu;ucsc.edu 37 6 49819726 49819726 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRISP2 7180 broad.mit.edu 37 6 49660289 49660289 + 3'UTR SNP T C C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRISP2 7180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49667553 49667553 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRISP3 10321 hgsc.bcm.edu;ucsc.edu 37 6 49696473 49696473 + Silent SNP G G T rs488132 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRISPLD1 83690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 75937789 75937789 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRISPLD1 83690 broad.mit.edu;ucsc.edu 37 8 75927084 75927084 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRISPLD1 83690 hgsc.bcm.edu 37 8 75924705 75924705 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRISPLD2 83716 hgsc.bcm.edu 37 16 84907504 84907504 + Intron SNP T T G novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRK 1398 broad.mit.edu 37 17 1326699 1326700 + 3'UTR INS - A A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRK 1398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1326915 1326915 + Silent SNP A A G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRLF2(dist=39239) 0 hgsc.bcm.edu 37 X 1370769 1370769 + IGR SNP G G C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRLF2(dist=39249) 0 hgsc.bcm.edu 37 X 1370779 1370779 + IGR SNP C C T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRMP1 1400 hgsc.bcm.edu 37 4 5827342 5827342 + Silent SNP A A T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRNN 49860 hgsc.bcm.edu 37 1 152384629 152384629 + Silent SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRNN 49860 hgsc.bcm.edu 37 1 152384629 152384629 + Silent SNP C C T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CROCC 9696 broad.mit.edu 37 1 17271891 17271891 + Intron SNP C T T rs2781606 bycluster;by2hit2allele TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCC 9696 broad.mit.edu 37 1 17299014 17299014 + 3'UTR DEL A - - novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCC 9696 broad.mit.edu 37 1 17299014 17299014 + 3'UTR DEL A - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCC 9696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17256695 17256695 + Missense_Mutation SNP G G A rs140045815 byfrequency TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CROCC 9696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17264218 17264218 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CROCC 9696 hgsc.bcm.edu 37 1 17275337 17275337 + Missense_Mutation SNP C C T rs143866013 byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CROCC 9696 hgsc.bcm.edu 37 1 17275382 17275382 + Missense_Mutation SNP G G A rs146639503 unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CROCC 9696 hgsc.bcm.edu 37 1 17295771 17295771 + Missense_Mutation SNP G G A rs139786167 bycluster;byfrequency;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CROCCL1 0 broad.mit.edu 37 1 16944979 16944981 + RNA DEL AAG - - rs142983965 unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16944979 16944981 + RNA DEL AAG - - rs142983965 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16945236 16945239 + RNA DEL TTAT - - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 TTAT TTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16945409 16945409 + RNA SNP T A A rs13566 bycluster;byfrequency;by2hit2allele TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16945628 16945628 + Intron SNP G C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946407 16946407 + RNA SNP T G G rs10796418 bycluster;by2hit2allele;byhapmap TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946437 16946437 + RNA SNP C T T rs2262202 by2hit2allele;alternate_allele TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946437 16946437 + RNA SNP C T T rs2262202 by2hit2allele;alternate_allele TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946438 16946438 + RNA SNP G A A rs28392876 bycluster;byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946438 16946438 + RNA SNP G A A rs28392876 bycluster;byfrequency TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16946438 16946438 + RNA SNP G A A rs28392876 bycluster;byfrequency TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16952952 16952952 + RNA SNP G A A rs1762946 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16956534 16956534 + Intron SNP C T T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16956555 16956555 + Intron SNP C T T rs9329440 bycluster;byfrequency;by2hit2allele TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16956555 16956555 + Intron SNP C T T rs9329440 bycluster;byfrequency;by2hit2allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16956899 16956899 + Intron DEL C - - novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16958060 16958060 + Intron SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16959646 16959646 + Intron SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16959732 16959733 + Intron INS - GGGCCTGCAGCA GGGCCTGCAGCA rs112000683 unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16959803 16959803 + 5'Flank SNP G A A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16969277 16969277 + Intron SNP G T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16972068 16972068 + 5'Flank SNP A G G rs78492841 bycluster;byfrequency TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16972134 16972134 + 5'Flank SNP C T T rs4661404 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16973606 16973606 + 5'Flank SNP G T T rs76859932 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL1 0 broad.mit.edu 37 1 16973784 16973784 + 5'Flank SNP C T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL2 0 broad.mit.edu 37 1 16802965 16802965 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL2 0 broad.mit.edu 37 1 16803474 16803474 + 5'UTR SNP C T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CROCCL2 0 broad.mit.edu 37 1 16812113 16812113 + RNA SNP G A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRP 1401 broad.mit.edu 37 1 159682250 159682251 + 3'UTR DEL GC - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRTAC1 55118 broad.mit.edu 37 10 99655168 99655168 + Silent SNP G A A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRTAC1 55118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99640010 99640010 + Silent SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRTAC1 55118 broad.mit.edu;ucsc.edu 37 10 99664546 99664546 + Silent SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRTAC1 55118 hgsc.bcm.edu 37 10 99642574 99642574 + Silent SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRTAC1 55118 hgsc.bcm.edu 37 10 99683108 99683108 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRTAC1 55118 hgsc.bcm.edu;ucsc.edu 37 10 99771036 99771037 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRTAM 56253 hgsc.bcm.edu;ucsc.edu 37 11 122733210 122733210 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRTC1 23373 broad.mit.edu 37 19 18856654 18856654 + Silent SNP C T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRTC1 23373 broad.mit.edu;hgsc.bcm.edu 37 19 18886547 18886547 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRY1 1407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 107393578 107393578 + Silent SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYAA 1409 hgsc.bcm.edu;ucsc.edu 37 21 44589294 44589294 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRYAB 1410 broad.mit.edu 37 11 111780950 111780950 + Intron SNP G T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRYAB 1410 broad.mit.edu;hgsc.bcm.edu 37 11 111779431 111779431 + 3'UTR SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYAB 1410 broad.mit.edu;hgsc.bcm.edu 37 11 111782457 111782457 + 5'UTR SNP G G T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYBB1 1414 hgsc.bcm.edu 37 22 27012238 27012239 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYBB2 1415 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 25617408 25617408 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRYBB3 1417 broad.mit.edu;hgsc.bcm.edu 37 22 25597349 25597349 + 5'UTR SNP G G T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYBB3 1417 hgsc.bcm.edu;ucsc.edu 37 22 25597418 25597418 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRYBG3 131544 hgsc.bcm.edu;ucsc.edu 37 3 97617751 97617751 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRYGA 1418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209025594 209025594 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYGA 1418 hgsc.bcm.edu;ucsc.edu 37 2 209028271 209028271 + Splice_Site SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CRYGB 1419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209007477 209007477 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYGB 1419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209007637 209007637 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYGS 1427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186256604 186256604 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYGS 1427 broad.mit.edu;ucsc.edu 37 3 186262113 186262113 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRYL1 51084 broad.mit.edu 37 13 20978192 20978192 + 3'UTR SNP G T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRYL1 51084 broad.mit.edu;hgsc.bcm.edu 37 13 20978266 20978266 + 3'UTR SNP A A G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYL1 51084 broad.mit.edu;hgsc.bcm.edu 37 13 21006205 21006205 + Intron SNP G G T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYL1 51084 broad.mit.edu;ucsc.edu 37 13 21063530 21063530 + Silent SNP T C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRYM 1428 broad.mit.edu 37 16 21269906 21269906 + 3'UTR SNP G A A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CRYM 1428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21272606 21272606 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CRYZ 1429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 75172631 75172631 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CS 1431 broad.mit.edu;hgsc.bcm.edu 37 12 56669791 56669791 + Silent SNP G G A rs146737473 unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CS 1431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56668847 56668847 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CS 1431 hgsc.bcm.edu 37 12 56676232 56676232 + Missense_Mutation SNP T T C rs77708038 bycluster TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSAD 51380 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53566220 53566220 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSAG1 158511 broad.mit.edu 37 X 151909301 151909301 + 3'UTR SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSAG1 158511 broad.mit.edu 37 X 151909357 151909357 + 3'UTR SNP G C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSAG1 158511 broad.mit.edu 37 X 151909357 151909357 + 3'UTR SNP G C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSAG1 158511 broad.mit.edu;hgsc.bcm.edu 37 X 151909172 151909172 + Silent SNP C C A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSAG1 158511 hgsc.bcm.edu;ucsc.edu 37 X 151908814 151908814 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSAG2 728461 hgsc.bcm.edu 37 X 151928438 151928438 + 3'UTR SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSDA 8531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10854562 10854562 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSDA 8531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10865871 10865871 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSDA 8531 hgsc.bcm.edu 37 12 10862578 10862579 + Frame_Shift_Ins INS - - C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSDAP1 440359 broad.mit.edu 37 16 31579714 31579714 + 3'UTR SNP A T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSDE1 7812 broad.mit.edu 37 1 115260583 115260583 + 3'UTR SNP T C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSDE1 7812 hgsc.bcm.edu 37 1 115276689 115276689 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSE1L 1434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47682942 47682942 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSE1L 1434 hgsc.bcm.edu;ucsc.edu 37 20 47707554 47707554 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF1R 1436 broad.mit.edu 37 5 149456746 149456746 + Intron SNP C A A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSF1R 1436 broad.mit.edu;hgsc.bcm.edu 37 5 149449864 149449864 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSF1R 1436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149449521 149449521 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSF1R 1436 hgsc.bcm.edu 37 5 149436911 149436911 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF1R 1436 hgsc.bcm.edu 37 5 149447888 149447888 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF1R 1436 hgsc.bcm.edu 37 5 149453042 149453042 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF2RA 1438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1413322 1413322 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSF2RA 1438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1422842 1422842 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSF2RA 1438 hgsc.bcm.edu 37 X 1407729 1407729 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF2RA 1438 hgsc.bcm.edu 37 X 1409284 1409284 + Silent SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF2RB 1439 hgsc.bcm.edu 37 22 37334375 37334375 + Missense_Mutation SNP C C T rs147019788 unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF2RB 1439 hgsc.bcm.edu;ucsc.edu 37 22 37326520 37326520 + Silent SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSF3R 1441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36931800 36931800 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSF3R 1441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36932909 36932909 + Silent SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSF3R 1441 broad.mit.edu;ucsc.edu 37 1 36939104 36939104 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSGALNACT1 55790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 19297429 19297429 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSGALNACT1 55790 hgsc.bcm.edu 37 8 19263531 19263531 + Silent SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSGALNACT1 55790 hgsc.bcm.edu 37 8 19263574 19263574 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSGALNACT1 55790 hgsc.bcm.edu 37 8 19297338 19297338 + Splice_Region SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSGALNACT1 55790 hgsc.bcm.edu;ucsc.edu 37 8 19263569 19263569 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSGALNACT2 55454 hgsc.bcm.edu;ucsc.edu 37 10 43654206 43654207 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSH1 1442 broad.mit.edu;hgsc.bcm.edu 37 17 61973929 61973929 + 5'UTR SNP A A T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSK 1445 broad.mit.edu;hgsc.bcm.edu 37 15 75091783 75091783 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSK 1445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75092775 75092775 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD1 64478 broad.mit.edu 37 8 3245041 3245041 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 2818703 2818703 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 3253877 3253877 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 3566004 3566004 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 4495044 4495044 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD1 64478 hgsc.bcm.edu 37 8 3265496 3265496 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD1 64478 hgsc.bcm.edu 37 8 3265502 3265502 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD1 64478 hgsc.bcm.edu;ucsc.edu 37 8 2808659 2808659 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G G T G G Unknown Unknown Somatic Phase_I Capture 454 SOLID CSMD1 64478 hgsc.bcm.edu;ucsc.edu 37 8 3046465 3046465 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID CSMD1 64478 hgsc.bcm.edu;ucsc.edu 37 8 3046472 3046472 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID CSMD1 64478 hgsc.bcm.edu;ucsc.edu 37 8 3141831 3141831 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD2 114784 broad.mit.edu;hgsc.bcm.edu 37 1 34180251 34180251 + Silent SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD2 114784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 34033301 34033301 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD2 114784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 34052715 34052715 + Missense_Mutation SNP C C T rs143826784 unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD2 114784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 34238249 34238249 + Silent SNP G G A rs142181378 unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD2 114784 broad.mit.edu;ucsc.edu 37 1 34189862 34189862 + Missense_Mutation SNP C A A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSMD2 114784 hgsc.bcm.edu 37 1 34083218 34083218 + Splice_Site SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD2 114784 hgsc.bcm.edu 37 1 34191120 34191120 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD2 114784 hgsc.bcm.edu 37 1 34312501 34312501 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD2 114784 hgsc.bcm.edu;ucsc.edu 37 1 34102927 34102927 + Intron SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD2 114784 hgsc.bcm.edu;ucsc.edu 37 1 34166201 34166201 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSMD2 114784 hgsc.bcm.edu;ucsc.edu 37 1 34286089 34286091 + In_Frame_Del DEL TTT TTT - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 TTT TTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu 37 8 113246594 113246594 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu 37 8 113421242 113421242 + Silent SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113243821 113243821 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113277723 113277723 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113301593 113301593 + Splice_Site SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113323219 113323219 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113347652 113347652 + Silent SNP G G T rs113449703 unknown;alternate_allele TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113349913 113349913 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113358405 113358405 + Silent SNP C C A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113392679 113392679 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113529433 113529433 + Missense_Mutation SNP C C T rs138068999 unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113650949 113650949 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 114448936 114448936 + Missense_Mutation SNP C C A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CSMD3 114788 broad.mit.edu;ucsc.edu 37 8 113237062 113237062 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSMD3 114788 hgsc.bcm.edu;ucsc.edu 37 8 113326746 113326746 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID CSN1S1 1446 broad.mit.edu 37 4 70812163 70812163 + 3'UTR DEL T - - rs139563918 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSN1S1 1446 broad.mit.edu 37 4 70812163 70812163 + 3'UTR DEL T - - rs139563918 unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSN2 1447 hgsc.bcm.edu 37 4 70824692 70824692 + Intron SNP A A T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSNK1A1 1452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148904678 148904678 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSNK1A1L 122011 broad.mit.edu 37 13 37679428 37679428 + 5'UTR SNP T G G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSNK1A1L 122011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37678647 37678647 + Silent SNP A A G novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSNK1A1L 122011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37679100 37679100 + Silent SNP T T C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSNK1G1 53944 hgsc.bcm.edu;ucsc.edu 37 15 64472640 64472641 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSNK1G2 1455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1980183 1980183 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSNK1G3 1456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122911473 122911473 + Silent SNP A A G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSNK1G3 1456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122923847 122923847 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSNK2A2 1459 hgsc.bcm.edu;ucsc.edu 37 16 58220677 58220677 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSNK2B 1460 broad.mit.edu 37 6 31635959 31635961 + Intron DEL TAT - - rs34561980 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 TAT TAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSNK2B 1460 broad.mit.edu 37 6 31635959 31635961 + Intron DEL TAT - - rs34561980 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 TAT TAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSNK2B 1460 broad.mit.edu 37 6 31635964 31635967 + Intron DEL CAAA - - rs34161953 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CAAA CAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSNK2B 1460 hgsc.bcm.edu 37 6 31637658 31637659 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPG4 1464 broad.mit.edu 37 15 75967625 75967625 + 3'UTR DEL C - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSPG4 1464 broad.mit.edu 37 15 75981976 75981976 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSPG4 1464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75977757 75977757 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPG4 1464 hgsc.bcm.edu 37 15 75981842 75981854 + Frame_Shift_Del DEL CCTCCAGCACCAG CCTCCAGCACCAG - novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 CCTCCAGCACCAG CCTCCAGCACCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPG4 1464 hgsc.bcm.edu 37 15 75982085 75982085 + Missense_Mutation SNP C C T rs79463888 unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPG4 1464 hgsc.bcm.edu 37 15 75982360 75982360 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPP1 79848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68007701 68007701 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPP1 79848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68084731 68084731 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSPP1 79848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68107615 68107615 + Splice_Site SNP A A G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSRNP1 64651 broad.mit.edu;ucsc.edu 37 3 39185098 39185098 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSRNP1 64651 hgsc.bcm.edu 37 3 39184799 39184799 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSRP2BP 57325 broad.mit.edu;hgsc.bcm.edu 37 20 18123411 18123411 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSRP2BP 57325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 18125954 18125954 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSRP2BP 57325 hgsc.bcm.edu;ucsc.edu 37 20 18163922 18163922 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSRP3 8048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19213960 19213960 + Silent SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSRP3 8048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19213973 19213973 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CST11 140880 hgsc.bcm.edu;ucsc.edu 37 20 23432483 23432484 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CST2 1470 broad.mit.edu 37 20 23804525 23804525 + 3'UTR SNP G A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CST4 1472 broad.mit.edu;hgsc.bcm.edu 37 20 23666496 23666496 + 3'UTR SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CST6 1474 broad.mit.edu 37 11 65780703 65780703 + Intron SNP G A A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSTF2 1478 hgsc.bcm.edu 37 X 100088269 100088269 + Silent SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CSTF2T 23283 broad.mit.edu 37 10 53457289 53457289 + 3'UTR DEL A - - rs139403403 bycluster;by1000genomes TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSTF2T 23283 broad.mit.edu 37 10 53457289 53457289 + 3'UTR DEL A - - rs139403403 bycluster;by1000genomes TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSTF2T 23283 broad.mit.edu 37 10 53457289 53457289 + 3'UTR DEL A - - rs139403403 bycluster;by1000genomes TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CSTF2T 23283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 53458229 53458229 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSTF3 1479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33108666 33108666 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSTF3 1479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33123767 33123767 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CSTF3 1479 hgsc.bcm.edu;ucsc.edu 37 11 33127147 33127147 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CT47A6 728062 hgsc.bcm.edu 37 X 120094375 120094375 + Silent SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CT47B1 643311 broad.mit.edu 37 X 120009111 120009111 + Missense_Mutation SNP G T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CT47B1 643311 broad.mit.edu 37 X 120009345 120009345 + Silent SNP G T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CT47B1 643311 broad.mit.edu 37 X 120009353 120009353 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CT47B1 643311 hgsc.bcm.edu 37 X 120008791 120008791 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CT47B1 643311 hgsc.bcm.edu;ucsc.edu 37 X 120009118 120009118 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CT62 196993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 71403498 71403498 + Silent SNP T T G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTAGE10P(dist=11669) 0 hgsc.bcm.edu;ucsc.edu 37 13 50479185 50479185 + IGR SNP T T C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTAGE1 64693 broad.mit.edu 37 18 19995469 19995469 + 3'UTR SNP C T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTAGE1 64693 broad.mit.edu;hgsc.bcm.edu 37 18 19996969 19996969 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTAGE1 64693 hgsc.bcm.edu;ucsc.edu 37 18 19996490 19996491 + Frame_Shift_Ins INS - - T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTAGE4 100128553 broad.mit.edu 37 7 143883003 143883003 + 3'UTR DEL G - - novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTAGE5 4253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 39763224 39763224 + Silent SNP G G A rs141828907 unknown;alternate_allele TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTAGE5 4253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 39782629 39782629 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTAGE5 4253 hgsc.bcm.edu 37 14 39783949 39783949 + Silent SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTAGE6 0 broad.mit.edu 37 7 143453714 143453714 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTAGE9 643854 hgsc.bcm.edu 37 6 132032041 132032041 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTBP1 1487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1206792 1206792 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTBP2 1488 broad.mit.edu;hgsc.bcm.edu 37 10 126683133 126683133 + Silent SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTBP2 1488 hgsc.bcm.edu 37 10 126682443 126682443 + Missense_Mutation SNP G G T rs76582415 bycluster TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTBS 1486 broad.mit.edu 37 1 85039999 85040007 + In_Frame_Del DEL GCAGCGCCA - - rs142534762 bycluster;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GCAGCGCCA GCAGCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTCF 10664 broad.mit.edu 37 16 67672222 67672222 + 3'UTR DEL T - - rs11325766 unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTCF 10664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67660544 67660544 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTCF 10664 hgsc.bcm.edu;ucsc.edu 37 16 67644949 67644949 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTCFL 140690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56089655 56089655 + Silent SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTCFL 140690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56090853 56090853 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTCFL 140690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56099123 56099123 + Silent SNP A A G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDNEP1 23399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7147938 7147938 + Silent SNP G G T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDP1 9150 broad.mit.edu 37 18 77477956 77477956 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTDP1 9150 broad.mit.edu;hgsc.bcm.edu 37 18 77475251 77475251 + Silent SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDP1 9150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 77477938 77477938 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDP1 9150 hgsc.bcm.edu 37 18 77475187 77475188 + In_Frame_Ins INS - - GGA rs35893234 bycluster;by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDP1 9150 hgsc.bcm.edu;ucsc.edu 37 18 77488985 77488985 + Silent SNP T T A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDSP2 10106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58217389 58217389 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDSP2 10106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58220853 58220853 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDSPL2 51496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44751276 44751276 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTDSPL2 51496 broad.mit.edu;ucsc.edu 37 15 44776439 44776439 + Silent SNP T G G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTGF 1490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132270523 132270523 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTH 1491 broad.mit.edu 37 1 70877012 70877014 + 5'UTR DEL CTT - - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTH 1491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70896063 70896063 + Missense_Mutation SNP G G A rs147044875 unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNNA1 1495 broad.mit.edu 37 5 138269835 138269835 + 3'UTR SNP C T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTNNA1 1495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138147874 138147874 + Silent SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNNA1 1495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138163310 138163310 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNNA1 1495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138269640 138269640 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNNA1 1495 broad.mit.edu;ucsc.edu 37 5 138261073 138261073 + Silent SNP A C C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTNNA2 1496 broad.mit.edu 37 2 80136761 80136761 + Silent SNP G A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80097056 80097056 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80136837 80136837 + Silent SNP C C A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80136882 80136882 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80782891 80782891 + Silent SNP G G T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80874879 80874879 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNNA2 1496 hgsc.bcm.edu;ucsc.edu 37 2 80101323 80101323 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID CTNNA3 29119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 68139003 68139003 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNNA3 29119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 68940123 68940123 + Silent SNP G G A rs146754105 unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNNA3 29119 hgsc.bcm.edu;ucsc.edu 37 10 67726369 67726369 + Splice_Site SNP C C A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTNNB1 1499 broad.mit.edu 37 3 41277009 41277009 + Intron DEL G - - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTNNB1 1499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 41275110 41275110 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CTNND1 1500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57563067 57563067 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNND1 1500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57571149 57571149 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNND1 1500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57573353 57573353 + Splice_Site SNP G G A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNND1 1500 broad.mit.edu;ucsc.edu 37 11 57573944 57573944 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTNND2 1501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 10988319 10988319 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNND2 1501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 11018139 11018139 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNND2 1501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 11346669 11346676 + Frame_Shift_Del DEL GGCATTCT GGCATTCT - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 GGCATTCT GGCATTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNND2 1501 hgsc.bcm.edu;ucsc.edu 37 5 10988302 10988303 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNS 1497 broad.mit.edu;hgsc.bcm.edu 37 17 3563891 3563891 + 3'UTR SNP C C G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNS 1497 broad.mit.edu;hgsc.bcm.edu 37 17 3563892 3563892 + 3'UTR SNP G G A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTNS 1497 broad.mit.edu;ucsc.edu 37 17 3563239 3563239 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTPS 0 hgsc.bcm.edu 37 1 41471734 41471734 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTR9 9646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 10785039 10785039 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTR9 9646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 10785191 10785191 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTR9 9646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 10789686 10789686 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTRB2 440387 hgsc.bcm.edu 37 16 75241033 75241033 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTRC 11330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 15771156 15771156 + Silent SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSA 5476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44521907 44521907 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSB 1508 broad.mit.edu 37 8 11702542 11702542 + 3'UTR SNP T C C rs8898 bycluster;byfrequency;by1000genomes TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTSB 1508 broad.mit.edu;hgsc.bcm.edu 37 8 11706684 11706684 + Intron SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSB 1508 broad.mit.edu;hgsc.bcm.edu 37 8 11706685 11706685 + Intron SNP A A G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSB 1508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11703216 11703216 + Silent SNP G G T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSB 1508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11703250 11703250 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSB 1508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11710155 11710155 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSB 1508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11710851 11710851 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSC 1075 broad.mit.edu 37 11 88055042 88055042 + Intron DEL C - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTSE 1510 broad.mit.edu 37 1 206331351 206331351 + 3'UTR SNP C T T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTSE 1510 broad.mit.edu;hgsc.bcm.edu 37 1 206325277 206325277 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSE 1510 hgsc.bcm.edu;ucsc.edu 37 1 206320203 206320203 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSG 1511 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 25043508 25043508 + Silent SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSH 1512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79227327 79227327 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSK 1513 broad.mit.edu;hgsc.bcm.edu 37 1 150769266 150769266 + 3'UTR SNP T T C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSK 1513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150778608 150778608 + Nonsense_Mutation SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSL1 1514 broad.mit.edu;hgsc.bcm.edu 37 9 90343025 90343026 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSL1 1514 hgsc.bcm.edu 37 9 90344590 90344590 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTSL3 0 broad.mit.edu;hgsc.bcm.edu 37 9 90387883 90387883 + RNA SNP C C A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSS 1520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150724283 150724283 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSW 1521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65648930 65648930 + Missense_Mutation SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTSW 1521 hgsc.bcm.edu 37 11 65650835 65650835 + Silent SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTTN 2017 broad.mit.edu 37 11 70281357 70281359 + 3'UTR DEL CTG - - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTTN 2017 broad.mit.edu 37 11 70281360 70281360 + 3'UTR DEL T - - rs71463677 unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CTTNBP2 83992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117417736 117417736 + Silent SNP A A T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTTNBP2 83992 hgsc.bcm.edu 37 7 117431331 117431331 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTTNBP2(dist=153664) 0 hgsc.bcm.edu 37 7 117667225 117667225 + IGR SNP G G T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTTNBP2NL 55917 hgsc.bcm.edu;ucsc.edu 37 1 112997122 112997122 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTU2 348180 hgsc.bcm.edu 37 16 88780635 88780640 + Frame_Shift_Del DEL GGTGTG GGTGTG - rs11278302 unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 GGTGTG GGTGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTU2 348180 hgsc.bcm.edu 37 16 88781504 88781504 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CTXN2 399697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48493508 48493508 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CTXN3 613212 broad.mit.edu 37 5 126993520 126993520 + 3'UTR SNP C A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUBN 8029 broad.mit.edu 37 10 16919092 16919092 + Silent SNP A G G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUBN 8029 broad.mit.edu 37 10 16949733 16949733 + Intron SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUBN 8029 broad.mit.edu;hgsc.bcm.edu 37 10 16882524 16882524 + Silent SNP A A G novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A A G A A Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16911671 16911671 + Missense_Mutation SNP C C G rs148491916 unknown;alternate_allele TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16957110 16957110 + Silent SNP A A G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16979763 16979763 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17110165 17110165 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17110704 17110704 + Silent SNP T T G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17151661 17151661 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CUBN 8029 broad.mit.edu;ucsc.edu 37 10 16975260 16975260 + Missense_Mutation SNP T A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx CUBN 8029 broad.mit.edu;ucsc.edu 37 10 17151672 17151672 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUBN 8029 hgsc.bcm.edu 37 10 17169882 17169882 + Silent SNP A A G novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID CUBN 8029 hgsc.bcm.edu;ucsc.edu 37 10 16873255 16873255 + Silent SNP G G T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID CUBN 8029 hgsc.bcm.edu;ucsc.edu 37 10 17126413 17126413 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID CUEDC1 404093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 55948719 55948719 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUEDC2 79004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104184284 104184284 + Silent SNP T T A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL1 8454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148454216 148454216 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL1 8454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148485659 148485659 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL1 8454 hgsc.bcm.edu;ucsc.edu 37 7 148486899 148486899 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL2 8453 broad.mit.edu;ucsc.edu 37 10 35299283 35299283 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUL3 8452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225342980 225342980 + Silent SNP T T C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL3 8452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225360600 225360600 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL3 8452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225368421 225368421 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL3 8452 hgsc.bcm.edu 37 2 225422498 225422498 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL3 8452 hgsc.bcm.edu;ucsc.edu 37 2 225370726 225370727 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL3 8452 hgsc.bcm.edu;ucsc.edu 37 2 225379414 225379414 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL4B 8450 broad.mit.edu;ucsc.edu 37 X 119694026 119694026 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUL5 8065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 107974931 107974931 + Silent SNP A A G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL7 9820 broad.mit.edu 37 6 43013037 43013037 + Missense_Mutation SNP T C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUL7 9820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43017376 43017376 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL7 9820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43019452 43019452 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL7 9820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43020004 43020004 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL9 23113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43153719 43153719 + Silent SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL9 23113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43170869 43170869 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL9 23113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43173114 43173114 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL9 23113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43188337 43188337 + Silent SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUL9 23113 hgsc.bcm.edu 37 6 43154085 43154085 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL9 23113 hgsc.bcm.edu 37 6 43174214 43174214 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL9 23113 hgsc.bcm.edu 37 6 43174214 43174214 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL9 23113 hgsc.bcm.edu 37 6 43174215 43174215 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL9 23113 hgsc.bcm.edu 37 6 43174224 43174224 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL9 23113 hgsc.bcm.edu;ucsc.edu 37 6 43166412 43166414 + In_Frame_Del DEL GGG GGG - rs141674093 bycluster;by1000genomes TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 GGG GGG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUL9 23113 hgsc.bcm.edu;ucsc.edu 37 6 43182827 43182827 + Missense_Mutation SNP C C A rs146106470 unknown;alternate_allele TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CUTA 51596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33384503 33384503 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 broad.mit.edu 37 7 101891738 101891738 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUX1 1523 broad.mit.edu;hgsc.bcm.edu 37 7 101813771 101813771 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101747717 101747717 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101923413 101923413 + Splice_Site SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101925178 101925178 + Missense_Mutation SNP T T G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101926034 101926034 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 broad.mit.edu;ucsc.edu 37 7 101460891 101460891 + 5'UTR SNP C G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUX1 1523 hgsc.bcm.edu;ucsc.edu 37 7 101844801 101844802 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUX1 1523 hgsc.bcm.edu;ucsc.edu 37 7 101845357 101845358 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUZD1 50624 broad.mit.edu 37 10 124591749 124591749 + 3'UTR SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CUZD1 50624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124593448 124593448 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CUZD1 50624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124594540 124594540 + Missense_Mutation SNP C C T rs188322992 by1000genomes TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC15 51503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94704596 94704596 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC15 51503 hgsc.bcm.edu 37 11 94699507 94699508 + Frame_Shift_Ins INS - - T rs34805065 bycluster;by1000genomes TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC22 57703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 180818964 180818964 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC22 57703 hgsc.bcm.edu 37 2 180815323 180815323 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWC22 57703 hgsc.bcm.edu 37 2 180851432 180851432 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC22 57703 hgsc.bcm.edu;ucsc.edu 37 2 180819021 180819021 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWC25 54883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36963045 36963045 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC25 54883 hgsc.bcm.edu 37 17 36959026 36959026 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWC25 54883 hgsc.bcm.edu;ucsc.edu 37 17 36959026 36959026 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWC27 10283 hgsc.bcm.edu;ucsc.edu 37 5 64314067 64314067 + Silent SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWC27 10283 broad.mit.edu 37 5 64140985 64140985 + Intron DEL T - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CWC27 10283 broad.mit.edu 37 5 64314204 64314204 + 3'UTR SNP A C C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CWC27 10283 broad.mit.edu 37 5 64314204 64314204 + 3'UTR SNP A C C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CWC27 10283 broad.mit.edu 37 5 64314204 64314204 + 3'UTR SNP A C C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CWC27 10283 broad.mit.edu;ucsc.edu 37 5 64082386 64082386 + Silent SNP G A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CWF19L1 55280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102006678 102006678 + Silent SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWF19L1 55280 hgsc.bcm.edu 37 10 102027320 102027320 + Splice_Region SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWH43 80157 broad.mit.edu;hgsc.bcm.edu 37 4 49019269 49019269 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CWH43 80157 hgsc.bcm.edu;ucsc.edu 37 4 49005767 49005767 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWH43 80157 hgsc.bcm.edu;ucsc.edu 37 4 49005842 49005842 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CWH43 80157 hgsc.bcm.edu;ucsc.edu 37 4 49034691 49034691 + Silent SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXADR 1525 hgsc.bcm.edu;ucsc.edu 37 21 18931362 18931363 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXADRP2 646243 broad.mit.edu 37 15 22016431 22016431 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCL10 3627 broad.mit.edu 37 4 76942991 76942991 + 3'UTR SNP G T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCL10 3627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 76943924 76943924 + Silent SNP A A G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXCL11 6373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 76956490 76956490 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXCL12 6387 broad.mit.edu 37 10 44868551 44868551 + 3'UTR SNP T A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCL14 9547 broad.mit.edu 37 5 134907401 134907401 + 3'UTR SNP A G G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCL14 9547 broad.mit.edu 37 5 134907433 134907433 + 3'UTR SNP T C C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCL14 9547 hgsc.bcm.edu 37 5 134907481 134907481 + 3'UTR SNP G G T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXCL6 6372 broad.mit.edu 37 4 74702427 74702427 + 5'UTR SNP T C C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCR2 3579 broad.mit.edu;ucsc.edu 37 2 218999551 218999551 + Silent SNP C T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCR2P1 3580 broad.mit.edu 37 2 218925340 218925340 + Silent SNP G T T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCR4 7852 broad.mit.edu;ucsc.edu 37 2 136872770 136872770 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXCR6 10663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 45988547 45988547 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXCR6 10663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 45988808 45988808 + Silent SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXCR7 57007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 237489349 237489349 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXCR7 57007 hgsc.bcm.edu 37 2 237489859 237489859 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf21 80231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30578381 30578381 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf22 170063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 35974189 35974189 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf23 256643 hgsc.bcm.edu 37 X 19971168 19971168 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf26 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75397644 75397644 + Silent SNP A A G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf30 645090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 36324941 36324941 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf36 79742 hgsc.bcm.edu;ucsc.edu 37 X 45016973 45016973 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf38 159013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 40506319 40506319 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf40B 541578 hgsc.bcm.edu 37 X 149102006 149102006 + Silent SNP A A G rs626113 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf40B 541578 hgsc.bcm.edu;ucsc.edu 37 X 149100904 149100904 + Missense_Mutation SNP G G A rs151337313 byfrequency TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf41 0 hgsc.bcm.edu;ucsc.edu 37 X 106462183 106462183 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf48 54967 hgsc.bcm.edu 37 X 134292203 134292203 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf51 0 hgsc.bcm.edu 37 X 145896115 145896115 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf51 0 hgsc.bcm.edu 37 X 145896115 145896115 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf51(dist=398773) 0 broad.mit.edu;hgsc.bcm.edu 37 X 146295022 146295022 + IGR SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf59 0 broad.mit.edu 37 X 36163179 36163180 + 3'UTR DEL TA - - rs112151442 unknown;alternate_allele TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CXorf64 100130613 hgsc.bcm.edu 37 X 125955323 125955323 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf65 158830 hgsc.bcm.edu;ucsc.edu 37 X 70326251 70326251 + Silent SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf66 347487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 139040297 139040297 + Silent SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXorf66 347487 hgsc.bcm.edu 37 X 139038424 139038424 + Silent SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXorf66 347487 hgsc.bcm.edu;ucsc.edu 37 X 139038512 139038512 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXXC1 30827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47808972 47808972 + Silent SNP G G A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXXC1 30827 hgsc.bcm.edu 37 18 47810394 47810394 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CXXC1P1(dist=61323) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47657350 47657350 + IGR SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CXXC4 80319 hgsc.bcm.edu;ucsc.edu 37 4 105393489 105393489 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYB5A 1528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 71930704 71930704 + Silent SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5B 80777 broad.mit.edu 37 16 69482267 69482267 + Intron DEL T - - rs5817668 unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYB5B 80777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69481136 69481136 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5B 80777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69481137 69481137 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5B 80777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69481138 69481138 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5D2 124936 broad.mit.edu 37 17 4046946 4046946 + 5'UTR SNP A C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYB5R1 51706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202932260 202932260 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5R1 51706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202932810 202932810 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5R2 51700 hgsc.bcm.edu;ucsc.edu 37 11 7686754 7686754 + Missense_Mutation SNP C C T rs112522871 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYB5R3 1727 broad.mit.edu;hgsc.bcm.edu 37 22 43024289 43024289 + Splice_Site SNP T T A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5R3 1727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 43024287 43024287 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYB5RL 606495 broad.mit.edu 37 1 54661136 54661136 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYB5RL 606495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54644949 54644949 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYBASC3 220002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61120499 61120499 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYBRD1 79901 broad.mit.edu;hgsc.bcm.edu 37 2 172411334 172411334 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYBRD1 79901 hgsc.bcm.edu 37 2 172409900 172409900 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYC1 1537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145151520 145151520 + Silent SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYFIP1 23191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 22928512 22928512 + Splice_Site SNP T T C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYFIP1 23191 hgsc.bcm.edu 37 15 22926030 22926030 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYFIP1 23191 hgsc.bcm.edu;ucsc.edu 37 15 22928433 22928434 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYFIP1 23191 hgsc.bcm.edu;ucsc.edu 37 15 22956552 22956552 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYFIP2 26999 broad.mit.edu 37 5 156820108 156820108 + 3'UTR SNP A G G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYFIP2 26999 broad.mit.edu 37 5 156820216 156820216 + 3'UTR DEL A - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYFIP2 26999 broad.mit.edu;hgsc.bcm.edu 37 5 156746796 156746796 + Silent SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYFIP2 26999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156753229 156753229 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYFIP2 26999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156810297 156810297 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYFIP2 26999 hgsc.bcm.edu 37 5 156738710 156738710 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYFIP2 26999 hgsc.bcm.edu;ucsc.edu 37 5 156742017 156742017 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYFIP2 26999 hgsc.bcm.edu;ucsc.edu 37 5 156750963 156750963 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYGB 114757 broad.mit.edu 37 17 74533652 74533652 + 5'UTR SNP G T T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYGB 114757 hgsc.bcm.edu 37 17 74527607 74527607 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYHR1 50626 broad.mit.edu 37 8 145689287 145689287 + Intron DEL C - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYHR1 50626 broad.mit.edu 37 8 145689375 145689375 + Intron SNP C A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYLC1 1538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 83128044 83128044 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYLC1 1538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 83128364 83128364 + Silent SNP A A G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYLC1 1538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 83128529 83128529 + Silent SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYLC1 1538 hgsc.bcm.edu 37 X 83128982 83128982 + Silent SNP A A G novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYLC1 1538 hgsc.bcm.edu;ucsc.edu 37 X 83128851 83128851 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYLC2 1539 hgsc.bcm.edu 37 9 105763848 105763848 + Intron SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYLC2 1539 hgsc.bcm.edu 37 9 105763848 105763848 + Intron SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYLD 1540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50783997 50783997 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq CYP11A1 1583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 74636237 74636237 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP11B1 1584 hgsc.bcm.edu 37 8 143959174 143959174 + Intron SNP T T C rs75717953 byfrequency TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP11B2 1585 broad.mit.edu 37 8 143993101 143993102 + 3'UTR INS - GGA GGA novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP11B2 1585 broad.mit.edu 37 8 143994277 143994277 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP11B2 1585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143994011 143994011 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP17A1 1586 broad.mit.edu 37 10 104590294 104590294 + 3'UTR DEL A - - rs45455494 byfrequency TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP17A1 1586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104596868 104596868 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP19A1 1588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51514629 51514629 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP19A1 1588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51520122 51520122 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP1A1 1543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75013623 75013623 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP1A2 1544 broad.mit.edu 37 15 75047169 75047169 + Missense_Mutation SNP C T T rs28399424 bycluster;byfrequency TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP1A2 1544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75042328 75042328 + Silent SNP G G A rs17861153 bycluster;byfrequency TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP1A2 1544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75042368 75042368 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP1A2 1544 hgsc.bcm.edu 37 15 75044488 75044489 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP20A1 57404 broad.mit.edu 37 2 204161707 204161707 + 3'UTR SNP T C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP20A1 57404 broad.mit.edu 37 2 204161733 204161733 + 3'UTR SNP A G G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP21A2 1589 broad.mit.edu 37 6 32006526 32006526 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP21A2 1589 hgsc.bcm.edu 37 6 31974850 31974852 + In_Frame_Del DEL GAG GAG - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP26B1 56603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72359545 72359545 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP26B1 56603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72362015 72362015 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP26B1 56603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72371136 72371136 + Silent SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP27A1 1593 hgsc.bcm.edu 37 2 219676942 219676942 + Intron SNP C C A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP27B1 1594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58158259 58158259 + Silent SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP27C1 339761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 127961091 127961091 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2A13 1553 broad.mit.edu;hgsc.bcm.edu 37 19 41594486 41594486 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2A13 1553 broad.mit.edu;hgsc.bcm.edu 37 19 41601828 41601828 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2A13 1553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41594410 41594410 + Silent SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2A7 1549 broad.mit.edu 37 19 41448080 41448080 + Intron SNP C T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2A7 1549 broad.mit.edu 37 19 41533022 41533022 + Intron SNP G C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2A7 1549 broad.mit.edu 37 19 41533038 41533038 + Intron SNP C T T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2A7 1549 broad.mit.edu 37 19 41533038 41533038 + Intron SNP C T T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2A7 1549 broad.mit.edu 37 19 41533104 41533104 + Intron SNP G A A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2A7 1549 broad.mit.edu 37 19 41533104 41533104 + Intron SNP G A A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2B6 1555 broad.mit.edu;hgsc.bcm.edu 37 19 41515984 41515984 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2C19 1557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96534859 96534859 + Silent SNP G G A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2C19 1557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96580386 96580386 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2C8 1558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96805619 96805619 + Silent SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2C9 1559 broad.mit.edu 37 10 96702177 96702177 + Intron SNP G T T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2D6 1565 broad.mit.edu 37 22 42522550 42522550 + 3'UTR SNP G A A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2D6 1565 hgsc.bcm.edu 37 22 42524795 42524795 + Silent SNP A A G rs28371713 bycluster;byfrequency TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2D6 1565 hgsc.bcm.edu 37 22 42524814 42524814 + Missense_Mutation SNP A A G rs5758599 unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2D6 1565 hgsc.bcm.edu 37 22 42524924 42524924 + Silent SNP A A G rs111606937 unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2D7P1 1564 broad.mit.edu 37 22 42538870 42538870 + Missense_Mutation SNP A C C rs2982057 by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2D7P1 1564 broad.mit.edu 37 22 42538870 42538870 + Missense_Mutation SNP A C C rs2982057 by1000genomes TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2D7P1 1564 broad.mit.edu 37 22 42540454 42540454 + 5'UTR SNP T C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2E1 1571 broad.mit.edu 37 10 135369641 135369641 + 3'UTR SNP A G G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2E1 1571 broad.mit.edu;hgsc.bcm.edu 37 10 135345243 135345243 + Intron SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2E1 1571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 135347393 135347393 + Missense_Mutation SNP A A C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2F1 1572 broad.mit.edu 37 19 41627951 41627951 + Silent SNP C T T rs139489388 unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2F1 1572 broad.mit.edu 37 19 41631142 41631142 + Intron SNP A G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2F1 1572 broad.mit.edu 37 19 41631168 41631168 + Intron SNP T G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP2J2 1573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 60359336 60359336 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2J2 1573 hgsc.bcm.edu 37 1 60392210 60392210 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP2R1 120227 hgsc.bcm.edu 37 11 14913615 14913616 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP2U1 113612 hgsc.bcm.edu 37 4 108868571 108868571 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP39A1 51302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46563727 46563727 + Silent SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP3A5 1577 hgsc.bcm.edu;ucsc.edu 37 7 99277434 99277434 + Intron SNP T T A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP3A7 1551 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99313483 99313483 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP46A1 10858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100166423 100166423 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP46A1 10858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100191787 100191787 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4A11 1579 broad.mit.edu 37 1 47401310 47401310 + Missense_Mutation SNP C T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP4A11 1579 broad.mit.edu;hgsc.bcm.edu 37 1 47399695 47399695 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4A11 1579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47401233 47401233 + Silent SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4A11 1579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47402390 47402390 + Nonsense_Mutation SNP A A C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4A11 1579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47403749 47403749 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4A22 284541 broad.mit.edu 37 1 47612030 47612030 + Intron SNP C T T rs1078311 bycluster;byfrequency TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP4A22 284541 hgsc.bcm.edu 37 1 47610117 47610117 + Silent SNP C C T rs12754799 unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4A22 284541 hgsc.bcm.edu 37 1 47610310 47610310 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4A22 284541 hgsc.bcm.edu;ucsc.edu 37 1 47610117 47610117 + Silent SNP C C T rs12754799 unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4B1 1580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47279221 47279221 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4B1 1580 hgsc.bcm.edu;ucsc.edu 37 1 47282767 47282767 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4B1 1580 hgsc.bcm.edu;ucsc.edu 37 1 47284326 47284326 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4F11 57834 hgsc.bcm.edu 37 19 16024651 16024651 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4F11 57834 hgsc.bcm.edu 37 19 16035643 16035643 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4F11 57834 hgsc.bcm.edu;ucsc.edu 37 19 16038275 16038275 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4F12 66002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15784434 15784434 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4F12 66002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15794430 15794430 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4F12 66002 hgsc.bcm.edu;ucsc.edu 37 19 15794425 15794425 + Missense_Mutation SNP A A G rs116788636 byfrequency;by1000genomes TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4F2 8529 broad.mit.edu;hgsc.bcm.edu 37 19 15989682 15989682 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4F8 11283 broad.mit.edu 37 19 15729400 15729400 + Intron DEL T - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP4F8 11283 hgsc.bcm.edu 37 19 15734506 15734506 + Intron SNP C C A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP4V2 285440 broad.mit.edu 37 4 187131994 187131994 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP4X1 260293 broad.mit.edu;ucsc.edu 37 1 47498916 47498916 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP4X1 260293 hgsc.bcm.edu 37 1 47497176 47497176 + Intron SNP A A T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP4Z2P 163720 broad.mit.edu 37 1 47325354 47325354 + RNA SNP G A A rs4660360 bycluster;byhapmap;by1000genomes TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP4Z2P 163720 broad.mit.edu 37 1 47333687 47333687 + RNA SNP G T T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYP7A1 1581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 59404310 59404310 + Silent SNP A A C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP7B1 9420 hgsc.bcm.edu;ucsc.edu 37 8 65517238 65517238 + Splice_Site SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYP8B1 1582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42915969 42915969 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP8B1 1582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42916230 42916230 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYP8B1 1582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42917124 42917124 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYSLTR1 10800 broad.mit.edu;hgsc.bcm.edu 37 X 77529262 77529262 + 5'UTR SNP G G C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYSLTR1 10800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 77528390 77528390 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYTH1 9267 broad.mit.edu;ucsc.edu 37 17 76677108 76677108 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTH1 9267 broad.mit.edu;ucsc.edu 37 17 76692093 76692093 + Intron SNP T A A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTH2 9266 broad.mit.edu 37 19 48975743 48975743 + Intron SNP C A A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTH2 9266 broad.mit.edu 37 19 48977567 48977567 + Silent SNP C T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTH2 9266 broad.mit.edu 37 19 48984369 48984369 + 3'UTR SNP A G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTH2 9266 broad.mit.edu;hgsc.bcm.edu 37 19 48975728 48975728 + Intron SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYTH2 9266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48977501 48977501 + Missense_Mutation SNP G G A rs1804728 unknown;alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYTH3 9265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6226736 6226736 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq CYTH4 27128 broad.mit.edu 37 22 37705485 37705485 + Intron SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTH4 27128 hgsc.bcm.edu 37 22 37708130 37708130 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID CYTSB 0 broad.mit.edu;ucsc.edu 37 17 20108270 20108270 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx CYTSB 0 hgsc.bcm.edu;ucsc.edu 37 17 20108593 20108593 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID D2HGDH 728294 hgsc.bcm.edu 37 2 242680459 242680459 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID D2HGDH 728294 hgsc.bcm.edu 37 2 242684222 242684222 + Silent SNP T T A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID D4S234E 0 broad.mit.edu;hgsc.bcm.edu 37 4 4411393 4411393 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq D4S234E 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 4389419 4389419 + Silent SNP C C G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq D4S234E 0 hgsc.bcm.edu 37 4 4389386 4389386 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAAM1 23002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59834206 59834206 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAAM1 23002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59834241 59834241 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAAM1 23002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59835514 59835514 + Silent SNP A A G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAB1 1600 broad.mit.edu 37 1 57481090 57481090 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAB1 1600 hgsc.bcm.edu 37 1 57491680 57491680 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAB1 1600 hgsc.bcm.edu;ucsc.edu 37 1 57476856 57476856 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAB2 1601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39376876 39376876 + Silent SNP T T A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAB2 1601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39383077 39383077 + Silent SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAB2 1601 hgsc.bcm.edu 37 5 39382723 39382723 + Silent SNP A A C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAB2 1601 hgsc.bcm.edu;ucsc.edu 37 5 39381655 39381655 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DACH1 1602 broad.mit.edu 37 13 72204836 72204836 + Silent SNP G A A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DACH1 1602 hgsc.bcm.edu;ucsc.edu 37 13 72049972 72049972 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DACH2 117154 broad.mit.edu 37 X 86069820 86069820 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DACH2 117154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 85906058 85906058 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DACT1 51339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59112841 59112841 + Silent SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DACT1 51339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59113096 59113096 + Silent SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DACT1 51339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59113389 59113389 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DACT1 51339 hgsc.bcm.edu 37 14 59113726 59113726 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID DACT1(dist=425055) 0 hgsc.bcm.edu;ucsc.edu 37 14 59540093 59540093 + IGR SNP A A G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAD1 1603 broad.mit.edu 37 14 23058134 23058134 + 5'UTR SNP G A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAGLA 747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61495757 61495757 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAGLA 747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61504731 61504731 + Silent SNP C C T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAGLA 747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61511889 61511889 + Silent SNP C C T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAGLA 747 hgsc.bcm.edu 37 11 61505673 61505673 + Silent SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAGLB 221955 broad.mit.edu 37 7 6461459 6461459 + Intron SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAGLB 221955 hgsc.bcm.edu;ucsc.edu 37 7 6474529 6474529 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAK 26007 broad.mit.edu 37 11 61114010 61114028 + 3'UTR DEL TCACTGCTGTGCTGAGGTG - - rs139930374 by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 TCACTGCTGTGCTGAGGTG TCACTGCTGTGCTGAGGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAK 26007 hgsc.bcm.edu;ucsc.edu 37 11 61105442 61105442 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAK 26007 hgsc.bcm.edu;ucsc.edu 37 11 61113379 61113379 + Silent SNP A A G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAND5 199699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 13080675 13080675 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAND5 199699 broad.mit.edu;ucsc.edu 37 19 13084386 13084386 + Missense_Mutation SNP C G G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAND5 199699 hgsc.bcm.edu 37 19 13080510 13080510 + Silent SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAO 1610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109290797 109290797 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAO 1610 hgsc.bcm.edu 37 12 109286733 109286733 + Intron SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAO 1610 hgsc.bcm.edu 37 12 109286837 109286837 + Intron SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAPK1 1612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 90255297 90255297 + Silent SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK1 1612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 90258354 90258354 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK1 1612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 90311963 90311963 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK1 1612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 90321652 90321652 + Silent SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK2 23604 broad.mit.edu 37 15 64201250 64201251 + Intron DEL CA - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAPK2 23604 broad.mit.edu;hgsc.bcm.edu 37 15 64200798 64200798 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK2 23604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 64218210 64218210 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK3 1613 hgsc.bcm.edu 37 19 3964716 3964716 + Silent SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAPK3 1613 hgsc.bcm.edu 37 19 3964978 3964984 + Frame_Shift_Del DEL GCAAACT GCAAACT - novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 GCAAACT GCAAACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAPK3 1613 hgsc.bcm.edu;ucsc.edu 37 19 3964350 3964350 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DAPP1 27071 hgsc.bcm.edu 37 4 100738085 100738085 + Silent SNP A A G novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DAPP1 27071 hgsc.bcm.edu;ucsc.edu 37 4 100756843 100756843 + Silent SNP C C T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DARC 2532 hgsc.bcm.edu 37 1 159174793 159174793 + Intron SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DARS 1615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 136678172 136678172 + Splice_Site SNP T T C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAXX 1616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33286892 33286892 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAXX 1616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33287883 33287883 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAXX 1616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33288852 33288852 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAXX 1616 broad.mit.edu;ucsc.edu 37 6 33289504 33289504 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DAZAP1 26528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1433802 1433802 + Silent SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAZAP1 26528 hgsc.bcm.edu 37 19 1432568 1432569 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DAZL 1618 broad.mit.edu 37 3 16630109 16630109 + 3'UTR SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DBC1 1620 broad.mit.edu;hgsc.bcm.edu 37 9 121929960 121929960 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBF4B 80174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42828502 42828502 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBH 1621 broad.mit.edu 37 9 136523584 136523584 + 3'UTR SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DBH 1621 broad.mit.edu;hgsc.bcm.edu 37 9 136521598 136521598 + Intron SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBH 1621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136505100 136505100 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBH 1621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136522203 136522203 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBI 1622 broad.mit.edu 37 2 120129921 120129921 + 3'UTR SNP G T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DBI 1622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120129819 120129819 + Splice_Site SNP A A T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBI 1622 hgsc.bcm.edu 37 2 120128350 120128350 + Silent SNP C C A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBI 1622 hgsc.bcm.edu;ucsc.edu 37 2 120128385 120128385 + Splice_Region SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBN1 1627 broad.mit.edu;hgsc.bcm.edu 37 5 176894482 176894482 + Silent SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBN1 1627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176893974 176893974 + Silent SNP C C A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBN1 1627 broad.mit.edu;ucsc.edu 37 5 176894265 176894265 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DBNDD1 79007 broad.mit.edu;hgsc.bcm.edu 37 16 90076458 90076458 + 5'UTR SNP T T C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBNDD1 79007 hgsc.bcm.edu 37 16 90075259 90075259 + Silent SNP C C T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBNL 28988 hgsc.bcm.edu 37 7 44098492 44098493 + Frame_Shift_Ins INS - - CC novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBNL 28988 hgsc.bcm.edu 37 7 44099692 44099692 + Missense_Mutation SNP C C A rs151003280 unknown;alternate_allele TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBP 1628 broad.mit.edu 37 19 49134131 49134131 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DBR1 51163 hgsc.bcm.edu 37 3 137893493 137893493 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBT 1629 broad.mit.edu 37 1 100657114 100657114 + 3'UTR DEL A - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DBT 1629 hgsc.bcm.edu 37 1 100671866 100671866 + Splice_Region SNP T T A rs34229137 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBT 1629 hgsc.bcm.edu 37 1 100671866 100671866 + Splice_Region SNP T T A rs34229137 bycluster;byfrequency;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBT 1629 hgsc.bcm.edu;ucsc.edu 37 1 100671773 100671773 + Intron SNP C C G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DBX1 120237 hgsc.bcm.edu 37 11 20177783 20177783 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DBX2 440097 hgsc.bcm.edu;ucsc.edu 37 12 45429899 45429899 + Splice_Site SNP T T G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCAF11 80344 broad.mit.edu;hgsc.bcm.edu 37 14 24590705 24590705 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF11 80344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24587733 24587733 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF11 80344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24588354 24588354 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF11 80344 hgsc.bcm.edu;ucsc.edu 37 14 24590696 24590697 + Frame_Shift_Ins INS - - AC novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF12L1 139170 broad.mit.edu;hgsc.bcm.edu 37 X 125685459 125685459 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF12L1 139170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 125686496 125686496 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF13 25879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104427735 104427735 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF13 25879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104438314 104438314 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF13 25879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104444966 104444966 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF13 25879 hgsc.bcm.edu 37 8 104444937 104444937 + Silent SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCAF16 54876 broad.mit.edu;hgsc.bcm.edu 37 4 17805767 17805767 + 5'UTR SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF17 80067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 172291646 172291646 + Silent SNP C C G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF4L1 285429 broad.mit.edu;ucsc.edu 37 4 41983927 41983927 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAF4L2 138009 broad.mit.edu;ucsc.edu 37 8 88885732 88885732 + Silent SNP G A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAF5 8816 broad.mit.edu;hgsc.bcm.edu 37 14 69589045 69589045 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF5 8816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 69520975 69520975 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF5 8816 broad.mit.edu 37 14 69585167 69585167 + Intron DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAF6 55827 broad.mit.edu;hgsc.bcm.edu 37 1 167974003 167974003 + Silent SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF6 55827 broad.mit.edu;ucsc.edu 37 1 168034953 168034953 + Silent SNP A T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAF7 10238 broad.mit.edu 37 17 61628100 61628100 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAF8 50717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160209814 160209814 + Silent SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF8L1 139425 broad.mit.edu;hgsc.bcm.edu 37 X 27998267 27998267 + Silent SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF8L1 139425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27997690 27997690 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF8L2 347442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27766775 27766775 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCAF8L2 347442 broad.mit.edu 37 X 27765420 27765421 + In_Frame_Ins INS - ATACAA ATACAA rs34350719 unknown;alternate_allele TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAF8L2 347442 broad.mit.edu;ucsc.edu 37 X 27766433 27766433 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAKD 79877 broad.mit.edu 37 17 43101655 43101664 + 3'UTR DEL GTGTGTGTGT - - rs10578787 unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 GTGTGTGTGT GTGTGTGTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCAKD 79877 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43112204 43112204 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCBLD1 285761 hgsc.bcm.edu;ucsc.edu 37 6 117865746 117865746 + Splice_Region SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCC 1630 broad.mit.edu 37 18 49867049 49867049 + 5'UTR SNP C A A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCC 1630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 50683750 50683750 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCC 1630 broad.mit.edu;ucsc.edu 37 18 50994332 50994332 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCC 1630 hgsc.bcm.edu;ucsc.edu 37 18 50918089 50918089 + Silent SNP C C G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCC 1630 hgsc.bcm.edu;ucsc.edu 37 18 50923805 50923805 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCDC1 341019 broad.mit.edu 37 11 31284477 31284477 + 3'UTR SNP A C C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCDC1 341019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 31327871 31327871 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC1 341019 hgsc.bcm.edu;ucsc.edu 37 11 31327796 31327796 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCDC2 51473 hgsc.bcm.edu 37 6 24289142 24289142 + Splice_Region SNP A A C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCDC2 51473 hgsc.bcm.edu;ucsc.edu 37 6 24205282 24205283 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC2B 149069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32678141 32678141 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC5 100506627 broad.mit.edu;hgsc.bcm.edu 37 11 30921891 30921891 + Splice_Site SNP A A G novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC5 100506627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30926700 30926700 + Intron SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC5 100506627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30930565 30930565 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC5 100506627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30953424 30953424 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCDC5 100506627 hgsc.bcm.edu;ucsc.edu 37 11 30928192 30928192 + Silent SNP T T C novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCHS1 8642 broad.mit.edu 37 11 6643734 6643734 + Missense_Mutation SNP G A A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCHS1 8642 broad.mit.edu 37 11 6662745 6662746 + In_Frame_Ins INS - CAG CAG rs56194704 unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCHS1 8642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6652328 6652328 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS1 8642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6661620 6661620 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS1 8642 hgsc.bcm.edu 37 11 6646503 6646503 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCHS2 54798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155155839 155155839 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS2 54798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155156296 155156296 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS2 54798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155219151 155219151 + Silent SNP A A T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS2 54798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155253991 155253991 + Silent SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS2 54798 hgsc.bcm.edu 37 4 155156936 155156936 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCHS2 54798 hgsc.bcm.edu 37 4 155312411 155312411 + Silent SNP G G A rs62331900 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCHS2 54798 hgsc.bcm.edu 37 4 155410650 155410650 + Missense_Mutation SNP T T C rs72731014 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCHS2 54798 hgsc.bcm.edu;ucsc.edu 37 4 155157548 155157548 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCI 0 hgsc.bcm.edu 37 16 2293316 2293316 + Intron SNP T T G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCK 1633 broad.mit.edu 37 4 71895356 71895357 + 3'UTR INS - CT CT novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCK 1633 broad.mit.edu 37 4 71895356 71895357 + 3'UTR INS - CT CT novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCK 1633 broad.mit.edu 37 4 71895356 71895357 + 3'UTR INS - CT CT novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCK 1633 broad.mit.edu 37 4 71895356 71895357 + 3'UTR INS - CT CT novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCK 1633 broad.mit.edu 37 4 71895356 71895357 + 3'UTR INS - CT CT novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCLK1 9201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 36521538 36521538 + Silent SNP C C T rs146364649 bycluster;by1000genomes TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DCLK2 166614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 151169528 151169528 + Silent SNP C C A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCLK2 166614 hgsc.bcm.edu 37 4 151000431 151000431 + Silent SNP C C T rs56388384 bycluster;byfrequency;by1000genomes TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCLK2 166614 hgsc.bcm.edu;ucsc.edu 37 4 151145731 151145731 + Intron SNP A A G rs111407757 unknown;alternate_allele TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCLRE1A 9937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115609321 115609321 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCLRE1A 9937 hgsc.bcm.edu;ucsc.edu 37 10 115609997 115609997 + Silent SNP T T A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCLRE1B 64858 broad.mit.edu;hgsc.bcm.edu 37 1 114454408 114454408 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCN 1634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 91545456 91545456 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCN 1634 hgsc.bcm.edu;ucsc.edu 37 12 91550907 91550907 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCN 1634 hgsc.bcm.edu;ucsc.edu 37 12 91572254 91572254 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCP1A 55802 hgsc.bcm.edu 37 3 53378984 53378984 + Intron SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCP1A 55802 hgsc.bcm.edu;ucsc.edu 37 3 53326738 53326738 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCP2 167227 broad.mit.edu 37 5 112349325 112349325 + 3'UTR SNP G T T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCST1 149095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155006934 155006934 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCST1 149095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155014062 155014062 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCST1 149095 hgsc.bcm.edu 37 1 155023256 155023256 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCST2 127579 broad.mit.edu 37 1 155006218 155006218 + 5'UTR SNP C A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCST2 127579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154995893 154995893 + Silent SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCST2 127579 broad.mit.edu;ucsc.edu 37 1 155002622 155002622 + Missense_Mutation SNP G A A rs138904334 unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCT 1638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95092274 95092274 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCT 1638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95114377 95114377 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCT 1638 hgsc.bcm.edu 37 13 95121259 95121259 + Silent SNP G G A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCT 1638 hgsc.bcm.edu;ucsc.edu 37 13 95092164 95092165 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCT 1638 hgsc.bcm.edu;ucsc.edu 37 13 95117927 95117927 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCTD 1635 broad.mit.edu 37 4 183812459 183812459 + 3'UTR SNP G A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCTD 1635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 183836682 183836682 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCTN1 1639 broad.mit.edu;hgsc.bcm.edu 37 2 74598753 74598753 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCTN1 1639 broad.mit.edu;ucsc.edu 37 2 74607187 74607187 + 5'UTR SNP C A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCTN1 1639 hgsc.bcm.edu 37 2 74605251 74605251 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCTN2 10540 hgsc.bcm.edu;ucsc.edu 37 12 57926027 57926027 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCTN4 51164 broad.mit.edu 37 5 150090663 150090663 + 3'UTR SNP G A A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCTN4 51164 hgsc.bcm.edu;ucsc.edu 37 5 150138487 150138487 + Silent SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DCTPP1 79077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30435760 30435760 + Silent SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCUN1D1 54165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182662880 182662880 + 3'UTR SNP T T G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCUN1D1 54165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182683307 182683336 + Frame_Shift_Del DEL TCACAAGCAAGCACTCACCTTTGTATCTAT TCACAAGCAAGCACTCACCTTTGTATCTAT - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 TCACAAGCAAGCACTCACCTTTGTATCTAT TCACAAGCAAGCACTCACCTTTGTATCTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DCUN1D2 55208 broad.mit.edu 37 13 114112239 114112239 + 3'UTR SNP T G G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCUN1D3 123879 broad.mit.edu 37 16 20870873 20870874 + 3'UTR INS - C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DCUN1D3 123879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20871576 20871576 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDA1 79016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17425185 17425185 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDAH1 23576 broad.mit.edu 37 1 85784769 85784770 + 3'UTR DEL TG - - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDAH1 23576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85817252 85817252 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDAH2 23564 broad.mit.edu 37 6 31697051 31697051 + 5'UTR SNP C A A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDAH2 23564 broad.mit.edu 37 6 31697052 31697052 + 5'UTR SNP A T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDB1 1642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61070127 61070127 + Silent SNP T T C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDB1 1642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61081631 61081631 + Silent SNP T T A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDB1 1642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61081632 61081632 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDB1 1642 hgsc.bcm.edu 37 11 61081149 61081149 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDB1 1642 hgsc.bcm.edu;ucsc.edu 37 11 61097462 61097462 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDC 1644 broad.mit.edu 37 7 50607651 50607651 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDC 1644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50611748 50611748 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDHD1 80821 broad.mit.edu 37 14 53619480 53619481 + In_Frame_Ins INS - GCCGCC GCCGCC novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDHD1 80821 hgsc.bcm.edu 37 14 53558606 53558608 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDI1 414301 broad.mit.edu;hgsc.bcm.edu 37 11 103907540 103907540 + 5'UTR SNP G G A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDI1 414301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103908554 103908554 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDI1 414301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103908556 103908556 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDIT3 1649 hgsc.bcm.edu 37 12 57910757 57910757 + Silent SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDIT4L 115265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 101108875 101108875 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDIT4L 115265 hgsc.bcm.edu 37 4 101109221 101109221 + Silent SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDN 23109 broad.mit.edu 37 12 49390707 49390707 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDO 8528 broad.mit.edu;hgsc.bcm.edu 37 6 110714419 110714419 + Silent SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDR1 780 broad.mit.edu;hgsc.bcm.edu 37 6 30866860 30866860 + Intron SNP A A T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDR1 780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30866812 30866812 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DDR2 4921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 162749936 162749936 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDTL 100037417 broad.mit.edu 37 22 24313673 24313673 + 3'UTR SNP C T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDTL 100037417 broad.mit.edu 37 22 24313682 24313682 + 3'UTR SNP G C C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDTL 100037417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24313566 24313566 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX10 1662 broad.mit.edu;hgsc.bcm.edu 37 11 108810996 108810996 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX11 1663 broad.mit.edu 37 12 31237922 31237922 + Missense_Mutation SNP G C C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX11 1663 broad.mit.edu 37 12 31242218 31242218 + Intron SNP A G G rs4081648 unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX11 1663 broad.mit.edu 37 12 31242307 31242307 + Intron SNP T C C rs4031315 unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX11 1663 broad.mit.edu 37 12 31242861 31242861 + Silent SNP A C C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX11 1663 broad.mit.edu 37 12 31256928 31256928 + Silent SNP C G G rs4275703 unknown;alternate_allele TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX11 1663 hgsc.bcm.edu 37 12 31242358 31242358 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX11 1663 hgsc.bcm.edu 37 12 31253615 31253616 + Frame_Shift_Ins INS - - TG novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX1 1653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 15758358 15758358 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX1 1653 hgsc.bcm.edu 37 2 15746321 15746321 + Silent SNP A A C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX11L2 84771 broad.mit.edu 37 2 114357557 114357557 + Nonstop_Mutation SNP A G G rs2747970 bycluster TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX12 0 broad.mit.edu 37 12 9571406 9571406 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX12 0 broad.mit.edu 37 12 9571764 9571764 + Missense_Mutation SNP T G G rs71441736 bycluster TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX12 0 broad.mit.edu 37 12 9573258 9573258 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX12 0 broad.mit.edu 37 12 9578354 9578354 + Missense_Mutation SNP A C C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX12 0 broad.mit.edu;ucsc.edu 37 12 9574042 9574042 + Missense_Mutation SNP C A A rs7298124 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX17 10521 broad.mit.edu 37 22 38881836 38881836 + 3'UTR SNP G A A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX17 10521 broad.mit.edu 37 22 38884154 38884154 + Intron SNP G A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX17 10521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38889717 38889717 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX18 8886 broad.mit.edu;hgsc.bcm.edu 37 2 118578782 118578782 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX18 8886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 118577223 118577223 + Splice_Site SNP A A G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX18 8886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 118583851 118583851 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX18 8886 hgsc.bcm.edu;ucsc.edu 37 2 118578857 118578857 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX20 11218 broad.mit.edu 37 1 112304651 112304651 + Intron SNP C T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX20 11218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112308358 112308358 + Splice_Site SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX20 11218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112309100 112309100 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX20 11218 broad.mit.edu;ucsc.edu 37 1 112302139 112302139 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX20 11218 hgsc.bcm.edu 37 1 112305403 112305403 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX23 9416 hgsc.bcm.edu 37 12 49233688 49233689 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX23 9416 hgsc.bcm.edu;ucsc.edu 37 12 49224320 49224320 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID DDX23 9416 hgsc.bcm.edu;ucsc.edu 37 12 49233687 49233687 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID DDX24 57062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94517732 94517732 + Silent SNP C C A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX24 57062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94519372 94519372 + Silent SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX24 57062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94528593 94528593 + Nonsense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX25 29118 broad.mit.edu 37 11 125786947 125786947 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX25 29118 hgsc.bcm.edu;ucsc.edu 37 11 125791252 125791252 + Silent SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX26B 203522 hgsc.bcm.edu 37 X 134715017 134715017 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX27 55661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47838004 47838004 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX27 55661 hgsc.bcm.edu 37 20 47835898 47835898 + Silent SNP A A G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX27 55661 hgsc.bcm.edu;ucsc.edu 37 20 47835943 47835943 + Silent SNP A A G rs139847823 unknown;alternate_allele TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX28 55794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68055772 68055772 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX31 64794 broad.mit.edu 37 9 135513406 135513406 + Intron DEL A - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX31 64794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135470291 135470291 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX31 64794 hgsc.bcm.edu 37 9 135545604 135545607 + Frame_Shift_Del DEL TGAA TGAA - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 TGAA TGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX31 64794 hgsc.bcm.edu;ucsc.edu 37 9 135538026 135538026 + Silent SNP T T C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX3X 1654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41202084 41202084 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX3X 1654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41203496 41203496 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX3X 1654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41203543 41203544 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX3Y 8653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 15024911 15024911 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX41 51428 broad.mit.edu 37 5 176942286 176942286 + Intron SNP C A A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX41 51428 hgsc.bcm.edu;ucsc.edu 37 5 176942816 176942816 + Silent SNP A A G novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX42 11325 broad.mit.edu 37 17 61886961 61886961 + Silent SNP T C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX42 11325 broad.mit.edu 37 17 61888766 61888766 + Intron DEL T - - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX42 11325 broad.mit.edu 37 17 61888766 61888766 + Intron DEL T - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX42 11325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61890626 61890626 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX43 55510 broad.mit.edu 37 6 74104495 74104496 + 5'UTR INS - G G rs111353107 bycluster;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX4 54514 broad.mit.edu 37 5 55112499 55112499 + 3'UTR DEL A - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX4 54514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55056036 55056036 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX4 54514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55086409 55086409 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX4 54514 hgsc.bcm.edu;ucsc.edu 37 5 55109576 55109576 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX46 9879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134126242 134126242 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX46 9879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134131704 134131704 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX46 9879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134153324 134153324 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX47 51202 hgsc.bcm.edu 37 12 12974842 12974842 + Intron SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX47 51202 hgsc.bcm.edu 37 12 12974949 12974949 + Silent SNP T T C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX47 51202 hgsc.bcm.edu 37 12 12974952 12974952 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX50 79009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70670871 70670871 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DDX50 79009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70695795 70695795 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DDX50 79009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70706192 70706192 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DDX50 79009 hgsc.bcm.edu;ucsc.edu 37 10 70673216 70673216 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM SOLID DDX50 79009 hgsc.bcm.edu;ucsc.edu 37 10 70706119 70706128 + Frame_Shift_Del DEL TGATTCCGAC TGATTCCGAC - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 TGATTCCGAC TGATTCCGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX5 1655 broad.mit.edu 37 17 62495653 62495653 + 3'UTR DEL C - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX5 1655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62496043 62496043 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX5 1655 hgsc.bcm.edu 37 17 62500099 62500102 + Frame_Shift_Del DEL ACAG ACAG - novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 ACAG ACAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX53 168400 broad.mit.edu;hgsc.bcm.edu 37 X 23018221 23018221 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX53 168400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23019821 23019821 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX54 79039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113618759 113618759 + Silent SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX54 79039 hgsc.bcm.edu 37 12 113603616 113603616 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DDX55 57696 broad.mit.edu 37 12 124104803 124104803 + 3'UTR SNP C A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX55 57696 hgsc.bcm.edu;ucsc.edu 37 12 124104644 124104645 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX58 23586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32480246 32480246 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX58 23586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32488009 32488009 + Silent SNP C C T rs151092988 unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX59 83479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200617572 200617572 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX60 55601 broad.mit.edu 37 4 169137918 169137918 + 3'UTR SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DDX6 1656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118635936 118635937 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX6 1656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118656898 118656898 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DDX6 1656 hgsc.bcm.edu;ucsc.edu 37 11 118638975 118638975 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEAF1 10522 broad.mit.edu;hgsc.bcm.edu 37 11 687971 687971 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEC1 50514 broad.mit.edu;hgsc.bcm.edu 37 9 118163493 118163493 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEC1 50514 hgsc.bcm.edu 37 9 118164407 118164407 + 3'UTR SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DECR1 1666 broad.mit.edu;hgsc.bcm.edu 37 8 91013753 91013753 + Silent SNP G G A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DECR2 26063 hgsc.bcm.edu 37 16 460352 460352 + Nonsense_Mutation SNP T T G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEDD 9191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161093708 161093708 + Silent SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEDD 9191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161093979 161093979 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEDD 9191 hgsc.bcm.edu;ucsc.edu 37 1 161094111 161094111 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEF8 54849 hgsc.bcm.edu 37 16 90020723 90020723 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEF8 54849 hgsc.bcm.edu 37 16 90025607 90025607 + Silent SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEFA1B 728358 broad.mit.edu 37 8 6873414 6873414 + 3'UTR SNP A G G rs9592 bycluster TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEFA4 1669 broad.mit.edu;ucsc.edu 37 8 6793661 6793661 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEFB105A 245908 hgsc.bcm.edu 37 8 7679549 7679549 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEFB107A 245910 hgsc.bcm.edu 37 8 7673126 7673126 + Missense_Mutation SNP C C A rs2246582 bycluster;byfrequency TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEFB108B 245911 broad.mit.edu;hgsc.bcm.edu 37 11 71548458 71548458 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB114 245928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49928062 49928062 + Silent SNP G G T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB115 245929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 29847316 29847316 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB116 245930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 29891069 29891069 + Silent SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB116 245930 broad.mit.edu;ucsc.edu 37 20 29891177 29891177 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEFB123 245936 broad.mit.edu;hgsc.bcm.edu 37 20 30028442 30028442 + 5'UTR SNP T T A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB123 245936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30037860 30037860 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB126 81623 hgsc.bcm.edu 37 20 126314 126314 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEFB129 140881 broad.mit.edu;ucsc.edu 37 20 207960 207960 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEFB4A 1673 hgsc.bcm.edu 37 8 7754021 7754021 + Silent SNP T T C rs2740090 bycluster;byfrequency TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEFB4A 1673 hgsc.bcm.edu 37 8 7754021 7754021 + Silent SNP T T C rs2740090 bycluster;byfrequency TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEGS1 8560 broad.mit.edu 37 1 224363513 224363513 + 5'UTR SNP G T T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEGS1 8560 broad.mit.edu 37 1 224363513 224363513 + 5'UTR SNP G T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEGS1 8560 broad.mit.edu 37 1 224363513 224363513 + 5'UTR SNP G T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEGS1 8560 broad.mit.edu 37 1 224363555 224363555 + 5'UTR SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEGS1 8560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 224377767 224377767 + Missense_Mutation SNP G G A rs188450448 by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEGS1 8560 hgsc.bcm.edu 37 1 224377848 224377848 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEM1 0 broad.mit.edu;ucsc.edu 37 1 40980259 40980259 + Missense_Mutation SNP T G G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEM1 0 hgsc.bcm.edu 37 1 40981245 40981246 + Frame_Shift_Ins INS - - G novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEM1 0 hgsc.bcm.edu;ucsc.edu 37 1 40980774 40980783 + Frame_Shift_Del DEL TACAGCCAAG TACAGCCAAG - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 TACAGCCAAG TACAGCCAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND1A 57706 broad.mit.edu 37 9 126144388 126144388 + Missense_Mutation SNP G A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND1A 57706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 126143757 126143757 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND1A 57706 hgsc.bcm.edu 37 9 126146189 126146197 + Frame_Shift_Del DEL CGGCCTGTC CGGCCTGTC - novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 CGGCCTGTC CGGCCTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND1A 57706 hgsc.bcm.edu 37 9 126146189 126146197 + Frame_Shift_Del DEL CGGCCTGTC CGGCCTGTC - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 CGGCCTGTC CGGCCTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND1B 163486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197704715 197704715 + 3'UTR SNP C C A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND1C 79958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6467832 6467832 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND1C 79958 broad.mit.edu;ucsc.edu 37 19 6467951 6467951 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND1C 79958 hgsc.bcm.edu 37 19 6477067 6477067 + Intron SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DENND2A 27147 broad.mit.edu 37 7 140301430 140301430 + Silent SNP A C C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND2A 27147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 140301525 140301525 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2C 163259 broad.mit.edu 37 1 115127989 115127989 + 3'UTR DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND2C 163259 broad.mit.edu 37 1 115151368 115151368 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND2C 163259 broad.mit.edu;hgsc.bcm.edu 37 1 115166246 115166246 + Missense_Mutation SNP C C A novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2C 163259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115144173 115144173 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2D 79961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111734915 111734915 + Silent SNP A A C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2D 79961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111734916 111734916 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2D 79961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111734927 111734927 + Silent SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2D 79961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111741341 111741341 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND2D 79961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111743023 111743023 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND3 22898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142178354 142178354 + Silent SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND3 22898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142186848 142186848 + Silent SNP C C A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4A 10260 broad.mit.edu;hgsc.bcm.edu 37 15 65954291 65954291 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4A 10260 broad.mit.edu;hgsc.bcm.edu 37 15 65957783 65957783 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4A 10260 broad.mit.edu;hgsc.bcm.edu 37 15 65983198 65983198 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4A 10260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65959941 65959942 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4A 10260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 66044741 66044741 + Silent SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4A 10260 broad.mit.edu;ucsc.edu 37 15 65957694 65957694 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND4A 10260 broad.mit.edu;ucsc.edu 37 15 66023980 66023980 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND4B 9909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153913052 153913052 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4B 9909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153916542 153916542 + Silent SNP A A T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4B 9909 hgsc.bcm.edu 37 1 153907297 153907297 + Silent SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4C 55667 broad.mit.edu 37 9 19371987 19371987 + Intron SNP T G G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND4C 55667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 19305459 19305459 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND4C 55667 hgsc.bcm.edu 37 9 19331996 19331996 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DENND5A 23258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9225842 9225842 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND5A 23258 broad.mit.edu;ucsc.edu 37 11 9161237 9161237 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENND5B 160518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 31540556 31540556 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND5B 160518 hgsc.bcm.edu 37 12 31540654 31540654 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DENND5B 160518 hgsc.bcm.edu;ucsc.edu 37 12 31540603 31540603 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DENND5B 160518 hgsc.bcm.edu;ucsc.edu 37 12 31540692 31540692 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DENR 8562 broad.mit.edu 37 12 123254062 123254062 + 3'UTR DEL T - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DENR 8562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123238330 123238330 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEPDC1B 55789 hgsc.bcm.edu 37 5 59895075 59895075 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEPDC1B 55789 hgsc.bcm.edu 37 5 59982922 59982922 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEPDC1(dist=1181286) 0 broad.mit.edu;hgsc.bcm.edu 37 1 70144085 70144085 + IGR SNP A A G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DEPDC4 120863 broad.mit.edu 37 12 100646135 100646135 + 3'UTR DEL A - - rs140688598 bycluster;by1000genomes TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEPDC4 120863 broad.mit.edu 37 12 100646135 100646135 + 3'UTR DEL A - - rs140688598 bycluster;by1000genomes TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEPDC4 120863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100660755 100660755 + Silent SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEPDC5 9681 broad.mit.edu 37 22 32211692 32211692 + Intron DEL T - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEPDC5 9681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32188047 32188047 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEPDC5 9681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32198825 32198825 + Splice_Site SNP G G C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DEPDC5 9681 hgsc.bcm.edu 37 22 32211391 32211391 + Intron SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEPDC6 0 broad.mit.edu 37 8 120886012 120886012 + 5'UTR SNP T C C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DEPDC6 0 hgsc.bcm.edu;ucsc.edu 37 8 121021276 121021276 + Silent SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DEPTOR 64798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 121019105 121019105 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DERL1 79139 broad.mit.edu 37 8 124031368 124031368 + Intron SNP C T T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DERL2 51009 hgsc.bcm.edu;ucsc.edu 37 17 5383897 5383897 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DERL3 91319 broad.mit.edu;hgsc.bcm.edu 37 22 24176989 24176989 + 3'UTR SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DERL3 91319 broad.mit.edu;ucsc.edu 37 22 24179339 24179339 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DES 1674 broad.mit.edu 37 2 220290785 220290785 + 3'UTR SNP C T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DET1 55070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89056233 89056233 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DET1 55070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89070834 89070834 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DFFA 1676 broad.mit.edu 37 1 10521380 10521380 + 3'UTR DEL A - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DFFA 1676 broad.mit.edu 37 1 10521380 10521380 + 3'UTR DEL A - - novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DFFB 1677 broad.mit.edu 37 1 3800477 3800477 + 3'UTR DEL G - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DFFB 1677 broad.mit.edu 37 1 3800477 3800477 + 3'UTR DEL G - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DFNA5 1687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 24738852 24738852 + Silent SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DFNA5 1687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 24758693 24758693 + Silent SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DFNA5 1687 hgsc.bcm.edu;ucsc.edu 37 7 24756899 24756899 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DFNA5 1687 hgsc.bcm.edu;ucsc.edu 37 7 24784219 24784219 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DFNB31 25861 broad.mit.edu 37 9 117165567 117165567 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DFNB31 25861 hgsc.bcm.edu 37 9 117165103 117165103 + Silent SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DFNB31 25861 hgsc.bcm.edu 37 9 117166206 117166206 + Missense_Mutation SNP G G T rs2274158 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DFNB31 25861 hgsc.bcm.edu 37 9 117168640 117168640 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DFNB31 25861 hgsc.bcm.edu 37 9 117169033 117169033 + Missense_Mutation SNP A A G rs942519 bycluster;byfrequency;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DFNB31 25861 hgsc.bcm.edu 37 9 117185698 117185699 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DFNB59 494513 hgsc.bcm.edu 37 2 179322315 179322315 + Intron SNP T T A rs75932439 unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DGAT1 8694 broad.mit.edu;hgsc.bcm.edu 37 8 145540325 145540325 + Silent SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGAT2 84649 broad.mit.edu 37 11 75511694 75511694 + 3'UTR DEL T - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DGCR2 9993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 19076918 19076918 + Silent SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGCR6L 85359 broad.mit.edu 37 22 20307319 20307319 + Silent SNP A G G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DGCR8 54487 hgsc.bcm.edu;ucsc.edu 37 22 20074764 20074764 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DGKA 1606 broad.mit.edu 37 12 56330142 56330142 + Intron SNP A G G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DGKB 1607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 14378224 14378224 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKB 1607 hgsc.bcm.edu;ucsc.edu 37 7 14669909 14669909 + Intron SNP A A T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DGKB 1607 hgsc.bcm.edu;ucsc.edu 37 7 14880860 14880860 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DGKG 1608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 185882703 185882703 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DGKH 160851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42740809 42740809 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKH 160851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42773767 42773767 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKK 139189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50147057 50147057 + Silent SNP G G T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKK 139189 hgsc.bcm.edu 37 X 50213423 50213423 + Silent SNP T T A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKQ 1609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 954842 954842 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKZ 8525 broad.mit.edu 37 11 46388175 46388175 + Silent SNP G A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DGKZ 8525 broad.mit.edu 37 11 46401517 46401517 + 3'UTR SNP A G G rs72623327 bycluster TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DGKZ 8525 broad.mit.edu;hgsc.bcm.edu 37 11 46389268 46389268 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGKZ 8525 broad.mit.edu;ucsc.edu 37 11 46401080 46401080 + Missense_Mutation SNP G A A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DGUOK 1716 hgsc.bcm.edu 37 2 74154003 74154003 + 5'UTR SNP C C G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DGUOK 1716 hgsc.bcm.edu;ucsc.edu 37 2 74173854 74173854 + Silent SNP T T A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHCR24 1718 broad.mit.edu;hgsc.bcm.edu 37 1 55317854 55317854 + 3'UTR SNP G G C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHCR24 1718 broad.mit.edu;hgsc.bcm.edu 37 1 55331164 55331164 + Intron SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHCR7 1717 broad.mit.edu;hgsc.bcm.edu 37 11 71153366 71153366 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHCR7 1717 hgsc.bcm.edu 37 11 71152418 71152418 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHDDS 79947 hgsc.bcm.edu 37 1 26784058 26784058 + Intron SNP A A T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHDH 27294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49439432 49439433 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHDH 27294 hgsc.bcm.edu 37 19 49439433 49439433 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHDH 27294 hgsc.bcm.edu 37 19 49447699 49447699 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHDPSL 0 broad.mit.edu 37 10 99359576 99359576 + Intron SNP G T T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHODH 1723 broad.mit.edu 37 16 72058292 72058294 + 3'UTR DEL AAC - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHODH 1723 broad.mit.edu 37 16 72058296 72058312 + 3'UTR DEL GCATTTTTGATTCTTTG - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 GCATTTTTGATTCTTTG GCATTTTTGATTCTTTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS1 115817 broad.mit.edu 37 14 24760009 24760009 + 3'UTR SNP G A A rs4568 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS13 147015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27228249 27228249 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHRS13 147015 broad.mit.edu;ucsc.edu 37 17 27225663 27225663 + Silent SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS2 10202 hgsc.bcm.edu 37 14 24108525 24108525 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHRS4 10901 broad.mit.edu 37 14 24424160 24424160 + Intron SNP C T T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS4 10901 broad.mit.edu 37 14 24424420 24424420 + Missense_Mutation SNP C T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS4 10901 broad.mit.edu 37 14 24475265 24475265 + 3'UTR SNP T C C rs3183060 unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS4 10901 broad.mit.edu 37 14 24475265 24475265 + 3'UTR SNP T C C rs3183060 unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHRS4 10901 broad.mit.edu;hgsc.bcm.edu 37 14 24424292 24424292 + Silent SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHRS4L1 728635 broad.mit.edu;hgsc.bcm.edu 37 14 24518003 24518003 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHRS4L1 728635 hgsc.bcm.edu 37 14 24513063 24513063 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHRS4L2 317749 broad.mit.edu;hgsc.bcm.edu 37 14 24459472 24459472 + Silent SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHRS4L2 317749 hgsc.bcm.edu 37 14 24470690 24470691 + Frame_Shift_Ins INS - - A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHRS4L2 317749 hgsc.bcm.edu;ucsc.edu 37 14 24464310 24464310 + Missense_Mutation SNP C C A rs61999853 bycluster;byfrequency;by1000genomes TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHRS7C 201140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 9674867 9674867 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHRS7C 201140 hgsc.bcm.edu 37 17 9674803 9674803 + 3'UTR SNP A A G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHTKD1 55526 broad.mit.edu 37 10 12111026 12111026 + 5'UTR SNP G T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHTKD1 55526 broad.mit.edu;hgsc.bcm.edu 37 10 12111000 12111000 + 5'UTR SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHTKD1 55526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12142206 12142206 + Silent SNP C C A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHTKD1 55526 hgsc.bcm.edu 37 10 12139743 12139743 + Silent SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX15 1665 broad.mit.edu 37 4 24529461 24529461 + 3'UTR DEL C - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX15 1665 broad.mit.edu 37 4 24534816 24534816 + Intron SNP G T T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX15 1665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24541862 24541862 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX15 1665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24572443 24572443 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX15 1665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24572444 24572444 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX29 54505 broad.mit.edu 37 5 54552206 54552206 + 3'UTR SNP G A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX29 54505 broad.mit.edu 37 5 54552206 54552206 + 3'UTR SNP G A A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX29 54505 broad.mit.edu 37 5 54552206 54552206 + 3'UTR SNP G A A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX29 54505 broad.mit.edu 37 5 54603477 54603477 + 5'UTR SNP T A A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX29 54505 broad.mit.edu;hgsc.bcm.edu 37 5 54579538 54579538 + Silent SNP T T C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX29 54505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54585151 54585151 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX29 54505 broad.mit.edu;ucsc.edu 37 5 54579287 54579287 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX29 54505 hgsc.bcm.edu;ucsc.edu 37 5 54569200 54569201 + Frame_Shift_Ins INS - - TA novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX30 22907 broad.mit.edu;ucsc.edu 37 3 47887677 47887677 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX30 22907 hgsc.bcm.edu;ucsc.edu 37 3 47891146 47891146 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX32 55760 hgsc.bcm.edu;ucsc.edu 37 10 127530464 127530464 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX32 55760 hgsc.bcm.edu;ucsc.edu 37 10 127548370 127548370 + Silent SNP G G C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX33 56919 broad.mit.edu 37 17 5364623 5364625 + Intron DEL CTT - - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX33 56919 broad.mit.edu 37 17 5364627 5364627 + Intron DEL T - - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX33 56919 broad.mit.edu 37 17 5372140 5372140 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX34 9704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47856562 47856562 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX34 9704 hgsc.bcm.edu 37 19 47856609 47856609 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX34 9704 hgsc.bcm.edu 37 19 47861187 47861187 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX35 60625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37630475 37630475 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX35 60625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37630476 37630476 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX35 60625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37632409 37632409 + Silent SNP T T A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX35 60625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37650496 37650496 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX35 60625 hgsc.bcm.edu 37 20 37597791 37597791 + Silent SNP G G T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX35 60625 hgsc.bcm.edu;ucsc.edu 37 20 37623522 37623523 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX36 170506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154018456 154018456 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX36 170506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154018911 154018911 + Missense_Mutation SNP A A T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX36 170506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154022915 154022915 + Silent SNP T T A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX36 170506 hgsc.bcm.edu 37 3 154033897 154033897 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX36 170506 hgsc.bcm.edu;ucsc.edu 37 3 153994678 153994678 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX36 170506 hgsc.bcm.edu;ucsc.edu 37 3 154018902 154018902 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX37 57647 broad.mit.edu 37 12 125465134 125465134 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX37 57647 broad.mit.edu 37 12 125465270 125465272 + In_Frame_Del DEL CTC - - novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX37 57647 broad.mit.edu 37 12 125473494 125473494 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX37 57647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125435351 125435351 + Splice_Site SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX37 57647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125438720 125438720 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX37 57647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125462030 125462030 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX37 57647 hgsc.bcm.edu 37 12 125448980 125448980 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX37 57647 hgsc.bcm.edu 37 12 125449470 125449470 + Splice_Region SNP G G A rs73229567 bycluster;byfrequency;by1000genomes TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX37 57647 hgsc.bcm.edu 37 12 125455876 125455876 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX37 57647 hgsc.bcm.edu;ucsc.edu 37 12 125435249 125435249 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX40 79665 hgsc.bcm.edu 37 17 57656854 57656854 + Silent SNP C C T rs2697409 unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX40 79665 hgsc.bcm.edu 37 17 57656854 57656854 + Silent SNP C C T rs2697409 unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX40 79665 hgsc.bcm.edu 37 17 57676168 57676168 + Silent SNP T T C rs139117700 byfrequency TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX40P1 0 broad.mit.edu 37 17 58066651 58066651 + Silent SNP C T T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX40P1 0 broad.mit.edu 37 17 58091725 58091725 + 5'UTR SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX57 90957 broad.mit.edu 37 2 39088979 39088979 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX57 90957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39075474 39075474 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX58 79132 hgsc.bcm.edu 37 17 40255755 40255756 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX8 1659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41582097 41582097 + Silent SNP G G T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX8 1659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41585811 41585811 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX9 1660 broad.mit.edu 37 1 182812436 182812436 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DHX9 1660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182841497 182841497 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX9 1660 hgsc.bcm.edu;ucsc.edu 37 1 182825719 182825719 + RNA SNP T T C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DHX9 1660 hgsc.bcm.edu;ucsc.edu 37 1 182841491 182841491 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DHX9 1660 hgsc.bcm.edu;ucsc.edu 37 1 182849640 182849640 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIABLO 56616 broad.mit.edu 37 12 122692666 122692666 + 3'UTR DEL A - - novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIAPH1 1729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140954549 140954549 + Silent SNP G G T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIAPH1 1729 hgsc.bcm.edu 37 5 140953563 140953563 + Silent SNP T T A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIAPH1 1729 hgsc.bcm.edu;ucsc.edu 37 5 140905613 140905613 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIAPH2 1730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 96369939 96369939 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIAPH2 1730 hgsc.bcm.edu 37 X 96212938 96212938 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIAPH3 81624 broad.mit.edu 37 13 60240491 60240492 + 3'UTR INS - A A rs34390052 unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIAPH3 81624 broad.mit.edu;hgsc.bcm.edu 37 13 60584726 60584726 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIAPH3 81624 hgsc.bcm.edu 37 13 60385029 60385030 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIAPH3 81624 hgsc.bcm.edu 37 13 60566604 60566604 + Intron SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIAPH3 81624 hgsc.bcm.edu 37 13 60616944 60616944 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DICER1 23405 broad.mit.edu;ucsc.edu 37 14 95557550 95557550 + Silent SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DICER1 23405 hgsc.bcm.edu 37 14 95577719 95577719 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DICER1 23405 hgsc.bcm.edu 37 14 95597894 95597894 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DICER1 23405 hgsc.bcm.edu;ucsc.edu 37 14 95582928 95582928 + Silent SNP A A G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIDO1 11083 hgsc.bcm.edu 37 20 61513427 61513438 + In_Frame_Del DEL GCTGCTGTTGTG GCTGCTGTTGTG - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 GCTGCTGTTGTG GCTGCTGTTGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIDO1 11083 hgsc.bcm.edu 37 20 61526431 61526431 + Silent SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIDO1 11083 hgsc.bcm.edu 37 20 61526431 61526431 + Silent SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIDO1 11083 hgsc.bcm.edu;ucsc.edu 37 20 61527636 61527636 + Silent SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIDO1 11083 hgsc.bcm.edu;ucsc.edu 37 20 61537212 61537212 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIMT1L 0 broad.mit.edu 37 5 61688718 61688718 + Intron SNP G A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIMT1L 0 broad.mit.edu 37 5 61688719 61688719 + Intron SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIO1 1733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54370442 54370442 + Silent SNP A A G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIO2 1734 broad.mit.edu 37 14 80669073 80669073 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIO2 1734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 80669169 80669169 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIO2 1734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 80669184 80669184 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIO2 1734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 80669284 80669284 + Silent SNP A A G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIO2 1734 hgsc.bcm.edu;ucsc.edu 37 14 80669159 80669162 + Frame_Shift_Del DEL ATGC ATGC - novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 ATGC ATGC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIO3 1735 broad.mit.edu 37 14 102028537 102028537 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu 37 21 47981523 47981523 + Intron SNP T G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu 37 21 47981523 47981523 + Intron SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu 37 21 47981523 47981523 + Intron SNP T G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu 37 21 47981523 47981523 + Intron SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu 37 21 47983730 47983730 + Intron SNP C A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu 37 21 47983731 47983731 + Intron SNP A T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47969770 47969770 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2A 23181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47970565 47970565 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2A 23181 broad.mit.edu;ucsc.edu 37 21 47980645 47980645 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2A 23181 hgsc.bcm.edu 37 21 47987406 47987406 + Silent SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIP2B 57609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51084867 51084867 + Silent SNP T T C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2B 57609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51092926 51092926 + Missense_Mutation SNP T T G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2B 57609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51127944 51127944 + Silent SNP T T C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2B 57609 hgsc.bcm.edu 37 12 51072503 51072503 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIP2B 57609 hgsc.bcm.edu;ucsc.edu 37 12 51138438 51138438 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIP2C 22982 broad.mit.edu 37 10 323257 323257 + 3'UTR SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIP2C 22982 broad.mit.edu;hgsc.bcm.edu 37 10 332271 332271 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu 37 10 375486 375486 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 329235 329235 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 375379 375379 + Silent SNP G G T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 375466 375466 + Silent SNP G G C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 390776 390776 + Silent SNP G G T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 430563 430563 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 445051 445051 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DIP2C 22982 broad.mit.edu;ucsc.edu 37 10 409187 409187 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx DIP2C 22982 broad.mit.edu;ucsc.edu 37 10 409240 409240 + Missense_Mutation SNP A T T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIRAS1 148252 broad.mit.edu 37 19 2717063 2717064 + 3'UTR INS - A A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIRAS1 148252 broad.mit.edu 37 19 2717066 2717067 + 3'UTR INS - C C rs3745810 bycluster TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DIRAS1 148252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2717570 2717570 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIRAS1 148252 hgsc.bcm.edu 37 19 2717570 2717570 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIS3 22894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 73335571 73335571 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIS3 22894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 73336063 73336063 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIS3 22894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 73347935 73347935 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DISC1 27185 broad.mit.edu;hgsc.bcm.edu 37 1 231829671 231829671 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DISP1 84976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223178568 223178568 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DISP1 84976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223178702 223178702 + Silent SNP T T C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DISP1 84976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223179160 223179160 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DISP1 84976 hgsc.bcm.edu 37 1 223116653 223116653 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DISP1 84976 hgsc.bcm.edu 37 1 223178162 223178162 + Silent SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DISP1 84976 hgsc.bcm.edu;ucsc.edu 37 1 223116621 223116621 + Silent SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DISP2 85455 broad.mit.edu 37 15 40660395 40660395 + Silent SNP G A A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DISP2 85455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40662245 40662245 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DISP2 85455 hgsc.bcm.edu 37 15 40661375 40661375 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DISP2 85455 hgsc.bcm.edu;ucsc.edu 37 15 40661375 40661375 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DIXDC1 85458 hgsc.bcm.edu 37 11 111835369 111835369 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIXDC1 85458 hgsc.bcm.edu 37 11 111865799 111865800 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIXDC1 85458 hgsc.bcm.edu;ucsc.edu 37 11 111835364 111835365 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DIXDC1 85458 hgsc.bcm.edu;ucsc.edu 37 11 111866795 111866795 + Splice_Region SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DKC1 1736 hgsc.bcm.edu 37 X 154005088 154005089 + In_Frame_Ins INS - - AAG novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DKFZp686A1627 0 broad.mit.edu 37 13 19625310 19625310 + RNA SNP G A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DKFZp686A1627 0 broad.mit.edu 37 13 19626616 19626616 + RNA SNP G T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DKFZp686D0853(dist=18783) 0 hgsc.bcm.edu 37 X 110784410 110784410 + IGR SNP A A T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DKK1 22943 broad.mit.edu 37 10 54074083 54074084 + 5'UTR INS - C C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DKK1 22943 broad.mit.edu 37 10 54074083 54074084 + 5'UTR INS - C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DKK2 27123 hgsc.bcm.edu 37 4 107846995 107846995 + Silent SNP G G T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DKK2 27123 hgsc.bcm.edu;ucsc.edu 37 4 107956637 107956637 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DKKL1 27120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49869088 49869088 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLAT 1737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111915861 111915861 + Splice_Site SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLAT 1737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111915865 111915865 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLAT 1737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111930750 111930750 + Silent SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLC1 10395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 12950255 12950255 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLC1 10395 hgsc.bcm.edu;ucsc.edu 37 8 13072237 13072237 + Intron SNP C C A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLD 1738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107542792 107542792 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLD 1738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107556003 107556003 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLEC1 9940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38163910 38163910 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLEC1 9940 hgsc.bcm.edu 37 3 38139264 38139264 + Silent SNP C C A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLEC1 9940 hgsc.bcm.edu 37 3 38139284 38139284 + Missense_Mutation SNP G G C rs183009787 by1000genomes;alternate_allele TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLEC1 9940 hgsc.bcm.edu 37 3 38141827 38141827 + Silent SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLEC1 9940 hgsc.bcm.edu;ucsc.edu 37 3 38138227 38138227 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLEC1 9940 hgsc.bcm.edu;ucsc.edu 37 3 38158548 38158548 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLG1 1739 broad.mit.edu 37 3 196771400 196771400 + 3'UTR SNP G A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLG1 1739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196842954 196842954 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLG2 1740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 83544667 83544667 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLG2 1740 hgsc.bcm.edu 37 11 84028081 84028081 + Intron SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLG3 1741 broad.mit.edu 37 X 69722885 69722886 + 3'UTR INS - G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLG4 1742 broad.mit.edu 37 17 7111517 7111517 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLG5 9231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 79553777 79553777 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLG5 9231 hgsc.bcm.edu;ucsc.edu 37 10 79556277 79556277 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLGAP1 9229 broad.mit.edu 37 18 3596703 3596703 + Intron DEL A - - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLGAP1 9229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 3502638 3502638 + Silent SNP A A G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLGAP1 9229 hgsc.bcm.edu 37 18 3742493 3742493 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLGAP1 9229 hgsc.bcm.edu 37 18 3845287 3845287 + Intron SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLGAP1 9229 hgsc.bcm.edu;ucsc.edu 37 18 3582181 3582181 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLGAP2 9228 hgsc.bcm.edu 37 8 1626460 1626461 + In_Frame_Ins INS - - CAC novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLGAP3 58512 hgsc.bcm.edu;ucsc.edu 37 1 35365794 35365799 + In_Frame_Del DEL GCTGCC GCTGCC - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 GCTGCC GCTGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLGAP4 22839 hgsc.bcm.edu 37 20 35060891 35060891 + Silent SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLGAP5 9787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55625310 55625310 + Silent SNP T T C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLGAP5 9787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55655785 55655785 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLGAP5 9787 hgsc.bcm.edu;ucsc.edu 37 14 55625420 55625420 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLK1 8788 broad.mit.edu;hgsc.bcm.edu 37 14 101201286 101201286 + 3'UTR SNP T T C rs145282046 by1000genomes TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLK2 65989 broad.mit.edu;hgsc.bcm.edu 37 6 43418521 43418521 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLL1 28514 hgsc.bcm.edu 37 6 170592784 170592784 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLL3 10683 broad.mit.edu 37 19 39998732 39998732 + 3'UTR SNP C G G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLL4 54567 broad.mit.edu 37 15 41222315 41222315 + Splice_Site SNP G T T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLL4 54567 broad.mit.edu;hgsc.bcm.edu 37 15 41223809 41223809 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLL4 54567 hgsc.bcm.edu 37 15 41228880 41228880 + Silent SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DLST 1743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75359600 75359601 + Frame_Shift_Ins INS - - A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLX2 1746 hgsc.bcm.edu 37 2 172967128 172967129 + In_Frame_Ins INS - - GCT novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLX3 1747 broad.mit.edu;hgsc.bcm.edu 37 17 48069215 48069215 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLX4 1748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48050513 48050513 + Silent SNP G G C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DLX5 1749 broad.mit.edu 37 7 96649884 96649885 + 3'UTR INS - G G rs112772747 bycluster;by1000genomes TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DLX6 1750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 96639202 96639202 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMAP1 55929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44684379 44684379 + Silent SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMBT1 1755 hgsc.bcm.edu 37 10 124340398 124340398 + Silent SNP G G T rs113864071 unknown;alternate_allele TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMBT1 1755 hgsc.bcm.edu 37 10 124345866 124345866 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMBT1 1755 hgsc.bcm.edu 37 10 124358420 124358420 + Silent SNP C C G rs2277242 bycluster;byfrequency;by1000genomes TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMBT1 1755 hgsc.bcm.edu;ucsc.edu 37 10 124351826 124351826 + Missense_Mutation SNP A A G rs190617825 by1000genomes TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMBX1 127343 hgsc.bcm.edu 37 1 46976717 46976717 + Silent SNP C C T rs12045245 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMC1 11144 hgsc.bcm.edu;ucsc.edu 37 22 38964187 38964187 + Intron SNP T T A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMC1 11144 hgsc.bcm.edu;ucsc.edu 37 22 38964189 38964189 + Intron SNP T T G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 31187596 31187596 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 31196785 31196785 + Silent SNP C C A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 31241191 31241191 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 31792262 31792262 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 32659673 32659673 + Intron SNP A A G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 32834668 32834668 + Silent SNP A A G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 32862975 32862975 + Silent SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMD 1756 hgsc.bcm.edu 37 X 31496341 31496341 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMD 1756 hgsc.bcm.edu;ucsc.edu 37 X 31947776 31947777 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMGDH 29958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78350168 78350168 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMGDH 29958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78359437 78359437 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMGDH 29958 hgsc.bcm.edu 37 5 78322244 78322244 + Intron SNP A A T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMGDH 29958 hgsc.bcm.edu;ucsc.edu 37 5 78322310 78322310 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMGDH 29958 hgsc.bcm.edu;ucsc.edu 37 5 78328557 78328557 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMKN 93099 broad.mit.edu 37 19 35991482 35991482 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DMKN 93099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36003325 36003325 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMKN 93099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36003526 36003526 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMKN 93099 hgsc.bcm.edu 37 19 36002423 36002423 + Missense_Mutation SNP C C T rs145440628 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMKN 93099 hgsc.bcm.edu;ucsc.edu 37 19 36002673 36002673 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMKN 93099 hgsc.bcm.edu;ucsc.edu 37 19 36003991 36003991 + Silent SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMP1 1758 broad.mit.edu 37 4 88583134 88583134 + Silent SNP C T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DMPK 1760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46281778 46281778 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMRT2 10655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 1056689 1056689 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMRT2 10655 hgsc.bcm.edu 37 9 1055746 1055746 + Missense_Mutation SNP A A G rs112564390 unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMRT3 58524 hgsc.bcm.edu;ucsc.edu 37 9 990589 990589 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMRTA1 63951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 22451073 22451073 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMRTB1 63948 hgsc.bcm.edu 37 1 53927263 53927263 + Missense_Mutation SNP C G G rs146520630 unknown;alternate_allele TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMTF1 9988 broad.mit.edu 37 7 86811354 86811354 + Intron DEL T - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DMTF1 9988 broad.mit.edu;hgsc.bcm.edu 37 7 86811528 86811528 + RNA SNP C C G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMTF1 9988 hgsc.bcm.edu;ucsc.edu 37 7 86802901 86802901 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMXL1 1657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118484562 118484562 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL1 1657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118502399 118502399 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL1 1657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118502425 118502425 + Silent SNP A A G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL1 1657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118560454 118560454 + Silent SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL1 1657 hgsc.bcm.edu;ucsc.edu 37 5 118456679 118456679 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMXL1 1657 hgsc.bcm.edu;ucsc.edu 37 5 118506224 118506224 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMXL1 1657 hgsc.bcm.edu;ucsc.edu 37 5 118506472 118506472 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51741365 51741365 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51758414 51758414 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51778458 51778458 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51778460 51778460 + Silent SNP A A G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51791649 51791649 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51837940 51837940 + Nonsense_Mutation SNP A A C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51839582 51839582 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DMXL2 23312 hgsc.bcm.edu;ucsc.edu 37 15 51773209 51773209 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DMXL2 23312 hgsc.bcm.edu;ucsc.edu 37 15 51790800 51790800 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNA2 1763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70227941 70227941 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAAF1 123872 hgsc.bcm.edu;ucsc.edu 37 16 84211399 84211399 + Silent SNP T T C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH10 196385 broad.mit.edu;hgsc.bcm.edu 37 12 124371778 124371778 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH10 196385 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124270368 124270368 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH10 196385 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124272412 124272412 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH10 196385 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124408962 124408962 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH10 196385 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124420000 124420000 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH10 196385 broad.mit.edu;ucsc.edu 37 12 124383326 124383326 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH10 196385 hgsc.bcm.edu;ucsc.edu 37 12 124317763 124317763 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH10 196385 hgsc.bcm.edu;ucsc.edu 37 12 124352543 124352543 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH10 196385 hgsc.bcm.edu;ucsc.edu 37 12 124416393 124416393 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH10 196385 hgsc.bcm.edu;ucsc.edu 37 12 124416606 124416606 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH11 8701 broad.mit.edu 37 7 21908580 21908580 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH11 8701 broad.mit.edu;hgsc.bcm.edu 37 7 21639512 21639512 + Silent SNP C C T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21639591 21639591 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21657267 21657267 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21789334 21789334 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21904264 21904264 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21913067 21913067 + Silent SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 hgsc.bcm.edu 37 7 21742417 21742417 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH11 8701 hgsc.bcm.edu 37 7 21765574 21765574 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH11 8701 hgsc.bcm.edu;ucsc.edu 37 7 21646355 21646355 + Intron SNP A A G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH11 8701 hgsc.bcm.edu;ucsc.edu 37 7 21784607 21784607 + Silent SNP A A T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH12 201625 hgsc.bcm.edu 37 3 57389197 57389197 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH12 201625 hgsc.bcm.edu 37 3 57488136 57488136 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH12 201625 hgsc.bcm.edu;ucsc.edu 37 3 57405106 57405106 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH1 25981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52387249 52387249 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH1 25981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52402795 52402795 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH1 25981 broad.mit.edu;ucsc.edu 37 3 52360871 52360871 + Frame_Shift_Del DEL C - - novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH1 25981 broad.mit.edu;ucsc.edu 37 3 52393986 52393986 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH1 25981 hgsc.bcm.edu 37 3 52418904 52418904 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH14 127602 broad.mit.edu 37 1 225273305 225273305 + Silent SNP T C C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH14 127602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225266907 225266907 + Splice_Site SNP A A T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH14 127602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225288466 225288466 + Silent SNP A A G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH14 127602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225525799 225525799 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH14 127602 hgsc.bcm.edu 37 1 225373072 225373072 + Missense_Mutation SNP C C T rs61851487 bycluster;byfrequency;by1000genomes TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH14 127602 hgsc.bcm.edu 37 1 225380562 225380565 + Frame_Shift_Del DEL AAAG AAAG - rs144339803 by1000genomes TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 AAAG AAAG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH14 127602 hgsc.bcm.edu 37 1 225380562 225380565 + Frame_Shift_Del DEL AAAG AAAG - rs144339803 by1000genomes TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 AAAG AAAG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH14 127602 hgsc.bcm.edu;ucsc.edu 37 1 225155283 225155283 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH14 127602 hgsc.bcm.edu;ucsc.edu 37 1 225373072 225373072 + Missense_Mutation SNP C C T rs61851487 bycluster;byfrequency;by1000genomes TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH14 127602 hgsc.bcm.edu;ucsc.edu 37 1 225586358 225586358 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu 37 17 76451801 76451801 + Silent SNP G A A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH17 8632 broad.mit.edu;hgsc.bcm.edu 37 17 76535832 76535832 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76421493 76421493 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76450661 76450661 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76475699 76475699 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76482488 76482488 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76491993 76491993 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76496393 76496393 + Silent SNP G G A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76506511 76506511 + Silent SNP G G T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 hgsc.bcm.edu 37 17 76486812 76486813 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH17 8632 hgsc.bcm.edu 37 17 76496361 76496361 + Intron SNP C C G rs34124297 bycluster;byfrequency;by1000genomes TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu 37 17 7646597 7646597 + Intron DEL T - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 broad.mit.edu 37 17 7646597 7646597 + Intron DEL T - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 broad.mit.edu 37 17 7646597 7646597 + Intron DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 broad.mit.edu 37 17 7646597 7646597 + Intron DEL T - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 broad.mit.edu 37 17 7658285 7658285 + Intron DEL A - - novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 broad.mit.edu;hgsc.bcm.edu 37 17 7722587 7722587 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7661862 7661862 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7667223 7667223 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7669721 7669721 + Silent SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7680805 7680805 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7681680 7681680 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7701105 7701105 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7727491 7727491 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 broad.mit.edu;ucsc.edu 37 17 7630455 7630455 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 broad.mit.edu;ucsc.edu 37 17 7721647 7721647 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH2 146754 hgsc.bcm.edu;ucsc.edu 37 17 7663182 7663183 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH2 146754 hgsc.bcm.edu;ucsc.edu 37 17 7671377 7671377 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21033334 21033334 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21098199 21098199 + Missense_Mutation SNP G G C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21123085 21123085 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21136611 21136611 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21147728 21147728 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21151927 21151927 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 hgsc.bcm.edu 37 16 21122944 21122944 + Splice_Region SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH3 55567 hgsc.bcm.edu;ucsc.edu 37 16 20966362 20966362 + Missense_Mutation SNP T T A rs34051490 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 hgsc.bcm.edu;ucsc.edu 37 16 20975125 20975125 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH3 55567 hgsc.bcm.edu;ucsc.edu 37 16 20998759 20998759 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH3 55567 hgsc.bcm.edu;ucsc.edu 37 16 21065766 21065766 + Silent SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH3 55567 hgsc.bcm.edu;ucsc.edu 37 16 21117847 21117847 + Silent SNP G G T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH5 1767 broad.mit.edu 37 5 13692053 13692053 + 3'UTR SNP T C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH5 1767 broad.mit.edu 37 5 13708443 13708443 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH5 1767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 13719054 13719054 + Missense_Mutation SNP A A C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH5 1767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 13753411 13753411 + Silent SNP A A T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH5 1767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 13865955 13865955 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH5 1767 hgsc.bcm.edu 37 5 13866368 13866369 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH5 1767 hgsc.bcm.edu;ucsc.edu 37 5 13717541 13717541 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH5 1767 hgsc.bcm.edu;ucsc.edu 37 5 13793789 13793789 + Missense_Mutation SNP T T C rs139797525 unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH5 1767 hgsc.bcm.edu;ucsc.edu 37 5 13830726 13830726 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH5 1767 hgsc.bcm.edu;ucsc.edu 37 5 13883135 13883135 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH5 1767 hgsc.bcm.edu;ucsc.edu 37 5 13922428 13922428 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84756081 84756081 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84780110 84780110 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84880607 84880607 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84912547 84912547 + Silent SNP T T C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH6 1768 broad.mit.edu;ucsc.edu 37 2 84945368 84945368 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH6 1768 hgsc.bcm.edu 37 2 84942765 84942765 + Intron SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH6 1768 hgsc.bcm.edu;ucsc.edu 37 2 84809170 84809170 + Intron SNP A A C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH6 1768 hgsc.bcm.edu;ucsc.edu 37 2 84931422 84931422 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH7 56171 broad.mit.edu 37 2 196602448 196602449 + 3'UTR INS - TTTA TTTA rs10642584 bycluster;by1000genomes TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH7 56171 broad.mit.edu 37 2 196602560 196602560 + 3'UTR DEL A - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH7 56171 broad.mit.edu 37 2 196720578 196720578 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH7 56171 broad.mit.edu;hgsc.bcm.edu 37 2 196723250 196723250 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196620981 196620981 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196642652 196642652 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196729403 196729403 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196737119 196737119 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196750888 196750888 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196753118 196753118 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196837108 196837108 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH7 56171 broad.mit.edu;ucsc.edu 37 2 196737120 196737120 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH7 56171 hgsc.bcm.edu 37 2 196753531 196753531 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH7 56171 hgsc.bcm.edu;ucsc.edu 37 2 196753009 196753009 + Silent SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH8 1769 broad.mit.edu 37 6 38758105 38758105 + Nonsense_Mutation SNP G A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH8 1769 broad.mit.edu 37 6 38889260 38889260 + Missense_Mutation SNP A T T rs147713611 unknown;alternate_allele TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx DNAH8 1769 broad.mit.edu 37 6 38891033 38891033 + Intron SNP T C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH8 1769 broad.mit.edu 37 6 38952247 38952248 + Intron DEL CA - - rs34819199 bycluster;by1000genomes;alternate_allele TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAH8 1769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 38891824 38891824 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH8 1769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 38942198 38942198 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH8 1769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 38952015 38952015 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH8 1769 hgsc.bcm.edu 37 6 38754603 38754603 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH8 1769 hgsc.bcm.edu;ucsc.edu 37 6 38862582 38862582 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID DNAH8 1769 hgsc.bcm.edu;ucsc.edu 37 6 38881667 38881667 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH8 1769 hgsc.bcm.edu;ucsc.edu 37 6 38957910 38957910 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH8 1769 hgsc.bcm.edu;ucsc.edu 37 6 38994431 38994431 + Silent SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAH8 1769 hgsc.bcm.edu;ucsc.edu 37 6 38997960 38997960 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID DNAH9 1770 broad.mit.edu;hgsc.bcm.edu 37 17 11593688 11593688 + Nonsense_Mutation SNP C C T rs144649934 unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11572453 11572453 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11583161 11583161 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11593618 11593618 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11648186 11648186 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11648206 11648206 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11650990 11650990 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11701032 11701032 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11738174 11738174 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11757612 11757612 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11786998 11786998 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11835416 11835416 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11845736 11845736 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAH9 1770 hgsc.bcm.edu;ucsc.edu 37 17 11725796 11725796 + Silent SNP C C G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID DNAH9 1770 hgsc.bcm.edu;ucsc.edu 37 17 11795233 11795233 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DNAI1 27019 broad.mit.edu;hgsc.bcm.edu 37 9 34490013 34490013 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAI1 27019 hgsc.bcm.edu 37 9 34514473 34514473 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJA3 9093 hgsc.bcm.edu;ucsc.edu 37 16 4504893 4504893 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJA4 55466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78565450 78565450 + Silent SNP A A G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJA4 55466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78572439 78572439 + Silent SNP C C G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB11 51726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186299170 186299170 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB11 51726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186299285 186299285 + Silent SNP C C T rs138789127 unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB12 54788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74100574 74100574 + Silent SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB1 3337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14627690 14627690 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB1 3337 hgsc.bcm.edu 37 19 14627478 14627478 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJB1 3337 hgsc.bcm.edu;ucsc.edu 37 19 14627721 14627722 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB13 374407 broad.mit.edu 37 11 73681196 73681196 + 3'UTR SNP C T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJB2 3300 broad.mit.edu 37 2 220146894 220146894 + Intron SNP G T T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJB4 11080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78470926 78470926 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB4 11080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78478852 78478852 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB4 11080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78481792 78481792 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB4 11080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78481811 78481811 + Silent SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB5 25822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34997035 34997035 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB6 10049 broad.mit.edu 37 7 157173694 157173694 + Intron DEL T - - rs10715969 unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJB6 10049 broad.mit.edu 37 7 157178362 157178362 + Intron DEL A - - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJB6 10049 hgsc.bcm.edu 37 7 157160099 157160100 + Frame_Shift_Ins INS - - GA novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB7 150353 broad.mit.edu 37 22 41256863 41256863 + 3'UTR SNP C T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJB8 165721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128181497 128181497 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJB8 165721 hgsc.bcm.edu 37 3 128181552 128181552 + Silent SNP G G A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJB9 4189 broad.mit.edu 37 7 108213939 108213939 + 3'UTR DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJB9 4189 broad.mit.edu 37 7 108213939 108213939 + 3'UTR DEL T - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC10 54431 broad.mit.edu 37 2 183605974 183605974 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC10 54431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183601013 183601013 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC10 54431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183616891 183616891 + Silent SNP A A G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC10 54431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183623959 183623959 + Silent SNP T T C rs140227116 bycluster;by1000genomes TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC10 54431 hgsc.bcm.edu 37 2 183622508 183622508 + Silent SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC10 54431 hgsc.bcm.edu 37 2 183622508 183622508 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC10 54431 hgsc.bcm.edu 37 2 183622513 183622513 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC10 54431 hgsc.bcm.edu;ucsc.edu 37 2 183640093 183640093 + Silent SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC11 55735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6704634 6704634 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC11 55735 broad.mit.edu;ucsc.edu 37 1 6741001 6741001 + Nonsense_Mutation SNP G A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC12 56521 hgsc.bcm.edu;ucsc.edu 37 10 69583118 69583118 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC13 23317 broad.mit.edu 37 3 132257175 132257175 + 3'UTR SNP A T T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC13 23317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132193851 132193851 + Silent SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC13 23317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132245126 132245126 + Splice_Site SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC13 23317 hgsc.bcm.edu;ucsc.edu 37 3 132211264 132211275 + In_Frame_Del DEL GATGATAGAGAA GATGATAGAGAA - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 GATGATAGAGAA GATGATAGAGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC14 85406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56216895 56216895 + Silent SNP T T C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC14 85406 hgsc.bcm.edu 37 12 56221611 56221611 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC14 85406 hgsc.bcm.edu 37 12 56221611 56221611 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC14 85406 hgsc.bcm.edu 37 12 56221621 56221621 + Silent SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC14 85406 hgsc.bcm.edu;ucsc.edu 37 12 56217260 56217260 + Silent SNP A A C novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC14 85406 hgsc.bcm.edu;ucsc.edu 37 12 56221492 56221492 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC15 29103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 43652822 43652822 + Silent SNP A A T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC15 29103 hgsc.bcm.edu;ucsc.edu 37 13 43652746 43652746 + Splice_Site SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC16 23341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 15855691 15855691 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC16 23341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 15893684 15893684 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC1 64215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22193512 22193512 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC17 55192 broad.mit.edu;hgsc.bcm.edu 37 15 41065992 41065992 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC17 55192 hgsc.bcm.edu 37 15 41068801 41068802 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC17 55192 hgsc.bcm.edu;ucsc.edu 37 15 41067819 41067819 + Intron SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC18 202052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138749940 138749940 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC21 134218 hgsc.bcm.edu;ucsc.edu 37 5 34935891 34935892 + Frame_Shift_Del DEL CG CG - novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC21 134218 hgsc.bcm.edu;ucsc.edu 37 5 34937560 34937560 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC2 27000 broad.mit.edu;hgsc.bcm.edu 37 7 102963110 102963110 + Intron SNP A A C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC2 27000 broad.mit.edu;hgsc.bcm.edu 37 7 102982243 102982243 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC2 27000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 102960089 102960089 + Silent SNP T T A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC24 120526 broad.mit.edu 37 11 31436530 31436530 + Intron SNP G A A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC25 548645 broad.mit.edu;hgsc.bcm.edu 37 9 114411754 114411754 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC25-GNG10 552891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114429212 114429212 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC27 51277 broad.mit.edu 37 2 25170158 25170159 + 3'UTR INS - C C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC28 54943 broad.mit.edu 37 21 34860328 34860328 + 3'UTR DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC30 84277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73097664 73097664 + Silent SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC3 5611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 96361504 96361504 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC3 5611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 96438228 96438228 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC5G 285126 hgsc.bcm.edu;ucsc.edu 37 2 27500630 27500630 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID DNAJC6 9829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65831861 65831861 + Silent SNP T T C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC7 7266 broad.mit.edu 37 17 40128479 40128480 + 3'UTR INS - T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC7 7266 broad.mit.edu;ucsc.edu 37 17 40148366 40148366 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC7 7266 hgsc.bcm.edu;ucsc.edu 37 17 40148372 40148372 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNAJC8 22826 hgsc.bcm.edu;ucsc.edu 37 1 28537078 28537078 + Intron SNP A A G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNAJC9 23234 broad.mit.edu 37 10 75002916 75002916 + 3'UTR DEL C - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNAJC9 23234 broad.mit.edu;hgsc.bcm.edu 37 10 75003130 75003130 + 3'UTR SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNALI1 7802 broad.mit.edu 37 1 38030777 38030777 + 3'UTR SNP G A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNALI1 7802 broad.mit.edu 37 1 38032379 38032379 + 3'UTR SNP A T T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNALI1 7802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38022628 38022628 + Silent SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNASE1L2 1775 broad.mit.edu 37 16 2288520 2288520 + 3'UTR SNP A G G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNASE2B 58511 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84864297 84864297 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DND1 373863 broad.mit.edu 37 5 140052285 140052285 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNER 92737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 230411681 230411681 + Nonsense_Mutation SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNER 92737 hgsc.bcm.edu 37 2 230231641 230231641 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 broad.mit.edu;hgsc.bcm.edu 37 11 6585252 6585252 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNHD1 144132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6519865 6519865 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNHD1 144132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6566997 6566997 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNHD1 144132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6592961 6592961 + Silent SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNHD1 144132 hgsc.bcm.edu 37 11 6554304 6554304 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6567885 6567885 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6567890 6567890 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6567893 6567893 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6567893 6567895 + In_Frame_Del DEL GGC GGC - novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6568627 6568627 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6578588 6578588 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6579324 6579326 + In_Frame_Del DEL TGC TGC - novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 TGC TGC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6584780 6584780 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNHD1 144132 hgsc.bcm.edu 37 11 6592218 6592218 + Silent SNP G G T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNM1 1759 broad.mit.edu 37 9 131012518 131012518 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNM1L 10059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32886681 32886681 + Silent SNP T T C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNM1L 10059 hgsc.bcm.edu;ucsc.edu 37 12 32863894 32863894 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNM1L 10059 hgsc.bcm.edu;ucsc.edu 37 12 32884434 32884435 + Frame_Shift_Del INS - - A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNM1P46 196968 hgsc.bcm.edu 37 15 100340121 100340121 + RNA SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNM1P46 196968 hgsc.bcm.edu 37 15 100340159 100340159 + RNA SNP T T G rs12910758 bycluster TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNM1P46 196968 hgsc.bcm.edu 37 15 100340166 100340166 + RNA SNP G G C rs2958979 unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNM1P46 196968 hgsc.bcm.edu 37 15 100340386 100340386 + RNA SNP T T G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNM1P46 196968 hgsc.bcm.edu 37 15 100340393 100340393 + RNA SNP T T C rs2958978 byfrequency;by1000genomes TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNM2 1785 broad.mit.edu 37 19 10935788 10935788 + Missense_Mutation SNP A G G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNM3 26052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171956945 171956945 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMBP 23268 broad.mit.edu 37 10 101635517 101635518 + 3'UTR INS - G G novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNMBP 23268 hgsc.bcm.edu 37 10 101728908 101728908 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNMBP 23268 hgsc.bcm.edu;ucsc.edu 37 10 101728908 101728908 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNMT1 1786 broad.mit.edu 37 19 10246885 10246885 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNMT1 1786 broad.mit.edu 37 19 10257171 10257171 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNMT1 1786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10250366 10250366 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMT1 1786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10262203 10262203 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMT1 1786 hgsc.bcm.edu 37 19 10244940 10244940 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNMT1 1786 hgsc.bcm.edu 37 19 10273416 10273416 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNMT3A 1788 broad.mit.edu 37 2 25470497 25470497 + Missense_Mutation SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNMT3A 1788 broad.mit.edu 37 2 25505226 25505226 + Intron SNP G A A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNMT3A 1788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 25458658 25458658 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMT3A 1788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 25467122 25467122 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMT3A 1788 hgsc.bcm.edu 37 2 25498413 25498413 + Splice_Site SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNMT3A 1788 hgsc.bcm.edu;ucsc.edu 37 2 25467027 25467027 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMT3B 1789 hgsc.bcm.edu 37 20 31384616 31384617 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNMT3B 1789 hgsc.bcm.edu;ucsc.edu 37 20 31386266 31386266 + Silent SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNPEP 23549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220239735 220239735 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNPEP 23549 broad.mit.edu;ucsc.edu 37 2 220239736 220239736 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNTT 1791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98064450 98064450 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNTT 1791 hgsc.bcm.edu 37 10 98064300 98064300 + Missense_Mutation SNP C C G rs148791733 byfrequency;alternate_allele TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DNTTIP1 116092 broad.mit.edu 37 20 44439917 44439917 + 3'UTR SNP C G G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DNTTIP2 30836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94335473 94335473 + Silent SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DNTTIP2 30836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94343391 94343391 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK10 55619 broad.mit.edu 37 2 225661099 225661099 + Silent SNP T C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225637922 225637922 + Silent SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225668898 225668898 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225710302 225710302 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225721605 225721605 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225729384 225729384 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK10 55619 broad.mit.edu;ucsc.edu 37 2 225637922 225637922 + Silent SNP C G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK10 55619 hgsc.bcm.edu 37 2 225684201 225684201 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK10 55619 hgsc.bcm.edu;ucsc.edu 37 2 225761077 225761077 + Silent SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK11 139818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117700143 117700143 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK11 139818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117752678 117752678 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK11 139818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117819736 117819736 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK11 139818 hgsc.bcm.edu 37 X 117707902 117707902 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK1 1793 broad.mit.edu;hgsc.bcm.edu 37 10 128944247 128944247 + Intron SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK1 1793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129160369 129160369 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK1 1793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129202630 129202630 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DOCK2 1794 broad.mit.edu 37 5 169483602 169483602 + Intron SNP G T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK2 1794 broad.mit.edu 37 5 169494626 169494626 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK2 1794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169145692 169145692 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK2 1794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169174444 169174444 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK2 1794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169474616 169474616 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK2 1794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169477270 169477270 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK2 1794 broad.mit.edu;ucsc.edu 37 5 169494675 169494675 + Silent SNP C T T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK2 1794 hgsc.bcm.edu 37 5 169097525 169097525 + Intron SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK3 1795 broad.mit.edu;hgsc.bcm.edu 37 3 51246204 51246204 + Splice_Site SNP G G C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK3 1795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51198060 51198060 + Silent SNP C C T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK3 1795 hgsc.bcm.edu 37 3 50879174 50879174 + Intron SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK3 1795 hgsc.bcm.edu 37 3 51400102 51400102 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK3 1795 hgsc.bcm.edu 37 3 51400103 51400103 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK3 1795 hgsc.bcm.edu;ucsc.edu 37 3 51284171 51284171 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK3 1795 hgsc.bcm.edu;ucsc.edu 37 3 51376390 51376390 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK3 1795 hgsc.bcm.edu;ucsc.edu 37 3 51395479 51395479 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK4 9732 broad.mit.edu 37 7 111367415 111367415 + 3'UTR DEL T - - rs113170416 unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK4 9732 broad.mit.edu;hgsc.bcm.edu 37 7 111517174 111517174 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK4 9732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 111379463 111379463 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK4 9732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 111509659 111509659 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK4 9732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 111555908 111555908 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK4 9732 hgsc.bcm.edu 37 7 111508084 111508084 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK5 80005 broad.mit.edu 37 8 25158135 25158135 + Nonsense_Mutation SNP G T T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOCK5 80005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25167945 25167945 + Silent SNP C C G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK5 80005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25189787 25189787 + Missense_Mutation SNP A A T rs185726789 by1000genomes;alternate_allele TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK6 57572 hgsc.bcm.edu 37 19 11311437 11311437 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK6 57572 hgsc.bcm.edu;ucsc.edu 37 19 11314960 11314960 + Silent SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62961314 62961314 + Silent SNP A A T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62973695 62973695 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62979390 62979390 + Silent SNP A A G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 63021612 63021612 + Missense_Mutation SNP C C T rs78144896 bycluster;by1000genomes;alternate_allele TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 63084419 63084419 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK7 85440 hgsc.bcm.edu;ucsc.edu 37 1 62954615 62954615 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 304680 304680 + Silent SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 340260 340260 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 340261 340261 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 406989 406989 + Silent SNP T T A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK8 81704 hgsc.bcm.edu 37 9 311956 311957 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK8 81704 hgsc.bcm.edu 37 9 311956 311957 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK8 81704 hgsc.bcm.edu;ucsc.edu 37 9 418160 418160 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOCK9 23348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 99505670 99505670 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOK1 1796 broad.mit.edu 37 2 74782263 74782264 + Intron DEL CT - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOK2 9046 broad.mit.edu 37 8 21766658 21766659 + 3'UTR DEL GT - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOK3 79930 hgsc.bcm.edu 37 5 176930172 176930174 + In_Frame_Del DEL GAG GAG - rs138153794 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOK3 79930 hgsc.bcm.edu 37 5 176932106 176932107 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOK4 55715 broad.mit.edu;hgsc.bcm.edu 37 16 57509863 57509863 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOK7 285489 broad.mit.edu 37 4 3494670 3494671 + Frame_Shift_Ins INS - A A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOK7 285489 broad.mit.edu;ucsc.edu 37 4 3478155 3478155 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOK7 285489 hgsc.bcm.edu;ucsc.edu 37 4 3487325 3487325 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOLPP1 57171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131851258 131851258 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOLPP1 57171 hgsc.bcm.edu 37 9 131848530 131848530 + Missense_Mutation SNP C C T rs140111931 unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOM3Z 1797 broad.mit.edu;hgsc.bcm.edu 37 6 31939426 31939426 + Silent SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOM3Z 1797 hgsc.bcm.edu;ucsc.edu 37 6 31939209 31939209 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DONSON 29980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34956957 34956957 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DONSON 29980 hgsc.bcm.edu 37 21 34955918 34955918 + Nonsense_Mutation SNP A A C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DONSON 29980 hgsc.bcm.edu 37 21 34955920 34955920 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DOPEY1 23033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 83823098 83823098 + Silent SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOPEY1 23033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 83823121 83823121 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOPEY1 23033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 83838711 83838711 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOPEY1 23033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 83872600 83872600 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOPEY2 9980 broad.mit.edu 37 21 37653892 37653892 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOPEY2 9980 broad.mit.edu 37 21 37653892 37653892 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOPEY2 9980 broad.mit.edu 37 21 37653892 37653892 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOPEY2 9980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37603371 37603371 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOPEY2 9980 hgsc.bcm.edu;ucsc.edu 37 21 37617853 37617854 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOT1L 84444 broad.mit.edu 37 19 2229711 2229711 + Intron SNP C A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOT1L 84444 broad.mit.edu 37 19 2229711 2229711 + Intron SNP C A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOT1L 84444 broad.mit.edu 37 19 2229711 2229711 + Intron SNP C A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOT1L 84444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2211150 2211150 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOT1L 84444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2214517 2214517 + Silent SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOT1L 84444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2223398 2223398 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DOT1L 84444 broad.mit.edu;ucsc.edu 37 19 2229790 2229790 + Nonstop_Mutation SNP A C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DOT1L 84444 hgsc.bcm.edu 37 19 2202790 2202790 + Intron SNP T T G rs73514500 bycluster;by1000genomes;alternate_allele TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPAGT1 1798 broad.mit.edu 37 11 118972074 118972074 + Intron SNP C A A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPAGT1 1798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118968667 118968667 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPAGT1 1798 hgsc.bcm.edu 37 11 118972218 118972219 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 broad.mit.edu;hgsc.bcm.edu 37 6 30917885 30917885 + Silent SNP C C G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30916609 30916609 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DPCR1 135656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30919792 30919792 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 hgsc.bcm.edu 37 6 30917388 30917388 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 hgsc.bcm.edu 37 6 30917388 30917388 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 hgsc.bcm.edu 37 6 30917574 30917574 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 hgsc.bcm.edu 37 6 30918543 30918545 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 hgsc.bcm.edu 37 6 30918748 30918748 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPCR1 135656 hgsc.bcm.edu;ucsc.edu 37 6 30918543 30918545 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPEP2 64174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68026474 68026474 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPEP3 64180 hgsc.bcm.edu;ucsc.edu 37 16 68012420 68012420 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPF2 5977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65113420 65113420 + Silent SNP A A C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPF3 8110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73141008 73141008 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPH2 1802 broad.mit.edu 37 1 44436377 44436377 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPH2 1802 broad.mit.edu 37 1 44438317 44438317 + 3'UTR SNP C G G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPH5 51611 hgsc.bcm.edu;ucsc.edu 37 1 101487262 101487262 + Silent SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPM1 8813 hgsc.bcm.edu 37 20 49574946 49574946 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPM2 8818 hgsc.bcm.edu;ucsc.edu 37 9 130698858 130698858 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPP10 57628 broad.mit.edu 37 2 115200295 115200295 + 5'UTR SNP T C C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPP10 57628 broad.mit.edu 37 2 115200296 115200296 + 5'UTR SNP T A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPP10 57628 broad.mit.edu;hgsc.bcm.edu 37 2 116510751 116510751 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP10 57628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 116485484 116485484 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP10 57628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 116485485 116485485 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP10 57628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 116594279 116594279 + Silent SNP C C A rs138029087 unknown;alternate_allele TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DPP10 57628 hgsc.bcm.edu 37 2 116594071 116594071 + Intron SNP C C T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPP10 57628 hgsc.bcm.edu;ucsc.edu 37 2 116101463 116101463 + Missense_Mutation SNP C C G rs143448690 unknown;alternate_allele TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP10 57628 hgsc.bcm.edu;ucsc.edu 37 2 116510852 116510852 + Silent SNP C C G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPP3 10072 broad.mit.edu;hgsc.bcm.edu 37 11 66255471 66255471 + Silent SNP T T A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP4 1803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162894910 162894910 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP4 1803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162902066 162902066 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP4 1803 hgsc.bcm.edu;ucsc.edu 37 2 162865775 162865775 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPP6 1804 broad.mit.edu;hgsc.bcm.edu 37 7 154379787 154379787 + Intron SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP6 1804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 154172047 154172047 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP6 1804 hgsc.bcm.edu;ucsc.edu 37 7 154561188 154561188 + Silent SNP C C T rs56091483 bycluster;byfrequency;by1000genomes TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP8 54878 broad.mit.edu 37 15 65738954 65738955 + 3'UTR INS - T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPP8 54878 hgsc.bcm.edu;ucsc.edu 37 15 65780068 65780068 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPP8 54878 hgsc.bcm.edu;ucsc.edu 37 15 65804777 65804777 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPP9 91039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4704158 4704158 + Silent SNP G G A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP9 91039 broad.mit.edu;ucsc.edu 37 19 4719861 4719861 + Splice_Site SNP A T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPP9 91039 hgsc.bcm.edu 37 19 4703896 4703916 + In_Frame_Del DEL ACCTTGGTGGCAGAAGGTCAG ACCTTGGTGGCAGAAGGTCAG - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 ACCTTGGTGGCAGAAGGTCAG ACCTTGGTGGCAGAAGGTCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPP9 91039 hgsc.bcm.edu;ucsc.edu 37 19 4719879 4719879 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPPA2 151871 hgsc.bcm.edu;ucsc.edu 37 3 109031461 109031461 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPPA2 151871 hgsc.bcm.edu;ucsc.edu 37 3 109031497 109031503 + Frame_Shift_Del DEL AAATCAC AAATCAC - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 AAATCAC AAATCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPPA3 359787 broad.mit.edu;hgsc.bcm.edu 37 12 7869602 7869602 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPT 1805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168698362 168698362 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPY19L1 23333 broad.mit.edu;hgsc.bcm.edu 37 7 34981390 34981390 + Missense_Mutation SNP A A G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPY19L1 23333 broad.mit.edu;hgsc.bcm.edu 37 7 35029520 35029520 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPY19L1 23333 broad.mit.edu;ucsc.edu 37 7 35057549 35057549 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L1 23333 hgsc.bcm.edu 37 7 35057542 35057542 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPY19L2 283417 hgsc.bcm.edu 37 12 63994073 63994073 + Intron SNP A A G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPY19L2 283417 hgsc.bcm.edu 37 12 64062052 64062052 + Missense_Mutation SNP G G A rs10878074 bycluster;byfrequency;by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPY19L2P1 554236 broad.mit.edu 37 7 35144349 35144349 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L2P1 554236 broad.mit.edu 37 7 35221082 35221082 + 5'UTR SNP C A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L2P2 349152 broad.mit.edu 37 7 102815704 102815705 + 3'UTR DEL TG - - novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L2P2 349152 broad.mit.edu 37 7 102815705 102815705 + 3'UTR DEL G - - novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L2P2 349152 broad.mit.edu 37 7 102920300 102920300 + 5'UTR DEL G - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L3 147991 broad.mit.edu 37 19 32902567 32902567 + Intron DEL A - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L3 147991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 32968514 32968514 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPY19L3 147991 hgsc.bcm.edu 37 19 32949399 32949399 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPY19L3 147991 hgsc.bcm.edu;ucsc.edu 37 19 32948994 32948994 + Intron SNP T T C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPY19L4 286148 broad.mit.edu;ucsc.edu 37 8 95777480 95777480 + Missense_Mutation SNP G T T rs144794373 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L4 286148 broad.mit.edu;ucsc.edu 37 8 95777481 95777481 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPY19L4 286148 hgsc.bcm.edu 37 8 95793334 95793334 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPYD 1806 broad.mit.edu 37 1 97544339 97544339 + 3'UTR SNP T C C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPYD 1806 broad.mit.edu 37 1 98186381 98186381 + Intron SNP C G G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPYD 1806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 97564120 97564120 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYD 1806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 98164907 98164907 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYS 1807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 105456595 105456595 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYS 1807 hgsc.bcm.edu;ucsc.edu 37 8 105440278 105440278 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYSL2 1808 broad.mit.edu 37 8 26515051 26515053 + 3'UTR DEL TTG - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPYSL2 1808 hgsc.bcm.edu 37 8 26505237 26505238 + Frame_Shift_Ins INS - - TA novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPYSL2 1808 hgsc.bcm.edu;ucsc.edu 37 8 26509869 26509869 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPYSL3 1809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 146792202 146792202 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYSL3 1809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 146798117 146798117 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYSL3 1809 hgsc.bcm.edu;ucsc.edu 37 5 146780285 146780285 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPYSL4 10570 broad.mit.edu 37 10 134018475 134018475 + 3'UTR SNP G A A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DPYSL4 10570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134012456 134012456 + Silent SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DPYSL4 10570 hgsc.bcm.edu 37 10 134013906 134013906 + Silent SNP C C T rs56326856 bycluster;byfrequency;by1000genomes TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPYSL4 10570 hgsc.bcm.edu;ucsc.edu 37 10 134013907 134013907 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DPYSL5 56896 broad.mit.edu 37 2 27170942 27170943 + 3'UTR DEL CA - - rs141571245 by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DQX1 165545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74745642 74745642 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DQX1 165545 broad.mit.edu;ucsc.edu 37 2 74746760 74746760 + Missense_Mutation SNP A C C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DRAM1 55332 broad.mit.edu 37 12 102271549 102271551 + 5'UTR DEL CGG - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DRAM1 55332 broad.mit.edu 37 12 102315190 102315190 + 3'UTR SNP G A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DRD1 1812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 174869226 174869226 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DRD2 1813 broad.mit.edu;hgsc.bcm.edu 37 11 113295088 113295088 + Splice_Site SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DRD3 1814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113858392 113858392 + Silent SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DRD3 1814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113858457 113858457 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DRD3 1814 hgsc.bcm.edu 37 3 113866367 113866367 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DRD3 1814 hgsc.bcm.edu 37 3 113890723 113890723 + Silent SNP G G T rs149122773 unknown;alternate_allele TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DRD5 1816 broad.mit.edu 37 4 9783962 9783962 + Silent SNP G T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DRD5 1816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 9784913 9784913 + Silent SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DRD5 1816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 9784959 9784959 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DRGX 644168 broad.mit.edu;ucsc.edu 37 10 50574424 50574424 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DRP2 1821 broad.mit.edu 37 X 100474959 100474961 + 5'UTR DEL GGA - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DRP2 1821 hgsc.bcm.edu 37 X 100497381 100497381 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DRP2 1821 hgsc.bcm.edu 37 X 100509876 100509876 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSC1 1823 broad.mit.edu 37 18 28720256 28720256 + Silent SNP G A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSC2 1824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28648279 28648279 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSC2 1824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28651750 28651750 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSC2 1824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28651758 28651758 + Silent SNP A A G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSC2 1824 hgsc.bcm.edu 37 18 28647999 28648000 + Frame_Shift_Ins INS - - TC novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSCAM 1826 broad.mit.edu 37 21 41384834 41384835 + 3'UTR INS - T T rs11451228 unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCAM 1826 broad.mit.edu 37 21 41384834 41384835 + 3'UTR INS - TT TT rs11451228 unknown;alternate_allele TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCAM 1826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 41385099 41385099 + Silent SNP G G A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAM 1826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 41450747 41450747 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAM 1826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 41741148 41741148 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAM 1826 hgsc.bcm.edu 37 21 41516473 41516474 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSCAM 1826 hgsc.bcm.edu;ucsc.edu 37 21 41414412 41414412 + Silent SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAM 1826 hgsc.bcm.edu;ucsc.edu 37 21 42007306 42007306 + Intron SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 broad.mit.edu 37 11 117299207 117299208 + Frame_Shift_Del DEL CT - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117309653 117309653 + Silent SNP C C A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117332278 117332278 + Silent SNP C C G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117352764 117352764 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117374716 117374716 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117374717 117374717 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117647629 117647629 + Silent SNP G G T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCAML1 57453 hgsc.bcm.edu 37 11 117299382 117299382 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSCAML1 57453 hgsc.bcm.edu 37 11 117351250 117351250 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSCAML1 57453 hgsc.bcm.edu 37 11 117387317 117387317 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSCC1 79075 broad.mit.edu;ucsc.edu 37 8 120865431 120865431 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCR10 259234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 39580489 39580489 + RNA SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCR3 10311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38610801 38610801 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCR4 10281 broad.mit.edu 37 21 39426752 39426752 + 3'UTR SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCR4 10281 broad.mit.edu 37 21 39426752 39426752 + 3'UTR SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCR6 53820 broad.mit.edu 37 21 38390280 38390280 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSCR6 53820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38385914 38385914 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSCR6 53820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38390298 38390298 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSE 29940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116752301 116752301 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSE 29940 hgsc.bcm.edu;ucsc.edu 37 6 116757866 116757866 + Silent SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSEL 92126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 65181609 65181609 + Silent SNP A A T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSEL 92126 broad.mit.edu;ucsc.edu 37 18 65180323 65180323 + Nonsense_Mutation SNP G C C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSG1 1828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28898303 28898303 + Missense_Mutation SNP A A G rs141269991 byfrequency;alternate_allele TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSG1 1828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28934518 28934518 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSG1 1828 broad.mit.edu;ucsc.edu 37 18 28908167 28908167 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSG1 1828 broad.mit.edu;ucsc.edu 37 18 28935225 28935225 + Silent SNP C T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSG2 1829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29102086 29102086 + Silent SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSG2 1829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29116293 29116293 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DSG2 1829 hgsc.bcm.edu;ucsc.edu 37 18 29101062 29101062 + Missense_Mutation SNP C C G novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSG3 1830 broad.mit.edu;ucsc.edu 37 18 29046612 29046612 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSG4 147409 broad.mit.edu 37 18 28991165 28991165 + Intron SNP G T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSG4 147409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28972163 28972163 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DSN1 79980 broad.mit.edu 37 20 35399610 35399610 + Intron SNP T C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSN1 79980 broad.mit.edu 37 20 35399863 35399864 + 5'UTR INS - GA GA novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSN1 79980 hgsc.bcm.edu 37 20 35387033 35387033 + Intron SNP T T C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSN1 79980 hgsc.bcm.edu 37 20 35395179 35395179 + Silent SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSN1 79980 hgsc.bcm.edu;ucsc.edu 37 20 35381212 35381212 + Silent SNP A A T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSP 1832 broad.mit.edu;hgsc.bcm.edu 37 6 7583787 7583787 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSP 1832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7583844 7583844 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DSP 1832 hgsc.bcm.edu 37 6 7559606 7559606 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DSPP 1834 broad.mit.edu 37 4 88536917 88536917 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSPP 1834 broad.mit.edu 37 4 88536917 88536917 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSPP 1834 broad.mit.edu 37 4 88536919 88536919 + Silent SNP T C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSPP 1834 broad.mit.edu 37 4 88536919 88536919 + Silent SNP T C C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSPP 1834 broad.mit.edu 37 4 88536919 88536919 + Silent SNP T C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSPP 1834 broad.mit.edu 37 4 88537258 88537258 + Silent SNP T C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DSPP 1834 hgsc.bcm.edu 37 4 88536934 88536934 + Silent SNP C C T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DST 667 broad.mit.edu 37 6 56394513 56394513 + Silent SNP G T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx DST 667 broad.mit.edu;hgsc.bcm.edu 37 6 56472759 56472759 + Intron SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56357198 56357198 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56357868 56357868 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56394387 56394387 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56394388 56394388 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56399926 56399926 + Silent SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56401585 56401585 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56417328 56417328 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56468870 56468870 + Intron SNP G G T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56469946 56469946 + Intron SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56471874 56471874 + Intron SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56481876 56481876 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56483775 56483775 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56484745 56484745 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56500387 56500387 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56501389 56501389 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56506875 56506875 + Missense_Mutation SNP C C T rs183335254 by1000genomes;alternate_allele TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56341042 56341042 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56418199 56418199 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56433296 56433296 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G G C G G Unknown Unknown Somatic Phase_I Capture 454 SOLID DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56470322 56470322 + Intron SNP C C G novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM SOLID DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56484970 56484971 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56495059 56495059 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID DSTYK 25778 hgsc.bcm.edu;ucsc.edu 37 1 205129247 205129247 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTHD1 401124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 36345346 36345346 + Missense_Mutation SNP G G A rs186265781 by1000genomes TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTHD1 401124 hgsc.bcm.edu;ucsc.edu 37 4 36285972 36285972 + Intron SNP G G T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DTNA 1837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32405233 32405233 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTNA 1837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32409025 32409025 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTNA 1837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32459638 32459638 + Missense_Mutation SNP G G T rs150410546 unknown;alternate_allele TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTNA 1837 hgsc.bcm.edu 37 18 32431802 32431802 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DTNB 1838 broad.mit.edu 37 2 25642241 25642241 + Intron SNP C A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DTNB 1838 broad.mit.edu;ucsc.edu 37 2 25754451 25754451 + Nonsense_Mutation SNP T A A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DTNB 1838 hgsc.bcm.edu;ucsc.edu 37 2 25754365 25754365 + Silent SNP T T C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DTNBP1 84062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 15615585 15615585 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTNBP1 84062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 15627643 15627643 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTWD1 56986 hgsc.bcm.edu;ucsc.edu 37 15 49917573 49917573 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DTWD2 285605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118280326 118280326 + Silent SNP A A G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTX1 1840 broad.mit.edu 37 12 113515329 113515329 + Silent SNP C A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DTX1 1840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113531851 113531851 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTX1 1840 hgsc.bcm.edu 37 12 113531890 113531890 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DTX2 113878 broad.mit.edu 37 7 76100473 76100473 + Intron DEL C - - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DTX2 113878 broad.mit.edu 37 7 76100474 76100474 + Intron DEL T - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DTX2 113878 hgsc.bcm.edu 37 7 76112183 76112183 + Silent SNP C C T rs144428371 byfrequency TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DTX3L 151636 broad.mit.edu 37 3 122290765 122290765 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DULLARD 0 broad.mit.edu 37 17 7147350 7147351 + 3'UTR INS - C C rs34926505 bycluster;by1000genomes TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DULLARD 0 broad.mit.edu 37 17 7147350 7147351 + 3'UTR INS - C C rs34926505 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DULLARD 0 broad.mit.edu 37 17 7147450 7147450 + 3'UTR SNP G T T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUOX1 53905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45428753 45428753 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOX1 53905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45434244 45434244 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOX1 53905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45453967 45453967 + Silent SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOX1 53905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45454451 45454451 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOX1 53905 broad.mit.edu;ucsc.edu 37 15 45453969 45453969 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUOX1 53905 hgsc.bcm.edu 37 15 45436386 45436386 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUOX1 53905 hgsc.bcm.edu 37 15 45436426 45436426 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUOX1 53905 hgsc.bcm.edu 37 15 45440634 45440634 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUOX2 50506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45398798 45398798 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOX2 50506 hgsc.bcm.edu 37 15 45387206 45387206 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUOX2 50506 hgsc.bcm.edu;ucsc.edu 37 15 45388135 45388135 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUOXA1 90527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45412823 45412823 + Missense_Mutation SNP C C A rs147223934 byfrequency;alternate_allele TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOXA1 90527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45412824 45412824 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOXA1 90527 hgsc.bcm.edu;ucsc.edu 37 15 45409941 45409941 + Frame_Shift_Del DEL C C - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUOXA1 90527 hgsc.bcm.edu;ucsc.edu 37 15 45412946 45412946 + Missense_Mutation SNP C C T rs75981505 byfrequency;by1000genomes;alternate_allele TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUOXA2 405753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45408398 45408398 + Silent SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUPD1 338599 broad.mit.edu 37 10 76797800 76797800 + Missense_Mutation SNP G A A rs148261941 by1000genomes TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUS2L 54920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68071947 68071947 + Silent SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUS2L 54920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68109279 68109279 + Silent SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUS2L 54920 hgsc.bcm.edu;ucsc.edu 37 16 68112666 68112666 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUS3L 56931 broad.mit.edu 37 19 5785681 5785681 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUSP10 11221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 221912420 221912420 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP1 1843 broad.mit.edu 37 5 172197509 172197509 + Intron SNP C G G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUSP11 8446 hgsc.bcm.edu 37 2 74001019 74001019 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP14 11072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35872566 35872566 + Silent SNP T T C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP15 128853 broad.mit.edu 37 20 30438442 30438442 + Missense_Mutation SNP T C C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUSP16 80824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 12629998 12629998 + Silent SNP A A T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP19 142679 broad.mit.edu 37 2 183960602 183960602 + 3'UTR DEL T - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUSP19 142679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183960371 183960371 + Silent SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP21 63904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44703517 44703517 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP22 56940 hgsc.bcm.edu 37 6 304671 304671 + Intron SNP T T A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP26 78986 broad.mit.edu;hgsc.bcm.edu 37 8 33449489 33449489 + 3'UTR SNP G G T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP26 78986 broad.mit.edu;ucsc.edu 37 8 33451243 33451243 + Missense_Mutation SNP C T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUSP27 92235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 167095901 167095901 + Silent SNP A A C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP27 92235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 167097025 167097025 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP27 92235 hgsc.bcm.edu;ucsc.edu 37 1 167096184 167096184 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP27 92235 hgsc.bcm.edu;ucsc.edu 37 1 167097707 167097707 + Silent SNP A A T rs138064659 by1000genomes;alternate_allele TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP3 1845 hgsc.bcm.edu;ucsc.edu 37 17 41847147 41847147 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP4 1846 hgsc.bcm.edu 37 8 29197736 29197736 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP5 1847 broad.mit.edu 37 10 112271145 112271146 + 3'UTR INS - T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DUSP5 1847 broad.mit.edu;hgsc.bcm.edu 37 10 112269965 112269965 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP5 1847 broad.mit.edu;hgsc.bcm.edu 37 10 112269966 112269966 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DUSP7 1849 hgsc.bcm.edu 37 3 52084903 52084903 + Silent SNP C C A rs149589220 unknown;alternate_allele TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP8 1850 hgsc.bcm.edu 37 11 1579466 1579466 + Silent SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP8 1850 hgsc.bcm.edu;ucsc.edu 37 11 1580186 1580186 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUSP9 1852 hgsc.bcm.edu;ucsc.edu 37 X 152915555 152915555 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DUT 1854 broad.mit.edu 37 15 48634453 48634455 + 3'UTR DEL CAC - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 CAC CAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DVL1 1855 broad.mit.edu 37 1 1275427 1275427 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYDC1 143241 hgsc.bcm.edu 37 10 82112339 82112339 + Nonsense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYDC1 143241 hgsc.bcm.edu;ucsc.edu 37 10 82112316 82112316 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYM 54808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 46906085 46906085 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYM 54808 hgsc.bcm.edu;ucsc.edu 37 18 46623772 46623772 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYNC1H1 1778 broad.mit.edu 37 14 102431128 102431132 + Frame_Shift_Del DEL CTGCG - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 CTGCG CTGCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC1H1 1778 broad.mit.edu 37 14 102489437 102489437 + Intron DEL A - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu 37 14 102466737 102466737 + Splice_Site SNP G G A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu 37 14 102489262 102489262 + Intron SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102446833 102446833 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102452696 102452696 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102510612 102510612 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102516411 102516411 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC1H1 1778 hgsc.bcm.edu;ucsc.edu 37 14 102505179 102505179 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYNC1H1 1778 hgsc.bcm.edu;ucsc.edu 37 14 102516872 102516872 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYNC1I2 1781 broad.mit.edu 37 2 172583232 172583232 + Intron SNP A C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC1I2 1781 broad.mit.edu 37 2 172604426 172604426 + 3'UTR SNP G C C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC1LI2 1783 broad.mit.edu 37 16 66757488 66757488 + 3'UTR DEL T - - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC1LI2 1783 broad.mit.edu 37 16 66757488 66757488 + 3'UTR DEL T - - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC1LI2 1783 hgsc.bcm.edu 37 16 66761652 66761653 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 broad.mit.edu 37 11 103093809 103093809 + Nonsense_Mutation SNP T G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103024178 103024178 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103057148 103057148 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103058111 103058111 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103091360 103091360 + Silent SNP C C A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103229065 103229065 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103349892 103349892 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2H1 79659 hgsc.bcm.edu 37 11 103025274 103025274 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYNC2H1 79659 hgsc.bcm.edu;ucsc.edu 37 11 102991435 102991435 + Silent SNP G G C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYNC2H1 79659 hgsc.bcm.edu;ucsc.edu 37 11 103229004 103229004 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYNC2LI1 51626 broad.mit.edu 37 2 44001213 44001213 + 5'UTR SNP C T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYNLT1 6993 hgsc.bcm.edu 37 6 159065758 159065758 + 5'UTR SNP C C G rs2306751 bycluster;by2hit2allele;by1000genomes TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK1A 1859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38845082 38845082 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK1A 1859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38862648 38862648 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK2 8445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 68052356 68052356 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK2 8445 hgsc.bcm.edu 37 12 68052359 68052359 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYRK3 8444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 206822222 206822222 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK3 8444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 206822277 206822277 + Silent SNP C C T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK4 8798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4702286 4702286 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYRK4 8798 hgsc.bcm.edu 37 12 4722815 4722815 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYSF 8291 broad.mit.edu 37 2 71801334 71801335 + In_Frame_Ins INS - AGGCGG AGGCGG novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYSF 8291 broad.mit.edu 37 2 71825715 71825715 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYSF 8291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71896302 71896302 + Silent SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYSF 8291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71909676 71909676 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DYSF 8291 broad.mit.edu;ucsc.edu 37 2 71738941 71738941 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DYSF 8291 hgsc.bcm.edu;ucsc.edu 37 2 71838425 71838425 + Silent SNP C C A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DYX1C1 161582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55722880 55722880 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DZIP1 22873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 96238362 96238362 + Silent SNP T T C rs181395665 by1000genomes TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DZIP1L 199221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 137813726 137813726 + Missense_Mutation SNP G G A rs148594666 bycluster;byfrequency;by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq DZIP1L 199221 broad.mit.edu;ucsc.edu 37 3 137813771 137813771 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx DZIP1L 199221 hgsc.bcm.edu;ucsc.edu 37 3 137787177 137787177 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID DZIP1L 199221 hgsc.bcm.edu;ucsc.edu 37 3 137787955 137787955 + Intron SNP G G C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID E2F1 1869 hgsc.bcm.edu 37 20 32267679 32267681 + In_Frame_Del DEL CGA CGA - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq E2F3 1871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 20481597 20481597 + Silent SNP C C A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq E2F5 1875 broad.mit.edu 37 8 86119690 86119690 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx E2F5 1875 hgsc.bcm.edu;ucsc.edu 37 8 86118418 86118418 + Silent SNP C C A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID E2F7 144455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 77444477 77444477 + Silent SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq E2F7 144455 broad.mit.edu;ucsc.edu 37 12 77424037 77424037 + Silent SNP G T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx E2F7 144455 hgsc.bcm.edu;ucsc.edu 37 12 77417897 77417897 + Silent SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID E2F7 144455 hgsc.bcm.edu;ucsc.edu 37 12 77426862 77426862 + Silent SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID E2F7 144455 hgsc.bcm.edu;ucsc.edu 37 12 77427723 77427723 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID E2F8 79733 broad.mit.edu 37 11 19246016 19246017 + 3'UTR INS - TG TG rs141034351 bycluster;by1000genomes;alternate_allele TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx E2F8 79733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19247052 19247052 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EAF2 55840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121591511 121591511 + Silent SNP C C A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EAF2 55840 hgsc.bcm.edu 37 3 121554183 121554183 + Silent SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EAF2 55840 hgsc.bcm.edu;ucsc.edu 37 3 121554180 121554181 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EAPP 55837 hgsc.bcm.edu;ucsc.edu 37 14 34985595 34985595 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBAG9 9166 broad.mit.edu;hgsc.bcm.edu 37 8 110576820 110576820 + 3'UTR SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBAG9 9166 broad.mit.edu;ucsc.edu 37 8 110567065 110567065 + Silent SNP G A A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EBF1 1879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158250251 158250251 + Silent SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBF2 64641 broad.mit.edu 37 8 25899690 25899690 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EBF2 64641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25744310 25744310 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBF2 64641 hgsc.bcm.edu 37 8 25708267 25708269 + In_Frame_Del DEL TGA TGA - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 TGA TGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBF2 64641 hgsc.bcm.edu;ucsc.edu 37 8 25744374 25744374 + Silent SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBF3 253738 broad.mit.edu 37 10 131760659 131760659 + Intron DEL T - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EBF3 253738 broad.mit.edu 37 10 131760659 131760659 + Intron DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EBF3 253738 broad.mit.edu 37 10 131761171 131761171 + Intron SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EBF3 253738 broad.mit.edu;hgsc.bcm.edu 37 10 131761928 131761928 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBF3 253738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 131638545 131638545 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBF3 253738 hgsc.bcm.edu 37 10 131671768 131671768 + Silent SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBF3 253738 hgsc.bcm.edu 37 10 131671768 131671768 + Silent SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBF3 253738 hgsc.bcm.edu 37 10 131671770 131671770 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBF3 253738 hgsc.bcm.edu 37 10 131671770 131671770 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBF4 57593 hgsc.bcm.edu 37 20 2730609 2730609 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBLN2 55096 hgsc.bcm.edu 37 3 73111481 73111481 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBLN2 55096 hgsc.bcm.edu 37 3 73111503 73111504 + In_Frame_Ins INS - - TGG novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBLN2 55096 hgsc.bcm.edu;ucsc.edu 37 3 73111546 73111546 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EBNA1BP2 10969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43637236 43637236 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBPL 84650 broad.mit.edu 37 13 50235160 50235160 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EBPL 84650 broad.mit.edu;hgsc.bcm.edu 37 13 50243946 50243946 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EBPL 84650 broad.mit.edu;hgsc.bcm.edu 37 13 50243947 50243947 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECD 11319 hgsc.bcm.edu 37 10 74914026 74914026 + Silent SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ECE1 1889 broad.mit.edu;hgsc.bcm.edu 37 1 21616586 21616586 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECE2 9718 broad.mit.edu 37 3 183976136 183976136 + Intron SNP T G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECE2 9718 broad.mit.edu 37 3 183976532 183976532 + Intron SNP T A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECE2 9718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184001749 184001749 + Silent SNP T T A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECEL1 9427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233349705 233349705 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECH1 1891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39321980 39321980 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECHDC1 55862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 127652111 127652111 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECHDC1 55862 hgsc.bcm.edu;ucsc.edu 37 6 127611269 127611269 + Silent SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ECHDC2 55268 broad.mit.edu 37 1 53377478 53377478 + Intron SNP G C C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECHDC2 55268 broad.mit.edu;hgsc.bcm.edu 37 1 53387308 53387308 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECHDC3 79746 broad.mit.edu;ucsc.edu 37 10 11797428 11797428 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECHDC3 79746 hgsc.bcm.edu;ucsc.edu 37 10 11805257 11805257 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECHS1 1892 broad.mit.edu;hgsc.bcm.edu 37 10 135184121 135184121 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECHS1 1892 hgsc.bcm.edu;ucsc.edu 37 10 135179506 135179506 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ECM1 1893 broad.mit.edu 37 1 150482321 150482321 + Intron SNP G C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECM1 1893 broad.mit.edu 37 1 150482765 150482769 + Intron DEL TAACC - - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 TAACC TAACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECM1 1893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150482475 150482475 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECM2 1842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95272275 95272275 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECM2 1842 hgsc.bcm.edu 37 9 95267851 95267851 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ECSCR 641700 broad.mit.edu 37 5 138784369 138784369 + 3'UTR SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ECSIT 51295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11618611 11618611 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECSIT 51295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11618640 11618640 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECSIT 51295 hgsc.bcm.edu 37 19 11618629 11618630 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECT2 1894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 172480526 172480526 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECT2 1894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 172502507 172502507 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECT2L 345930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 139206666 139206666 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ECT2L 345930 hgsc.bcm.edu;ucsc.edu 37 6 139222225 139222225 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDA 1896 broad.mit.edu;hgsc.bcm.edu 37 X 68836609 68836609 + Intron SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDA 1896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69255287 69255287 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDA 1896 hgsc.bcm.edu 37 X 68840746 68840746 + Intron SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDA 1896 hgsc.bcm.edu;ucsc.edu 37 X 69080650 69080650 + Intron SNP G G C novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDA 1896 hgsc.bcm.edu;ucsc.edu 37 X 69178440 69178440 + Intron SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDA 1896 hgsc.bcm.edu;ucsc.edu 37 X 69180128 69180128 + Intron SNP A A C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDAR 10913 broad.mit.edu 37 2 109512530 109512531 + 3'UTR DEL CA - - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDAR 10913 broad.mit.edu;hgsc.bcm.edu 37 2 109547486 109547486 + 5'UTR SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDAR 10913 hgsc.bcm.edu;ucsc.edu 37 2 109513432 109513432 + Silent SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDARADD 128178 broad.mit.edu 37 1 236647463 236647463 + 3'UTR DEL T - - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDC3 80153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 74925269 74925269 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDC4 23644 broad.mit.edu 37 16 67916780 67916780 + Intron SNP G A A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDC4 23644 broad.mit.edu 37 16 67917881 67917881 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDC4 23644 broad.mit.edu 37 16 67920202 67920202 + 3'UTR SNP G T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDC4 23644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67909957 67909957 + Silent SNP T T A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDC4 23644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67912713 67912713 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDDM3B 64184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21238699 21238699 + Silent SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDEM2 55741 broad.mit.edu 37 20 33703229 33703229 + 3'UTR SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDEM2 55741 broad.mit.edu;hgsc.bcm.edu 37 20 33703674 33703674 + Silent SNP A A C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDEM3 80267 hgsc.bcm.edu;ucsc.edu 37 1 184663341 184663341 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDIL3 10085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 83356228 83356228 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDIL3 10085 broad.mit.edu;ucsc.edu 37 5 83402565 83402565 + Nonsense_Mutation SNP C A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDIL3 10085 hgsc.bcm.edu 37 5 83402558 83402558 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDN1 1906 broad.mit.edu 37 6 12296593 12296594 + 3'UTR DEL GA - - rs142576582 by1000genomes TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDN1 1906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12292680 12292680 + Silent SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDN3 1908 broad.mit.edu 37 20 57899654 57899654 + Intron DEL C - - rs111992101 unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDN3 1908 broad.mit.edu 37 20 57899654 57899654 + Intron DEL C - - rs111992101 unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EDN3 1908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57876745 57876745 + Silent SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EDN3 1908 hgsc.bcm.edu 37 20 57896170 57896170 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDN3 1908 hgsc.bcm.edu;ucsc.edu 37 20 57897485 57897485 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDNRA 1909 hgsc.bcm.edu;ucsc.edu 37 4 148463689 148463689 + Silent SNP C C T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EDNRB 1910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 78472463 78472463 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEA1 8411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93171332 93171332 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEA1 8411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93202807 93202807 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEA1 8411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93210026 93210026 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEA1 8411 hgsc.bcm.edu 37 12 93192687 93192687 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EEA1 8411 hgsc.bcm.edu;ucsc.edu 37 12 93205170 93205170 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEF1A1 1915 broad.mit.edu 37 6 74228230 74228230 + Silent SNP G T T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EEF1A1 1915 broad.mit.edu;hgsc.bcm.edu 37 6 74227570 74227570 + Missense_Mutation SNP A A T rs11556678 unknown;alternate_allele TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEF1A1 1915 hgsc.bcm.edu;ucsc.edu 37 6 74228564 74228564 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EEF1A2 1917 broad.mit.edu;hgsc.bcm.edu 37 20 62129166 62129166 + 5'UTR SNP G G A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEF1A2 1917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62122020 62122020 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEF1D 1936 broad.mit.edu 37 8 144671911 144671911 + Intron SNP T A A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EEF1D 1936 broad.mit.edu 37 8 144671912 144671912 + Intron SNP C T T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EEF1D 1936 broad.mit.edu;hgsc.bcm.edu 37 8 144668953 144668953 + Silent SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEF1D 1936 hgsc.bcm.edu;ucsc.edu 37 8 144672056 144672056 + Missense_Mutation SNP G G A rs138749465 unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEF1G 1937 broad.mit.edu 37 11 62339115 62339115 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EEF1G 1937 hgsc.bcm.edu;ucsc.edu 37 11 62339298 62339298 + Intron SNP C C A novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EEFSEC 60678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 127983506 127983506 + Missense_Mutation SNP C C T rs142548867 byfrequency TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEFSEC 60678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128060617 128060617 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EEFSEC 60678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128060618 128060618 + Silent SNP G G T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB1 79645 hgsc.bcm.edu;ucsc.edu 37 8 49643118 49643118 + Silent SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EFCAB2 84288 broad.mit.edu 37 1 245250798 245250798 + Intron SNP T C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EFCAB2 84288 broad.mit.edu;hgsc.bcm.edu 37 1 245222709 245222709 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB3 146779 hgsc.bcm.edu;ucsc.edu 37 17 60484560 60484560 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EFCAB4B 84766 hgsc.bcm.edu 37 12 3806145 3806147 + In_Frame_Del DEL CCT CCT - rs67819433 unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 CCT CCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB5 374786 broad.mit.edu;hgsc.bcm.edu 37 17 28405489 28405489 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB5 374786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 28384816 28384816 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB5 374786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 28386632 28386632 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB6 64800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 44004465 44004465 + Missense_Mutation SNP C C A rs55698170 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFCAB6 64800 hgsc.bcm.edu;ucsc.edu 37 22 43950853 43950853 + Missense_Mutation SNP T T C rs34955597 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EFEMP2 30008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65635794 65635794 + Missense_Mutation SNP C C T rs113167523 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFEMP2 30008 hgsc.bcm.edu;ucsc.edu 37 11 65637667 65637667 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFHA1 221154 broad.mit.edu 37 13 22067484 22067484 + Silent SNP T C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EFHB 151651 hgsc.bcm.edu;ucsc.edu 37 3 19956903 19956903 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EFHC2 80258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44108155 44108155 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFHC2 80258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44132000 44132000 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EFHC2 80258 hgsc.bcm.edu;ucsc.edu 37 X 44091880 44091880 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID EFHD1 80303 hgsc.bcm.edu 37 2 233527579 233527579 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EFNA1 1942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155104091 155104091 + Silent SNP A A G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFNA3 1944 hgsc.bcm.edu 37 1 155057646 155057657 + In_Frame_Del DEL GGGGTGGGCCCC GGGGTGGGCCCC - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 GGGGTGGGCCCC GGGGTGGGCCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFNA4 1945 hgsc.bcm.edu;ucsc.edu 37 1 155039932 155039932 + Intron SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFR3A 23167 broad.mit.edu;hgsc.bcm.edu 37 8 132956999 132956999 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFR3B 22979 broad.mit.edu 37 2 25378837 25378837 + 3'UTR DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EFR3B 22979 hgsc.bcm.edu;ucsc.edu 37 2 25376657 25376657 + Intron SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFS 10278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23826852 23826852 + Silent SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFTUD1 79631 hgsc.bcm.edu 37 15 82444107 82444107 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EFTUD2 9343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42936450 42936450 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EFTUD2 9343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42953390 42953390 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGF 1950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 110862256 110862256 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGF 1950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 110897230 110897230 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGF 1950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 110909739 110909739 + Splice_Site SNP G G T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGF 1950 hgsc.bcm.edu 37 4 110865129 110865130 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGFL6 25975 broad.mit.edu;hgsc.bcm.edu 37 X 13636139 13636139 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGFL6 25975 hgsc.bcm.edu 37 X 13618146 13618146 + Silent SNP T T C novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGFL7 51162 broad.mit.edu 37 9 139563044 139563044 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EGFL8 80864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32134517 32134517 + Silent SNP G G A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGFLAM 133584 broad.mit.edu 37 5 38401416 38401416 + Intron DEL T - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EGFLAM 133584 broad.mit.edu 37 5 38402075 38402075 + Intron DEL C - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EGFLAM 133584 broad.mit.edu 37 5 38464857 38464857 + 3'UTR DEL T - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EGFLAM 133584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38427225 38427225 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGFLAM 133584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38427321 38427321 + Missense_Mutation SNP G G A rs144065923 bycluster;byfrequency;by1000genomes TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGFR 1956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 55249116 55249116 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGFR 1956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 55269438 55269438 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EGFR 1956 hgsc.bcm.edu 37 7 55223609 55223609 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGFR 1956 hgsc.bcm.edu 37 7 55259437 55259437 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGFR 1956 hgsc.bcm.edu 37 7 55259454 55259454 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGFR 1956 hgsc.bcm.edu 37 7 55259454 55259454 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGFR 1956 hgsc.bcm.edu 37 7 55259455 55259455 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGLN2 112398 hgsc.bcm.edu;ucsc.edu 37 19 41306619 41306619 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGR1 1958 broad.mit.edu;hgsc.bcm.edu 37 5 137802682 137802682 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EGR1 1958 hgsc.bcm.edu 37 5 137803671 137803671 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGR2 1959 hgsc.bcm.edu 37 10 64573811 64573811 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EGR3 1960 hgsc.bcm.edu 37 8 22550417 22550417 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EHBP1 23301 broad.mit.edu;hgsc.bcm.edu 37 2 62998585 62998585 + Intron SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHBP1 23301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63101527 63101527 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHBP1 23301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63169917 63169917 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHBP1 23301 broad.mit.edu;ucsc.edu 37 2 62934347 62934347 + Silent SNP A G G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EHBP1 23301 hgsc.bcm.edu;ucsc.edu 37 2 63175596 63175596 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EHBP1L1 254102 broad.mit.edu 37 11 65346872 65346872 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EHBP1L1 254102 broad.mit.edu;ucsc.edu 37 11 65348529 65348529 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EHBP1L1 254102 broad.mit.edu;ucsc.edu 37 11 65349886 65349886 + Silent SNP G A A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EHD1 10938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64645686 64645686 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHD1 10938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64645859 64645859 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHD2 30846 hgsc.bcm.edu 37 19 48239721 48239721 + Silent SNP C C A rs141588825 unknown;alternate_allele TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EHD3 30845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 31484438 31484438 + Silent SNP T T C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHD3 30845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 31484489 31484489 + Silent SNP G G A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHF 26298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 34670585 34670585 + Silent SNP G G C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHHADH 1962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184922240 184922240 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHHADH 1962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184947235 184947235 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHHADH 1962 hgsc.bcm.edu 37 3 184971754 184971755 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHMT1 79813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140671279 140671279 + Silent SNP C C T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHMT1 79813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140695437 140695437 + Splice_Site SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHMT2 10919 broad.mit.edu;hgsc.bcm.edu 37 6 31855386 31855386 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHMT2 10919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31848507 31848507 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EHMT2 10919 hgsc.bcm.edu 37 6 31851591 31851591 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EI24 9538 broad.mit.edu 37 11 125447653 125447655 + Intron DEL TGT - - rs141914290 by1000genomes TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 TGT TGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EID1 23741 broad.mit.edu 37 15 49170357 49170357 + 5'UTR SNP G C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EID1 23741 broad.mit.edu 37 15 49170496 49170496 + Silent SNP C A A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EID3 493861 hgsc.bcm.edu;ucsc.edu 37 12 104698324 104698325 + Frame_Shift_Ins INS - - T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF1 10209 broad.mit.edu 37 17 39845179 39845179 + 5'UTR SNP C T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF1 10209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39846142 39846142 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF1AD 84285 broad.mit.edu 37 11 65767901 65767901 + 5'UTR SNP C G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2A 83939 broad.mit.edu 37 3 150301775 150301775 + 3'UTR SNP A T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2A 83939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150264590 150264590 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2A 83939 broad.mit.edu;ucsc.edu 37 3 150264607 150264607 + Silent SNP G C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2AK1 27102 broad.mit.edu 37 7 6064007 6064008 + 3'UTR INS - AGA AGA rs10672014 bycluster TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2AK1 27102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6094303 6094303 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK1 27102 hgsc.bcm.edu 37 7 6068611 6068611 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2AK1 27102 hgsc.bcm.edu;ucsc.edu 37 7 6082561 6082561 + Intron SNP T T G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK2 5610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37347219 37347219 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK2 5610 broad.mit.edu;ucsc.edu 37 2 37366825 37366825 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2AK2 5610 hgsc.bcm.edu 37 2 37374007 37374007 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2AK2 5610 hgsc.bcm.edu;ucsc.edu 37 2 37368712 37368712 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK3 9451 hgsc.bcm.edu;ucsc.edu 37 2 88874521 88874521 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2AK3 9451 hgsc.bcm.edu;ucsc.edu 37 2 88892812 88892812 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2AK4 440275 broad.mit.edu 37 15 40266120 40266120 + Intron SNP C G G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2AK4 440275 broad.mit.edu;hgsc.bcm.edu 37 15 40268968 40268968 + Silent SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK4 440275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40299227 40299227 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK4 440275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40308848 40308848 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2AK4 440275 hgsc.bcm.edu;ucsc.edu 37 15 40299258 40299258 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2B1 1967 broad.mit.edu;hgsc.bcm.edu 37 12 124116921 124116921 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2B1 1967 broad.mit.edu;hgsc.bcm.edu 37 12 124116922 124116922 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2B2 8892 broad.mit.edu 37 14 75475938 75475938 + 3'UTR SNP A G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2B2 8892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75475794 75475794 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2B3 8891 hgsc.bcm.edu;ucsc.edu 37 1 45347334 45347334 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2B4 8890 broad.mit.edu 37 2 27590158 27590158 + Intron SNP C A A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2B4 8890 broad.mit.edu 37 2 27590158 27590158 + Intron SNP C A A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2B4 8890 broad.mit.edu 37 2 27591499 27591499 + Intron SNP A C C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2B5 8893 broad.mit.edu 37 3 183862873 183862873 + 3'UTR SNP T C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2B5 8893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183859715 183859715 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C1 26523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36372683 36372683 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C1 26523 hgsc.bcm.edu 37 1 36358772 36358772 + Silent SNP T T C novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2C1 26523 hgsc.bcm.edu 37 1 36358772 36358772 + Silent SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2C1 26523 hgsc.bcm.edu 37 1 36359912 36359912 + Splice_Region SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2C1 26523 hgsc.bcm.edu 37 1 36372708 36372708 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141545588 141545588 + Silent SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141549418 141549418 + Splice_Site SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141559213 141559213 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141559351 141559351 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141559352 141559352 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141566069 141566069 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C3 192669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36411321 36411321 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C3 192669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36499790 36499790 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C3 192669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36509078 36509078 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C3 192669 hgsc.bcm.edu 37 1 36474310 36474310 + Silent SNP T T A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF2C4 192670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36319144 36319144 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2C4 192670 hgsc.bcm.edu;ucsc.edu 37 1 36290935 36290935 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2S2 8894 broad.mit.edu 37 20 32699916 32699916 + Missense_Mutation SNP T A A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2S2 8894 broad.mit.edu 37 20 32699917 32699917 + 5'UTR SNP G T T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2S3 1968 broad.mit.edu 37 X 24095043 24095043 + 3'UTR DEL C - - novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF2S3 1968 hgsc.bcm.edu 37 X 24073090 24073091 + In_Frame_Ins INS - - GGG novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF2S3 1968 hgsc.bcm.edu;ucsc.edu 37 X 24086218 24086218 + Silent SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF3A 8661 broad.mit.edu;hgsc.bcm.edu 37 10 120801706 120801706 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3A 8661 broad.mit.edu;hgsc.bcm.edu 37 10 120801712 120801712 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3A 8661 broad.mit.edu;hgsc.bcm.edu 37 10 120832959 120832959 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3A 8661 hgsc.bcm.edu 37 10 120820287 120820287 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF3B 8662 broad.mit.edu;ucsc.edu 37 7 2404084 2404084 + Silent SNP A G G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3C 8663 hgsc.bcm.edu 37 16 28403353 28403355 + In_Frame_Del DEL TCC TCC - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3C 8663 hgsc.bcm.edu 37 16 28736317 28736317 + Silent SNP T T G rs15519 bycluster;byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF3CL 728689 hgsc.bcm.edu 37 16 28403353 28403355 + In_Frame_Del DEL TCC TCC - novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF3G 8666 broad.mit.edu 37 19 10229098 10229099 + Intron INS - G G rs34849604 unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3G 8666 hgsc.bcm.edu;ucsc.edu 37 19 10229837 10229837 + Silent SNP G G T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF3H 8667 broad.mit.edu 37 8 117657101 117657101 + 3'UTR SNP G A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3H 8667 broad.mit.edu 37 8 117657101 117657101 + 3'UTR SNP G A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3I 8668 broad.mit.edu 37 1 32696854 32696854 + 3'UTR SNP T G G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3J 8669 broad.mit.edu 37 15 44829349 44829350 + 5'UTR INS - CT CT novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3J 8669 broad.mit.edu 37 15 44829409 44829410 + In_Frame_Ins INS - ACT ACT novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3J 8669 broad.mit.edu 37 15 44853660 44853660 + 3'UTR DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF3K 27335 hgsc.bcm.edu;ucsc.edu 37 19 39116654 39116654 + Intron SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3L 51386 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38270461 38270461 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3L 51386 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38274117 38274117 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF3M 10480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32610272 32610272 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4A2 1974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186504360 186504360 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4A2 1974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186505363 186505363 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4A2 1974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186505633 186505633 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4A3 9775 broad.mit.edu 37 17 78120808 78120809 + Intron INS - TG TG novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF4A3 9775 hgsc.bcm.edu;ucsc.edu 37 17 78110034 78110034 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4B 1975 broad.mit.edu 37 12 53433572 53433572 + Intron SNP T C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF4E 1977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99823113 99823113 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4E1B 253314 hgsc.bcm.edu;ucsc.edu 37 5 176070710 176070710 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF4E2 9470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233431788 233431788 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4ENIF1 56478 broad.mit.edu 37 22 31846514 31846514 + Intron SNP T C C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF4ENIF1 56478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31850208 31850208 + Silent SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4ENIF1 56478 hgsc.bcm.edu;ucsc.edu 37 22 31851207 31851207 + Silent SNP A A T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF4G1 1981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184049133 184049133 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EIF4G1 1981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184049812 184049812 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EIF4G1 1981 hgsc.bcm.edu 37 3 184041029 184041029 + Silent SNP G G T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF4G2 1982 broad.mit.edu;hgsc.bcm.edu 37 11 10820873 10820873 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G2 1982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 10825853 10825853 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G2 1982 hgsc.bcm.edu 37 11 10825488 10825488 + Silent SNP A A C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF4G2 1982 hgsc.bcm.edu 37 11 10831340 10831340 + 5'Promoter SNP T T G rs79309089 unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF4G2 1982 hgsc.bcm.edu;ucsc.edu 37 11 10825559 10825559 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF4G3 8672 broad.mit.edu 37 1 21267791 21267791 + Intron DEL T - - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21133885 21133885 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21167484 21167484 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21186921 21186921 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21221941 21221941 + Silent SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21226401 21226401 + Silent SNP T T C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21268372 21268372 + Silent SNP C C T rs150884106 byfrequency;alternate_allele TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF4H 7458 hgsc.bcm.edu 37 7 73604047 73604047 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF5 1983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 103802419 103802419 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF5 1983 hgsc.bcm.edu 37 14 103803541 103803541 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF5 1983 hgsc.bcm.edu;ucsc.edu 37 14 103802189 103802189 + 5'UTR SNP T T C novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF5A 1984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7214802 7214802 + Splice_Site SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF5A 1984 hgsc.bcm.edu;ucsc.edu 37 17 7213099 7213099 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EIF5AL1 143244 broad.mit.edu 37 10 81272911 81272911 + 3'UTR SNP G A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EIF5B 9669 hgsc.bcm.edu;ucsc.edu 37 2 99977021 99977021 + Intron SNP C C A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EIF6 3692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33872048 33872048 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELAC1 55520 broad.mit.edu;ucsc.edu 37 18 48510776 48510776 + Silent SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELAC2 60528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 12920219 12920219 + Silent SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELAVL2 1993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 23705049 23705049 + Silent SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELAVL3 1995 broad.mit.edu 37 19 11565285 11565286 + 3'UTR DEL TC - - rs144868210 by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELAVL4 1996 hgsc.bcm.edu 37 1 50666792 50666792 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELAVL4 1996 hgsc.bcm.edu;ucsc.edu 37 1 50610784 50610784 + Silent SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELF1 1997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41507956 41507956 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELF1 1997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41515228 41515228 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELF1 1997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41525466 41525466 + Silent SNP T T A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELF1 1997 hgsc.bcm.edu 37 13 41517220 41517220 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELF2 1998 broad.mit.edu 37 4 139983329 139983329 + Intron DEL T - - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELF2 1998 broad.mit.edu 37 4 139983329 139983329 + Intron SNP T C C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELF2 1998 broad.mit.edu;hgsc.bcm.edu 37 4 139980658 139980658 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELF2 1998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 139983076 139983076 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELF3 1999 broad.mit.edu 37 1 201980096 201980096 + 5'UTR DEL T - - rs60246030 unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELFN1 392617 broad.mit.edu 37 7 1785687 1785688 + Frame_Shift_Del DEL GG - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELFN1 392617 broad.mit.edu 37 7 1786949 1786950 + 3'UTR INS - ACAG ACAG rs3077247 bycluster;by1000genomes TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELFN2 114794 broad.mit.edu 37 22 37770332 37770332 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELFN2 114794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37769171 37769171 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELFN2 114794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37770000 37770000 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELFN2 114794 hgsc.bcm.edu 37 22 37769178 37769178 + Silent SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELFN2 114794 hgsc.bcm.edu 37 22 37769914 37769914 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELK1 2002 broad.mit.edu 37 X 47498682 47498682 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELK3 2004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96640767 96640767 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELK3 2004 hgsc.bcm.edu 37 12 96641322 96641322 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELK4 2005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205592865 205592865 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELL2 22936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 95242241 95242241 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELL3 80237 hgsc.bcm.edu;ucsc.edu 37 15 44067734 44067734 + Silent SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELMO1 9844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 37262227 37262227 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELMO1 9844 hgsc.bcm.edu;ucsc.edu 37 7 37311449 37311449 + Silent SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELMO3 79767 broad.mit.edu;hgsc.bcm.edu 37 16 67235520 67235520 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELMO3 79767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67236114 67236114 + Silent SNP C C T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELMOD3 84173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85598666 85598666 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELN 2006 broad.mit.edu 37 7 73462860 73462860 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELN 2006 hgsc.bcm.edu 37 7 73462497 73462502 + In_Frame_Del DEL TGCAGC TGCAGC - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 TGCAGC TGCAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELN 2006 hgsc.bcm.edu 37 7 73471995 73471995 + Silent SNP T T C novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELN 2006 hgsc.bcm.edu;ucsc.edu 37 7 73452038 73452038 + Silent SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELOF1 84337 broad.mit.edu 37 19 11664531 11664531 + 3'UTR SNP G A A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELOVL1 64834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43829743 43829743 + Silent SNP C C T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELOVL2 54898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11005769 11005769 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELOVL4 6785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 80635976 80635976 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELOVL4 6785 hgsc.bcm.edu;ucsc.edu 37 6 80636042 80636043 + Frame_Shift_Ins INS - - TC novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELOVL5 60481 broad.mit.edu;hgsc.bcm.edu 37 6 53135376 53135376 + Intron SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELOVL5 60481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 53135507 53135507 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELOVL7 79993 hgsc.bcm.edu;ucsc.edu 37 5 60050500 60050500 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELP2 55250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33734957 33734957 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELP2 55250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33750159 33750159 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELP2 55250 hgsc.bcm.edu 37 18 33709981 33709981 + Nonsense_Mutation SNP A A T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELP3 55140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27970578 27970578 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELP4 26610 broad.mit.edu 37 11 31541630 31541630 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ELP4 26610 hgsc.bcm.edu 37 11 31541658 31541658 + Intron SNP T T A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELSPBP1 64100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48517560 48517560 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELSPBP1 64100 hgsc.bcm.edu;ucsc.edu 37 19 48523091 48523091 + Silent SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ELTD1 64123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 79387344 79387344 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ELTD1 64123 broad.mit.edu;ucsc.edu 37 1 79387470 79387470 + Missense_Mutation SNP A C C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMB 133418 broad.mit.edu 37 5 49707293 49707293 + Intron SNP A G G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMCN 51705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 101331487 101331487 + Silent SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMCN 51705 hgsc.bcm.edu 37 4 101368731 101368731 + Intron SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMD 2010 hgsc.bcm.edu 37 X 153609311 153609311 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EME1 146956 broad.mit.edu;hgsc.bcm.edu 37 17 48452557 48452557 + 5'UTR SNP A A C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq EME1 146956 broad.mit.edu;hgsc.bcm.edu 37 17 48452559 48452559 + 5'UTR SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq EME1 146956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48456585 48456585 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq EME1 146956 hgsc.bcm.edu;ucsc.edu 37 17 48456247 48456247 + Missense_Mutation SNP A A T rs186599955 by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM SOLID EME1 146956 hgsc.bcm.edu;ucsc.edu 37 17 48458125 48458125 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM SOLID EME2 197342 broad.mit.edu 37 16 1825568 1825568 + Splice_Site SNP A C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EME2 197342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1825398 1825398 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMG1 10436 hgsc.bcm.edu 37 12 7080210 7080211 + Frame_Shift_Ins INS - - G rs113953006 bycluster;by1000genomes TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMID2 136227 broad.mit.edu 37 7 101006350 101006350 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMID2 136227 broad.mit.edu;hgsc.bcm.edu 37 7 101063346 101063346 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMID2 136227 hgsc.bcm.edu 37 7 101063320 101063320 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN1 11117 broad.mit.edu;hgsc.bcm.edu 37 2 27305278 27305278 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN1 11117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27305157 27305157 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN1 11117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27306232 27306232 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN1 11117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27307380 27307380 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN1 11117 hgsc.bcm.edu;ucsc.edu 37 2 27308027 27308032 + Frame_Shift_Del DEL GGAGTG GGAGTG - novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 GGAGTG GGAGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN2 84034 broad.mit.edu;hgsc.bcm.edu 37 18 2891708 2891708 + Nonsense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN2 84034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2890714 2890714 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN2 84034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2891711 2891711 + Missense_Mutation SNP G G C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMILIN2 84034 hgsc.bcm.edu 37 18 2890860 2890860 + Silent SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EMILIN3 90187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39990048 39990048 + Silent SNP T T G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML1 2009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100375765 100375765 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML2 24139 broad.mit.edu 37 19 46144655 46144656 + 5'Flank INS - GACCT GACCT rs71338787 bycluster;by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EML2 24139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46119737 46119737 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML2 24139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46136177 46136177 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML2 24139 hgsc.bcm.edu;ucsc.edu 37 19 46136411 46136411 + Intron SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EML3 256364 broad.mit.edu 37 11 62373575 62373575 + Missense_Mutation SNP A C C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EML4 27436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 42472705 42472705 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML4 27436 hgsc.bcm.edu;ucsc.edu 37 2 42510110 42510110 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EML4 27436 hgsc.bcm.edu;ucsc.edu 37 2 42511760 42511760 + Intron SNP A A C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML5 161436 broad.mit.edu;hgsc.bcm.edu 37 14 89202708 89202708 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML5 161436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 89093186 89093186 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML5 161436 hgsc.bcm.edu 37 14 89168919 89168919 + Silent SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML5 161436 hgsc.bcm.edu 37 14 89202868 89202868 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EML5 161436 hgsc.bcm.edu;ucsc.edu 37 14 89128141 89128141 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EML5 161436 hgsc.bcm.edu;ucsc.edu 37 14 89168918 89168918 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EML6 400954 hgsc.bcm.edu 37 2 55177820 55177820 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EML6 400954 hgsc.bcm.edu 37 2 55177823 55177823 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EML6 400954 hgsc.bcm.edu;ucsc.edu 37 2 55195335 55195335 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMP2 2013 broad.mit.edu 37 16 10626598 10626598 + 3'UTR DEL T - - rs140499376 bycluster;by1000genomes TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMP2 2013 broad.mit.edu 37 16 10626598 10626598 + 3'UTR DEL T - - rs140499376 bycluster;by1000genomes TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMP2 2013 broad.mit.edu 37 16 10626630 10626630 + 3'UTR SNP T C C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMR1 2015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6896425 6896425 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR1 2015 hgsc.bcm.edu;ucsc.edu 37 19 6903923 6903923 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR2 30817 broad.mit.edu 37 19 14846897 14846897 + 3'UTR SNP T A A rs1859257 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EMR2 30817 hgsc.bcm.edu;ucsc.edu 37 19 14854320 14854320 + Missense_Mutation SNP C C A rs141428388 unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR2 30817 hgsc.bcm.edu;ucsc.edu 37 19 14877799 14877799 + Missense_Mutation SNP G G C rs74182236 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14736333 14736333 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14740973 14740973 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14749072 14749072 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14755050 14755050 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14758037 14758037 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR4P 326342 broad.mit.edu;hgsc.bcm.edu 37 19 6990855 6990855 + RNA SNP A A C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMR4P 326342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6984836 6984836 + RNA SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EMX1 2016 hgsc.bcm.edu 37 2 73161063 73161063 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EMX1 2016 hgsc.bcm.edu;ucsc.edu 37 2 73161028 73161028 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EN1 2019 broad.mit.edu 37 2 119604102 119604103 + Frame_Shift_Del DEL CG - - novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EN2 2020 broad.mit.edu 37 7 155257198 155257198 + 3'UTR DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENAH 55740 hgsc.bcm.edu 37 1 225707051 225707051 + Missense_Mutation SNP C C A rs140432837 byfrequency;alternate_allele TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENAM 10117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71495256 71495256 + Silent SNP T T G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENAM 10117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71510239 71510239 + Silent SNP C C A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENAM 10117 hgsc.bcm.edu;ucsc.edu 37 4 71500242 71500242 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENC1 8507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 73931537 73931537 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENC1 8507 hgsc.bcm.edu 37 5 73930904 73930904 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENDOD1 23052 hgsc.bcm.edu;ucsc.edu 37 11 94862593 94862593 + Silent SNP T T G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENGASE 64772 broad.mit.edu;hgsc.bcm.edu 37 17 77082460 77082460 + 3'UTR SNP G G T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENGASE 64772 hgsc.bcm.edu 37 17 77075667 77075667 + Silent SNP T T C rs3744183 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENHO 375704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34521629 34521629 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENO1 2023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 8926510 8926510 + Missense_Mutation SNP C C A rs11544509 unknown;alternate_allele TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENO1 2023 hgsc.bcm.edu 37 1 8925490 8925490 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENO2 2026 hgsc.bcm.edu 37 12 7031310 7031310 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENO3 2027 broad.mit.edu 37 17 4859135 4859135 + Intron SNP C T T rs1983153 unknown;alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENOSF1 55556 broad.mit.edu 37 18 674266 674266 + 3'UTR SNP T G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENOX1 55068 hgsc.bcm.edu;ucsc.edu 37 13 43934148 43934148 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENPEP 2028 broad.mit.edu 37 4 111397499 111397499 + 5'UTR SNP A C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENPEP 2028 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 111463966 111463966 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPEP 2028 broad.mit.edu;ucsc.edu 37 4 111409738 111409745 + Frame_Shift_Del DEL AATCTTTT - - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 AATCTTTT AATCTTTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENPEP 2028 hgsc.bcm.edu 37 4 111412268 111412268 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENPEP 2028 hgsc.bcm.edu;ucsc.edu 37 4 111412268 111412268 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENPP2 5168 broad.mit.edu;hgsc.bcm.edu 37 8 120651072 120651072 + 5'UTR SNP A A G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP2 5168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 120569905 120569905 + Silent SNP T T C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP2 5168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 120633703 120633703 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP3 5169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131971248 131971248 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP3 5169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131995388 131995388 + Silent SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP3 5169 hgsc.bcm.edu;ucsc.edu 37 6 132045256 132045256 + Intron SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP5 59084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46133254 46133254 + Silent SNP A A G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP6 133121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 185138820 185138820 + Silent SNP T T C rs148715663 unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENPP7 339221 broad.mit.edu 37 17 77707422 77707422 + Missense_Mutation SNP G A A rs145931726 unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENTHD1 150350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40231926 40231926 + Silent SNP G G A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTHD1 150350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40283658 40283658 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTHD1 150350 broad.mit.edu;ucsc.edu 37 22 40231918 40231918 + Missense_Mutation SNP A T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENTPD1 953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97607250 97607250 + Silent SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTPD2 954 broad.mit.edu 37 9 139944970 139944970 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENTPD3 956 broad.mit.edu;hgsc.bcm.edu 37 3 40433646 40433646 + Intron SNP G G C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTPD3 956 broad.mit.edu;hgsc.bcm.edu 37 3 40433669 40433669 + Intron SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTPD4 9583 broad.mit.edu 37 8 23291703 23291703 + Intron SNP C T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENTPD5 957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74454758 74454758 + Silent SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTPD6 955 hgsc.bcm.edu;ucsc.edu 37 20 25204723 25204723 + Intron SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ENTPD8 377841 broad.mit.edu 37 9 140331534 140331534 + Intron SNP A C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ENTPD8 377841 hgsc.bcm.edu 37 9 140330189 140330189 + Silent SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ENY2 56943 hgsc.bcm.edu;ucsc.edu 37 8 110355657 110355657 + Missense_Mutation SNP A A C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EOMES 8320 broad.mit.edu 37 3 27763289 27763289 + Frame_Shift_Del DEL T - - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EOMES 8320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27760303 27760303 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP300 2033 broad.mit.edu;hgsc.bcm.edu 37 22 41513594 41513594 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP300 2033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41566499 41566499 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EP300 2033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41572994 41572994 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP300 2033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41574358 41574358 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EP300 2033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41574794 41574794 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP300 2033 broad.mit.edu;ucsc.edu 37 22 41573737 41573737 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EP300 2033 hgsc.bcm.edu;ucsc.edu 37 22 41536219 41536219 + Silent SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID EP400 57634 broad.mit.edu 37 12 132445443 132445443 + Silent SNP A C C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EP400 57634 broad.mit.edu 37 12 132547093 132547093 + Silent SNP A G G rs28513925 unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EP400 57634 broad.mit.edu 37 12 132547138 132547138 + Silent SNP A G G rs111782215 bycluster;byfrequency TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EP400 57634 broad.mit.edu 37 12 132547141 132547141 + Silent SNP G A A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EP400 57634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 132491323 132491323 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP400 57634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 132497632 132497632 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP400 57634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 132511994 132511994 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EP400 57634 hgsc.bcm.edu 37 12 132471271 132471271 + Silent SNP C C A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EP400 57634 hgsc.bcm.edu 37 12 132505639 132505639 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EP400 57634 hgsc.bcm.edu 37 12 132512584 132512584 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EP400NL 347918 broad.mit.edu 37 12 132611059 132611059 + RNA SNP G C C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPAS1 2034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 46587819 46587819 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPAS1 2034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 46605874 46605874 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPAS1 2034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 46611722 46611723 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41 2035 hgsc.bcm.edu;ucsc.edu 37 1 29320587 29320587 + Intron SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L1 2036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34776292 34776292 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L1 2036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34778270 34778270 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L2 2037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131179363 131179363 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L2 2037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131190764 131190764 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L2 2037 hgsc.bcm.edu 37 6 131186756 131186756 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPB41L3 23136 broad.mit.edu;hgsc.bcm.edu 37 18 5396318 5396318 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L3 23136 broad.mit.edu;hgsc.bcm.edu 37 18 5410602 5410602 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L3 23136 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 5406847 5406847 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L3 23136 hgsc.bcm.edu;ucsc.edu 37 18 5428360 5428360 + Silent SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L4A 64097 broad.mit.edu 37 5 111600227 111600228 + Intron INS - A A rs10660118 unknown;alternate_allele TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPB41L4A-AS1 114915 hgsc.bcm.edu 37 5 111496629 111496629 + RNA SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPB41L4B 54566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111976002 111976002 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L4B 54566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111979310 111979310 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L4B 54566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 112005948 112005948 + Silent SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L4B 54566 hgsc.bcm.edu;ucsc.edu 37 9 112018509 112018509 + Intron SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L5 57669 hgsc.bcm.edu;ucsc.edu 37 2 120776734 120776734 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPB41L5 57669 hgsc.bcm.edu;ucsc.edu 37 2 120847955 120847966 + In_Frame_Del DEL ACTGGATCATCC ACTGGATCATCC - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 ACTGGATCATCC ACTGGATCATCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L5 57669 hgsc.bcm.edu;ucsc.edu 37 2 120850865 120850865 + Intron SNP T T G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB41L5(dist=3042) 0 hgsc.bcm.edu;ucsc.edu 37 2 120939739 120939739 + IGR SNP T T G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPB42 2038 hgsc.bcm.edu 37 15 43498732 43498732 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPB49 2039 hgsc.bcm.edu;ucsc.edu 37 8 21938618 21938618 + Intron SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPC1 80314 hgsc.bcm.edu;ucsc.edu 37 10 32582523 32582529 + Frame_Shift_Del DEL CTGACCA CTGACCA - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CTGACCA CTGACCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPC2 26122 hgsc.bcm.edu 37 2 149447846 149447846 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPC2 26122 hgsc.bcm.edu;ucsc.edu 37 2 149519487 149519487 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPC2 26122 hgsc.bcm.edu;ucsc.edu 37 2 149520266 149520266 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPC2 26122 hgsc.bcm.edu;ucsc.edu 37 2 149528431 149528431 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPDR1 54749 hgsc.bcm.edu 37 7 37960275 37960275 + Missense_Mutation SNP C C A rs62443108 by1000genomes TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHA10 284656 broad.mit.edu 37 1 38226758 38226758 + Intron DEL T - - rs140245143 bycluster;by1000genomes TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHA10 284656 broad.mit.edu 37 1 38227126 38227126 + Silent SNP G T T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx EPHA10 284656 broad.mit.edu;hgsc.bcm.edu 37 1 38192872 38192872 + Silent SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA10 284656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38186483 38186483 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA10 284656 hgsc.bcm.edu 37 1 38227130 38227136 + Frame_Shift_Del DEL ACAGGCA ACAGGCA - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 ACAGGCA ACAGGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA1 2041 broad.mit.edu;hgsc.bcm.edu 37 7 143095137 143095137 + Silent SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHA1 2041 broad.mit.edu;hgsc.bcm.edu 37 7 143097036 143097036 + Silent SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA1 2041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 143096499 143096499 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA1 2041 hgsc.bcm.edu 37 7 143094667 143094667 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHA1 2041 hgsc.bcm.edu;ucsc.edu 37 7 143090819 143090819 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHA2 1969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16458586 16458586 + Silent SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHA3 2042 hgsc.bcm.edu 37 3 89468539 89468539 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID EPHA3 2042 hgsc.bcm.edu;ucsc.edu 37 3 89468448 89468448 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA5 2044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 66197808 66197808 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA5 2044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 66213782 66213782 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA5 2044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 66467834 66467834 + Silent SNP C C G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA5 2044 hgsc.bcm.edu;ucsc.edu 37 4 66189869 66189869 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA6 285220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 96533798 96533798 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA6 285220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 97198177 97198177 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA7 2045 broad.mit.edu 37 6 94129154 94129154 + 5'UTR SNP T A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHA7 2045 broad.mit.edu;hgsc.bcm.edu 37 6 93969181 93969181 + Silent SNP G G C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHA7 2045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 93964470 93964470 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHA8 2046 broad.mit.edu 37 1 22913109 22913109 + Silent SNP G A A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHA8 2046 broad.mit.edu;hgsc.bcm.edu 37 1 22902833 22902833 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHA8 2046 broad.mit.edu;hgsc.bcm.edu 37 1 22920118 22920118 + Silent SNP C C G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHA8 2046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22895795 22895795 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA8 2046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22895796 22895796 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHA8 2046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22920016 22920016 + Splice_Site SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHA8 2046 hgsc.bcm.edu 37 1 22902954 22902954 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHA8 2046 hgsc.bcm.edu 37 1 22928117 22928117 + Intron SNP C C G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHB1 2047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 134967305 134967305 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHB2 2048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 23191446 23191446 + Silent SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHB2 2048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 23191471 23191471 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHB3 2049 hgsc.bcm.edu 37 3 184294703 184294703 + Silent SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHB4 2050 broad.mit.edu;hgsc.bcm.edu 37 7 100401094 100401094 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHB4 2050 broad.mit.edu;hgsc.bcm.edu 37 7 100417900 100417900 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHB4 2050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100411570 100411570 + Silent SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHB4 2050 hgsc.bcm.edu 37 7 100403283 100403284 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHB4 2050 hgsc.bcm.edu;ucsc.edu 37 7 100405125 100405125 + Silent SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHB6 2051 broad.mit.edu 37 7 142562259 142562259 + Frame_Shift_Del DEL C - - novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHB6 2051 broad.mit.edu 37 7 142565205 142565206 + Intron DEL GT - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHB6 2051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142563322 142563322 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHB6 2051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142563846 142563846 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHB6 2051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142568043 142568043 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EPHB6 2051 hgsc.bcm.edu 37 7 142562451 142562452 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHX1 2052 broad.mit.edu 37 1 226032308 226032308 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHX1 2052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226027665 226027665 + Silent SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHX1 2052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226032237 226032237 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHX1 2052 broad.mit.edu;ucsc.edu 37 1 226030115 226030115 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPHX1 2052 hgsc.bcm.edu 37 1 226027044 226027044 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPHX2 2053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27362496 27362496 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHX2 2053 hgsc.bcm.edu;ucsc.edu 37 8 27394388 27394388 + Intron SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPHX4 253152 hgsc.bcm.edu 37 1 92518079 92518079 + Silent SNP C C T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPM2A 7957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 145948647 145948647 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPM2AIP1 9852 hgsc.bcm.edu 37 3 37032775 37032775 + Silent SNP A A T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPN1 29924 broad.mit.edu 37 19 56204133 56204133 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPN2 22905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19186485 19186485 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPN2 22905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19186717 19186717 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPN2 22905 hgsc.bcm.edu 37 17 19232882 19232882 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPN3 55040 hgsc.bcm.edu;ucsc.edu 37 17 48618639 48618639 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPPK1 83481 broad.mit.edu 37 8 144940081 144940082 + Intron INS - A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPPK1 83481 broad.mit.edu 37 8 144942850 144942850 + Silent SNP G A A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPPK1 83481 broad.mit.edu;hgsc.bcm.edu 37 8 144941623 144941623 + Silent SNP C C A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144943012 144943012 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940462 144940462 + Silent SNP G G A rs56146920 bycluster TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940474 144940474 + Silent SNP C C T rs56015972 bycluster TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940506 144940506 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940540 144940540 + Silent SNP G G A rs56034452 bycluster TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940649 144940649 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940666 144940666 + Silent SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPPK1 83481 hgsc.bcm.edu 37 8 144940723 144940725 + In_Frame_Del DEL GGC GGC - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPRS 2058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220213565 220213565 + Silent SNP G G A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPRS 2058 hgsc.bcm.edu 37 1 220157566 220157566 + Silent SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPRS 2058 hgsc.bcm.edu 37 1 220174554 220174554 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPRS 2058 hgsc.bcm.edu;ucsc.edu 37 1 220153534 220153534 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPRS 2058 hgsc.bcm.edu;ucsc.edu 37 1 220154808 220154808 + Splice_Region SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPS15 2060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 51887534 51887534 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS15 2060 hgsc.bcm.edu 37 1 51869130 51869130 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS15L1 58513 broad.mit.edu 37 19 16472527 16472527 + 3'UTR SNP A T T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPS15L1 58513 broad.mit.edu 37 19 16512290 16512290 + Intron DEL G - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPS15L1 58513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16535940 16535940 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS15L1 58513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16536069 16536069 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS15L1 58513 hgsc.bcm.edu 37 19 16547765 16547765 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPS15L1 58513 hgsc.bcm.edu;ucsc.edu 37 19 16552710 16552710 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPS8 2059 broad.mit.edu 37 12 15803929 15803929 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPS8 2059 broad.mit.edu;hgsc.bcm.edu 37 12 15822749 15822749 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS8 2059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15803757 15803757 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS8 2059 hgsc.bcm.edu 37 12 15784537 15784539 + In_Frame_Del DEL GGA GGA - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS8L1 54869 broad.mit.edu 37 19 55599029 55599029 + 3'UTR DEL C - - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPS8L1 54869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55597327 55597327 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS8L2 64787 broad.mit.edu 37 11 722342 722342 + Intron DEL G - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPS8L2 64787 broad.mit.edu 37 11 726936 726936 + Missense_Mutation SNP G C C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EPS8L2 64787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 710481 710481 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPS8L2 64787 hgsc.bcm.edu;ucsc.edu 37 11 710455 710455 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPS8L3 79574 hgsc.bcm.edu;ucsc.edu 37 1 110295368 110295368 + Intron SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPS8L3 79574 hgsc.bcm.edu;ucsc.edu 37 1 110300154 110300154 + Silent SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPT1 85465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26587787 26587787 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPT1 85465 hgsc.bcm.edu;ucsc.edu 37 2 26587766 26587766 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EPX 8288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56277703 56277703 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EPYC 1833 broad.mit.edu;hgsc.bcm.edu 37 12 91366748 91366748 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERAL1 26284 broad.mit.edu;ucsc.edu 37 17 27182269 27182269 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERAL1 26284 hgsc.bcm.edu 37 17 27182058 27182059 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERAP1 51752 broad.mit.edu 37 5 96111927 96111928 + 3'UTR INS - AGCCCATTCATGAAAA AGCCCATTCATGAAAA novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERAP1 51752 broad.mit.edu 37 5 96111993 96111993 + 3'UTR DEL A - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERAP1 51752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96139528 96139528 + Silent SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERAP1 51752 hgsc.bcm.edu;ucsc.edu 37 5 96128933 96128933 + Intron SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERAP1 51752 hgsc.bcm.edu;ucsc.edu 37 5 96129410 96129410 + Intron SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERAP2 64167 broad.mit.edu 37 5 96253377 96253377 + 3'UTR SNP G T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERBB2 2064 broad.mit.edu 37 17 37883729 37883729 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERBB2 2064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37866350 37866350 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB2 2064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37873629 37873629 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB2 2064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37876087 37876087 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB2 2064 hgsc.bcm.edu 37 17 37876100 37876100 + Intron SNP C C A novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERBB2 2064 hgsc.bcm.edu;ucsc.edu 37 17 37871549 37871550 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB2IP 55914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 65350483 65350483 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB2IP 55914 broad.mit.edu;ucsc.edu 37 5 65288621 65288621 + Silent SNP T C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERBB2IP 55914 hgsc.bcm.edu 37 5 65321792 65321792 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERBB2IP 55914 hgsc.bcm.edu;ucsc.edu 37 5 65350608 65350608 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERBB3 2065 broad.mit.edu 37 12 56492212 56492212 + Intron SNP G A A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERBB3 2065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56487323 56487323 + Missense_Mutation SNP G G A rs149951770 unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB3 2065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56487573 56487573 + Silent SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB3 2065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56495609 56495609 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB3 2065 hgsc.bcm.edu;ucsc.edu 37 12 56477580 56477580 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERBB3 2065 hgsc.bcm.edu;ucsc.edu 37 12 56478808 56478808 + Silent SNP C C T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ERBB4 2066 broad.mit.edu 37 2 212243221 212243222 + 3'UTR DEL AA - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERBB4 2066 broad.mit.edu 37 2 212426491 212426491 + Intron SNP T A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212252692 212252692 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212426720 212426720 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212426721 212426721 + Silent SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212530141 212530141 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212576841 212576841 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212587123 212587123 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERBB4 2066 hgsc.bcm.edu;ucsc.edu 37 2 212530139 212530139 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID ERC1 23085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 1299182 1299182 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC1 2067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45923622 45923622 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC1 2067 hgsc.bcm.edu 37 19 45916986 45916986 + Silent SNP G G T rs3212976 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC1 2067 hgsc.bcm.edu 37 19 45917284 45917284 + Silent SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERCC2 2068 broad.mit.edu 37 19 45862051 45862051 + Intron SNP A T T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERCC2 2068 broad.mit.edu 37 19 45862052 45862052 + Intron SNP T G G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERCC2 2068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45857991 45857991 + Silent SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC2 2068 hgsc.bcm.edu 37 19 45872351 45872351 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERCC2 2068 hgsc.bcm.edu;ucsc.edu 37 19 45860816 45860816 + Intron SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERCC3 2071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128036918 128036918 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC4 2072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14041845 14041845 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC4 2072 hgsc.bcm.edu 37 16 14015889 14015889 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERCC4 2072 hgsc.bcm.edu;ucsc.edu 37 16 14041533 14041533 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERCC5 2073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103520522 103520522 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC5 2073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103528030 103528030 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC6 2074 broad.mit.edu;hgsc.bcm.edu 37 10 50696268 50696268 + Intron SNP A A G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC6 2074 broad.mit.edu;hgsc.bcm.edu 37 10 50696276 50696276 + Intron SNP A A T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC6 2074 broad.mit.edu;hgsc.bcm.edu 37 10 50732744 50732744 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC6 2074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50678573 50678573 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERCC6 2074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50690813 50690813 + Silent SNP A A G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERCC6 2074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50738880 50738880 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ERCC6 2074 hgsc.bcm.edu 37 10 50732231 50732231 + Silent SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC6 2074 hgsc.bcm.edu;ucsc.edu 37 10 50732227 50732227 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC6L 54821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71426172 71426172 + Silent SNP T T A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERCC8 1161 broad.mit.edu 37 5 60170366 60170366 + 3'UTR SNP T C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERCC8 1161 broad.mit.edu 37 5 60188547 60188547 + Intron SNP T G G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERCC8 1161 hgsc.bcm.edu;ucsc.edu 37 5 60183307 60183307 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERCC8 1161 hgsc.bcm.edu;ucsc.edu 37 5 60219014 60219014 + Intron SNP A A C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EREG 2069 broad.mit.edu 37 4 75246929 75246929 + Intron SNP G T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EREG(dist=5444) 0 hgsc.bcm.edu 37 4 75259921 75259921 + IGR SNP A A T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERF 2077 broad.mit.edu 37 19 42754274 42754274 + Intron SNP T C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERF 2077 broad.mit.edu;hgsc.bcm.edu 37 19 42753474 42753474 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERG 2078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 39870326 39870326 + 5'UTR SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERGIC1 57222 broad.mit.edu 37 5 172341926 172341926 + Intron SNP T A A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERGIC1 57222 hgsc.bcm.edu 37 5 172274560 172274560 + Intron SNP A A T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERGIC2 51290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 29509405 29509405 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERI1 90459 broad.mit.edu 37 8 8887690 8887690 + Intron SNP A G G novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERI1 90459 hgsc.bcm.edu 37 8 8887543 8887545 + In_Frame_Del DEL AAC AAC - rs140242735 bycluster;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERI2 112479 broad.mit.edu 37 16 20808364 20808364 + 3'UTR SNP G A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERI2 112479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20802204 20802204 + Silent SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERI2 112479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20810063 20810063 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERICH1 157697 broad.mit.edu 37 8 591104 591104 + Intron DEL G - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERICH1 157697 broad.mit.edu 37 8 591808 591808 + Intron DEL C - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERICH1 157697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 623372 623372 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERICH1 157697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 623548 623548 + Silent SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERICH1 157697 hgsc.bcm.edu 37 8 623641 623641 + Silent SNP A A G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERLEC1 27248 broad.mit.edu 37 2 54045137 54045137 + 3'UTR SNP C T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERLIN1 10613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101923759 101923759 + Splice_Site SNP A A G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERLIN2 11160 hgsc.bcm.edu;ucsc.edu 37 8 37611039 37611039 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERMN 57471 broad.mit.edu 37 2 158184074 158184074 + 5'Flank SNP C A A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERMN 57471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158182140 158182140 + Silent SNP C C T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERMN 57471 hgsc.bcm.edu;ucsc.edu 37 2 158178112 158178112 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERMP1 79956 broad.mit.edu 37 9 5785678 5785679 + 3'UTR INS - TACT TACT novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERMP1 79956 hgsc.bcm.edu;ucsc.edu 37 9 5801303 5801303 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERN1 2081 hgsc.bcm.edu 37 17 62142555 62142555 + Intron SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERN1 2081 hgsc.bcm.edu;ucsc.edu 37 17 62122827 62122827 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERN2 10595 broad.mit.edu 37 16 23702074 23702075 + 3'UTR INS - CTGGCGGTCTTTT CTGGCGGTCTTTT novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERN2 10595 broad.mit.edu 37 16 23702118 23702118 + 3'UTR SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERO1L 30001 broad.mit.edu 37 14 53110031 53110033 + 3'UTR DEL TCC - - rs144920494 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERO1L 30001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53118958 53118958 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERO1LB 56605 broad.mit.edu 37 1 236399492 236399492 + Intron SNP G C C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERO1LB 56605 hgsc.bcm.edu 37 1 236389662 236389662 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERP27 121506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15087884 15087884 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERP27 121506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15091412 15091412 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERP44 23071 broad.mit.edu 37 9 102861304 102861304 + 5'UTR SNP C G G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ERP44 23071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 102822388 102822388 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERVFRDE1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11104942 11104942 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERVFRDE1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11105212 11105212 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ERVFRDE1 0 hgsc.bcm.edu 37 6 11105465 11105465 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ERVFRDE1 0 hgsc.bcm.edu;ucsc.edu 37 6 11105373 11105373 + Silent SNP A A C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESAM 90952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124623594 124623594 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESCO1 114799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19119910 19119910 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESCO1 114799 hgsc.bcm.edu;ucsc.edu 37 18 19154328 19154329 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESCO2 157570 broad.mit.edu 37 8 27661087 27661087 + 3'UTR SNP A G G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESCO2 157570 hgsc.bcm.edu;ucsc.edu 37 8 27634237 27634237 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESD 2098 broad.mit.edu 37 13 47345484 47345484 + 3'UTR SNP G T T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESD 2098 broad.mit.edu 37 13 47351447 47351447 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESD 2098 broad.mit.edu;hgsc.bcm.edu 37 13 47345584 47345584 + Silent SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESF1 51575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 13695697 13695697 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESF1 51575 broad.mit.edu;ucsc.edu 37 20 13750637 13750637 + Silent SNP A G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESM1 11082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54277917 54277917 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESM1 11082 hgsc.bcm.edu;ucsc.edu 37 5 54277855 54277855 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESPL1 9700 broad.mit.edu 37 12 53670456 53670456 + Silent SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53662902 53662902 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53673565 53673565 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53682952 53682952 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53684167 53684167 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53685545 53685545 + Silent SNP C C G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53685569 53685569 + Silent SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53685805 53685805 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53686061 53686061 + Splice_Site SNP G G T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPL1 9700 hgsc.bcm.edu;ucsc.edu 37 12 53684665 53684665 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESPN 83715 broad.mit.edu;hgsc.bcm.edu 37 1 6504722 6504722 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESPNL 339768 hgsc.bcm.edu 37 2 239033943 239033943 + Silent SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESPNL 339768 hgsc.bcm.edu 37 2 239038912 239038912 + Silent SNP T T C rs57813708 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESPNP 284729 broad.mit.edu 37 1 17017734 17017734 + Missense_Mutation SNP C T T rs12561805 bycluster;byfrequency;byhapmap TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17023110 17023110 + Missense_Mutation SNP G A A rs11260887 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17023321 17023321 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17023403 17023403 + Silent SNP G A A rs10907267 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17023403 17023403 + Silent SNP G A A rs10907267 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17033858 17033858 + Silent SNP C T T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17034125 17034126 + Frame_Shift_Ins INS - AGCT AGCT novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17034125 17034126 + Frame_Shift_Ins INS - AGCT AGCT novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESPNP 284729 broad.mit.edu 37 1 17034423 17034423 + Silent SNP C T T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESR1 2099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152382174 152382174 + Silent SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESR2 2100 broad.mit.edu;hgsc.bcm.edu 37 14 64699828 64699828 + 3'UTR SNP T T G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESR2 2100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64746834 64746834 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESRP1 54845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95680227 95680227 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESRP2 80004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68264909 68264909 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESRRA 2101 broad.mit.edu;hgsc.bcm.edu 37 11 64082235 64082235 + Silent SNP G G A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESRRA 2101 hgsc.bcm.edu 37 11 64083296 64083298 + In_Frame_Del DEL GGG GGG - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GGG GGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESRRA 2101 hgsc.bcm.edu 37 11 64083296 64083298 + In_Frame_Del DEL GGG GGG - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 GGG GGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESRRB 2103 broad.mit.edu 37 14 76964809 76964809 + 3'UTR SNP G A A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ESYT1 23344 hgsc.bcm.edu 37 12 56524688 56524688 + Silent SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESYT1 23344 hgsc.bcm.edu;ucsc.edu 37 12 56524436 56524436 + Intron SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESYT1 23344 hgsc.bcm.edu;ucsc.edu 37 12 56531335 56531335 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESYT2 57488 hgsc.bcm.edu;ucsc.edu 37 7 158557475 158557475 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESYT2 57488 hgsc.bcm.edu 37 7 158529819 158529819 + Silent SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESYT2 57488 hgsc.bcm.edu;ucsc.edu 37 7 158590762 158590762 + Silent SNP T T G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ESYT3 83850 hgsc.bcm.edu;ucsc.edu 37 3 138170931 138170942 + Frame_Shift_Del DEL GGTAAGGCCGCT GGTAAGGCCGCT - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 GGTAAGGCCGCT GGTAAGGCCGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ESYT3 83850 hgsc.bcm.edu;ucsc.edu 37 3 138195267 138195267 + Intron SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETAA1 54465 hgsc.bcm.edu 37 2 67631831 67631831 + Missense_Mutation SNP G G A rs61740794 bycluster;byfrequency;by1000genomes TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ETAA1 54465 hgsc.bcm.edu;ucsc.edu 37 2 67637078 67637096 + Frame_Shift_Del DEL GAAATTCAGAGAAAAAGAC GAAATTCAGAGAAAAAGAC - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 GAAATTCAGAGAAAAAGAC GAAATTCAGAGAAAAAGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETF1 2107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137846859 137846862 + Frame_Shift_Del DEL GTGT GTGT - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 GTGT GTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETF1 2107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137848455 137848455 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETF1 2107 hgsc.bcm.edu 37 5 137853329 137853329 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ETFB 2109 broad.mit.edu;hgsc.bcm.edu 37 19 51857941 51857941 + 5'UTR SNP A A T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETFB 2109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51848472 51848472 + Missense_Mutation SNP C C T rs145173884 unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETFB 2109 broad.mit.edu;ucsc.edu 37 19 51857732 51857732 + Intron SNP G C C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ETFB 2109 hgsc.bcm.edu 37 19 51850290 51850290 + Missense_Mutation SNP G G A rs1130426 bycluster;byfrequency;by1000genomes TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ETFDH 2110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159627355 159627355 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETHE1 23474 broad.mit.edu 37 19 44010895 44010895 + 3'UTR SNP G C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ETHE1 23474 hgsc.bcm.edu 37 19 44030464 44030465 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETNK1 55500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22812052 22812052 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETNK1 55500 hgsc.bcm.edu 37 12 22778110 22778110 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETNK1 55500 hgsc.bcm.edu;ucsc.edu 37 12 22826447 22826447 + Silent SNP A A G novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ETV1 2115 broad.mit.edu 37 7 13935479 13935479 + 3'UTR SNP C G G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ETV1 2115 broad.mit.edu;ucsc.edu 37 7 13975450 13975450 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ETV3 2117 broad.mit.edu;hgsc.bcm.edu 37 1 157105442 157105442 + Silent SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ETV3L 440695 hgsc.bcm.edu 37 1 157062696 157062696 + Silent SNP G G T rs1176537 bycluster;byfrequency;by1000genomes TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ETV4 2118 broad.mit.edu 37 17 41610308 41610308 + Splice_Site SNP C T T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ETV4 2118 hgsc.bcm.edu;ucsc.edu 37 17 41613789 41613789 + Splice_Region SNP C C G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ETV6 2120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11905414 11905414 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVC 2121 broad.mit.edu;hgsc.bcm.edu 37 4 5733355 5733355 + Silent SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVC 2121 hgsc.bcm.edu 37 4 5755604 5755604 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EVC2 132884 hgsc.bcm.edu;ucsc.edu 37 4 5567008 5567008 + Silent SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EVI2B 2124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29632303 29632303 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVI5 7813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93089777 93089777 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVI5 7813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93163497 93163497 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVL 51466 hgsc.bcm.edu;ucsc.edu 37 14 100593123 100593123 + Intron SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVPL 2125 broad.mit.edu;hgsc.bcm.edu 37 17 74011147 74011147 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVPL 2125 broad.mit.edu;hgsc.bcm.edu 37 17 74018281 74018281 + Nonsense_Mutation SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVPL 2125 hgsc.bcm.edu 37 17 74003640 74003640 + Silent SNP C C T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EVPL 2125 hgsc.bcm.edu 37 17 74023229 74023229 + Silent SNP G G A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EVX1 2128 broad.mit.edu;ucsc.edu 37 7 27282680 27282680 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EVX1 2128 hgsc.bcm.edu 37 7 27285647 27285648 + In_Frame_Ins INS - - CCTGCC novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EVX2 344191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 176948341 176948341 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EWSR1 2130 broad.mit.edu 37 22 29686353 29686353 + Intron SNP T G G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EWSR1 2130 broad.mit.edu 37 22 29686700 29686700 + Intron DEL T - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EWSR1 2130 broad.mit.edu 37 22 29696195 29696195 + 3'UTR SNP T G G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EWSR1 2130 broad.mit.edu 37 22 29696337 29696337 + 3'UTR DEL T - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EWSR1 2130 broad.mit.edu;hgsc.bcm.edu 37 22 29686417 29686417 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EWSR1 2130 broad.mit.edu;ucsc.edu 37 22 29668371 29668371 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EWSR1 2130 hgsc.bcm.edu 37 22 29694787 29694787 + Silent SNP A A G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXD2 55218 hgsc.bcm.edu;ucsc.edu 37 14 69703302 69703302 + Intron SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXD3 54932 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140249170 140249170 + Nonsense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXO1 9156 hgsc.bcm.edu;ucsc.edu 37 1 242030291 242030291 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXOC1 55763 hgsc.bcm.edu 37 4 56738088 56738088 + Silent SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXOC2 55770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 532529 532529 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOC3L2 90332 hgsc.bcm.edu;ucsc.edu 37 19 45731306 45731306 + Silent SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXOC4 60412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 133689775 133689775 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOC4 60412 broad.mit.edu;ucsc.edu 37 7 133059626 133059626 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EXOC5 10640 hgsc.bcm.edu;ucsc.edu 37 14 57700758 57700758 + Intron SNP G G T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOC6 54536 hgsc.bcm.edu;ucsc.edu 37 10 94669364 94669364 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOC6B 23233 broad.mit.edu;hgsc.bcm.edu 37 2 72406461 72406461 + 3'UTR SNP C C G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOC6B 23233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72411218 72411218 + Silent SNP C C G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOC7 23265 broad.mit.edu 37 17 74093949 74093949 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EXOC7 23265 broad.mit.edu;hgsc.bcm.edu 37 17 74077512 74077512 + RNA SNP A A G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC10 5394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11128077 11128077 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC10 5394 hgsc.bcm.edu 37 1 11159823 11159823 + Silent SNP T T A rs12133922 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXOSC10 5394 hgsc.bcm.edu;ucsc.edu 37 1 11147603 11147603 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC10 5394 hgsc.bcm.edu;ucsc.edu 37 1 11155902 11155902 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC1 51013 broad.mit.edu 37 10 99196108 99196108 + 3'UTR SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EXOSC2 23404 hgsc.bcm.edu 37 9 133578519 133578519 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXOSC5 56915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41895707 41895707 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC8 11340 hgsc.bcm.edu;ucsc.edu 37 13 37580087 37580087 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXOSC9 5393 broad.mit.edu;hgsc.bcm.edu 37 4 122728760 122728760 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC9 5393 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 122722621 122722621 + Silent SNP A A G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXOSC9 5393 hgsc.bcm.edu;ucsc.edu 37 4 122731151 122731151 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108381263 108381263 + Silent SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108382192 108382192 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108382795 108382795 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108383516 108383516 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108389044 108389044 + Silent SNP G G T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXPH5 23086 hgsc.bcm.edu 37 11 108385374 108385374 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXPH5 23086 hgsc.bcm.edu;ucsc.edu 37 11 108384025 108384025 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXT1 2131 hgsc.bcm.edu;ucsc.edu 37 8 118819493 118819493 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXT2 2132 hgsc.bcm.edu 37 11 44130770 44130770 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EXTL1 2134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26355761 26355761 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXTL1 2134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26357724 26357724 + Silent SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXTL3 2137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28574199 28574199 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EXTL3 2137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28575522 28575522 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYA1 2138 broad.mit.edu 37 8 72234208 72234208 + Intron SNP A T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EYA2 2139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45702893 45702893 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYA2 2139 hgsc.bcm.edu;ucsc.edu 37 20 45771755 45771757 + In_Frame_Del DEL GCA GCA - novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 GCA GCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYA3 2140 hgsc.bcm.edu;ucsc.edu 37 1 28384560 28384560 + 5'UTR SNP T T C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EYA4 2070 broad.mit.edu 37 6 133756511 133756511 + Intron DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EYA4 2070 broad.mit.edu 37 6 133850247 133850247 + 3'UTR DEL C - - rs150541911 bycluster;by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx EYA4 2070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 133844277 133844277 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYA4 2070 hgsc.bcm.edu;ucsc.edu 37 6 133804175 133804175 + Silent SNP G G A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EYS 346007 broad.mit.edu;hgsc.bcm.edu 37 6 66112428 66112428 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYS 346007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 65655781 65655781 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYS 346007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 66063414 66063414 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYS 346007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 66205260 66205260 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYS 346007 hgsc.bcm.edu 37 6 64776299 64776299 + Silent SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EYS 346007 hgsc.bcm.edu;ucsc.edu 37 6 64436568 64436568 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq EYS 346007 hgsc.bcm.edu;ucsc.edu 37 6 64791859 64791859 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EYS 346007 hgsc.bcm.edu;ucsc.edu 37 6 66205285 66205285 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EZH1 2145 hgsc.bcm.edu;ucsc.edu 37 17 40854913 40854913 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EZH1 2145 hgsc.bcm.edu;ucsc.edu 37 17 40857163 40857163 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EZH2 2146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148544374 148544374 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq EZH2 2146 hgsc.bcm.edu 37 7 148504717 148504717 + 3'UTR SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EZH2 2146 hgsc.bcm.edu 37 7 148504717 148504717 + 3'UTR SNP G G A novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EZH2 2146 hgsc.bcm.edu 37 7 148512045 148512045 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID EZH2 2146 hgsc.bcm.edu;ucsc.edu 37 7 148506483 148506483 + Splice_Site SNP C C T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F11 2160 broad.mit.edu;hgsc.bcm.edu 37 4 187201213 187201213 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F11 2160 broad.mit.edu;hgsc.bcm.edu 37 4 187208887 187208887 + Silent SNP C C T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F11R 50848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160969694 160969694 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F12 2161 broad.mit.edu 37 5 176831178 176831178 + Intron DEL C - - rs139558059 bycluster;by1000genomes TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx F12 2161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176831333 176831333 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F12 2161 hgsc.bcm.edu 37 5 176832137 176832137 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F12 2161 hgsc.bcm.edu 37 5 176832389 176832389 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F13A1 2162 broad.mit.edu 37 6 6145726 6145726 + 3'UTR SNP A G G rs1050782 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx F13B 2165 broad.mit.edu 37 1 197008365 197008365 + 3'UTR SNP C T T rs698859 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx F13B 2165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197024881 197024881 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F13B 2165 broad.mit.edu;ucsc.edu 37 1 197029544 197029544 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx F13B 2165 hgsc.bcm.edu 37 1 197030048 197030048 + Silent SNP A A T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F2 2147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46747604 46747604 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F2 2147 hgsc.bcm.edu 37 11 46751085 46751085 + Missense_Mutation SNP G G T rs143064939 bycluster;byfrequency;by1000genomes TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F2 2147 hgsc.bcm.edu;ucsc.edu 37 11 46760838 46760838 + Nonsense_Mutation SNP T T G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F2R 2149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 76028881 76028881 + Silent SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F2RL1 2150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 76128711 76128711 + Silent SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F2RL1 2150 hgsc.bcm.edu 37 5 76129109 76129109 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F2RL2 2151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75914170 75914170 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F5 2153 broad.mit.edu;hgsc.bcm.edu 37 1 169510307 169510307 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F5 2153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169528479 169528479 + Silent SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F5 2153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169529926 169529926 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F5 2153 hgsc.bcm.edu 37 1 169510437 169510437 + Silent SNP T T C novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F5 2153 hgsc.bcm.edu 37 1 169510701 169510701 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F5 2153 hgsc.bcm.edu;ucsc.edu 37 1 169499051 169499051 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F7 2155 broad.mit.edu 37 13 113771240 113771240 + Intron DEL T - - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx F7 2155 hgsc.bcm.edu 37 13 113769996 113769996 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID F8 2157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154157680 154157680 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F8 2157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154194857 154194857 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F8 2157 broad.mit.edu;ucsc.edu 37 X 154129670 154129670 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx F9 2158 hgsc.bcm.edu 37 X 138619166 138619166 + Intron SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq F9 2158 hgsc.bcm.edu;ucsc.edu 37 X 138633386 138633386 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAAH2 158584 hgsc.bcm.edu 37 X 57313272 57313272 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAAH2 158584 hgsc.bcm.edu 37 X 57358084 57358084 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAAH2 158584 hgsc.bcm.edu;ucsc.edu 37 X 57337126 57337126 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAAH2 158584 hgsc.bcm.edu;ucsc.edu 37 X 57367784 57367784 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAAH 2166 hgsc.bcm.edu 37 1 46878796 46878796 + Silent SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAAH 2166 hgsc.bcm.edu 37 1 46878796 46878796 + Silent SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FABP1 2168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 88425757 88425757 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FABP1 2168 hgsc.bcm.edu 37 2 88427489 88427489 + Silent SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FABP2 2169 hgsc.bcm.edu;ucsc.edu 37 4 120240186 120240186 + 3'UTR SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FABP7 2173 broad.mit.edu 37 6 123105087 123105088 + 3'UTR INS - GAA GAA novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FABP7 2173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 123104854 123104854 + Intron SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FADD 8772 broad.mit.edu 37 11 70052630 70052630 + 3'UTR SNP T C C novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FADD 8772 broad.mit.edu 37 11 70052642 70052642 + 3'UTR SNP C T T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FADS2 9415 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61608124 61608124 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FADS2 9415 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61624985 61624985 + Missense_Mutation SNP G G A rs140356378 unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FADS3 3995 hgsc.bcm.edu;ucsc.edu 37 11 61643923 61643923 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FADS6 283985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72888762 72888762 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAF1 11124 broad.mit.edu 37 1 51425565 51425567 + Intron DEL CCG - - novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 CCG CCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAF1 11124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 50956260 50956260 + Silent SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAF1 11124 hgsc.bcm.edu;ucsc.edu 37 1 50941223 50941223 + Silent SNP G G A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAF2 23197 broad.mit.edu 37 5 175935961 175935961 + 3'UTR DEL T - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAH 2184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 80452758 80452758 + Silent SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAH 2184 hgsc.bcm.edu;ucsc.edu 37 15 80469938 80469938 + Intron SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAH 2184 hgsc.bcm.edu;ucsc.edu 37 15 80469941 80469941 + Intron SNP G G T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAHD2B 151313 broad.mit.edu 37 2 97749407 97749407 + 3'UTR SNP C T T rs79549240 unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAHD2B 151313 broad.mit.edu 37 2 97749417 97749417 + 3'UTR SNP C T T rs140620633 unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM2 23017 hgsc.bcm.edu 37 12 50284501 50284501 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAIM3 9214 broad.mit.edu 37 1 207077073 207077073 + 3'UTR DEL T - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM 55179 broad.mit.edu 37 3 138348071 138348071 + Intron SNP T G G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM 55179 broad.mit.edu 37 3 138348101 138348101 + Intron SNP T A A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM 55179 broad.mit.edu 37 3 138348258 138348259 + Intron INS - TAGCAAGTAAAATACC TAGCAAGTAAAATACC novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM 55179 broad.mit.edu 37 3 138348258 138348259 + Intron INS - TAGCAAGTAAAATACC TAGCAAGTAAAATACC novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM 55179 broad.mit.edu 37 3 138348258 138348259 + Intron INS - TAGCAAGTAAAATACC TAGCAAGTAAAATACC novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAIM 55179 broad.mit.edu 37 3 138348258 138348259 + Intron INS - TAGCAAGTAAAATACC TAGCAAGTAAAATACC novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM101A 144347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124798830 124798830 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM102A 399665 broad.mit.edu 37 9 130705357 130705357 + 3'UTR DEL G - - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM104A 84923 broad.mit.edu 37 17 71205829 71205829 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM104A 84923 broad.mit.edu;hgsc.bcm.edu 37 17 71204408 71204408 + 3'UTR SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM104B 90736 broad.mit.edu 37 X 55172431 55172431 + Intron SNP A T T rs5018686 byfrequency TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM104B 90736 broad.mit.edu 37 X 55172537 55172537 + Intron SNP G A A rs1047054 bycluster;byfrequency TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM104B 90736 hgsc.bcm.edu 37 X 55172606 55172606 + Splice_Region SNP G G A rs113745415 unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM105A 54491 broad.mit.edu 37 5 14610498 14610498 + 3'UTR SNP A G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM105A 54491 broad.mit.edu 37 5 14614796 14614797 + 3'UTR INS - CT CT novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM105A 54491 hgsc.bcm.edu 37 5 14602319 14602319 + Missense_Mutation SNP C C A rs144733724 unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM105A 54491 hgsc.bcm.edu 37 5 14602319 14602319 + Missense_Mutation SNP C C A rs144733724 unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM105A 54491 hgsc.bcm.edu;ucsc.edu 37 5 14601213 14601213 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM105A 54491 hgsc.bcm.edu;ucsc.edu 37 5 14608927 14608927 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM105B 90268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14693052 14693052 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM105B 90268 hgsc.bcm.edu;ucsc.edu 37 5 14673798 14673798 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM107B 83641 broad.mit.edu 37 10 14561157 14561158 + 3'UTR INS - T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM108A1 81926 broad.mit.edu 37 19 1881411 1881411 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM108C1 58489 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81046666 81046666 + Silent SNP A A G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM108C1 58489 hgsc.bcm.edu;ucsc.edu 37 15 81046580 81046580 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM109B 150368 hgsc.bcm.edu 37 22 42473544 42473544 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM10A4 0 broad.mit.edu 37 13 50746192 50746192 + 5'UTR SNP C T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM110B 90362 broad.mit.edu 37 8 59059205 59059205 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM110C 642273 broad.mit.edu 37 2 45667 45667 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM110C 642273 broad.mit.edu 37 2 46063 46063 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM111A 63901 broad.mit.edu 37 11 58921177 58921177 + 3'UTR DEL T - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM111A 63901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58920102 58920102 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM111B 374393 hgsc.bcm.edu 37 11 58892377 58892377 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM111B 374393 hgsc.bcm.edu;ucsc.edu 37 11 58877131 58877131 + Silent SNP A A C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM113A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2819279 2819279 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM113B 0 broad.mit.edu;hgsc.bcm.edu 37 12 47629733 47629733 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM113B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 47629507 47629507 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM113B 0 hgsc.bcm.edu 37 12 47630058 47630058 + Silent SNP T T A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM114A1 92689 broad.mit.edu 37 4 38945294 38945294 + 3'UTR SNP A T T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM114A1 92689 hgsc.bcm.edu;ucsc.edu 37 4 38924467 38924467 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM114A2 10827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153372626 153372626 + Silent SNP G G C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM114A2 10827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153390869 153390869 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM115C 285966 broad.mit.edu 37 7 143417404 143417405 + Frame_Shift_Del DEL CT - - novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM115C 285966 hgsc.bcm.edu 37 7 143400301 143400301 + Missense_Mutation SNP A G G rs80035595 unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM116A 0 broad.mit.edu 37 3 57678668 57678668 + Silent SNP G A A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM116A 0 broad.mit.edu 37 3 57678761 57678761 + 5'UTR SNP C A A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM116B 0 broad.mit.edu;hgsc.bcm.edu 37 22 50752245 50752245 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM116B 0 hgsc.bcm.edu 37 22 50751529 50751529 + Silent SNP G G C rs67248662 bycluster;by1000genomes TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM118A 55007 broad.mit.edu;hgsc.bcm.edu 37 22 45724290 45724290 + Intron SNP G G A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM118A 55007 broad.mit.edu;ucsc.edu 37 22 45726594 45726594 + Silent SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM118A 55007 broad.mit.edu;ucsc.edu 37 22 45726595 45726595 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM120A 23196 broad.mit.edu 37 9 96291967 96291967 + Intron SNP T A A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM120A 23196 broad.mit.edu 37 9 96320221 96320221 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM120A 23196 broad.mit.edu 37 9 96326385 96326385 + Intron DEL G - - novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM120A 23196 broad.mit.edu;hgsc.bcm.edu 37 9 96214409 96214409 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM120A 23196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96318810 96318810 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM120A 23196 hgsc.bcm.edu 37 9 96320124 96320124 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM120AOS 158293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96209937 96209937 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM120B 84498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 170627090 170627090 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM120C 54954 hgsc.bcm.edu;ucsc.edu 37 X 54142988 54142988 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM122A 116224 broad.mit.edu 37 9 71396052 71396052 + 3'UTR SNP T C C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM122C 159091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133941717 133941717 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123A 0 broad.mit.edu;hgsc.bcm.edu 37 13 25745612 25745612 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25743823 25743823 + Silent SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25744209 25744209 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25744223 25744223 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 63412535 63412535 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123B 0 hgsc.bcm.edu 37 X 63411177 63411177 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM123C 0 broad.mit.edu 37 2 131520998 131520998 + Silent SNP G A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM123C 0 broad.mit.edu 37 2 131522906 131522906 + 3'UTR DEL G - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM123C 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131520963 131520963 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM123C 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131521736 131521736 + Silent SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM124A 220108 broad.mit.edu 37 13 51825776 51825776 + Silent SNP G T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM124A 220108 broad.mit.edu 37 13 51855526 51855526 + 3'UTR DEL A - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM124A 220108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 51826047 51826047 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM125A 0 broad.mit.edu 37 19 17535839 17535839 + 3'UTR SNP A C C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM125A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17533164 17533164 + Missense_Mutation SNP C C T rs146357246 unknown;alternate_allele TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM125B 0 broad.mit.edu 37 9 129267958 129267959 + 3'UTR DEL TA - - rs71654764 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM126A 84668 hgsc.bcm.edu;ucsc.edu 37 7 23000857 23000858 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM126B 285172 broad.mit.edu 37 2 201841245 201841245 + 3'UTR DEL C - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM126B 285172 broad.mit.edu 37 2 201862090 201862090 + Intron SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM126B 285172 broad.mit.edu 37 2 201862153 201862153 + Intron SNP A G G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM129A 116496 broad.mit.edu 37 1 184764085 184764086 + 3'UTR INS - A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM129A 116496 broad.mit.edu;hgsc.bcm.edu 37 1 184777143 184777143 + Intron SNP G G T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM129A 116496 hgsc.bcm.edu 37 1 184764659 184764659 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM129A 116496 hgsc.bcm.edu 37 1 184859343 184859343 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM129A 116496 hgsc.bcm.edu;ucsc.edu 37 1 184859254 184859254 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM129B 64855 broad.mit.edu;hgsc.bcm.edu 37 9 130287413 130287413 + Silent SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM129B 64855 hgsc.bcm.edu;ucsc.edu 37 9 130294041 130294041 + Silent SNP G G A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM129C 199786 hgsc.bcm.edu 37 19 17662616 17662616 + Missense_Mutation SNP G G A rs76629753 bycluster;byfrequency;by1000genomes TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM129C 199786 hgsc.bcm.edu;ucsc.edu 37 19 17664214 17664214 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM131C 348487 broad.mit.edu 37 1 16361875 16361875 + Missense_Mutation SNP A G G rs79266383 unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM131C 348487 broad.mit.edu 37 1 16361916 16361916 + Silent SNP G A A rs80300125 unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM131C 348487 broad.mit.edu 37 1 16361919 16361919 + Silent SNP G A A rs148785270 by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM131C 348487 broad.mit.edu 37 1 16361925 16361925 + Silent SNP G A A rs75208590 unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM131C 348487 broad.mit.edu 37 1 16361925 16361925 + Silent SNP G A A rs75208590 unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM131C 348487 hgsc.bcm.edu 37 1 16386008 16386008 + Silent SNP T T C rs2863452 bycluster;byfrequency;by1000genomes TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM133A 286499 broad.mit.edu 37 X 92965209 92965210 + 3'UTR INS - T T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM134A 79137 hgsc.bcm.edu 37 2 220046449 220046449 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM134B 54463 broad.mit.edu 37 5 16474802 16474802 + 3'UTR SNP G T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM134B 54463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16475310 16475310 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135A 57579 broad.mit.edu 37 6 71266647 71266647 + Intron SNP G A A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM135A 57579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71185175 71185175 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135A 57579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71186969 71186969 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135A 57579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71234370 71234370 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135A 57579 hgsc.bcm.edu 37 6 71185160 71185160 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM135A 57579 hgsc.bcm.edu;ucsc.edu 37 6 71200728 71200728 + Intron SNP T T G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135A 57579 hgsc.bcm.edu;ucsc.edu 37 6 71235353 71235353 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM135B 51059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 139164359 139164359 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135B 51059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 139165076 139165076 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135B 51059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 139190851 139190851 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135B 51059 hgsc.bcm.edu 37 8 139165459 139165459 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM135B 51059 hgsc.bcm.edu;ucsc.edu 37 8 139180173 139180173 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM136A 84908 broad.mit.edu;hgsc.bcm.edu 37 2 70529085 70529085 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM136A 84908 hgsc.bcm.edu 37 2 70529055 70529055 + Splice_Site SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM136B 0 broad.mit.edu 37 6 3045892 3045892 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM13A 10144 hgsc.bcm.edu 37 4 89772247 89772248 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM13A 10144 hgsc.bcm.edu;ucsc.edu 37 4 89702427 89702427 + Silent SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM13A 10144 hgsc.bcm.edu;ucsc.edu 37 4 89912229 89912229 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM13B 51306 broad.mit.edu;ucsc.edu 37 5 137278882 137278882 + Silent SNP C T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM13B 51306 hgsc.bcm.edu;ucsc.edu 37 5 137347568 137347568 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM13C 220965 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61083812 61083812 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM150B 285016 broad.mit.edu 37 2 283140 283140 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM150B 285016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 283163 283163 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM151A 338094 broad.mit.edu;hgsc.bcm.edu 37 1 55089083 55089083 + 5'UTR SNP G G T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM151A 338094 broad.mit.edu;ucsc.edu 37 1 55077410 55077410 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM153A 285596 broad.mit.edu;hgsc.bcm.edu 37 5 177166139 177166139 + Splice_Site SNP C C A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM153A 285596 hgsc.bcm.edu 37 5 177161891 177161891 + Silent SNP A G G rs140979906 by1000genomes TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM153A 285596 hgsc.bcm.edu 37 5 177164044 177164044 + Missense_Mutation SNP G A A rs2006825 unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM153C 653316 hgsc.bcm.edu 37 5 177473898 177473899 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM154A 158297 broad.mit.edu 37 9 19032912 19032912 + 5'UTR SNP C T T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM155A 728215 broad.mit.edu 37 13 108440734 108440735 + Intron DEL TC - - rs113953506 bycluster;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM155A 728215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 108518168 108518168 + Silent SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM155A 728215 broad.mit.edu;ucsc.edu 37 13 108518837 108518837 + Missense_Mutation SNP C G G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM157A 728262 hgsc.bcm.edu 37 3 197894713 197894713 + Missense_Mutation SNP A A G rs61793576 unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM157B 100132403 broad.mit.edu 37 9 141107536 141107537 + In_Frame_Ins INS - GCA GCA rs3061423 unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM158A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24608257 24608257 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM160A1 729830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 152577469 152577469 + Silent SNP T T C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM160A1 729830 hgsc.bcm.edu;ucsc.edu 37 4 152577544 152577544 + Silent SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM160A2 84067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6233063 6233063 + Silent SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM160A2 84067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6233079 6233079 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM160A2 84067 hgsc.bcm.edu 37 11 6239139 6239139 + Silent SNP A A G rs11040809 bycluster;byfrequency;by1000genomes TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM160B1 57700 broad.mit.edu 37 10 116621368 116621368 + 3'UTR SNP A C C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM160B1 57700 broad.mit.edu 37 10 116621368 116621368 + 3'UTR SNP A C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM160B1 57700 broad.mit.edu 37 10 116621368 116621368 + 3'UTR SNP A C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM160B1 57700 hgsc.bcm.edu 37 10 116602698 116602698 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM160B2 64760 broad.mit.edu;hgsc.bcm.edu 37 8 21956566 21956566 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM160B2 64760 broad.mit.edu;ucsc.edu 37 8 21951993 21951994 + Frame_Shift_Del DEL TG - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM161B 145483 hgsc.bcm.edu 37 14 74411261 74411261 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM162A 26355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122123119 122123119 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM162B 221303 hgsc.bcm.edu;ucsc.edu 37 6 117083156 117083156 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM166A 401565 broad.mit.edu 37 9 140140165 140140165 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM166A 401565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140139762 140139762 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM166A 401565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140139965 140139965 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM166A 401565 hgsc.bcm.edu 37 9 140138088 140138088 + 3'UTR SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM166B 730112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35562911 35562911 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM166B 730112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35563218 35563218 + Silent SNP T T G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM166B 730112 broad.mit.edu;ucsc.edu 37 9 35563221 35563221 + Silent SNP A G G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM166B 730112 hgsc.bcm.edu;ucsc.edu 37 9 35563020 35563020 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM167B 84734 hgsc.bcm.edu 37 1 32713083 32713083 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM168A 23201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73130927 73130927 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM169A 26049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 74097435 74097435 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM169A 26049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 74097436 74097436 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM169A 26049 hgsc.bcm.edu 37 5 74091886 74091887 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM170A 340069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118969970 118969970 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM170A 340069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118970217 118970217 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM170B 170370 broad.mit.edu 37 10 50343924 50343924 + 5'Flank DEL C - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM171B 165215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 187615886 187615886 + Silent SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM171B 165215 hgsc.bcm.edu 37 2 187559047 187559048 + In_Frame_Ins INS - - CAA novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM171B 165215 hgsc.bcm.edu 37 2 187559050 187559050 + Silent SNP A A G rs75768569 unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM171B 165215 hgsc.bcm.edu 37 2 187559050 187559050 + Silent SNP A A G rs75768569 unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM172A 83989 hgsc.bcm.edu;ucsc.edu 37 5 92956819 92956819 + Silent SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM173B 134145 broad.mit.edu 37 5 10250009 10250009 + 5'UTR SNP T A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM173B 134145 broad.mit.edu;hgsc.bcm.edu 37 5 10227514 10227514 + 3'UTR SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM174B 400451 broad.mit.edu 37 15 93198679 93198684 + In_Frame_Del DEL TGGAGC - - rs68056278 bycluster;by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 TGGAGC TGGAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM174B 400451 broad.mit.edu 37 15 93198679 93198684 + In_Frame_Del DEL TGGAGC - - rs68056278 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 TGGAGC TGGAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM174B 400451 broad.mit.edu 37 15 93198679 93198684 + In_Frame_Del DEL TGGAGC - - rs68056278 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 TGGAGC TGGAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM175A 84142 broad.mit.edu 37 4 84390469 84390469 + Intron DEL G - - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM175A 84142 broad.mit.edu;hgsc.bcm.edu 37 4 84382418 84382418 + 3'UTR SNP A A G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM175B 23172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126523420 126523420 + Silent SNP T T C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM176A 0 hgsc.bcm.edu 37 2 75720569 75720577 + In_Frame_Del DEL GCTGTCGCT GCTGTCGCT - rs148155576 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GCTGTCGCT GCTGTCGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM178A 55719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102684302 102684302 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM178A 55719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102719193 102719193 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM178A 55719 hgsc.bcm.edu 37 10 102676494 102676494 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM178A 55719 hgsc.bcm.edu 37 10 102676847 102676847 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM178A 55719 hgsc.bcm.edu;ucsc.edu 37 10 102676845 102676845 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM178A 55719 hgsc.bcm.edu;ucsc.edu 37 10 102697179 102697179 + Silent SNP C C T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM179A 165186 broad.mit.edu;hgsc.bcm.edu 37 2 29268312 29268312 + Intron SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM179A 165186 broad.mit.edu;ucsc.edu 37 2 29221046 29221048 + In_Frame_Del DEL CAT - - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 CAT CAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM179A 165186 hgsc.bcm.edu;ucsc.edu 37 2 29256422 29256422 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM179B 23116 broad.mit.edu 37 14 45431527 45431527 + 5'UTR SNP C T T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45432114 45432114 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45433179 45433179 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45433557 45433557 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45468576 45468576 + Silent SNP G G A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45537687 45537687 + Silent SNP C C T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM179B 23116 hgsc.bcm.edu 37 14 45473301 45473301 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM179B 23116 hgsc.bcm.edu 37 14 45514043 45514043 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM179B 23116 hgsc.bcm.edu 37 14 45514044 45514044 + Silent SNP A A G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM179B 23116 hgsc.bcm.edu;ucsc.edu 37 14 45433129 45433129 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID FAM180A 389558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135433271 135433271 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM180A 389558 broad.mit.edu;ucsc.edu 37 7 135433272 135433272 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182A 284800 broad.mit.edu 37 20 26063625 26063625 + RNA SNP T C C rs77830989 bycluster TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182A 284800 broad.mit.edu 37 20 26063686 26063686 + RNA SNP C G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182A 284800 broad.mit.edu 37 20 26063752 26063752 + RNA SNP T C C rs78544920 bycluster TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182A 284800 broad.mit.edu 37 20 26063752 26063752 + RNA SNP T G G rs78544920 bycluster TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182A 284800 hgsc.bcm.edu 37 20 26049798 26049798 + 5'UTR SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM182A 284800 hgsc.bcm.edu 37 20 26049834 26049834 + 5'UTR SNP A A T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM182A 284800 hgsc.bcm.edu 37 20 26061960 26061960 + 5'UTR SNP T T C rs74714331 bycluster TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM182A 284800 hgsc.bcm.edu 37 20 26063578 26063578 + 5'UTR SNP A A G novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM182B 728882 broad.mit.edu 37 20 25848606 25848606 + RNA SNP G A A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182B 728882 broad.mit.edu 37 20 25848606 25848606 + RNA SNP G A A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM182B 728882 broad.mit.edu 37 20 25848629 25848629 + RNA SNP C T T rs2135567 bycluster TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM183A 440585 broad.mit.edu 37 1 43613612 43613612 + 5'UTR SNP A T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM183A 440585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43616487 43616487 + Silent SNP A A C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM184A 79632 hgsc.bcm.edu 37 6 119399382 119399382 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM185A 222234 hgsc.bcm.edu 37 7 102417753 102417753 + Missense_Mutation SNP T T G rs3789831 bycluster;byfrequency TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM186A 121006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50745374 50745374 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM186A 121006 broad.mit.edu;ucsc.edu 37 12 50748623 50748623 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM186A 121006 hgsc.bcm.edu 37 12 50745783 50745783 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM186A 121006 hgsc.bcm.edu 37 12 50745913 50745948 + In_Frame_Del DEL TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM186A 121006 hgsc.bcm.edu 37 12 50745913 50745948 + In_Frame_Del DEL TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM186A 121006 hgsc.bcm.edu 37 12 50746022 50746022 + Silent SNP C C G rs7304692 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM186A 121006 hgsc.bcm.edu 37 12 50746313 50746348 + In_Frame_Del DEL AGTGATCTCCTGAGCCTGTGCCTGCTGAGGGGTGAA AGTGATCTCCTGAGCCTGTGCCTGCTGAGGGGTGAA - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 AGTGATCTCCTGAGCCTGTGCCTGCTGAGGGGTGAA AGTGATCTCCTGAGCCTGTGCCTGCTGAGGGGTGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM187B 148109 broad.mit.edu 37 19 35716084 35716084 + Frame_Shift_Del DEL G - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM187B 148109 hgsc.bcm.edu 37 19 35719577 35719577 + Missense_Mutation SNP G G A rs34873156 bycluster;byfrequency;by1000genomes TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM188A 80013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 15879243 15879243 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM188A 80013 broad.mit.edu 37 10 15902340 15902340 + 5'UTR SNP G T T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM188A 80013 hgsc.bcm.edu 37 10 15902225 15902225 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM188A 80013 hgsc.bcm.edu;ucsc.edu 37 10 15880262 15880262 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM188B 84182 hgsc.bcm.edu;ucsc.edu 37 7 30893091 30893091 + Intron SNP T T C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM18A 0 broad.mit.edu 37 16 10861923 10861923 + 3'UTR SNP C A A rs2302710 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM18A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10864178 10864178 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM18A 0 hgsc.bcm.edu 37 16 10867214 10867214 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM18B2 0 broad.mit.edu 37 17 15406041 15406064 + 3'UTR DEL TCTCTTTCTCTCTCCTCTCTCCCG - - rs71150257 unknown;alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 TCTCTTTCTCTCTCCTCTCTCCCG TCTCTTTCTCTCTCCTCTCTCCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM18B2 0 broad.mit.edu;hgsc.bcm.edu 37 17 15449215 15449215 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM18B 0 hgsc.bcm.edu 37 17 18694277 18694277 + Missense_Mutation SNP G G A rs61075345 bycluster;by1000genomes TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM190A 0 hgsc.bcm.edu 37 4 91230368 91230368 + Silent SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM190B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 86130886 86130886 + Silent SNP A A T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM190B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 86130950 86130950 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM190B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 86132205 86132205 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM193A 8603 broad.mit.edu;hgsc.bcm.edu 37 4 2733610 2733610 + 3'UTR SNP G G C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM193A 8603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2674032 2674032 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM193A 8603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2733519 2733519 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM193A 8603 hgsc.bcm.edu 37 4 2664872 2664873 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM193B 54540 broad.mit.edu;hgsc.bcm.edu 37 5 176951610 176951610 + Silent SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194A 131831 broad.mit.edu;hgsc.bcm.edu 37 3 150421731 150421731 + 5'UTR SNP C C T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194A 131831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150384662 150384662 + Missense_Mutation SNP C C A rs150155678 unknown;alternate_allele TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194A 131831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150398270 150398270 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194A 131831 hgsc.bcm.edu 37 3 150421527 150421527 + Silent SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194A 131831 hgsc.bcm.edu 37 3 150421527 150421527 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194B 220081 hgsc.bcm.edu 37 13 46170720 46170737 + In_Frame_Del DEL CCAGATACTCTTCCTCCT CCAGATACTCTTCCTCCT - rs142875900 bycluster;by1000genomes TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 CCAGATACTCTTCCTCCT CCAGATACTCTTCCTCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194B 220081 hgsc.bcm.edu 37 13 46170720 46170737 + In_Frame_Del DEL CCAGATACTCTTCCTCCT CCAGATACTCTTCCTCCT - rs142875900 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CCAGATACTCTTCCTCCT CCAGATACTCTTCCTCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM194B 220081 hgsc.bcm.edu 37 13 46170733 46170734 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM194B 220081 hgsc.bcm.edu;ucsc.edu 37 13 46115659 46115659 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM195A 84331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 698116 698116 + Intron SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM196A 642938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 128974169 128974169 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM196A 642938 broad.mit.edu 37 10 128934616 128934617 + 3'UTR DEL TG - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM196B 100131897 broad.mit.edu 37 5 169290953 169290953 + 3'UTR DEL A - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM19A1 407738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 68466568 68466568 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM19A1 407738 hgsc.bcm.edu 37 3 68466561 68466561 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM19A2 338811 broad.mit.edu 37 12 62103959 62103959 + 3'UTR SNP A T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM19A2 338811 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 62147529 62147529 + Splice_Site SNP T T A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM19A2 338811 broad.mit.edu;ucsc.edu 37 12 62148719 62148719 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM19A4 151647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 68788346 68788346 + Silent SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM19A4 151647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 68802104 68802104 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM19A5 25817 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 49145683 49145683 + 3'UTR SNP C C T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM200A 221786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99144587 99144587 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM200A 221786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99144589 99144589 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM200A 221786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99145313 99145313 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM200A 221786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99145777 99145777 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM200A 221786 hgsc.bcm.edu 37 7 99145240 99145240 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM200A 221786 hgsc.bcm.edu;ucsc.edu 37 7 99144481 99144481 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM200B 285550 hgsc.bcm.edu;ucsc.edu 37 4 15688806 15688806 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM20B 9917 broad.mit.edu 37 1 179012867 179012867 + 5'UTR SNP T A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM20B 9917 broad.mit.edu 37 1 179012868 179012868 + 5'UTR SNP C A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM20B 9917 hgsc.bcm.edu;ucsc.edu 37 1 179013267 179013267 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM21A 387680 broad.mit.edu;hgsc.bcm.edu 37 10 51829431 51829431 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM21A 387680 hgsc.bcm.edu 37 10 51863872 51863872 + Missense_Mutation SNP T T C rs2490899 unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM21B 55747 hgsc.bcm.edu 37 10 47909179 47909181 + In_Frame_Del DEL ATA ATA - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 ATA ATA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM21C 253725 broad.mit.edu 37 10 46272804 46272804 + Silent SNP G A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM21C 253725 hgsc.bcm.edu 37 10 46254776 46254776 + Missense_Mutation SNP A A C rs2596979 bycluster;byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM22D 728130 broad.mit.edu 37 10 89117852 89117854 + 5'UTR DEL AGA - - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM22D 728130 broad.mit.edu 37 10 89117852 89117854 + 5'UTR DEL AGA - - novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM22F 54754 hgsc.bcm.edu 37 9 97080945 97080947 + In_Frame_Del DEL AGA AGA - rs150455117 bycluster;by1000genomes TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM22F 54754 hgsc.bcm.edu 37 9 97080945 97080947 + In_Frame_Del DEL AGA AGA - rs150455117 bycluster;by1000genomes TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM22F 54754 hgsc.bcm.edu 37 9 97080947 97080948 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM22F 54754 hgsc.bcm.edu 37 9 97080947 97080948 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM22F 54754 hgsc.bcm.edu 37 9 97081994 97081994 + Silent SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM22G 441457 broad.mit.edu;hgsc.bcm.edu 37 9 99700276 99700276 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM22G 441457 hgsc.bcm.edu 37 9 99691334 99691334 + Intron SNP G G T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM23B 0 hgsc.bcm.edu 37 10 18087630 18087631 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM27L 284123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 21826096 21826096 + RNA SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM35A 54537 broad.mit.edu;hgsc.bcm.edu 37 10 88930275 88930275 + Silent SNP G G C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM38A 0 broad.mit.edu 37 16 88787608 88787610 + In_Frame_Del DEL CTT - - rs150376294 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM38A 0 broad.mit.edu 37 16 88800396 88800398 + In_Frame_Del DEL CTG - - rs144777557 unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM38A 0 hgsc.bcm.edu 37 16 88787608 88787610 + In_Frame_Del DEL CTT CTT - rs150376294 bycluster;by1000genomes TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM38A 0 hgsc.bcm.edu 37 16 88787645 88787645 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM38A 0 hgsc.bcm.edu 37 16 88802748 88802748 + Silent SNP C C T rs61742623 bycluster;byfrequency;by1000genomes TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM38B 0 broad.mit.edu;hgsc.bcm.edu 37 18 10697808 10697808 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM3A 60343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153735234 153735234 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM3A 60343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153736831 153736831 + Silent SNP C C T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM3B 54097 broad.mit.edu 37 21 42717950 42717950 + Intron DEL A - - rs35090853 unknown;alternate_allele TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM3C 10447 broad.mit.edu;hgsc.bcm.edu 37 7 121023056 121023056 + 5'UTR SNP A A C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM3D 131177 broad.mit.edu 37 3 58619924 58619924 + 3'UTR SNP T G G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM3D 131177 hgsc.bcm.edu;ucsc.edu 37 3 58620032 58620032 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM40A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110582061 110582061 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM40A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110589317 110589317 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM40A 0 hgsc.bcm.edu;ucsc.edu 37 1 110581387 110581387 + Splice_Region SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM41C 284593 broad.mit.edu 37 1 809846 809846 + RNA SNP A G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM45A 404636 broad.mit.edu;hgsc.bcm.edu 37 10 120871395 120871395 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM45A 404636 broad.mit.edu;hgsc.bcm.edu 37 10 120877121 120877121 + Silent SNP C C A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM46A 55603 broad.mit.edu 37 6 82459345 82459345 + 3'UTR SNP C T T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM46A 55603 broad.mit.edu 37 6 82461713 82461713 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM46A 55603 hgsc.bcm.edu;ucsc.edu 37 6 82459989 82459989 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM46C 54855 broad.mit.edu 37 1 118166786 118166787 + 3'UTR INS - T T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM46C 54855 hgsc.bcm.edu;ucsc.edu 37 1 118166327 118166327 + Silent SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM46D 169966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 79698411 79698411 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM46D 169966 hgsc.bcm.edu;ucsc.edu 37 X 79698230 79698230 + Silent SNP T T C novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM47A 158724 broad.mit.edu 37 X 34148877 34148877 + Missense_Mutation SNP C G G rs5973088 byfrequency;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM47A 158724 broad.mit.edu 37 X 34148882 34148882 + Missense_Mutation SNP C T T rs5973089 byfrequency;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM47A 158724 hgsc.bcm.edu 37 X 34148257 34148257 + Silent SNP A A T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM47A 158724 hgsc.bcm.edu 37 X 34149658 34149693 + In_Frame_Del DEL ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM47A 158724 hgsc.bcm.edu 37 X 34149658 34149693 + In_Frame_Del DEL ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM47B 170062 broad.mit.edu 37 X 34961787 34961787 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM47B 170062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 34962088 34962088 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM47C 442444 broad.mit.edu;hgsc.bcm.edu 37 X 37028223 37028223 + Silent SNP C C A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM47C 442444 hgsc.bcm.edu 37 X 37027645 37027645 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM47C 442444 hgsc.bcm.edu 37 X 37027645 37027645 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM48A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37593524 37593524 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM48B1 0 hgsc.bcm.edu 37 X 24381736 24381736 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM48B1 0 hgsc.bcm.edu 37 X 24382644 24382644 + Silent SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM49A 81553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 16742257 16742257 + Splice_Site SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM50A 9130 hgsc.bcm.edu 37 X 153674014 153674014 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM50B 26240 broad.mit.edu 37 6 3850384 3850384 + Silent SNP C T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM50B 26240 broad.mit.edu;ucsc.edu 37 6 3850568 3850568 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM53A 152877 broad.mit.edu 37 4 1670531 1670531 + 5'UTR SNP G C C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM53B 9679 broad.mit.edu 37 10 126392779 126392780 + Intron DEL AG - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM54A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136562720 136562720 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM54A 0 hgsc.bcm.edu;ucsc.edu 37 6 136560875 136560875 + Nonsense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM54B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26152903 26152903 + Splice_Site SNP G G T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM54B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26153147 26153147 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM54B 0 hgsc.bcm.edu 37 1 26156098 26156098 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM55A 0 hgsc.bcm.edu;ucsc.edu 37 11 114401131 114401131 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM55B 0 broad.mit.edu;ucsc.edu 37 11 114568953 114568953 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM55B 0 broad.mit.edu;ucsc.edu 37 11 114569272 114569272 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM55B 0 broad.mit.edu;ucsc.edu 37 11 114569274 114569274 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM55C 0 broad.mit.edu 37 3 101520532 101520532 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM55C 0 hgsc.bcm.edu;ucsc.edu 37 3 101540501 101540501 + Silent SNP G G A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM55D 0 broad.mit.edu;hgsc.bcm.edu 37 11 114451052 114451052 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM55D 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 114442140 114442140 + Silent SNP C C A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM55D 0 hgsc.bcm.edu 37 11 114453112 114453112 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM57A 79850 hgsc.bcm.edu;ucsc.edu 37 17 641269 641269 + Silent SNP C C A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM57B 83723 broad.mit.edu 37 16 30036624 30036624 + Silent SNP G A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM58A 92002 broad.mit.edu;hgsc.bcm.edu 37 X 152860113 152860113 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM58B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200183197 200183197 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM59A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29847906 29847906 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM59A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29867421 29867421 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM59A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29867878 29867878 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM59A 0 hgsc.bcm.edu;ucsc.edu 37 18 29867671 29867671 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM59A 0 hgsc.bcm.edu;ucsc.edu 37 18 29868022 29868022 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM5B 57795 broad.mit.edu 37 1 177250855 177250856 + 3'UTR INS - AC AC rs113470314 bycluster;by1000genomes TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM5B 57795 broad.mit.edu 37 1 177250856 177250857 + 3'UTR DEL AC - - rs113470314 bycluster;by1000genomes TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177199237 177199237 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177249817 177249817 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177249921 177249921 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177250548 177250548 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5B 57795 hgsc.bcm.edu 37 1 177250096 177250097 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5B 57795 hgsc.bcm.edu;ucsc.edu 37 1 177249970 177249970 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190067353 190067353 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190067930 190067930 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190068174 190068174 + Silent SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190068181 190068181 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FAM63B 54629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59146745 59146745 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM63B 54629 hgsc.bcm.edu;ucsc.edu 37 15 59080171 59080171 + Intron SNP T T C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM64A 54478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6348680 6348680 + Missense_Mutation SNP G G A rs151147808 unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM64A 54478 hgsc.bcm.edu 37 17 6348463 6348464 + Frame_Shift_Del DEL CG CG - novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM65A 79567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67579292 67579292 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM65B 9750 hgsc.bcm.edu 37 6 24828489 24828489 + Silent SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM65B 9750 hgsc.bcm.edu 37 6 24828490 24828490 + Missense_Mutation SNP C C T rs9461073 bycluster;byfrequency;by1000genomes TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM65B 9750 hgsc.bcm.edu 37 6 24828490 24828490 + Missense_Mutation SNP C C T rs9461073 bycluster;byfrequency;by1000genomes TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM65B 9750 hgsc.bcm.edu;ucsc.edu 37 6 24843257 24843257 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM65B 9750 hgsc.bcm.edu;ucsc.edu 37 6 24843341 24843341 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM65C 140876 broad.mit.edu 37 20 49203006 49203009 + 3'UTR DEL TTGA - - rs145687289 bycluster;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 TTGA TTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM66D 100132923 broad.mit.edu 37 8 11985905 11985905 + Intron SNP C G G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM66D 100132923 broad.mit.edu 37 8 12216907 12216907 + Intron SNP T G G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM66D 100132923 broad.mit.edu 37 8 12217042 12217042 + Intron SNP G T T rs71518597 unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM66D 100132923 broad.mit.edu 37 8 12407297 12407297 + Intron DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM69A 388650 broad.mit.edu 37 1 93308909 93308909 + 3'UTR SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM69C 125704 hgsc.bcm.edu;ucsc.edu 37 18 72109246 72109246 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM69C 125704 hgsc.bcm.edu 37 18 72103854 72103854 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM70B 0 broad.mit.edu 37 13 114469190 114469190 + Missense_Mutation SNP C T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM70B 0 broad.mit.edu;hgsc.bcm.edu 37 13 114514719 114514719 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM70B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114469231 114469231 + Splice_Site SNP G G T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM70B 0 hgsc.bcm.edu 37 13 114503876 114503916 + Frame_Shift_Del DEL CCTGCGGGAGGTGAGGGGCACCGGGGACCCCCATATCTACA CCTGCGGGAGGTGAGGGGCACCGGGGACCCCCATATCTACA - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 CCTGCGGGAGGTGAGGGGCACCGGGGACCCCCATATCTACA CCTGCGGGAGGTGAGGGGCACCGGGGACCCCCATATCTACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71B 153745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156589916 156589916 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71B 153745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156592758 156592758 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71B 153745 broad.mit.edu;ucsc.edu 37 5 156592756 156592756 + Silent SNP G A A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM71C 196472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100042363 100042363 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71C 196472 broad.mit.edu;ucsc.edu 37 12 100042248 100042248 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM71D 161142 broad.mit.edu 37 14 67691958 67691958 + 3'UTR SNP G C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM71D 161142 hgsc.bcm.edu 37 14 67671485 67671485 + Silent SNP A A T rs55981040 bycluster;byfrequency TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM71E1 112703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50979507 50979507 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71E2 284418 broad.mit.edu;hgsc.bcm.edu 37 19 55873723 55873723 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71E2 284418 hgsc.bcm.edu 37 19 55870835 55870835 + Silent SNP A A C rs113307911 bycluster;byfrequency;by1000genomes TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM71F1 84691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128358917 128358917 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM71F2 346653 broad.mit.edu;ucsc.edu 37 7 128323136 128323136 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM72A 729533 hgsc.bcm.edu 37 1 206153974 206153974 + Missense_Mutation SNP T T C rs3196187 unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM73A 374986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78249000 78249000 + Silent SNP T T C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM73A 374986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78325069 78325069 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM73B 84895 broad.mit.edu 37 9 131832058 131832058 + Intron SNP C T T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM73B 84895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131804663 131804663 + Silent SNP C C T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM74A3 728495 broad.mit.edu 37 9 40715923 40715924 + RNA DEL AA - - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM75A3 0 hgsc.bcm.edu 37 9 40704227 40704227 + Silent SNP C T T rs67937937 bycluster TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM75A6 0 broad.mit.edu 37 9 43627074 43627074 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM75C1 0 broad.mit.edu 37 9 90534072 90534072 + Intron SNP A G G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM75C1 0 hgsc.bcm.edu 37 9 90537892 90537892 + Missense_Mutation SNP G G C rs512327 bycluster TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM75D1 0 broad.mit.edu;hgsc.bcm.edu 37 9 84607804 84607804 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM75D1 0 broad.mit.edu;hgsc.bcm.edu 37 9 84609412 84609412 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM75D1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 84605805 84605805 + Silent SNP C C A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM75D1 0 hgsc.bcm.edu;ucsc.edu 37 9 84608721 84608721 + Missense_Mutation SNP C C A rs12340292 bycluster;by2hit2allele;by1000genomes;alternate_allele TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM76A 199870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28060630 28060630 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM76A 199870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28081734 28081734 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM78A 286336 hgsc.bcm.edu 37 9 134136484 134136484 + Silent SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM78A 286336 hgsc.bcm.edu 37 9 134136486 134136486 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM78A 286336 hgsc.bcm.edu 37 9 134136486 134136486 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM78B 149297 hgsc.bcm.edu 37 1 166135390 166135390 + Silent SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM78B 149297 hgsc.bcm.edu 37 1 166135418 166135418 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM81B 153643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 94783997 94783997 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM82A1 0 hgsc.bcm.edu 37 2 38179040 38179040 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM82A2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41046894 41046894 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM82A2 0 hgsc.bcm.edu 37 15 41037298 41037298 + Silent SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM82B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87500826 87500826 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83A 84985 broad.mit.edu;hgsc.bcm.edu 37 8 124204198 124204198 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83A 84985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 124204063 124204063 + Silent SNP T T C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83A 84985 hgsc.bcm.edu 37 8 124195554 124195554 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54735119 54735119 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54791201 54791201 + Silent SNP T T C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54805594 54805594 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54806400 54806400 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54806759 54806759 + Missense_Mutation SNP G G A rs146473058 unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83B 222584 hgsc.bcm.edu 37 6 54804856 54804856 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM83B 222584 hgsc.bcm.edu;ucsc.edu 37 6 54791190 54791190 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM83C 128876 broad.mit.edu;hgsc.bcm.edu 37 20 33875579 33875579 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83C 128876 hgsc.bcm.edu;ucsc.edu 37 20 33875097 33875099 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83C 128876 hgsc.bcm.edu;ucsc.edu 37 20 33875700 33875700 + Silent SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM83D 81610 broad.mit.edu 37 20 37570842 37570842 + Intron SNP C G G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM83D 81610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37580732 37580732 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83G 644815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18907263 18907263 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83G 644815 hgsc.bcm.edu 37 17 18874924 18874925 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM83G 644815 hgsc.bcm.edu;ucsc.edu 37 17 18882881 18882881 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM83H 286077 broad.mit.edu 37 8 144810219 144810219 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86A 196483 hgsc.bcm.edu;ucsc.edu 37 16 5143526 5143526 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM86B1 85002 broad.mit.edu 37 8 12040786 12040786 + 3'UTR SNP C G G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86B1 85002 broad.mit.edu 37 8 12044016 12044016 + Missense_Mutation SNP T A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86B2 653333 broad.mit.edu 37 8 12285132 12285132 + Intron SNP C G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86B2 653333 broad.mit.edu 37 8 12285132 12285132 + Intron SNP C G G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86C 0 broad.mit.edu 37 11 71507232 71507232 + Intron SNP C G G rs7114001 bycluster TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86C 0 broad.mit.edu 37 11 71507261 71507261 + Intron SNP A G G rs111708284 by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86C 0 hgsc.bcm.edu 37 11 71504464 71504464 + Silent SNP C C T rs139287982 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM86D 0 broad.mit.edu 37 3 75472015 75472015 + 3'UTR SNP T G G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86D 0 broad.mit.edu 37 3 75475709 75475709 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86D 0 broad.mit.edu 37 3 75475719 75475719 + Silent SNP C G G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86D 0 broad.mit.edu 37 3 75476735 75476735 + Silent SNP C T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86D 0 broad.mit.edu 37 3 75476735 75476735 + Silent SNP C T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86D 0 broad.mit.edu 37 3 75476737 75476737 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM86D 0 broad.mit.edu 37 3 75480060 75480060 + 5'UTR SNP C A A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM90A1 55138 hgsc.bcm.edu 37 12 8374781 8374782 + In_Frame_Ins INS - - ACG rs71265055 bycluster;by1000genomes TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM90A1 55138 hgsc.bcm.edu 37 12 8374782 8374783 + In_Frame_Ins INS - - CGG novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM91A1 157769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 124817571 124817571 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM91A1 157769 hgsc.bcm.edu;ucsc.edu 37 8 124792237 124792237 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM91A1 157769 hgsc.bcm.edu;ucsc.edu 37 8 124799957 124799957 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM91A1 157769 hgsc.bcm.edu;ucsc.edu 37 8 124820573 124820573 + Silent SNP C C T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM92A1 137392 broad.mit.edu 37 8 94713911 94713912 + Intron INS - C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM92A3 0 broad.mit.edu 37 4 183959522 183959522 + RNA DEL A - - rs3039659 unknown;alternate_allele TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM92A3 0 broad.mit.edu 37 4 183959968 183959968 + RNA SNP T G G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM92A3 0 broad.mit.edu 37 4 183960484 183960484 + RNA DEL A - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM92A3 0 broad.mit.edu 37 4 183960484 183960484 + RNA DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM92A3 0 broad.mit.edu 37 4 183960484 183960484 + RNA DEL A - - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAM92B 339145 hgsc.bcm.edu;ucsc.edu 37 16 85135890 85135890 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM96A 84191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 64380992 64380992 + Silent SNP C C A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM96B 51647 broad.mit.edu;hgsc.bcm.edu 37 16 66966160 66966160 + Silent SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM98A 25940 hgsc.bcm.edu;ucsc.edu 37 2 33809869 33809869 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAM98C 147965 hgsc.bcm.edu 37 19 38893874 38893874 + Intron SNP G G T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM9A 171482 broad.mit.edu;hgsc.bcm.edu 37 X 8763259 8763259 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM9A 171482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 8764374 8764374 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAM9C 171484 broad.mit.edu 37 X 13055631 13055631 + Intron SNP T A A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCA 2175 broad.mit.edu 37 16 89865333 89865333 + Intron SNP G A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCA 2175 broad.mit.edu 37 16 89877420 89877420 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCA 2175 broad.mit.edu;hgsc.bcm.edu 37 16 89804179 89804179 + 3'UTR SNP C C T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCA 2175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89838183 89838183 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCA 2175 broad.mit.edu;ucsc.edu 37 16 89836339 89836339 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCA 2175 hgsc.bcm.edu;ucsc.edu 37 16 89807257 89807257 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FANCB 2187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 14882777 14882777 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCD2 2177 broad.mit.edu 37 3 10081677 10081677 + Intron DEL A - - rs112744109 unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCD2 2177 broad.mit.edu 37 3 10083177 10083177 + Intron SNP A C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCD2 2177 broad.mit.edu 37 3 10143086 10143087 + 3'UTR INS - A A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCD2 2177 hgsc.bcm.edu 37 3 10088404 10088404 + Silent SNP C C T rs141958850 byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCD2 2177 hgsc.bcm.edu 37 3 10108913 10108913 + Missense_Mutation SNP G G T rs80258959 bycluster;byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCD2 2177 hgsc.bcm.edu;ucsc.edu 37 3 10108913 10108913 + Missense_Mutation SNP G G T rs80258959 bycluster;byfrequency TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCE 2178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35423912 35423912 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCE 2178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35426171 35426171 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCF 2188 broad.mit.edu 37 11 22646152 22646152 + 3'UTR SNP A G G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCF 2188 broad.mit.edu 37 11 22647097 22647097 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCF 2188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22646829 22646829 + Silent SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCF 2188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22646844 22646844 + Silent SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCF 2188 broad.mit.edu;ucsc.edu 37 11 22646676 22646676 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCG 2189 broad.mit.edu;hgsc.bcm.edu 37 9 35075002 35075002 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCG 2189 broad.mit.edu;hgsc.bcm.edu 37 9 35075004 35075004 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCG 2189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35078167 35078167 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCI 55215 broad.mit.edu 37 15 89825246 89825246 + Intron SNP C T T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FANCI 55215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89837084 89837084 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCI 55215 hgsc.bcm.edu 37 15 89837146 89837146 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FANCI 55215 hgsc.bcm.edu;ucsc.edu 37 15 89859678 89859678 + Silent SNP A A G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCI 55215 hgsc.bcm.edu;ucsc.edu 37 15 89860072 89860072 + 3'UTR SNP C C T rs3087375 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FANCM 57697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45639810 45639810 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FANCM 57697 hgsc.bcm.edu 37 14 45606357 45606357 + Silent SNP T T C novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FANCM 57697 hgsc.bcm.edu 37 14 45658098 45658098 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FANK1 92565 broad.mit.edu 37 10 127683771 127683771 + Intron SNP C G G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAP 2191 broad.mit.edu 37 2 163099945 163099945 + 5'UTR SNP G C C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAR1 84188 hgsc.bcm.edu;ucsc.edu 37 11 13734516 13734516 + Silent SNP A A T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAR2 55711 hgsc.bcm.edu;ucsc.edu 37 12 29469894 29469894 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FARP1 10160 broad.mit.edu 37 13 99083408 99083408 + Missense_Mutation SNP G T T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FARP1 10160 broad.mit.edu 37 13 99092447 99092447 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FARP1 10160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 99098408 99098408 + Silent SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FARP1 10160 broad.mit.edu;ucsc.edu 37 13 99083480 99083480 + Nonsense_Mutation SNP G T T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FARP1 10160 hgsc.bcm.edu;ucsc.edu 37 13 98896767 98896767 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FARP2 9855 hgsc.bcm.edu 37 2 242429386 242429386 + Missense_Mutation SNP A A G rs150907406 unknown;alternate_allele TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FARP2 9855 hgsc.bcm.edu;ucsc.edu 37 2 242380935 242380935 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FARS2 10667 broad.mit.edu 37 6 5261686 5261687 + Intron INS - T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FARSA 2193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 13041068 13041068 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAS 355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90762874 90762874 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASLG 356 hgsc.bcm.edu 37 1 172635130 172635130 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FASLG 356 hgsc.bcm.edu 37 1 172635132 172635132 + Silent SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FASN 2194 broad.mit.edu;hgsc.bcm.edu 37 17 80041659 80041659 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASN 2194 broad.mit.edu;hgsc.bcm.edu 37 17 80046746 80046746 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASN 2194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80039936 80039936 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASN 2194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80041257 80041257 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASTK 10922 broad.mit.edu 37 7 150774944 150774944 + Intron SNP G T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FASTK 10922 hgsc.bcm.edu 37 7 150773915 150773915 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FASTKD1 79675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170411720 170411720 + Silent SNP T T C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASTKD1 79675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170416921 170416921 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASTKD2 22868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207639092 207639092 + Silent SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASTKD3 79072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 7867988 7867988 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FASTKD5 60493 hgsc.bcm.edu;ucsc.edu 37 20 3129208 3129208 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT1 2195 broad.mit.edu 37 4 187521052 187521052 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT1 2195 broad.mit.edu;hgsc.bcm.edu 37 4 187535488 187535488 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT1 2195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 187538911 187538911 + Silent SNP C C A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT1 2195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 187549319 187549319 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT1 2195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 187549904 187549904 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT1 2195 broad.mit.edu;ucsc.edu 37 4 187549318 187549318 + Silent SNP C T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT1 2195 broad.mit.edu;ucsc.edu 37 4 187629281 187629281 + Silent SNP A C C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT1 2195 hgsc.bcm.edu 37 4 187630234 187630234 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT1 2195 hgsc.bcm.edu;ucsc.edu 37 4 187539377 187539377 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT1 2195 hgsc.bcm.edu;ucsc.edu 37 4 187549412 187549412 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150901058 150901058 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150905349 150905349 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150925180 150925180 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150945790 150945790 + Silent SNP T T C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150948075 150948075 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150948482 150948482 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT2 2196 hgsc.bcm.edu 37 5 150924102 150924102 + Silent SNP G G T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT2 2196 hgsc.bcm.edu;ucsc.edu 37 5 150897291 150897291 + Silent SNP G G T novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT3 120114 broad.mit.edu 37 11 92616485 92616485 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT3 120114 broad.mit.edu 37 11 92616488 92616488 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92087535 92087535 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92088147 92088147 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92531032 92531032 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92531125 92531125 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92533045 92533045 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92534186 92534186 + Silent SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92543049 92543049 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92577387 92577387 + Silent SNP G G T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92590423 92590423 + Silent SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 broad.mit.edu;ucsc.edu 37 11 92532099 92532099 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT3 120114 hgsc.bcm.edu 37 11 92531420 92531421 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 hgsc.bcm.edu 37 11 92600266 92600266 + Silent SNP G G A rs75649640 bycluster;byfrequency;by1000genomes TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT3 120114 hgsc.bcm.edu 37 11 92600266 92600266 + Silent SNP G G A rs75649640 bycluster;byfrequency;by1000genomes TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT3 120114 hgsc.bcm.edu;ucsc.edu 37 11 92257814 92257814 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT3 120114 hgsc.bcm.edu;ucsc.edu 37 11 92531377 92531377 + Missense_Mutation SNP G G A rs150673105 by1000genomes TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 broad.mit.edu 37 4 126238838 126238838 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAT4 79633 broad.mit.edu;hgsc.bcm.edu 37 4 126398472 126398472 + Silent SNP A A G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126242662 126242662 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126328192 126328192 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126389800 126389800 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126389801 126389801 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126411497 126411497 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAT4 79633 hgsc.bcm.edu 37 4 126241253 126241253 + Silent SNP G G C rs7657251 bycluster;byfrequency;by1000genomes TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT4 79633 hgsc.bcm.edu 37 4 126336940 126336940 + Silent SNP A A C rs192467233 by1000genomes;alternate_allele TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT4 79633 hgsc.bcm.edu 37 4 126400930 126400930 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAT4 79633 hgsc.bcm.edu;ucsc.edu 37 4 126373477 126373477 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FAU 2197 broad.mit.edu 37 11 64888530 64888530 + Intron SNP C A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FAU 2197 broad.mit.edu;hgsc.bcm.edu 37 11 64888968 64888968 + Intron SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FAU 2197 hgsc.bcm.edu 37 11 64888455 64888455 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBF1 85302 broad.mit.edu;hgsc.bcm.edu 37 17 73913852 73913852 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBF1 85302 broad.mit.edu;ucsc.edu 37 17 73934245 73934245 + 5'UTR SNP G A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBF1 85302 hgsc.bcm.edu;ucsc.edu 37 17 73926147 73926147 + Intron SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBF1 85302 hgsc.bcm.edu;ucsc.edu 37 17 73927360 73927360 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBL 2091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40330954 40330954 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu 37 22 45959178 45959178 + 3'UTR SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45928965 45928965 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45929741 45929741 + Silent SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45931087 45931087 + Silent SNP C C T rs144704783 unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45937233 45937233 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45938163 45938163 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45960802 45960802 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN2 2199 broad.mit.edu 37 3 13612493 13612493 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBLN2 2199 broad.mit.edu 37 3 13649672 13649672 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBLN2 2199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 13659663 13659663 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBLN2 2199 broad.mit.edu;ucsc.edu 37 3 13670697 13670697 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBLN5 10516 broad.mit.edu 37 14 92413647 92413647 + 5'UTR SNP C G G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBLN7 129804 broad.mit.edu 37 2 112896287 112896287 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBLN7 129804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 112944841 112944841 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48718059 48718059 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48748913 48748913 + Silent SNP C C A rs140649 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48764807 48764807 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48779393 48779393 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48782117 48782117 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 hgsc.bcm.edu;ucsc.edu 37 15 48725074 48725074 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN1 2200 hgsc.bcm.edu;ucsc.edu 37 15 48780624 48780624 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBN1 2200 hgsc.bcm.edu;ucsc.edu 37 15 48787391 48787391 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBN1 2200 hgsc.bcm.edu;ucsc.edu 37 15 48936936 48936936 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 broad.mit.edu 37 5 127782119 127782119 + Intron SNP T C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127609608 127609608 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127637113 127637113 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127642858 127642858 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127645724 127645724 + Silent SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127664442 127664442 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127673799 127673799 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127685089 127685089 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127700355 127700355 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127714472 127714472 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127782277 127782277 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBN2 2201 hgsc.bcm.edu 37 5 127607734 127607735 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 hgsc.bcm.edu;ucsc.edu 37 5 127613688 127613688 + Missense_Mutation SNP T T G novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 hgsc.bcm.edu;ucsc.edu 37 5 127647000 127647000 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 hgsc.bcm.edu;ucsc.edu 37 5 127686561 127686561 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN2 2201 hgsc.bcm.edu;ucsc.edu 37 5 127712442 127712442 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8162185 8162185 + Silent SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8165827 8165827 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8175825 8175825 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8194141 8194141 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8196481 8196481 + Silent SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN3 84467 broad.mit.edu;ucsc.edu 37 19 8201371 8201371 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBN3 84467 hgsc.bcm.edu 37 19 8183871 8183871 + Missense_Mutation SNP G G A rs35579498 bycluster;byfrequency;by1000genomes TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBN3 84467 hgsc.bcm.edu 37 19 8193952 8193952 + Silent SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBN3 84467 hgsc.bcm.edu;ucsc.edu 37 19 8148162 8148162 + Silent SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBN3 84467 hgsc.bcm.edu;ucsc.edu 37 19 8183824 8183825 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBP1 2203 hgsc.bcm.edu 37 9 97365720 97365720 + Silent SNP T T C rs1769257 bycluster;byfrequency;byhapmap;by1000genomes TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBP1 2203 hgsc.bcm.edu;ucsc.edu 37 9 97369216 97369216 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBRS 64319 broad.mit.edu;hgsc.bcm.edu 37 16 30679940 30679940 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBRS(dist=4958) 0 hgsc.bcm.edu 37 16 30687089 30687089 + IGR SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBRS(dist=4958) 0 hgsc.bcm.edu 37 16 30687089 30687089 + IGR SNP G G A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBRSL1 57666 hgsc.bcm.edu 37 12 133084736 133084736 + Intron SNP C C G rs55934523 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL13 222235 broad.mit.edu;hgsc.bcm.edu 37 7 102665656 102665656 + Silent SNP A A G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL13 222235 hgsc.bcm.edu;ucsc.edu 37 7 102517966 102517966 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL13 222235 hgsc.bcm.edu;ucsc.edu 37 7 102518015 102518015 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXL13 222235 hgsc.bcm.edu;ucsc.edu 37 7 102665597 102665597 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL14 144699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 1702196 1702196 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL16 146330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 745593 745593 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL17 64839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 107703606 107703606 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL18 80028 broad.mit.edu;ucsc.edu 37 7 5541300 5541300 + Silent SNP G A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXL18 80028 hgsc.bcm.edu 37 7 5521537 5521537 + Missense_Mutation SNP T T A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXL19 54620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30939867 30939867 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL21 26223 hgsc.bcm.edu 37 5 135276202 135276204 + In_Frame_Del DEL GTT GTT - rs1160982 bycluster;byfrequency;by1000genomes TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 GTT GTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL2 25827 broad.mit.edu 37 3 33427797 33427797 + 3'UTR DEL A - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXL2 25827 broad.mit.edu 37 3 33427849 33427849 + 3'UTR DEL A - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXL3 26224 hgsc.bcm.edu 37 13 77581415 77581415 + Silent SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXL3 26224 hgsc.bcm.edu;ucsc.edu 37 13 77595752 77595752 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL4 26235 broad.mit.edu;hgsc.bcm.edu 37 6 99365256 99365256 + Silent SNP A A C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL4 26235 hgsc.bcm.edu;ucsc.edu 37 6 99365322 99365322 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL4 26235 hgsc.bcm.edu;ucsc.edu 37 6 99365325 99365326 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXL5 26234 broad.mit.edu 37 4 15607173 15607173 + 3'UTR SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO10 26267 broad.mit.edu 37 9 37584083 37584083 + Intron DEL T - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO10 26267 hgsc.bcm.edu 37 9 37537374 37537374 + Silent SNP T T A rs186419638 by1000genomes TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO11 80204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48050392 48050392 + Silent SNP A A T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO11 80204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48066061 48066061 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO11 80204 hgsc.bcm.edu 37 2 48036736 48036736 + Intron SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO11 80204 hgsc.bcm.edu 37 2 48040362 48040364 + In_Frame_Del DEL AAC AAC - novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO15 201456 hgsc.bcm.edu;ucsc.edu 37 18 71790669 71790669 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO17 115290 broad.mit.edu 37 19 39433181 39433181 + 3'UTR SNP G A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO18 84893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5937075 5937075 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO18 84893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5948166 5948166 + Silent SNP T T C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO18 84893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5951142 5951142 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO18 84893 hgsc.bcm.edu;ucsc.edu 37 10 5953065 5953070 + In_Frame_Del DEL GGAGAA GGAGAA - novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 GGAGAA GGAGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO18 84893 hgsc.bcm.edu;ucsc.edu 37 10 5963284 5963284 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO18 84893 hgsc.bcm.edu;ucsc.edu 37 10 5967396 5967404 + In_Frame_Del DEL ATTTTGTGA ATTTTGTGA - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 ATTTTGTGA ATTTTGTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO21 23014 hgsc.bcm.edu;ucsc.edu 37 12 117627030 117627030 + Splice_Site SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO22 26263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 76222396 76222396 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO2 26232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11709907 11709907 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO24 26261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100184248 100184248 + 5'UTR SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO27 126433 hgsc.bcm.edu;ucsc.edu 37 19 39517640 39517640 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO27 126433 hgsc.bcm.edu;ucsc.edu 37 19 39521925 39521925 + Missense_Mutation SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO28 23219 hgsc.bcm.edu;ucsc.edu 37 1 224345385 224345385 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO30 84085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146126842 146126842 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO31 79791 broad.mit.edu;hgsc.bcm.edu 37 16 87394002 87394002 + RNA SNP A A T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO3 26273 broad.mit.edu;ucsc.edu 37 11 33790514 33790514 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO3 26273 hgsc.bcm.edu;ucsc.edu 37 11 33763575 33763575 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO34 55030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55817459 55817459 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO34 55030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55817639 55817639 + Silent SNP T T G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO34 55030 hgsc.bcm.edu 37 14 55817989 55817990 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO34 55030 hgsc.bcm.edu 37 14 55817989 55817990 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO38 81545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147778625 147778625 + Silent SNP G G A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO38 81545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147781573 147781573 + Silent SNP A A G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO38 81545 hgsc.bcm.edu 37 5 147821561 147821561 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO38 81545 hgsc.bcm.edu 37 5 147821566 147821566 + Silent SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO39 162517 broad.mit.edu 37 17 6690865 6690866 + 3'UTR INS - TC TC rs113985581 unknown;alternate_allele TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO39 162517 broad.mit.edu 37 17 6690865 6690866 + 3'UTR INS - TC TC rs113985581 unknown;alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO39 162517 broad.mit.edu;ucsc.edu 37 17 6684202 6684202 + Missense_Mutation SNP A C C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO40 51725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121340772 121340772 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO40 51725 broad.mit.edu;ucsc.edu 37 3 121339403 121339403 + 5'UTR SNP C T T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO40 51725 hgsc.bcm.edu 37 3 121340509 121340509 + Missense_Mutation SNP G G A rs78367832 byfrequency;by1000genomes TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO41 150726 broad.mit.edu;hgsc.bcm.edu 37 2 73496700 73496700 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO42 54455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16577186 16577186 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO42 54455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16583146 16583146 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO4 26272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41927219 41927219 + Silent SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO4 26272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41934379 41934379 + Silent SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO4 26272 hgsc.bcm.edu;ucsc.edu 37 5 41929897 41929897 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO43 286151 broad.mit.edu 37 8 101149283 101149283 + Intron DEL T - - rs11291223 bycluster TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO43 286151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101146397 101146398 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO43 286151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101153402 101153402 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO43 286151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101153613 101153613 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO43 286151 hgsc.bcm.edu 37 8 101153258 101153258 + Silent SNP T T C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO47(dist=11958) 0 hgsc.bcm.edu;ucsc.edu 37 17 37135613 37135613 + IGR SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO5 26271 broad.mit.edu 37 6 153292021 153292021 + 3'UTR DEL T - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO5 26271 broad.mit.edu 37 6 153292194 153292194 + 3'UTR SNP G A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXO5 26271 hgsc.bcm.edu;ucsc.edu 37 6 153294238 153294238 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO7 25793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32875201 32875201 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO7 25793 hgsc.bcm.edu;ucsc.edu 37 22 32894289 32894290 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO9 26268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52943655 52943655 + Silent SNP T T C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXO9 26268 hgsc.bcm.edu 37 6 52945852 52945852 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXO9 26268 hgsc.bcm.edu 37 6 52957228 52957228 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXW10 10517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18682177 18682177 + Missense_Mutation SNP C C A rs150642944 unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXW11 23291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 171299957 171299957 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXW5 54461 hgsc.bcm.edu 37 9 139837370 139837370 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXW5 54461 hgsc.bcm.edu 37 9 139837902 139837902 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXW7 55294 broad.mit.edu 37 4 153273982 153273982 + Intron SNP C A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FBXW7 55294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 153244135 153244135 + Silent SNP C C G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBXW7 55294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 153332528 153332528 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FBXW8 26259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117448166 117448166 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXW8 26259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117448167 117448167 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FBXW8 26259 hgsc.bcm.edu 37 12 117448164 117448164 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FBXW9 84261 broad.mit.edu;hgsc.bcm.edu 37 19 12807200 12807200 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCAR 2204 broad.mit.edu 37 19 55401272 55401272 + 3'UTR SNP C A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCAR 2204 broad.mit.edu 37 19 55401331 55401331 + 3'UTR DEL T - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCAR 2204 broad.mit.edu;hgsc.bcm.edu 37 19 55396904 55396904 + Missense_Mutation SNP C C T rs143972917 unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCAR 2204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55399613 55399613 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCER1A 2205 broad.mit.edu 37 1 159277845 159277845 + 3'UTR SNP G T T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCER1A 2205 broad.mit.edu;hgsc.bcm.edu 37 1 159277759 159277759 + 3'UTR SNP T T G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCER1A 2205 hgsc.bcm.edu;ucsc.edu 37 1 159272625 159272625 + Intron SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCGBP 8857 broad.mit.edu 37 19 40354067 40354067 + 3'UTR SNP T C C rs2405 bycluster;byfrequency;by1000genomes TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGBP 8857 broad.mit.edu 37 19 40363154 40363154 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGBP 8857 broad.mit.edu 37 19 40367841 40367841 + Silent SNP T G G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGBP 8857 broad.mit.edu 37 19 40376319 40376319 + Silent SNP G A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGBP 8857 broad.mit.edu 37 19 40383839 40383840 + Frame_Shift_Ins INS - GT GT novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGBP 8857 broad.mit.edu 37 19 40398046 40398046 + Silent SNP A G G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGBP 8857 broad.mit.edu;hgsc.bcm.edu 37 19 40376809 40376809 + Silent SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGBP 8857 broad.mit.edu;hgsc.bcm.edu 37 19 40420153 40420153 + Silent SNP G G C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGBP 8857 hgsc.bcm.edu 37 19 40408822 40408822 + Silent SNP G G A rs139323545 byfrequency TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCGR1A 2209 broad.mit.edu 37 1 149763191 149763191 + 3'UTR SNP G A A rs1050212 bycluster;by2hit2allele TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGR1A 2209 broad.mit.edu 37 1 149763191 149763191 + 3'UTR SNP G A A rs1050212 bycluster;by2hit2allele TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGR1A 2209 broad.mit.edu 37 1 149763191 149763191 + 3'UTR SNP G A A rs1050212 bycluster;by2hit2allele TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGR1A 2209 broad.mit.edu 37 1 149763191 149763191 + 3'UTR SNP G A A rs1050212 bycluster;by2hit2allele TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGR1B 2210 hgsc.bcm.edu 37 1 120927292 120927292 + Missense_Mutation SNP T T C rs1050204 bycluster;byfrequency;by2hit2allele TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCGR1B 2210 hgsc.bcm.edu;ucsc.edu 37 1 120935917 120935917 + 5'UTR SNP T T C rs1848782 bycluster;by2hit2allele;byhapmap TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCGR2B 2213 broad.mit.edu 37 1 161647424 161647424 + 3'UTR SNP G T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGR2C 9103 broad.mit.edu;hgsc.bcm.edu 37 1 161569613 161569613 + 3'UTR SNP T T G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGR2C 9103 hgsc.bcm.edu 37 1 161565324 161565324 + Intron SNP C T T rs78763831 unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCGR3A 2214 broad.mit.edu 37 1 161512660 161512660 + 3'UTR SNP C T T rs114559215 byfrequency;by1000genomes;alternate_allele TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGR3B 2215 broad.mit.edu;hgsc.bcm.edu 37 1 161599725 161599725 + Silent SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGR3B 2215 broad.mit.edu;hgsc.bcm.edu 37 1 161599827 161599827 + Splice_Site SNP T T G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGR3B 2215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161595993 161595993 + Silent SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGRT 2217 broad.mit.edu 37 19 50016971 50016972 + Intron INS - TCTCTCTCTC TCTCTCTCTC novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGRT 2217 broad.mit.edu 37 19 50017102 50017102 + Intron SNP G T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCGRT 2217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50017370 50017370 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCGRT 2217 hgsc.bcm.edu 37 19 50017140 50017140 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCHO1 23149 broad.mit.edu 37 19 17899288 17899289 + 3'UTR INS - CAGC CAGC novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCHO1 23149 broad.mit.edu 37 19 17899292 17899293 + 3'UTR DEL CA - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCHO1 23149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17865951 17865951 + 5'UTR SNP G G C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCHO2 115548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 72333026 72333026 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCHSD1 89848 broad.mit.edu 37 5 141021013 141021013 + 3'UTR SNP A C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCHSD1 89848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141025713 141025713 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCHSD1 89848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141027542 141027542 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCHSD1 89848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141028860 141028860 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCHSD2 9873 broad.mit.edu 37 11 72549650 72549650 + 3'UTR DEL A - - rs113447165 unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCHSD2 9873 broad.mit.edu 37 11 72549650 72549650 + 3'UTR DEL A - - rs113447165 unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCHSD2 9873 broad.mit.edu 37 11 72549650 72549650 + 3'UTR DEL A - - rs113447165 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCHSD2 9873 hgsc.bcm.edu 37 11 72600920 72600920 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCN1 2219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 137805435 137805435 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCN3 8547 hgsc.bcm.edu 37 1 27699671 27699671 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCN3 8547 hgsc.bcm.edu;ucsc.edu 37 1 27695848 27695852 + Frame_Shift_Del DEL CGGTA CGGTA - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 CGGTA CGGTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL1 115350 broad.mit.edu 37 1 157789883 157789883 + Translation_Start_Site SNP C T T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCRL1 115350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157767975 157767975 + Missense_Mutation SNP G G T rs150869330 unknown;alternate_allele TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL1 115350 hgsc.bcm.edu;ucsc.edu 37 1 157765910 157765910 + Silent SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCRL2 79368 broad.mit.edu 37 1 157716433 157716433 + 3'UTR SNP T G G rs75480906 unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCRL2 79368 broad.mit.edu;ucsc.edu 37 1 157739752 157739752 + Missense_Mutation SNP C T T rs138011295 unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCRL3 115352 broad.mit.edu 37 1 157666163 157666163 + Intron SNP A C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FCRL3 115352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157650775 157650775 + Silent SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL3 115352 hgsc.bcm.edu 37 1 157650569 157650569 + Splice_Region SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCRL4 83417 broad.mit.edu;hgsc.bcm.edu 37 1 157545298 157545298 + 3'UTR SNP G G A rs61023553 byfrequency;by1000genomes TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL4 83417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157556209 157556209 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL4 83417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157566118 157566118 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL4 83417 hgsc.bcm.edu;ucsc.edu 37 1 157557663 157557663 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL4 83417 hgsc.bcm.edu;ucsc.edu 37 1 157557715 157557715 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCRL5 83416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157491077 157491077 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL5 83416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157494128 157494128 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL5 83416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157497598 157497598 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL5 83416 hgsc.bcm.edu 37 1 157485438 157485438 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRL5 83416 hgsc.bcm.edu 37 1 157494179 157494179 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCRL5 83416 hgsc.bcm.edu;ucsc.edu 37 1 157490914 157490914 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FCRLA 84824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161677075 161677075 + Silent SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FCRLB 127943 hgsc.bcm.edu 37 1 161693269 161693269 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FDPS 2224 broad.mit.edu 37 1 155287476 155287476 + Intron DEL A - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FDPS 2224 broad.mit.edu;hgsc.bcm.edu 37 1 155279736 155279736 + Silent SNP A A G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FDPS 2224 hgsc.bcm.edu;ucsc.edu 37 1 155289628 155289628 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FDX1L 112812 broad.mit.edu 37 19 10421114 10421114 + 3'UTR SNP A G G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FDXACB1 91893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111749783 111749783 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FECH 2235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55233773 55233773 + Silent SNP A A G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FECH 2235 broad.mit.edu;ucsc.edu 37 18 55221616 55221616 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FECH 2235 hgsc.bcm.edu;ucsc.edu 37 18 55238682 55238682 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FEM1B 10116 broad.mit.edu;ucsc.edu 37 15 68582835 68582835 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FEM1B 10116 hgsc.bcm.edu;ucsc.edu 37 15 68582267 68582267 + Silent SNP T T C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FEM1C 56929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 114878826 114878826 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FEM1C 56929 broad.mit.edu;ucsc.edu 37 5 114860153 114860153 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FEM1C 56929 hgsc.bcm.edu 37 5 114860558 114860558 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FEN1 2237 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61563635 61563636 + Frame_Shift_Ins INS - - AC novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FER1L5 90342 hgsc.bcm.edu;ucsc.edu 37 2 97335947 97335947 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FER1L5 90342 hgsc.bcm.edu;ucsc.edu 37 2 97366098 97366098 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FER1L6 654463 broad.mit.edu;hgsc.bcm.edu 37 8 125035809 125035809 + Silent SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FER1L6 654463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125052244 125052244 + Silent SNP A A T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FER1L6 654463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125072866 125072866 + Silent SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FER1L6 654463 hgsc.bcm.edu 37 8 125015549 125015549 + Silent SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FER1L6 654463 hgsc.bcm.edu;ucsc.edu 37 8 124987507 124987507 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FERD3L 222894 hgsc.bcm.edu 37 7 19184746 19184747 + In_Frame_Ins INS - - TCT rs34966908 bycluster;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FERMT1 55612 broad.mit.edu;ucsc.edu 37 20 6069695 6069695 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FERMT2 10979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53339598 53339598 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FERMT2 10979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53385908 53385908 + Silent SNP A A G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FERMT2 10979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53417220 53417220 + Missense_Mutation SNP G G A rs147527926 byfrequency TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FERMT3 83706 broad.mit.edu 37 11 63990997 63990997 + 3'UTR DEL C - - rs149902725 bycluster;by1000genomes TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FERMT3 83706 broad.mit.edu 37 11 63990997 63990997 + 3'UTR DEL C - - rs149902725 bycluster;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FERMT3 83706 hgsc.bcm.edu 37 11 63979193 63979193 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FERMT3 83706 hgsc.bcm.edu;ucsc.edu 37 11 63990606 63990607 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FERMT3 83706 hgsc.bcm.edu;ucsc.edu 37 11 63990880 63990880 + Silent SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FES 2242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91430480 91430480 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FETUB 26998 broad.mit.edu;ucsc.edu 37 3 186364117 186364117 + Silent SNP A T T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FETUB 26998 hgsc.bcm.edu;ucsc.edu 37 3 186370105 186370105 + Silent SNP T T G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FEZ1 9638 broad.mit.edu 37 11 125325646 125325646 + Intron SNP A G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FEZ1 9638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 125324081 125324081 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FEZ2 9637 hgsc.bcm.edu 37 2 36785599 36785599 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FFAR2 2867 broad.mit.edu;ucsc.edu 37 19 35941423 35941423 + Silent SNP C T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FFAR3(dist=11025) 0 broad.mit.edu;hgsc.bcm.edu 37 19 35862414 35862414 + IGR SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGA 2243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155507521 155507521 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGB 2244 hgsc.bcm.edu 37 4 155487151 155487151 + Silent SNP G G T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGD1 2245 broad.mit.edu 37 X 54475272 54475272 + Silent SNP C T T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGD1 2245 broad.mit.edu 37 X 54491893 54491893 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGD1 2245 hgsc.bcm.edu;ucsc.edu 37 X 54475346 54475346 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGD1 2245 hgsc.bcm.edu;ucsc.edu 37 X 54491907 54491907 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGD2 221472 broad.mit.edu 37 6 36981690 36981690 + Intron SNP C G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGD4 121512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32786521 32786521 + Silent SNP T T G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD5 152273 broad.mit.edu 37 3 14964675 14964675 + Silent SNP G C C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGD5 152273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14862883 14862883 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD5 152273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14964587 14964587 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD5 152273 hgsc.bcm.edu 37 3 14963963 14963963 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGD6 55785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95475264 95475264 + 3'UTR SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD6 55785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95475277 95475277 + 3'UTR SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD6 55785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95546724 95546724 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD6 55785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95546763 95546763 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGD6 55785 hgsc.bcm.edu;ucsc.edu 37 12 95546650 95546650 + Intron SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGD6 55785 hgsc.bcm.edu;ucsc.edu 37 12 95602827 95602827 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGF11 2256 broad.mit.edu 37 17 7347356 7347356 + 3'UTR DEL G - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF11 2256 broad.mit.edu 37 17 7348220 7348220 + 3'UTR DEL C - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF12 2257 broad.mit.edu 37 3 192445062 192445062 + 5'UTR SNP G A A rs11544864 unknown;alternate_allele TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF13 2258 broad.mit.edu;ucsc.edu 37 X 137715047 137715047 + Silent SNP G A A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF13 2258 broad.mit.edu;ucsc.edu 37 X 137793084 137793084 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF13 2258 broad.mit.edu;ucsc.edu 37 X 138286289 138286289 + 5'UTR SNP A T T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF14 2259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103053874 103053874 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGF17 8822 broad.mit.edu;hgsc.bcm.edu 37 8 21903771 21903771 + Silent SNP C C A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGF19 9965 hgsc.bcm.edu 37 11 69514321 69514321 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGF20 26281 hgsc.bcm.edu;ucsc.edu 37 8 16850793 16850793 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGF2 2247 hgsc.bcm.edu;ucsc.edu 37 4 123813456 123813456 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGF3 2248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 69631129 69631129 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGF6 2251 broad.mit.edu 37 12 4554409 4554409 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF6 2251 hgsc.bcm.edu 37 12 4553398 4553398 + Silent SNP C C G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGF7 2252 hgsc.bcm.edu 37 15 49776509 49776509 + Silent SNP A A G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGF7 2252 hgsc.bcm.edu 37 15 49776514 49776514 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGF8 2253 broad.mit.edu 37 10 103529922 103529922 + 3'UTR DEL C - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGF8 2253 hgsc.bcm.edu 37 10 103534502 103534502 + Silent SNP G G A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGFBP1 9982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 15938034 15938034 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFBP1 9982 hgsc.bcm.edu;ucsc.edu 37 4 15937909 15937909 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGFBP3 143282 broad.mit.edu;hgsc.bcm.edu 37 10 93668183 93668183 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR1 2260 broad.mit.edu;hgsc.bcm.edu 37 8 38275767 38275767 + Missense_Mutation SNP C C G rs121909637 unknown;alternate_allele TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FGFR1 2260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38272389 38272389 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR1 2260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38282176 38282176 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR1 2260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38314935 38314935 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR1OP 11116 broad.mit.edu 37 6 167453552 167453552 + 3'UTR DEL A - - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGFR1OP 11116 hgsc.bcm.edu 37 6 167413541 167413541 + Intron SNP T T C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR1OP2 26127 broad.mit.edu 37 12 27118705 27118705 + 3'UTR DEL G - - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGFR2 2263 broad.mit.edu;hgsc.bcm.edu 37 10 123353230 123353230 + Silent SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR2 2263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123298145 123298145 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR2 2263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123298147 123298147 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR2 2263 hgsc.bcm.edu;ucsc.edu 37 10 123324096 123324096 + Intron SNP G G T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR3 2261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1804696 1804696 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FGFR3 2261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1807850 1807850 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FGFR3 2261 hgsc.bcm.edu 37 4 1806217 1806217 + Silent SNP C C T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGFR3 2261 hgsc.bcm.edu 37 4 1807542 1807543 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR3 2261 hgsc.bcm.edu 37 4 1807542 1807543 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGFR3 2261 hgsc.bcm.edu 37 4 1808389 1808389 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGFR3 2261 hgsc.bcm.edu 37 4 1808389 1808389 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGFR4 2264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176520705 176520705 + Missense_Mutation SNP G G T rs141384037 unknown;alternate_allele TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FGFR4 2264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176524604 176524604 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FGFR4 2264 hgsc.bcm.edu;ucsc.edu 37 5 176516674 176516674 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGG 2266 broad.mit.edu 37 4 155527857 155527857 + Missense_Mutation SNP C T T rs192482410 by1000genomes;alternate_allele TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGGY 55277 hgsc.bcm.edu 37 1 60139710 60139710 + Splice_Site SNP G G C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGGY 55277 hgsc.bcm.edu 37 1 60139711 60139711 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGL2 10875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 76829078 76829078 + Silent SNP T T C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FGL2 10875 broad.mit.edu;ucsc.edu 37 7 76826154 76826154 + Silent SNP C T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FGL2 10875 hgsc.bcm.edu 37 7 76828961 76828961 + Silent SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FGR 2268 hgsc.bcm.edu;ucsc.edu 37 1 27941092 27941092 + Silent SNP T T C novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FHAD1 114827 broad.mit.edu 37 1 15655097 15655097 + Intron DEL A - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FHAD1 114827 hgsc.bcm.edu;ucsc.edu 37 1 15684617 15684617 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FHAD1 114827 hgsc.bcm.edu;ucsc.edu 37 1 15695983 15695983 + Silent SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FHL1 2273 hgsc.bcm.edu 37 X 135290019 135290019 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FHL2 2274 broad.mit.edu;ucsc.edu 37 2 105977880 105977880 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FHL5 9457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97052642 97052642 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHL5 9457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97063550 97063550 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHOD1 29109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67264329 67264329 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHOD1 29109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67264547 67264547 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHOD1 29109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67265179 67265179 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHOD1 29109 hgsc.bcm.edu 37 16 67272131 67272131 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FHOD3 80206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34156435 34156435 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHOD3 80206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34192014 34192014 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FHOD3 80206 hgsc.bcm.edu 37 18 34191947 34191947 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FIBCD1 84929 broad.mit.edu 37 9 133799697 133799697 + Silent SNP C T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FIBP 9158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65653801 65653801 + Silent SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIG4 9896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110053850 110053850 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIG4 9896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110083350 110083350 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIG4 9896 hgsc.bcm.edu 37 6 110053824 110053824 + Intron SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIGF 2277 broad.mit.edu 37 X 15402300 15402301 + Translation_Start_Site INS - CTCATG CTCATG novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FIGF 2277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15402054 15402054 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIGF 2277 hgsc.bcm.edu;ucsc.edu 37 X 15376270 15376270 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FIGLA 344018 hgsc.bcm.edu 37 2 71004492 71004492 + 3'UTR SNP T T C rs56316086 bycluster;by1000genomes TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FIGLA 344018 hgsc.bcm.edu 37 2 71004494 71004494 + 3'UTR SNP A A T rs56135050 bycluster;byfrequency;by1000genomes TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FIGN 55137 broad.mit.edu 37 2 164464729 164464730 + 3'UTR DEL TC - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FIGN 55137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 164466509 164466509 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIGN 55137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 164468066 164468066 + Silent SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIGN 55137 hgsc.bcm.edu 37 2 164466233 164466234 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIGNL1 63979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50513982 50513982 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIGNL2 401720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52216199 52216199 + Silent SNP T T G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FILIP1 27145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 76022977 76022977 + Silent SNP A A T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FILIP1L 11259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 99568696 99568696 + Silent SNP A A G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIP1L1 81608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 54265975 54265975 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIP1L1 81608 hgsc.bcm.edu;ucsc.edu 37 4 54256754 54256755 + Frame_Shift_Ins INS - - AG novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FIS1 51024 broad.mit.edu 37 7 100883107 100883107 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FITM1 161247 broad.mit.edu 37 14 24600851 24600851 + Missense_Mutation SNP G A A rs139596139 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FITM2 128486 hgsc.bcm.edu;ucsc.edu 37 20 42935614 42935614 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FITM2 128486 hgsc.bcm.edu;ucsc.edu 37 20 42935674 42935674 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FIZ1 84922 broad.mit.edu 37 19 56104632 56104632 + Silent SNP C T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FIZ1 84922 broad.mit.edu;hgsc.bcm.edu 37 19 56109181 56109181 + Silent SNP G G A rs189301284 by1000genomes TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBP11 51303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49315838 49315838 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBP15 23307 broad.mit.edu 37 9 115928291 115928291 + 3'UTR SNP G A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBP15 23307 broad.mit.edu 37 9 115932150 115932151 + In_Frame_Ins INS - TTC TTC rs113480096 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBP15 23307 broad.mit.edu 37 9 115973865 115973865 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBP15 23307 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 115932898 115932898 + Silent SNP G G T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBP15 23307 hgsc.bcm.edu;ucsc.edu 37 9 115931605 115931605 + Silent SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FKBP3 2287 hgsc.bcm.edu;ucsc.edu 37 14 45590162 45590162 + Intron SNP A A G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBP5 2289 broad.mit.edu 37 6 35554625 35554625 + Intron DEL T - - rs112376611 unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBP5 2289 broad.mit.edu 37 6 35694797 35694797 + Intron DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBP6 8468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72745747 72745747 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBP7 51661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179341870 179341870 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBP9 11328 hgsc.bcm.edu 37 7 33039811 33039811 + Silent SNP C C T rs79110989 unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FKBP9L 360132 broad.mit.edu 37 7 55755510 55755510 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBP9L 360132 broad.mit.edu 37 7 55755682 55755682 + Intron SNP G C C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBPL 63943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32097079 32097079 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKBPL 63943 broad.mit.edu;ucsc.edu 37 6 32096783 32096783 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKBPL 63943 broad.mit.edu;ucsc.edu 37 6 32097100 32097100 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FKTN 2218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 108363427 108363427 + Missense_Mutation SNP G G A rs146951171 byfrequency TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FKTN 2218 hgsc.bcm.edu;ucsc.edu 37 9 108377609 108377609 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLAD1 80308 broad.mit.edu 37 1 154965555 154965555 + 3'UTR SNP A G G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLAD1 80308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154960848 154960848 + Missense_Mutation SNP G G A rs145054820 bycluster;byfrequency;by1000genomes TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLAD1 80308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154962043 154962043 + Silent SNP T T G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLAD1 80308 broad.mit.edu;ucsc.edu 37 1 154956241 154956241 + Nonsense_Mutation SNP T A A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLAD1 80308 hgsc.bcm.edu 37 1 154960802 154960802 + Silent SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLAD1 80308 hgsc.bcm.edu 37 1 154962033 154962033 + Intron SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLCN 201163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17119744 17119744 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu 37 1 152277657 152277657 + Silent SNP A A G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu 37 1 152280282 152280282 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu 37 1 152283060 152283060 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu 37 1 152287246 152287246 + Intron SNP G G T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152279668 152279668 + Missense_Mutation SNP G G T rs182787187 by1000genomes;alternate_allele TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152279938 152279938 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152282336 152282336 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152283596 152283596 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152285874 152285874 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152286259 152286260 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 hgsc.bcm.edu 37 1 152281097 152281097 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLG 2312 hgsc.bcm.edu 37 1 152286260 152286260 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG 2312 hgsc.bcm.edu;ucsc.edu 37 1 152284057 152284057 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLG 2312 hgsc.bcm.edu;ucsc.edu 37 1 152287813 152287813 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG2 388698 broad.mit.edu;hgsc.bcm.edu 37 1 152324078 152324078 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG2 388698 broad.mit.edu;hgsc.bcm.edu 37 1 152330075 152330075 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG2 388698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152323999 152323999 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG2 388698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152326741 152326741 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG2 388698 broad.mit.edu;ucsc.edu 37 1 152324635 152324635 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLG2 388698 hgsc.bcm.edu 37 1 152327667 152327667 + Silent SNP C C T rs12738471 bycluster;byfrequency TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLG2 388698 hgsc.bcm.edu;ucsc.edu 37 1 152327665 152327670 + In_Frame_Del DEL CCCGAA CCCGAA - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 CCCGAA CCCGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLI1 2313 broad.mit.edu;ucsc.edu 37 11 128680490 128680490 + Silent SNP C T T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLII 2314 hgsc.bcm.edu 37 17 18156613 18156613 + Splice_Site SNP A A C novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLII 2314 hgsc.bcm.edu;ucsc.edu 37 17 18156764 18156764 + Silent SNP A A T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ10357 0 hgsc.bcm.edu;ucsc.edu 37 14 21553992 21553992 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ10661 0 broad.mit.edu 37 8 8088411 8088411 + RNA SNP A G G rs2980481 bycluster;byfrequency TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ10661 0 broad.mit.edu 37 8 8092007 8092007 + RNA SNP C T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ10661 0 broad.mit.edu 37 8 8093750 8093750 + RNA SNP C T T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ10661 0 broad.mit.edu 37 8 8096026 8096026 + RNA SNP T G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ12825 440101 broad.mit.edu 37 12 54515418 54515418 + RNA SNP C T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ12825 440101 broad.mit.edu 37 12 54515536 54515536 + RNA DEL C - - rs112977992 unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ22536 0 broad.mit.edu 37 6 22136110 22136110 + Intron DEL T - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ32063(dist=286048) 0 hgsc.bcm.edu;ucsc.edu 37 2 200623529 200623529 + IGR SNP A A T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLJ33360 401172 broad.mit.edu 37 5 6312623 6312623 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ33360 401172 broad.mit.edu;hgsc.bcm.edu 37 5 6312489 6312489 + RNA SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLJ35220 0 broad.mit.edu 37 17 78410119 78410119 + 3'UTR SNP T C C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ36000 284124 broad.mit.edu 37 17 21904083 21904083 + RNA SNP C A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ36000 284124 broad.mit.edu 37 17 21904083 21904083 + RNA SNP C A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ36000 284124 broad.mit.edu 37 17 21904193 21904193 + RNA SNP C G G rs9904221 bycluster;by2hit2allele TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ36000 284124 broad.mit.edu 37 17 21904197 21904197 + RNA SNP C T T rs9904223 bycluster;by2hit2allele TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ36000 284124 broad.mit.edu 37 17 21904197 21904197 + RNA SNP C T T rs9904223 bycluster;by2hit2allele TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ36000 284124 broad.mit.edu 37 17 21904204 21904204 + RNA SNP G T T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ37307 0 broad.mit.edu 37 13 52400734 52400734 + Frame_Shift_Del DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ39582 0 broad.mit.edu 37 22 21363175 21363175 + Intron SNP T A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100923 89100924 + Intron INS - G G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100923 89100924 + Intron INS - G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89100946 89100954 + Intron DEL GCTATATCA - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 GCTATATCA GCTATATCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89102464 89102464 + Intron SNP A G G rs113574892 bycluster TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89103729 89103729 + Intron SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ40330 0 broad.mit.edu 37 2 89104958 89104958 + Intron SNP A G G rs71235237 unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ42709 441094 broad.mit.edu 37 5 92879248 92879248 + Intron DEL A - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43859 0 broad.mit.edu 37 9 84547720 84547720 + Missense_Mutation SNP G C C rs815819 bycluster;by2hit2allele TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43859 0 broad.mit.edu 37 9 84547870 84547870 + 3'UTR SNP T C C rs815818 bycluster;byfrequency TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43860 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142444934 142444934 + Silent SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLJ43860 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142445230 142445230 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLJ43860 0 hgsc.bcm.edu 37 8 142459777 142459778 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLJ43860 0 hgsc.bcm.edu 37 8 142488777 142488777 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ43860 0 hgsc.bcm.edu 37 8 142500315 142500315 + Missense_Mutation SNP G G A rs180740682 by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ43950 0 broad.mit.edu 37 9 84531485 84531485 + 3'UTR SNP A T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43950 0 broad.mit.edu 37 9 84531514 84531514 + 3'UTR SNP C A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43950 0 broad.mit.edu 37 9 84532047 84532047 + 3'UTR SNP G T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43950 0 broad.mit.edu 37 9 84532821 84532821 + 3'UTR SNP G C C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43950 0 broad.mit.edu 37 9 84532886 84532886 + 3'UTR SNP T G G rs61750913 byfrequency TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ43950 0 broad.mit.edu 37 9 84532917 84532917 + 3'UTR SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ44635 392490 broad.mit.edu 37 X 71380205 71380205 + 3'UTR SNP T G G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ44635 392490 broad.mit.edu 37 X 71380215 71380215 + 3'UTR SNP C T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLJ45139 400867 hgsc.bcm.edu 37 21 40250793 40250793 + 3'UTR SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ45256 400511 hgsc.bcm.edu 37 16 24674496 24674496 + 3'UTR SNP G G T rs184678061 by1000genomes;alternate_allele TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ45964 401040 hgsc.bcm.edu;ucsc.edu 37 2 240500412 240500412 + 5'UTR SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLJ46321 0 hgsc.bcm.edu 37 9 84608502 84608502 + Silent SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLNA 2316 broad.mit.edu 37 X 153577115 153577116 + 3'UTR INS - G G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLNA 2316 broad.mit.edu 37 X 153599613 153599613 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLNA 2316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153594983 153594983 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLNA 2316 hgsc.bcm.edu 37 X 153593804 153593804 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLNA 2316 hgsc.bcm.edu;ucsc.edu 37 X 153583340 153583340 + Silent SNP C C A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLNB 2317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 57994561 57994561 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLNB 2317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 58128451 58128451 + Silent SNP G G A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLNB 2317 hgsc.bcm.edu 37 3 58088038 58088038 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLNB 2317 hgsc.bcm.edu 37 3 58117686 58117686 + Intron SNP C C G novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLNC 2318 broad.mit.edu;hgsc.bcm.edu 37 7 128484128 128484128 + Missense_Mutation SNP T T G rs184454068 by1000genomes;alternate_allele TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLNC 2318 broad.mit.edu;hgsc.bcm.edu 37 7 128494133 128494133 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLNC 2318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128484237 128484237 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLNC 2318 hgsc.bcm.edu;ucsc.edu 37 7 128483008 128483008 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86088605 86088605 + Silent SNP C C T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86088731 86088731 + Silent SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86088842 86088842 + Silent SNP C C T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86089421 86089421 + Silent SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86089519 86089519 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86089641 86089641 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLRT3 23767 broad.mit.edu 37 20 14306094 14306094 + 3'UTR SNP T C C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLRT3 23767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 14307334 14307334 + Silent SNP G G C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLT1 2321 broad.mit.edu 37 13 28896576 28896576 + Intron SNP C G G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLT1 2321 broad.mit.edu;hgsc.bcm.edu 37 13 28903895 28903895 + Intron SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLT1 2321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28913320 28913320 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLT1 2321 hgsc.bcm.edu 37 13 28886155 28886155 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLT1 2321 hgsc.bcm.edu 37 13 28919683 28919683 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLT1 2321 hgsc.bcm.edu;ucsc.edu 37 13 28903788 28903788 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID FLT1 2321 hgsc.bcm.edu;ucsc.edu 37 13 28979950 28979950 + Silent SNP A A T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID FLT3 2322 broad.mit.edu 37 13 28577937 28577937 + 3'UTR DEL A - - novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLT3 2322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28597599 28597599 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLT3 2322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28608527 28608527 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLT4 2324 broad.mit.edu;hgsc.bcm.edu 37 5 180047687 180047687 + Silent SNP G G A rs139263798 unknown;alternate_allele TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLT4 2324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180036981 180036981 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLT4 2324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180056415 180056415 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FLT4 2324 hgsc.bcm.edu 37 5 180048826 180048826 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLT4 2324 hgsc.bcm.edu 37 5 180053263 180053263 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FLT4 2324 hgsc.bcm.edu;ucsc.edu 37 5 180039595 180039600 + In_Frame_Del DEL TCAGCA TCAGCA - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 TCAGCA TCAGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLT4 2324 hgsc.bcm.edu;ucsc.edu 37 5 180057623 180057623 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID FLVCR2 55640 broad.mit.edu 37 14 76114227 76114228 + 3'UTR DEL TG - - rs138622317 by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FLVCR2 55640 broad.mit.edu;hgsc.bcm.edu 37 14 76045408 76045408 + Silent SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLVCR2 55640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 76088434 76088434 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLYWCH1 84256 broad.mit.edu;hgsc.bcm.edu 37 16 2983245 2983245 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FLYWCH1 84256 hgsc.bcm.edu;ucsc.edu 37 16 2983285 2983286 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN1 342184 broad.mit.edu 37 15 33358779 33358779 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMN1 342184 hgsc.bcm.edu;ucsc.edu 37 15 33261563 33261563 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMN1 342184 hgsc.bcm.edu;ucsc.edu 37 15 33261665 33261668 + Frame_Shift_Del DEL AGTT AGTT - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 AGTT AGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN1 342184 hgsc.bcm.edu;ucsc.edu 37 15 33358776 33358776 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMN1 342184 hgsc.bcm.edu;ucsc.edu 37 15 33358817 33358817 + Silent SNP C C T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMN2 56776 broad.mit.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC - - rs140531536 bycluster;by1000genomes TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMN2 56776 broad.mit.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC - - rs140531536 bycluster;by1000genomes TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMN2 56776 broad.mit.edu 37 1 240370978 240370978 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMN2 56776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240370231 240370231 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240492737 240492737 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 broad.mit.edu;ucsc.edu 37 1 240370625 240370625 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMN2 56776 hgsc.bcm.edu 37 1 240256745 240256745 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMN2 56776 hgsc.bcm.edu 37 1 240370934 240370934 + Missense_Mutation SNP G G C rs4997328 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMN2 56776 hgsc.bcm.edu 37 1 240370966 240370998 + In_Frame_Del DEL GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu 37 1 240370966 240370998 + In_Frame_Del DEL GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu 37 1 240371023 240371055 + In_Frame_Del DEL CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu 37 1 240371034 240371034 + Silent SNP A A C rs150102515 byfrequency TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu 37 1 240371075 240371075 + Missense_Mutation SNP C C T rs71646825 bycluster;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu 37 1 240371112 240371112 + Silent SNP G G T rs71646889 bycluster;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu 37 1 240371469 240371469 + Silent SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMN2 56776 hgsc.bcm.edu;ucsc.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC GGC - rs140531536 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL1 752 broad.mit.edu 37 17 43324263 43324263 + 3'UTR SNP G C C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMNL1 752 broad.mit.edu;hgsc.bcm.edu 37 17 43311611 43311611 + Intron SNP A A T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL1 752 broad.mit.edu;hgsc.bcm.edu 37 17 43318890 43318890 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL1 752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43323619 43323619 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL2 114793 hgsc.bcm.edu 37 2 153476066 153476066 + Silent SNP G G A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL2 114793 hgsc.bcm.edu 37 2 153476066 153476067 + In_Frame_Ins INS - - CCA rs5835439 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL2 114793 hgsc.bcm.edu 37 2 153476069 153476069 + Silent SNP C C A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL2 114793 hgsc.bcm.edu 37 2 153493057 153493059 + In_Frame_Del DEL AAT AAT - novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 AAT AAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL3 91010 broad.mit.edu 37 12 50037386 50037386 + 3'UTR SNP C T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMNL3 91010 broad.mit.edu;hgsc.bcm.edu 37 12 50045173 50045173 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMNL3 91010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50050231 50050231 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMO1 2326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171244561 171244561 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMO2 2327 broad.mit.edu 37 1 171178243 171178243 + 3'UTR SNP G C C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMO2 2327 broad.mit.edu 37 1 171178335 171178336 + 3'UTR INS - A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMO2 2327 broad.mit.edu 37 1 171178336 171178336 + 3'UTR DEL A - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMO2 2327 broad.mit.edu 37 1 171178336 171178336 + 3'UTR DEL A - - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMO2 2327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171173043 171173043 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMO2 2327 hgsc.bcm.edu;ucsc.edu 37 1 171174636 171174637 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMO4 2329 broad.mit.edu 37 1 171311117 171311119 + 3'UTR DEL TCT - - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMO5 2330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 146672930 146672930 + Silent SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMO5 2330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 146696569 146696569 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMO5 2330 hgsc.bcm.edu;ucsc.edu 37 1 146656103 146656103 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMOD 2331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203316788 203316788 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMOD 2331 broad.mit.edu;ucsc.edu 37 1 203316461 203316461 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FMR1 2332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 147014114 147014114 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMR1 2332 hgsc.bcm.edu 37 X 147011504 147011504 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMR1 2332 hgsc.bcm.edu;ucsc.edu 37 X 147030317 147030317 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FMR1NB 158521 broad.mit.edu;hgsc.bcm.edu 37 X 147062896 147062896 + 5'UTR SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMR1NB 158521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 147088242 147088242 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FMR1NB 158521 hgsc.bcm.edu;ucsc.edu 37 X 147088324 147088324 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FN1 2335 broad.mit.edu 37 2 216244327 216244327 + Intron DEL A - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN1 2335 broad.mit.edu 37 2 216245513 216245513 + Intron SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN1 2335 broad.mit.edu;hgsc.bcm.edu 37 2 216298131 216298131 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FN1 2335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216236992 216236992 + Silent SNP C C A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FN1 2335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216245654 216245654 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FN1 2335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216262451 216262451 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FN1 2335 broad.mit.edu;ucsc.edu 37 2 216274775 216274775 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN1 2335 hgsc.bcm.edu;ucsc.edu 37 2 216295547 216295547 + Silent SNP C C T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID FN3K 64122 broad.mit.edu 37 17 80693502 80693502 + 5'UTR DEL C - - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN3K 64122 broad.mit.edu 37 17 80696192 80696193 + Intron INS - G G rs3840055 bycluster;by1000genomes TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN3K 64122 broad.mit.edu 37 17 80696192 80696193 + Intron INS - G G rs3840055 bycluster;by1000genomes TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN3K 64122 broad.mit.edu 37 17 80708644 80708644 + 3'UTR SNP T G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN3K 64122 broad.mit.edu;ucsc.edu 37 17 80706748 80706748 + Silent SNP T C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FN3K 64122 hgsc.bcm.edu;ucsc.edu 37 17 80706807 80706808 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FN3KRP 79672 hgsc.bcm.edu;ucsc.edu 37 17 80680693 80680693 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FNBP1 23048 hgsc.bcm.edu;ucsc.edu 37 9 132741632 132741632 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FNBP1 23048 hgsc.bcm.edu;ucsc.edu 37 9 132757177 132757177 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FNBP1L 54874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93987691 93987691 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNBP1L 54874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93987691 93987691 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNBP4 23360 broad.mit.edu 37 11 47738988 47738988 + Missense_Mutation SNP C A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNBP4 23360 broad.mit.edu 37 11 47738989 47738989 + Missense_Mutation SNP C T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNBP4 23360 broad.mit.edu 37 11 47788664 47788669 + In_Frame_Del DEL GGTGGT - - rs144392734 bycluster;by1000genomes TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 GGTGGT GGTGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNBP4 23360 broad.mit.edu;hgsc.bcm.edu 37 11 47746360 47746360 + Intron SNP A A G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNBP4 23360 hgsc.bcm.edu 37 11 47774573 47774573 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNDC1 84624 broad.mit.edu 37 6 159653887 159653887 + Silent SNP G T T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNDC1 84624 broad.mit.edu 37 6 159659602 159659602 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNDC1 84624 broad.mit.edu 37 6 159692702 159692702 + 3'UTR DEL T - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNDC1 84624 broad.mit.edu 37 6 159692702 159692702 + 3'UTR DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNDC1 84624 broad.mit.edu 37 6 159692702 159692702 + 3'UTR DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNDC1 84624 hgsc.bcm.edu 37 6 159660797 159660797 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNDC3A 22862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 49776041 49776041 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNDC3A 22862 hgsc.bcm.edu;ucsc.edu 37 13 49775997 49775997 + Missense_Mutation SNP A A G rs45604939 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FNDC3B 64778 broad.mit.edu 37 3 172096213 172096213 + Silent SNP C T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNDC3B 64778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 172060897 172060897 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNDC3B 64778 hgsc.bcm.edu;ucsc.edu 37 3 172115178 172115178 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FNDC4 64838 broad.mit.edu;hgsc.bcm.edu 37 2 27716993 27716993 + Silent SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNDC7 163479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109280146 109280146 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP1 96459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131008580 131008580 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP1 96459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131042127 131042127 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP1 96459 hgsc.bcm.edu;ucsc.edu 37 5 131039810 131039810 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FNIP1(dist=150531) 0 broad.mit.edu;hgsc.bcm.edu 37 5 131283287 131283287 + IGR SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159750366 159750366 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159754698 159754698 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159789573 159789573 + Silent SNP G G C rs143166945 by1000genomes;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159790324 159790324 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNIP2 57600 broad.mit.edu;ucsc.edu 37 4 159789371 159789371 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNTB 2342 broad.mit.edu 37 14 65417447 65417447 + Intron DEL A - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNTB 2342 broad.mit.edu 37 14 65417538 65417538 + Intron SNP A T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNTB 2342 broad.mit.edu;hgsc.bcm.edu 37 14 65511120 65511120 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FNTB 2342 broad.mit.edu;ucsc.edu 37 14 65482387 65482387 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FNTB 2342 hgsc.bcm.edu 37 14 65472891 65472891 + Intron SNP T T A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOLH1 2346 broad.mit.edu 37 11 49168304 49168304 + 3'UTR SNP C T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOLH1B 219595 broad.mit.edu;hgsc.bcm.edu 37 11 89429850 89429850 + Missense_Mutation SNP G G C rs141697840 unknown;alternate_allele TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOLH1B 219595 hgsc.bcm.edu 37 11 89424222 89424223 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOLR2 2350 broad.mit.edu 37 11 71927885 71927885 + 5'UTR SNP C T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOLR4 390243 broad.mit.edu;ucsc.edu 37 11 94040428 94040428 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOSB 2354 broad.mit.edu 37 19 45974303 45974303 + Intron SNP T G G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOSB 2354 broad.mit.edu 37 19 45974531 45974531 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOSB 2354 broad.mit.edu 37 19 45976377 45976385 + 3'UTR DEL TGGCCTCCC - - novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 TGGCCTCCC TGGCCTCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOSL2 2355 broad.mit.edu 37 2 28635380 28635380 + 3'UTR SNP C A A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXA2 3170 broad.mit.edu 37 20 22562794 22562794 + Silent SNP C T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXB1 27023 broad.mit.edu;hgsc.bcm.edu 37 15 60297463 60297463 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXC2 2303 broad.mit.edu 37 16 86601069 86601069 + Missense_Mutation SNP G A A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXD1 2297 broad.mit.edu 37 5 72743654 72743654 + Silent SNP C T T rs1052207 unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXD1 2297 hgsc.bcm.edu 37 5 72743761 72743761 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXD4 2298 broad.mit.edu 37 9 118298 118298 + 5'UTR SNP C T T rs2492219 unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXD4 2298 hgsc.bcm.edu 37 9 116848 116849 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4 2298 hgsc.bcm.edu 37 9 117696 117696 + Missense_Mutation SNP G G A rs9406415 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4 2298 hgsc.bcm.edu 37 9 118176 118176 + 5'UTR SNP C C G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L1 200350 broad.mit.edu 37 2 114257620 114257620 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXD4L4 349334 hgsc.bcm.edu 37 9 42719280 42719280 + Frame_Shift_Del DEL C C - rs59364037 unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L4 349334 hgsc.bcm.edu 37 9 42719309 42719311 + In_Frame_Del DEL GCT GCT - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 GCT GCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L4 349334 hgsc.bcm.edu 37 9 70427650 70427652 + In_Frame_Del DEL CAG CAG - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L4 349334 hgsc.bcm.edu 37 9 70427685 70427685 + Frame_Shift_Del DEL G G - rs59364037 unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L4 349334 hgsc.bcm.edu 37 9 70427685 70427685 + Frame_Shift_Del DEL G G - rs59364037 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L5 653427 hgsc.bcm.edu 37 9 70177922 70177923 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXD4L6 653404 broad.mit.edu 37 9 69200146 69200146 + 3'UTR SNP C A A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXF2 2295 broad.mit.edu 37 6 1395205 1395205 + 3'UTR SNP A C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXH1 8928 broad.mit.edu 37 8 145699579 145699579 + 3'UTR SNP G T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXH1 8928 hgsc.bcm.edu;ucsc.edu 37 8 145701057 145701057 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXI2 399823 broad.mit.edu 37 10 129537314 129537314 + 3'UTR DEL G - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXI2 399823 broad.mit.edu;ucsc.edu 37 10 129536797 129536797 + Silent SNP C T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXJ3 22887 broad.mit.edu;hgsc.bcm.edu 37 1 42730816 42730816 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXJ3 22887 hgsc.bcm.edu 37 1 42693624 42693624 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXK1 221937 broad.mit.edu 37 7 4794839 4794839 + Intron SNP C T T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXK1 221937 broad.mit.edu;hgsc.bcm.edu 37 7 4794095 4794095 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXK1 221937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4780487 4780487 + Silent SNP C C T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXK1 221937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4796681 4796681 + Silent SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXK2 3607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80477948 80477948 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXL2 668 broad.mit.edu;hgsc.bcm.edu 37 3 138664421 138664421 + 3'UTR SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXM1 2305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2983386 2983386 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXN1 8456 hgsc.bcm.edu 37 17 26861924 26861924 + Silent SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXN2 3344 hgsc.bcm.edu 37 2 48589863 48589863 + Intron SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXN3 1112 hgsc.bcm.edu 37 14 89878773 89878773 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXN3 1112 hgsc.bcm.edu;ucsc.edu 37 14 89656758 89656758 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXN4 121643 hgsc.bcm.edu;ucsc.edu 37 12 109724492 109724492 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXO1 2308 broad.mit.edu 37 13 41134652 41134652 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXO1 2308 hgsc.bcm.edu 37 13 41133892 41133892 + Missense_Mutation SNP G G T rs150896957 byfrequency;alternate_allele TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXO1 2308 hgsc.bcm.edu 37 13 41134062 41134062 + Silent SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXO3 2309 broad.mit.edu 37 6 108985392 108985392 + Silent SNP A G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXO3 2309 hgsc.bcm.edu 37 6 108985341 108985341 + Silent SNP C C T rs34239018 bycluster TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXO4 4303 broad.mit.edu 37 X 70320778 70320778 + Missense_Mutation SNP G A A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXO4 4303 hgsc.bcm.edu 37 X 70320888 70320888 + Silent SNP C C A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXP1 27086 broad.mit.edu 37 3 71008187 71008187 + 3'UTR DEL T - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP1 27086 broad.mit.edu 37 3 71021129 71021129 + Intron DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114269973 114269973 + Silent SNP A G G rs149757187 unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114269991 114269991 + Silent SNP G A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114330058 114330058 + 3'UTR SNP A T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114330185 114330185 + 3'UTR DEL T - - rs143759073 unknown;alternate_allele TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114330185 114330185 + 3'UTR DEL T - - rs143759073 unknown;alternate_allele TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114330185 114330185 + 3'UTR DEL T - - rs143759073 unknown;alternate_allele TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu 37 7 114330185 114330186 + 3'UTR DEL TT - - rs143759073 unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP2 93986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 114282567 114282567 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXP2 93986 hgsc.bcm.edu 37 7 114268729 114268729 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXP2 93986 hgsc.bcm.edu 37 7 114282645 114282645 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXP2 93986 hgsc.bcm.edu 37 7 114284748 114284748 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXP3 50943 hgsc.bcm.edu 37 X 49113206 49113206 + Splice_Site SNP A A T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXP4 116113 broad.mit.edu 37 6 41569763 41569763 + 3'UTR DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXP4 116113 broad.mit.edu;hgsc.bcm.edu 37 6 41554889 41554889 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXQ1 94234 hgsc.bcm.edu;ucsc.edu 37 6 1313357 1313357 + Silent SNP T T C novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXR1 283150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118849549 118849549 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXR1 283150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118849551 118849551 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXR1 283150 hgsc.bcm.edu;ucsc.edu 37 11 118850320 118850320 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FOXR2 139628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55650703 55650703 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXRED1 55572 broad.mit.edu 37 11 126141134 126141135 + Intron INS - AAGG AAGG rs56266376 bycluster;by1000genomes TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXRED1 55572 broad.mit.edu 37 11 126141134 126141135 + Intron INS - AAGG AAGG rs56266376 bycluster;by1000genomes TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXRED1 55572 broad.mit.edu;hgsc.bcm.edu 37 11 126146919 126146919 + RNA SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXRED1 55572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 126142904 126142904 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXRED1 55572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 126142905 126142905 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXRED2 80020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 36900193 36900193 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXRED2 80020 broad.mit.edu;ucsc.edu 37 22 36894120 36894120 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FOXRED2 80020 hgsc.bcm.edu;ucsc.edu 37 22 36894108 36894108 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FOXS1 2307 broad.mit.edu 37 20 30432839 30432839 + Silent SNP C T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FPGS 2356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130575544 130575544 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FPGS 2356 hgsc.bcm.edu 37 9 130566577 130566577 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FPGT 8790 broad.mit.edu;ucsc.edu 37 1 74670342 74670342 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FPGT-TNNI3K 100526835 broad.mit.edu;hgsc.bcm.edu 37 1 74819043 74819043 + Silent SNP T T A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FPGT-TNNI3K 100526835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 75009648 75009648 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FPR1 2357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52249899 52249899 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FPR2 2358 broad.mit.edu 37 19 52273095 52273095 + 3'UTR DEL T - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FPR3 2359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52327023 52327023 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRAS1 80144 broad.mit.edu 37 4 79432725 79432725 + Intron SNP T G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRAS1 80144 broad.mit.edu;hgsc.bcm.edu 37 4 79296891 79296891 + Splice_Site SNP A A T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79308552 79308552 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79369243 79369243 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79420893 79420893 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79458343 79458343 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FREM1 158326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 14748599 14748599 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM1 158326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 14748627 14748627 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM1 158326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 14823201 14823201 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM1 158326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 14846003 14846003 + Silent SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM1 158326 hgsc.bcm.edu 37 9 14808065 14808066 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM1 158326 hgsc.bcm.edu;ucsc.edu 37 9 14792818 14792818 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FREM1 158326 hgsc.bcm.edu;ucsc.edu 37 9 14859188 14859188 + Silent SNP T T G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39264065 39264065 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39420850 39420850 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39451280 39451280 + Silent SNP T T C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39452971 39452971 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM2 341640 broad.mit.edu;ucsc.edu 37 13 39451341 39451341 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FREM2 341640 hgsc.bcm.edu 37 13 39262990 39262990 + Silent SNP T T C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM2 341640 hgsc.bcm.edu 37 13 39262991 39262991 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FREM2 341640 hgsc.bcm.edu 37 13 39264018 39264018 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FREM2 341640 hgsc.bcm.edu 37 13 39425218 39425218 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FREM2 341640 hgsc.bcm.edu;ucsc.edu 37 13 39265273 39265273 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FREM2 341640 hgsc.bcm.edu;ucsc.edu 37 13 39265788 39265788 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FREM3 166752 hgsc.bcm.edu;ucsc.edu 37 4 144618993 144618993 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRG1 2483 hgsc.bcm.edu 37 4 190876283 190876283 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRG1B 284802 broad.mit.edu 37 20 29623217 29623217 + 5'Flank SNP C T T rs1061649 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29624070 29624070 + Missense_Mutation SNP G A A rs79198850 unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29624093 29624093 + Splice_Site SNP G T T rs75468660 unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29624093 29624093 + Splice_Site SNP G T T rs75468660 unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29632643 29632643 + Intron SNP T C C rs143379667 unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29632643 29632643 + Intron SNP T C C rs143379667 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29632707 29632707 + Intron SNP G A A rs6057187 bycluster;by2hit2allele TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29632707 29632707 + Intron SNP G A A rs6057187 bycluster;by2hit2allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29633992 29633992 + Intron SNP A G G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29652356 29652356 + 3'UTR DEL T - - rs111401906 unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29652921 29652923 + 3'UTR DEL CAA - - rs112777206 unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 CAA CAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29652944 29652945 + 3'UTR DEL AT - - rs148322345 unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29653060 29653060 + 3'UTR DEL C - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29653081 29653082 + 3'UTR INS - G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG1B 284802 broad.mit.edu 37 20 29653853 29653853 + 3'UTR SNP A G G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRG2B 441581 hgsc.bcm.edu 37 10 135440117 135440119 + In_Frame_Del DEL CTT CTT - rs35318550 unknown;alternate_allele TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRG2B 441581 hgsc.bcm.edu 37 10 135440123 135440124 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRG2C 100288801 hgsc.bcm.edu 37 3 75713958 75713958 + Intron SNP C C T rs78181421 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRG2C 100288801 hgsc.bcm.edu 37 3 75713980 75713980 + Intron SNP T T G rs78097733 unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRG2C 100288801 hgsc.bcm.edu 37 3 75714311 75714311 + Intron SNP G G A rs79850029 byfrequency TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRG2C 100288801 hgsc.bcm.edu 37 3 75714806 75714806 + Frame_Shift_Del DEL G G - rs144577984 unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRG2C 100288801 hgsc.bcm.edu 37 3 75715087 75715087 + Intron SNP T T A rs62247961 bycluster;byfrequency TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRG2C 100288801 hgsc.bcm.edu 37 3 75715099 75715099 + Intron SNP T T A rs2118760 bycluster;byfrequency;bysubmitter TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRG2C 100288801 hgsc.bcm.edu 37 3 75715118 75715118 + Intron SNP G G A rs73840339 bycluster;byfrequency TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRK 2444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116288847 116288847 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMD3 257019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 85950490 85950490 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMD4A 55691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13699459 13699459 + Silent SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMD4A 55691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13702514 13702514 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMD4A 55691 hgsc.bcm.edu 37 10 13782507 13782507 + Splice_Region SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMD5 84978 broad.mit.edu 37 15 44168408 44168408 + Intron SNP G A A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRMD6 122786 hgsc.bcm.edu 37 14 52174837 52174837 + Silent SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMD7 90167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 131212433 131212433 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMD7 90167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 131234681 131234681 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMD7 90167 hgsc.bcm.edu 37 X 131261862 131261862 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD1 22844 broad.mit.edu 37 9 37746529 37746529 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRMPD1 22844 broad.mit.edu;ucsc.edu 37 9 37708465 37708465 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRMPD1 22844 broad.mit.edu;ucsc.edu 37 9 37733482 37733482 + Silent SNP A G G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRMPD1 22844 broad.mit.edu;ucsc.edu 37 9 37744613 37744613 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRMPD1 22844 hgsc.bcm.edu 37 9 37729831 37729831 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMPD1 22844 hgsc.bcm.edu 37 9 37740099 37740099 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMPD1 22844 hgsc.bcm.edu;ucsc.edu 37 9 37731077 37731077 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu 37 10 49420020 49420020 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu 37 10 49420021 49420021 + Silent SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49392912 49392912 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49420118 49420118 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49459680 49459680 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD2 143162 hgsc.bcm.edu;ucsc.edu 37 10 49450292 49450292 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMPD4 9758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12734955 12734955 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRMPD4 9758 broad.mit.edu;ucsc.edu 37 X 12736620 12736620 + Silent SNP C A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRMPD4 9758 hgsc.bcm.edu 37 X 12701706 12701706 + Silent SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMPD4 9758 hgsc.bcm.edu 37 X 12734645 12734645 + Nonsense_Mutation SNP C C G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRMPD4 9758 hgsc.bcm.edu;ucsc.edu 37 X 12736245 12736245 + Silent SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID FRMPD4 9758 hgsc.bcm.edu;ucsc.edu 37 X 12736252 12736253 + Frame_Shift_Ins INS - - A rs35659462 unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRRS1 391059 hgsc.bcm.edu;ucsc.edu 37 1 100206440 100206440 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRRS1 391059 hgsc.bcm.edu;ucsc.edu 37 1 100214290 100214290 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRS2 10818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 69965989 69965989 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRS2 10818 hgsc.bcm.edu;ucsc.edu 37 12 69965176 69965176 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRS3 10817 hgsc.bcm.edu 37 6 41740607 41740607 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRY 10129 broad.mit.edu;hgsc.bcm.edu 37 13 32776165 32776165 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRY 10129 broad.mit.edu;hgsc.bcm.edu 37 13 32852733 32852733 + Intron SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRY 10129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32721987 32721987 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRY 10129 broad.mit.edu;ucsc.edu 37 13 32841377 32841377 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRY 10129 hgsc.bcm.edu 37 13 32836597 32836597 + Silent SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRY 10129 hgsc.bcm.edu;ucsc.edu 37 13 32798431 32798431 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRYL 285527 broad.mit.edu 37 4 48501346 48501346 + 3'UTR SNP A T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRYL 285527 broad.mit.edu 37 4 48507685 48507685 + Intron SNP A C C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FRYL 285527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48525026 48525026 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRYL 285527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48566087 48566087 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRYL 285527 hgsc.bcm.edu 37 4 48530033 48530033 + Silent SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRYL 285527 hgsc.bcm.edu;ucsc.edu 37 4 48542918 48542918 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FRZB 2487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183731161 183731161 + Silent SNP G G T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FRZB 2487 hgsc.bcm.edu;ucsc.edu 37 2 183730988 183730988 + Missense_Mutation SNP A A T rs139461108 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FSCB 84075 broad.mit.edu;hgsc.bcm.edu 37 14 44973940 44973940 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FSCB 84075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 44975274 44975274 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSCB 84075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 44975908 44975908 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FSCB 84075 hgsc.bcm.edu 37 14 44973866 44973866 + Silent SNP C C A novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FSCN1 6624 broad.mit.edu 37 7 5643128 5643128 + Missense_Mutation SNP A T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSCN1 6624 broad.mit.edu;hgsc.bcm.edu 37 7 5632742 5632742 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSCN1 6624 broad.mit.edu;hgsc.bcm.edu 37 7 5632985 5632985 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSD1 79187 broad.mit.edu 37 19 4311683 4311683 + Intron DEL A - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSD1 79187 broad.mit.edu 37 19 4311683 4311683 + Intron DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSD1 79187 broad.mit.edu 37 19 4311683 4311683 + Intron DEL A - - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSD1L 83856 broad.mit.edu;ucsc.edu 37 9 108223895 108223895 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSD2 123722 hgsc.bcm.edu 37 15 83438529 83438529 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FSD2 123722 hgsc.bcm.edu;ucsc.edu 37 15 83459735 83459735 + Intron SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSHB 2488 broad.mit.edu 37 11 30255400 30255400 + 3'UTR SNP T A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSHB 2488 hgsc.bcm.edu;ucsc.edu 37 11 30253599 30253599 + Silent SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FSIP1 161835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40068678 40068678 + Silent SNP T T A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSIP1 161835 hgsc.bcm.edu 37 15 40067558 40067558 + Intron SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FSIP1 161835 hgsc.bcm.edu;ucsc.edu 37 15 40063369 40063369 + Intron SNP A A C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FSIP2 401024 broad.mit.edu;hgsc.bcm.edu 37 2 186669998 186669998 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSTL1 11167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 120130797 120130797 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSTL4 23105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132585226 132585226 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSTL4 23105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132736492 132736492 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSTL4 23105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132939626 132939626 + Silent SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FSTL5 56884 broad.mit.edu 37 4 162306769 162306769 + 3'UTR SNP T A A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FSTL5 56884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 162307412 162307412 + Silent SNP G G A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTCD 10841 hgsc.bcm.edu 37 21 47570414 47570414 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FTL 2512 broad.mit.edu;hgsc.bcm.edu 37 19 49468840 49468840 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTL 2512 broad.mit.edu;hgsc.bcm.edu 37 19 49468842 49468842 + Silent SNP G G A rs11553227 unknown;alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTL 2512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49469167 49469167 + Silent SNP C C T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTLP10 100130017 hgsc.bcm.edu;ucsc.edu 37 4 69056948 69056948 + RNA SNP G G C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTMT 94033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 121187839 121187839 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTMT 94033 hgsc.bcm.edu;ucsc.edu 37 5 121188165 121188165 + Missense_Mutation SNP C C A rs180751758 by1000genomes;alternate_allele TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FTO 79068 broad.mit.edu 37 16 54147207 54147207 + 3'UTR DEL G - - rs138104240 bycluster;by1000genomes TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FTO 79068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53878083 53878083 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTSJ2 29960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 2274853 2274853 + Silent SNP T T A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTSJ3 117246 broad.mit.edu 37 17 61904465 61904466 + 5'Flank INS - G G rs28362566 bycluster;by1000genomes TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FTSJ3 117246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61898808 61898808 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTSJ3 117246 hgsc.bcm.edu 37 17 61899416 61899416 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FTSJ3 117246 hgsc.bcm.edu;ucsc.edu 37 17 61903958 61903958 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FTSJD1 55783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71318090 71318090 + Silent SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTSJD1 55783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71318530 71318530 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTSJD1 55783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71319019 71319019 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FTSJD2 23070 broad.mit.edu;ucsc.edu 37 6 37447813 37447813 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FTSJD2 23070 hgsc.bcm.edu 37 6 37429369 37429369 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FUBP1 8880 broad.mit.edu 37 1 78414330 78414330 + 3'UTR SNP G A A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUBP1 8880 broad.mit.edu 37 1 78444764 78444765 + 5'UTR INS - GGCCG GGCCG novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUBP1 8880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78425928 78425928 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUBP3 8939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133485350 133485350 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUCA2 2519 hgsc.bcm.edu;ucsc.edu 37 6 143825091 143825091 + Nonsense_Mutation SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FUK 197258 broad.mit.edu 37 16 70501069 70501069 + Intron DEL C - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUK 197258 broad.mit.edu 37 16 70501069 70501069 + Intron DEL C - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUK 197258 broad.mit.edu 37 16 70508127 70508128 + In_Frame_Ins INS - CCA CCA novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUS 2521 broad.mit.edu 37 16 31202907 31202907 + 3'UTR SNP A G G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUS 2521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31193930 31193930 + Silent SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUS 2521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31193931 31193931 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUS 2521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31201624 31201624 + Silent SNP T T C rs76570520 unknown;alternate_allele TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUS 2521 hgsc.bcm.edu 37 16 31202112 31202112 + Nonsense_Mutation SNP A A T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUS 2521 hgsc.bcm.edu;ucsc.edu 37 16 31202109 31202109 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUS 2521 hgsc.bcm.edu;ucsc.edu 37 16 31202110 31202110 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUS 2521 hgsc.bcm.edu;ucsc.edu 37 16 31202116 31202116 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUT10 84750 hgsc.bcm.edu;ucsc.edu 37 8 33246865 33246865 + Silent SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUT11 170384 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75533416 75533416 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUT1 2523 broad.mit.edu 37 19 49253332 49253332 + 3'UTR SNP C T T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUT1 2523 hgsc.bcm.edu 37 19 49253511 49253511 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FUT2 2524 broad.mit.edu 37 19 49207301 49207301 + 3'UTR SNP C T T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FUT3 2525 hgsc.bcm.edu 37 19 5843822 5843822 + Silent SNP T T C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FUT6 2528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5832203 5832203 + Missense_Mutation SNP G G A rs111589452 byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUT6 2528 hgsc.bcm.edu 37 19 5832160 5832161 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FUT6 2528 hgsc.bcm.edu 37 19 5832160 5832161 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FXR2 9513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7508978 7508978 + Silent SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FXYD1 5348 hgsc.bcm.edu;ucsc.edu 37 19 35632104 35632104 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FXYD2 486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117691415 117691415 + 3'UTR SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FXYD2 486 broad.mit.edu;ucsc.edu 37 11 117691416 117691416 + Intron SNP T G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FXYD3 5349 broad.mit.edu 37 19 35612224 35612224 + Intron SNP T G G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FXYD5 53827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35651641 35651641 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FXYD6 53826 broad.mit.edu 37 11 117710117 117710118 + Intron DEL AC - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FYB 2533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39202090 39202090 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FYB 2533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39202847 39202847 + Silent SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FYB 2533 hgsc.bcm.edu 37 5 39137714 39137714 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FYCO1 79443 hgsc.bcm.edu 37 3 46001032 46001032 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FYCO1 79443 hgsc.bcm.edu 37 3 46009603 46009603 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FYN 2534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111983021 111983021 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq FYN 2534 hgsc.bcm.edu;ucsc.edu 37 6 112017520 112017520 + Silent SNP A A T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID FYTTD1 84248 broad.mit.edu 37 3 197508926 197508926 + 3'UTR DEL A - - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FYTTD1 84248 broad.mit.edu;hgsc.bcm.edu 37 3 197476818 197476818 + 5'UTR SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD10 11211 broad.mit.edu 37 12 130649316 130649317 + 3'UTR INS - T T rs112714527 unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FZD10 11211 broad.mit.edu 37 12 130649317 130649317 + 3'UTR DEL T - - rs112714527 unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FZD10 11211 broad.mit.edu 37 12 130649317 130649317 + 3'UTR DEL T - - rs112714527 unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx FZD10 11211 broad.mit.edu;hgsc.bcm.edu 37 12 130648146 130648146 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD10 11211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130648324 130648324 + Silent SNP C C T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD10 11211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130648663 130648663 + Missense_Mutation SNP C C A rs145130520 unknown;alternate_allele TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD10 11211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130649146 130649146 + Silent SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD1 8321 broad.mit.edu;hgsc.bcm.edu 37 7 90895797 90895797 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD1 8321 hgsc.bcm.edu 37 7 90895381 90895381 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FZD2 2535 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42636502 42636502 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD3 7976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28385020 28385020 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD4 8322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 86662562 86662562 + Silent SNP G G C novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD4 8322 hgsc.bcm.edu 37 11 86662332 86662332 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FZD4 8322 hgsc.bcm.edu 37 11 86662759 86662759 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FZD4 8322 hgsc.bcm.edu;ucsc.edu 37 11 86663464 86663464 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD5 7855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 208632143 208632143 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZD9 8326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72849270 72849270 + Silent SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZR1 51343 broad.mit.edu;hgsc.bcm.edu 37 19 3522955 3522955 + Splice_Site SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZR1 51343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3523035 3523035 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZR1 51343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3533330 3533330 + Silent SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZR1 51343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3533336 3533336 + Silent SNP G G A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq FZR1 51343 hgsc.bcm.edu 37 19 3531748 3531748 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID FZR1 51343 hgsc.bcm.edu 37 19 3532608 3532608 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID G2E3 55632 broad.mit.edu;hgsc.bcm.edu 37 14 31074726 31074726 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G2E3 55632 hgsc.bcm.edu 37 14 31074772 31074772 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G3BP1 10146 broad.mit.edu;hgsc.bcm.edu 37 5 151166157 151166157 + 5'UTR SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G3BP1 10146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 151166245 151166245 + Silent SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G3BP1 10146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 151179550 151179550 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G3BP1 10146 hgsc.bcm.edu;ucsc.edu 37 5 151183616 151183617 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G3BP2 9908 hgsc.bcm.edu;ucsc.edu 37 4 76572287 76572287 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G3BP2 9908 hgsc.bcm.edu;ucsc.edu 37 4 76579235 76579235 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID G6PC 2538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41052960 41052960 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G6PC 2538 hgsc.bcm.edu;ucsc.edu 37 17 41062994 41062995 + Frame_Shift_Del INS - - A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G6PD 2539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153762612 153762612 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq G6PD 2539 hgsc.bcm.edu 37 X 153763534 153763534 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAA 2548 broad.mit.edu;hgsc.bcm.edu 37 17 78090845 78090845 + Silent SNP C C T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAA 2548 broad.mit.edu;hgsc.bcm.edu 37 17 78090863 78090863 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAB1 2549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 144336751 144336751 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAB2 9846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77931466 77931466 + Missense_Mutation SNP C C T rs145573768 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAB3 139716 broad.mit.edu 37 X 153906332 153906332 + 3'UTR SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAB3 139716 broad.mit.edu 37 X 153906344 153906344 + 3'UTR SNP A C C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAB3 139716 broad.mit.edu 37 X 153906394 153906394 + 3'UTR SNP G A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAB3 139716 hgsc.bcm.edu 37 X 153940887 153940887 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAB3 139716 hgsc.bcm.edu 37 X 153940946 153940946 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAB4 128954 broad.mit.edu 37 22 17489072 17489072 + 5'UTR SNP A C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAB4 128954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17449242 17449242 + Silent SNP T T A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAB4 128954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17472966 17472966 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAB4 128954 hgsc.bcm.edu 37 22 17472817 17472817 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAB4 128954 hgsc.bcm.edu;ucsc.edu 37 22 17449278 17449278 + Intron SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABARAPL1 23710 broad.mit.edu 37 12 10365540 10365540 + 5'UTR DEL C - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GABBR1 2550 broad.mit.edu;hgsc.bcm.edu 37 6 29573438 29573438 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABPA 2551 broad.mit.edu 37 21 27141472 27141472 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GABPB1 2553 hgsc.bcm.edu;ucsc.edu 37 15 50596162 50596162 + Splice_Site SNP C C A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABPB2 126626 hgsc.bcm.edu;ucsc.edu 37 1 151079598 151079598 + Silent SNP C C G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA1 2554 broad.mit.edu;hgsc.bcm.edu 37 5 161324440 161324440 + 3'UTR SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA1 2554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161277823 161277823 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA1 2554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161302567 161302567 + Silent SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA3 2556 broad.mit.edu 37 X 151336625 151336625 + 3'UTR SNP G T T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GABRA3 2556 hgsc.bcm.edu;ucsc.edu 37 X 151336969 151336969 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRA3 2556 hgsc.bcm.edu;ucsc.edu 37 X 151376587 151376587 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRA4 2557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 46976378 46976378 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA4 2557 hgsc.bcm.edu 37 4 46930578 46930578 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRA5 2558 broad.mit.edu;hgsc.bcm.edu 37 15 27128585 27128585 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA5 2558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 27193284 27193284 + Silent SNP C C A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRA6(dist=49094) 0 broad.mit.edu;hgsc.bcm.edu 37 5 161178692 161178692 + IGR SNP C C T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRB1 2560 broad.mit.edu;ucsc.edu 37 4 47033947 47033947 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GABRB1 2560 hgsc.bcm.edu;ucsc.edu 37 4 47033727 47033727 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRB1 2560 hgsc.bcm.edu;ucsc.edu 37 4 47408773 47408774 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRB3 2562 hgsc.bcm.edu;ucsc.edu 37 15 26812770 26812770 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRE 2564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151123262 151123262 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRE 2564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151123279 151123279 + Missense_Mutation SNP C C T rs80186670 bycluster;byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRE 2564 hgsc.bcm.edu;ucsc.edu 37 X 151128394 151128395 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRE 2564 hgsc.bcm.edu;ucsc.edu 37 X 151131006 151131006 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRG1 2565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 46043110 46043110 + Silent SNP C C T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRG1 2565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 46060386 46060386 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRG1 2565 hgsc.bcm.edu 37 4 46043264 46043264 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRG2 2566 broad.mit.edu 37 5 161580564 161580564 + 3'UTR SNP C T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GABRG2 2566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161520982 161520982 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRG2 2566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161524855 161524855 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRG2 2566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161580106 161580106 + Missense_Mutation SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRG2 2566 hgsc.bcm.edu;ucsc.edu 37 5 161576189 161576189 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRG3 2567 hgsc.bcm.edu;ucsc.edu 37 15 27772598 27772598 + Silent SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRQ 55879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151815617 151815617 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRQ 55879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151818948 151818948 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRQ 55879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151821523 151821523 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRQ 55879 hgsc.bcm.edu;ucsc.edu 37 X 151808916 151808916 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GABRR1 2569 broad.mit.edu 37 6 89927156 89927156 + 5'UTR DEL A - - rs151288143 bycluster;by1000genomes TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GABRR1 2569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 89891701 89891701 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GABRR1 2569 hgsc.bcm.edu 37 6 89888680 89888680 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAD2 2572 hgsc.bcm.edu;ucsc.edu 37 10 26534856 26534856 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GADD45B 4616 broad.mit.edu 37 19 2477618 2477618 + 3'UTR SNP A T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GADD45B 4616 broad.mit.edu 37 19 2477619 2477619 + 3'UTR SNP A G G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GADD45B 4616 broad.mit.edu;hgsc.bcm.edu 37 19 2476511 2476511 + Intron SNP T T A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GADD45G 10912 hgsc.bcm.edu 37 9 92220937 92220937 + Silent SNP T T C novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GADL1 339896 broad.mit.edu 37 3 30769514 30769515 + 3'UTR INS - T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GADL1 339896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 30769765 30769765 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAGE10 643832 hgsc.bcm.edu 37 X 49173718 49173718 + Silent SNP C C G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAGE10 643832 hgsc.bcm.edu 37 X 49173718 49173718 + Silent SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAGE10 643832 hgsc.bcm.edu 37 X 49173729 49173729 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAGE10 643832 hgsc.bcm.edu 37 X 49173751 49173751 + Silent SNP G G A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAGE10 643832 hgsc.bcm.edu;ucsc.edu 37 X 49173756 49173756 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAGE12J 729396 broad.mit.edu;hgsc.bcm.edu 37 X 49179737 49179737 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAGE2A 729447 broad.mit.edu 37 X 49208295 49208296 + Intron INS - TAT TAT rs33925578 unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAGE2A 729447 broad.mit.edu 37 X 49208295 49208296 + Intron INS - TAT TAT rs33925578 unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAK 2580 broad.mit.edu;ucsc.edu 37 4 843678 843678 + Splice_Site SNP A G G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAK 2580 hgsc.bcm.edu 37 4 860311 860311 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAK 2580 hgsc.bcm.edu 37 4 884397 884397 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAL3ST1 9514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30951966 30951966 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAL3ST1 9514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30952062 30952062 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAL3ST2 64090 broad.mit.edu;hgsc.bcm.edu 37 2 242741353 242741353 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAL3ST3 89792 broad.mit.edu;hgsc.bcm.edu 37 11 65810470 65810470 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAL3ST4 79690 broad.mit.edu 37 7 99764823 99764823 + 5'UTR SNP G A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAL 51083 broad.mit.edu 37 11 68458593 68458593 + 3'UTR DEL T - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAL 51083 broad.mit.edu 37 11 68458593 68458593 + 3'UTR DEL T - - novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAL 51083 broad.mit.edu 37 11 68458593 68458593 + 3'UTR DEL T - - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAL 51083 broad.mit.edu 37 11 68458593 68458593 + 3'UTR DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAL 51083 broad.mit.edu 37 11 68458593 68458593 + 3'UTR DEL T - - novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALC 2581 hgsc.bcm.edu 37 14 88406277 88406277 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALE 2582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24124241 24124241 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALK1 2584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73758818 73758818 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALK2 2585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49611861 49611861 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALM 130589 broad.mit.edu 37 2 38893235 38893235 + 5'UTR SNP G C C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALM 130589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 38903134 38903134 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALM 130589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 38956797 38956797 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALM 130589 hgsc.bcm.edu 37 2 38962222 38962222 + 3'Promoter SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNS 2588 broad.mit.edu 37 16 88893182 88893182 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNS 2588 hgsc.bcm.edu;ucsc.edu 37 16 88908325 88908325 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT10 55568 broad.mit.edu 37 5 153769852 153769853 + Intron INS - C C rs11393509 bycluster;byfrequency;by1000genomes TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT10 55568 broad.mit.edu 37 5 153769852 153769853 + Intron INS - C C rs11393509 bycluster;byfrequency;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT10 55568 broad.mit.edu 37 5 153783470 153783470 + Intron SNP C A A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT10 55568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153755895 153755895 + Silent SNP T T G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT10 55568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153796478 153796478 + Silent SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT10 55568 broad.mit.edu;ucsc.edu 37 5 153709212 153709212 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT11 63917 broad.mit.edu 37 7 151814871 151814871 + Intron DEL G - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT11 63917 broad.mit.edu;hgsc.bcm.edu 37 7 151791383 151791383 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT11 63917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151807716 151807716 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT11 63917 hgsc.bcm.edu 37 7 151818714 151818714 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT1 2589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33272259 33272259 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT13 114805 broad.mit.edu 37 2 155265712 155265712 + Intron SNP C A A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT13 114805 broad.mit.edu 37 2 155307077 155307077 + 3'UTR SNP C A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT13 114805 broad.mit.edu 37 2 155307077 155307077 + 3'UTR SNP C A A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT13 114805 broad.mit.edu 37 2 155309867 155309868 + 3'UTR DEL CA - - rs141411736 bycluster;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT13 114805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155099221 155099221 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT13 114805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155295210 155295210 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT13 114805 broad.mit.edu;ucsc.edu 37 2 155115568 155115568 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT14 79623 hgsc.bcm.edu;ucsc.edu 37 2 31165110 31165110 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT2 2590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230398728 230398728 + Silent SNP T T A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT2 2590 hgsc.bcm.edu;ucsc.edu 37 1 230338993 230338993 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT2 2590 hgsc.bcm.edu;ucsc.edu 37 1 230410256 230410256 + Silent SNP G G C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT3 2591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166611170 166611170 + Silent SNP A A T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158114785 158114785 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158115425 158115425 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158165091 158165091 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158167827 158167827 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT5 11227 hgsc.bcm.edu;ucsc.edu 37 2 158114714 158114714 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT6 11226 hgsc.bcm.edu;ucsc.edu 37 12 51751134 51751134 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT6 11226 hgsc.bcm.edu;ucsc.edu 37 12 51758021 51758021 + Silent SNP G G C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT7 51809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 174219381 174219381 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT7 51809 broad.mit.edu;ucsc.edu 37 4 174216550 174216550 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNT7 51809 hgsc.bcm.edu 37 4 174219388 174219388 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT7 51809 hgsc.bcm.edu 37 4 174223217 174223217 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALNT7 51809 hgsc.bcm.edu;ucsc.edu 37 4 174090012 174090013 + Frame_Shift_Ins INS - - AA novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNT9 50614 broad.mit.edu 37 12 132682466 132682466 + Frame_Shift_Del DEL C - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNTL2 117248 broad.mit.edu;ucsc.edu 37 3 16237362 16237362 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALNTL4 374378 hgsc.bcm.edu;ucsc.edu 37 11 11470318 11470318 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNTL5 168391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151684265 151684265 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALNTL5 168391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151684336 151684336 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALP 85569 hgsc.bcm.edu 37 19 56693586 56693586 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GALR1 2587 broad.mit.edu 37 18 74980933 74980933 + 3'UTR SNP T C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALR1 2587 broad.mit.edu;ucsc.edu 37 18 74962847 74962847 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GALT 2592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34649524 34649524 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GALT 2592 broad.mit.edu;ucsc.edu 37 9 34648884 34648884 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAMT 2593 broad.mit.edu;hgsc.bcm.edu 37 19 1398924 1398924 + Silent SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAMT 2593 hgsc.bcm.edu 37 19 1397347 1397347 + 3'UTR SNP G G A rs149268921 by1000genomes TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAMT 2593 hgsc.bcm.edu;ucsc.edu 37 19 1399116 1399116 + Intron SNP G G C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAN 8139 hgsc.bcm.edu;ucsc.edu 37 16 81398605 81398605 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAN 8139 hgsc.bcm.edu;ucsc.edu 37 16 81411067 81411067 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GANAB 23193 broad.mit.edu;ucsc.edu 37 11 62396249 62396249 + Silent SNP A G G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GANC 2595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42632072 42632072 + Silent SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GANC 2595 hgsc.bcm.edu;ucsc.edu 37 15 42585003 42585003 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAP43 2596 broad.mit.edu 37 3 115439895 115439895 + 3'UTR DEL A - - novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAP43 2596 broad.mit.edu;hgsc.bcm.edu 37 3 115395305 115395305 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAP43 2596 broad.mit.edu;ucsc.edu 37 3 115394971 115394971 + Missense_Mutation SNP A G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAPDHS 26330 broad.mit.edu 37 19 36036175 36036175 + 3'UTR SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAPDHS 26330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36029250 36029250 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAPVD1 26130 broad.mit.edu;hgsc.bcm.edu 37 9 128109084 128109084 + Intron SNP C C T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAPVD1 26130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 128099711 128099711 + Silent SNP A A T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAPVD1 26130 hgsc.bcm.edu 37 9 128086083 128086083 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAPVD1 26130 hgsc.bcm.edu;ucsc.edu 37 9 128069788 128069788 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAR1 54433 broad.mit.edu;ucsc.edu 37 4 110737330 110737330 + Nonsense_Mutation SNP C T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GART 2618 hgsc.bcm.edu 37 21 34882122 34882122 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAS2 2620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22707336 22707336 + Splice_Site SNP G G C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAS2 2620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22833447 22833447 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAS2L2 246176 hgsc.bcm.edu 37 17 34071950 34071950 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GAS2L2 246176 hgsc.bcm.edu 37 17 34077126 34077134 + In_Frame_Del DEL CTGGCGCCT CTGGCGCCT - novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 CTGGCGCCT CTGGCGCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAS2L3 283431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 101017385 101017385 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAS5 60674 broad.mit.edu 37 1 173834333 173834333 + Intron DEL A - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAS5 60674 broad.mit.edu 37 1 173835706 173835706 + Splice_Site SNP C A A rs112023202 bycluster TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAS6 2621 broad.mit.edu 37 13 114538718 114538719 + Intron DEL CT - - rs71105205 unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAS6 2621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114549554 114549554 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAS7 8522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 9873005 9873005 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GAS8 2622 broad.mit.edu 37 16 90099333 90099333 + Splice_Site SNP G A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GAS8 2622 hgsc.bcm.edu;ucsc.edu 37 16 90104179 90104179 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATA1 2623 hgsc.bcm.edu 37 X 48649553 48649553 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATA1 2623 hgsc.bcm.edu 37 X 48652583 48652583 + 3'UTR SNP A A G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GATA2 2624 broad.mit.edu 37 3 128199926 128199926 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATA2 2624 broad.mit.edu 37 3 128205185 128205185 + Frame_Shift_Del DEL G - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATA2 2624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128200752 128200753 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GATA2 2624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128204803 128204803 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GATA2 2624 hgsc.bcm.edu 37 3 128204641 128204641 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATA3 2625 hgsc.bcm.edu;ucsc.edu 37 10 8115905 8115905 + Silent SNP C C T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID GATA4 2626 broad.mit.edu;ucsc.edu 37 8 11615820 11615820 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATA5 140628 broad.mit.edu 37 20 61041502 61041502 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATA5 140628 hgsc.bcm.edu 37 20 61040459 61040459 + Silent SNP G G A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATAD1 57798 broad.mit.edu 37 7 92085934 92085934 + 3'UTR SNP A G G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATAD2A 54815 broad.mit.edu 37 19 19609406 19609406 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATAD2A 54815 hgsc.bcm.edu 37 19 19616156 19616156 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATAD2B 57459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153782691 153782691 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GATC 283459 hgsc.bcm.edu 37 12 120884306 120884307 + Frame_Shift_Ins INS - - G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GATM 2628 broad.mit.edu 37 15 45654249 45654249 + 3'UTR SNP C A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GATM 2628 hgsc.bcm.edu 37 15 45654318 45654318 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATM 2628 hgsc.bcm.edu;ucsc.edu 37 15 45654362 45654362 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GATSL3 652968 broad.mit.edu 37 22 30682432 30682432 + Intron SNP G T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBA2 57704 broad.mit.edu 37 9 35749945 35749946 + 5'Flank INS - CC CC novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBA2 57704 broad.mit.edu 37 9 35749945 35749946 + 5'Flank INS - CC CC novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBA2 57704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35738346 35738346 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBA2 57704 hgsc.bcm.edu;ucsc.edu 37 9 35738047 35738047 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBA2 57704 hgsc.bcm.edu;ucsc.edu 37 9 35738845 35738845 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBA2 57704 hgsc.bcm.edu;ucsc.edu 37 9 35740010 35740010 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBA2 57704 hgsc.bcm.edu;ucsc.edu 37 9 35748456 35748456 + Silent SNP A A T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBA 2629 broad.mit.edu 37 1 155205493 155205493 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBA 2629 broad.mit.edu 37 1 155207294 155207294 + Silent SNP C T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBA 2629 broad.mit.edu;hgsc.bcm.edu 37 1 155205090 155205090 + Silent SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBA 2629 hgsc.bcm.edu 37 1 155209553 155209553 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBA3 57733 broad.mit.edu;hgsc.bcm.edu 37 4 22749618 22749618 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBA3 57733 broad.mit.edu;hgsc.bcm.edu 37 4 22820365 22820365 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBAP1 2630 broad.mit.edu 37 1 155188758 155188758 + 5'UTR SNP A C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBAP1 2630 broad.mit.edu 37 1 155188758 155188758 + 5'UTR SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBAP1 2630 broad.mit.edu 37 1 155188758 155188758 + 5'UTR SNP A C C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBE1 2632 hgsc.bcm.edu;ucsc.edu 37 3 81635323 81635323 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBF1 8729 broad.mit.edu 37 10 104119230 104119230 + Intron SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBF1 8729 broad.mit.edu 37 10 104142165 104142165 + 3'UTR SNP C T T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104111114 104111114 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104111129 104111129 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104126846 104126846 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104129688 104129688 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBF1 8729 broad.mit.edu;ucsc.edu 37 10 104121490 104121490 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBF1 8729 hgsc.bcm.edu 37 10 104136037 104136037 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBF1 8729 hgsc.bcm.edu;ucsc.edu 37 10 104118423 104118423 + Silent SNP G G T rs142955445 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBGT1 26301 broad.mit.edu;hgsc.bcm.edu 37 9 136029453 136029453 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBGT1 26301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136029294 136029294 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBP1 2633 broad.mit.edu 37 1 89518865 89518866 + 3'UTR INS - T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBP1 2633 broad.mit.edu 37 1 89518866 89518866 + 3'UTR DEL T - - novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBP1 2633 broad.mit.edu 37 1 89518866 89518866 + 3'UTR DEL T - - novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBP1 2633 broad.mit.edu;hgsc.bcm.edu 37 1 89525013 89525013 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBP1 2633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89523725 89523725 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBP2 2634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89582840 89582840 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBP4 115361 hgsc.bcm.edu;ucsc.edu 37 1 89656967 89656967 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBP5 115362 broad.mit.edu 37 1 89726279 89726279 + 3'UTR SNP T C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBP5 115362 hgsc.bcm.edu;ucsc.edu 37 1 89732723 89732723 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GBP6 163351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89847441 89847441 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBP7 388646 hgsc.bcm.edu;ucsc.edu 37 1 89615167 89615168 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GBX2 2637 broad.mit.edu 37 2 237076138 237076138 + Silent SNP G A A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GBX2 2637 broad.mit.edu 37 2 237076427 237076435 + In_Frame_Del DEL GGCGGCGGC - - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 GGCGGCGGC GGCGGCGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GC 2638 broad.mit.edu 37 4 72649774 72649774 + 5'UTR SNP G A A rs3733359 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCA 25801 hgsc.bcm.edu;ucsc.edu 37 2 163204196 163204196 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC1 79571 broad.mit.edu;hgsc.bcm.edu 37 7 127225152 127225152 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GCC1 79571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127222351 127222351 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC1 79571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127224747 127224747 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC2 9648 broad.mit.edu;hgsc.bcm.edu 37 2 109113518 109113518 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC2 9648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109099526 109099526 + Silent SNP C C T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC2 9648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109100625 109100625 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC2 9648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109100728 109100728 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC2 9648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109103098 109103098 + Silent SNP T T A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCC2 9648 hgsc.bcm.edu;ucsc.edu 37 2 109104197 109104197 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCFC1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34117899 34117899 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCFC1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34120909 34120909 + Silent SNP T T C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCFC1 0 broad.mit.edu 37 21 34143766 34143766 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCFC1 0 broad.mit.edu 37 21 34143767 34143767 + Silent SNP G A A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCFC1 0 broad.mit.edu;ucsc.edu 37 21 34142136 34142136 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCGR 2642 hgsc.bcm.edu;ucsc.edu 37 17 79770111 79770111 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GCKR 2646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27719812 27719812 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCKR 2646 hgsc.bcm.edu 37 2 27730176 27730176 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GCLM 2730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94370100 94370100 + Silent SNP T T C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCM1 8521 broad.mit.edu 37 6 52992826 52992827 + 3'UTR INS - AAAAAAAA AAAAAAAA rs71726666 unknown;alternate_allele TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCM1 8521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52993017 52993017 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCM1 8521 hgsc.bcm.edu 37 6 52995691 52995691 + Missense_Mutation SNP C C G rs76623467 byfrequency;by1000genomes;alternate_allele TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GCN1L1 10985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120582805 120582805 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCN1L1 10985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120586152 120586152 + Splice_Site SNP T T C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCN1L1 10985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120622633 120622633 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCN1L1 10985 broad.mit.edu;ucsc.edu 37 12 120574466 120574466 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCNT1 2650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79117316 79117316 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT1 2650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79118095 79118095 + Silent SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT1 2650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79118325 79118325 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT2 2651 broad.mit.edu 37 6 10530192 10530192 + Intron DEL A - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GCNT2 2651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10529342 10529342 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT2 2651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10529526 10529526 + Silent SNP C C T rs151060330 unknown;alternate_allele TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT2 2651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10586869 10586869 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT2 2651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10621587 10621587 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT2 2651 hgsc.bcm.edu;ucsc.edu 37 6 10557023 10557023 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GCNT3 9245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59910566 59910566 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCNT4 51301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 74325838 74325838 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCOM1 145781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57913819 57913819 + Missense_Mutation SNP T T C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GCSH 2653 broad.mit.edu;hgsc.bcm.edu 37 16 81118200 81118200 + Splice_Site SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDA 9615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 74863196 74863196 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDA 9615 hgsc.bcm.edu 37 9 74834367 74834367 + Intron SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GDAP1L1 78997 hgsc.bcm.edu 37 20 42876070 42876070 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDAP2 54834 broad.mit.edu 37 1 118411745 118411746 + 3'UTR DEL TT - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDAP2 54834 broad.mit.edu;ucsc.edu 37 1 118426150 118426150 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDAP2 54834 hgsc.bcm.edu 37 1 118462880 118462880 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GDF10 2662 broad.mit.edu 37 10 48429220 48429220 + Silent SNP G A A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDF10 2662 hgsc.bcm.edu;ucsc.edu 37 10 48428675 48428675 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GDF11 10220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56142619 56142619 + Nonsense_Mutation SNP C C G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDF1 2657 broad.mit.edu 37 19 18990120 18990122 + In_Frame_Del DEL TCA - - novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 TCA TCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDF15 9518 broad.mit.edu;hgsc.bcm.edu 37 19 18499472 18499472 + Silent SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDF15 9518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18497194 18497194 + Silent SNP C C A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDF3 9573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7842617 7842617 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GDF3 9573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7842665 7842665 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDF3 9573 hgsc.bcm.edu 37 12 7843115 7843115 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GDF5 8200 broad.mit.edu;hgsc.bcm.edu 37 20 34021690 34021690 + 3'UTR SNP A A C novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDF5 8200 broad.mit.edu;ucsc.edu 37 20 34021789 34021789 + Missense_Mutation SNP C T T rs121909347 unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDF6 392255 broad.mit.edu 37 8 97172667 97172668 + Frame_Shift_Ins INS - A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDF9 2661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132197841 132197841 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDI1 2664 broad.mit.edu 37 X 153669611 153669611 + Intron SNP G A A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDPD1 284161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57334552 57334552 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GDPD4 220032 hgsc.bcm.edu;ucsc.edu 37 11 76969447 76969447 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GDPD5 81544 broad.mit.edu 37 11 75160647 75160647 + Silent SNP C T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GDPD5 81544 hgsc.bcm.edu 37 11 75188686 75188686 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GEFT 0 broad.mit.edu 37 12 58007969 58007969 + Intron SNP A C C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GEFT 0 hgsc.bcm.edu;ucsc.edu 37 12 58008143 58008143 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GEMC1 0 hgsc.bcm.edu 37 3 190573441 190573441 + 5'UTR SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GEMIN4 50628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 649272 649272 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEMIN4 50628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 649388 649388 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEMIN5 25929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154270986 154270986 + Silent SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEMIN5 25929 hgsc.bcm.edu;ucsc.edu 37 5 154271054 154271054 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GEMIN5 25929 hgsc.bcm.edu;ucsc.edu 37 5 154278063 154278063 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GEMIN5 25929 hgsc.bcm.edu;ucsc.edu 37 5 154287300 154287300 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEMIN6 79833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39008932 39008932 + Silent SNP T T G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEMIN7 79760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45593483 45593483 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEMIN8 54960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 14038611 14038611 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GEN1 348654 hgsc.bcm.edu 37 2 17946312 17946312 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GET4 51608 broad.mit.edu 37 7 935755 935755 + 3'UTR DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GET4 51608 hgsc.bcm.edu 37 7 925701 925701 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFER 2671 hgsc.bcm.edu 37 16 2035868 2035868 + Silent SNP C C T rs1046502 bycluster;byfrequency;by1000genomes TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFI1 2672 hgsc.bcm.edu;ucsc.edu 37 1 92944149 92944149 + Silent SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFI1B 8328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135863634 135863634 + Missense_Mutation SNP G G T rs145562579 unknown;alternate_allele TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFM2 84340 hgsc.bcm.edu 37 5 74021847 74021852 + In_Frame_Del DEL ACTCAA ACTCAA - rs5868753 bycluster;by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 ACTCAA ACTCAA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFM2 84340 hgsc.bcm.edu 37 5 74021852 74021852 + Missense_Mutation SNP A A T rs76339998 bycluster;byfrequency TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFM2 84340 hgsc.bcm.edu 37 5 74021853 74021853 + Missense_Mutation SNP A A T rs141759476 byfrequency TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFOD1 54438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 13365468 13365468 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFOD1 54438 hgsc.bcm.edu;ucsc.edu 37 6 13470134 13470134 + 3'UTR SNP G G C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFPT1 2673 hgsc.bcm.edu;ucsc.edu 37 2 69565625 69565625 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFPT2 9945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179745870 179745870 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFRA2 2675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 21563505 21563505 + Silent SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFRA2 2675 hgsc.bcm.edu 37 8 21560322 21560322 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GFRA3 2676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137593484 137593484 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GFRA4 64096 broad.mit.edu 37 20 3641432 3641432 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GFRAL 389400 broad.mit.edu 37 6 55266896 55266896 + 3'UTR DEL T - - rs149724080 bycluster;by1000genomes TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GFRAL 389400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 55214903 55214903 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGA1 26088 broad.mit.edu;hgsc.bcm.edu 37 22 38010280 38010280 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGA1 26088 hgsc.bcm.edu 37 22 38027029 38027029 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GGA2 23062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 23494281 23494281 + Silent SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGA2 23062 hgsc.bcm.edu;ucsc.edu 37 16 23481417 23481417 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGA3 23163 hgsc.bcm.edu 37 17 73235514 73235514 + Silent SNP C C G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GGCT 79017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 30538534 30538534 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGN 199720 broad.mit.edu 37 19 38876474 38876474 + Silent SNP C T T rs183192050 by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGN 199720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38876071 38876071 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGNBP2 79893 broad.mit.edu 37 17 34901611 34901611 + Missense_Mutation SNP A G G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGNBP2 79893 broad.mit.edu 37 17 34942076 34942076 + Intron SNP A G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGNBP2 79893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34935726 34935726 + Silent SNP G G T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGNBP2 79893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34943427 34943427 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGNBP2 79893 hgsc.bcm.edu;ucsc.edu 37 17 34913158 34913158 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGNBP2 79893 hgsc.bcm.edu;ucsc.edu 37 17 34945653 34945653 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GGT1 2678 broad.mit.edu 37 22 25007058 25007058 + Nonsense_Mutation SNP A T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT1 2678 broad.mit.edu 37 22 25024856 25024856 + 3'UTR SNP C T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT1 2678 broad.mit.edu;hgsc.bcm.edu 37 22 25010806 25010806 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGT1 2678 hgsc.bcm.edu 37 22 25007113 25007113 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGT3P 2679 broad.mit.edu 37 22 18769145 18769145 + Intron SNP G A A rs4532044 unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT3P 2679 broad.mit.edu 37 22 18769145 18769145 + Intron SNP G A A rs4532044 unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT3P 2679 broad.mit.edu 37 22 18769145 18769145 + Intron SNP G A A rs4532044 unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT3P 2679 broad.mit.edu 37 22 18775275 18775275 + Intron SNP G A A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT3P 2679 broad.mit.edu 37 22 18778601 18778601 + RNA SNP C T T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT3P 2679 broad.mit.edu 37 22 18778601 18778601 + RNA SNP C T T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT5 2687 broad.mit.edu 37 22 24621029 24621029 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT5 2687 broad.mit.edu;ucsc.edu 37 22 24627459 24627459 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGT7 2686 broad.mit.edu;hgsc.bcm.edu 37 20 33433135 33433135 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGT7 2686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33437795 33437795 + Silent SNP C C T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGT7 2686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33447323 33447323 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGT7 2686 hgsc.bcm.edu 37 20 33437824 33437824 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GGT7 2686 hgsc.bcm.edu;ucsc.edu 37 20 33450696 33450696 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GGT8P 645367 broad.mit.edu 37 2 91968965 91968965 + RNA SNP T G G rs4143481 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GGTLC1 92086 broad.mit.edu;hgsc.bcm.edu 37 20 23966339 23966339 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGTLC2 91227 hgsc.bcm.edu 37 22 22989281 22989281 + Silent SNP T T C rs3966363 bycluster;byfrequency;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GGTLC2(dist=39350) 0 hgsc.bcm.edu 37 22 23029718 23029718 + IGR SNP A A T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GGTLC2(dist=50342) 0 hgsc.bcm.edu 37 22 23040710 23040710 + IGR SNP T T A rs61749286 byfrequency TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GH2 2689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61958132 61958132 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GHDC 84514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40342212 40342212 + Silent SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GHR 2690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 42719044 42719044 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GHRH 2691 hgsc.bcm.edu 37 20 35879593 35879593 + 3'UTR SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GHRH 2691 hgsc.bcm.edu;ucsc.edu 37 20 35882647 35882647 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIF 2694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59611470 59611470 + Silent SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIF 2694 hgsc.bcm.edu 37 11 59610539 59610539 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIGYF1 64599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100281055 100281055 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIGYF1 64599 hgsc.bcm.edu 37 7 100282980 100282980 + Silent SNP G G A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIGYF1 64599 hgsc.bcm.edu 37 7 100285169 100285170 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIGYF2 26058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233677188 233677188 + Silent SNP T T C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIGYF2 26058 hgsc.bcm.edu 37 2 233697652 233697652 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIGYF2 26058 hgsc.bcm.edu;ucsc.edu 37 2 233680350 233680350 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIGYF2 26058 hgsc.bcm.edu;ucsc.edu 37 2 233708765 233708767 + In_Frame_Del DEL CAG CAG - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP2 26157 broad.mit.edu 37 7 150390508 150390508 + 3'UTR SNP A G G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GIMAP2 26157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150389838 150389838 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP2 26157 hgsc.bcm.edu;ucsc.edu 37 7 150384135 150384135 + Intron SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP2 26157 hgsc.bcm.edu;ucsc.edu 37 7 150390179 150390179 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIMAP4 55303 broad.mit.edu;hgsc.bcm.edu 37 7 150270155 150270155 + 3'UTR SNP T T C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP6 474344 broad.mit.edu 37 7 150324711 150324711 + 3'UTR SNP C A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GIMAP6 474344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150325294 150325294 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP8 155038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150164190 150164190 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP8 155038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150171609 150171609 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP8 155038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150174244 150174244 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIMAP8 155038 hgsc.bcm.edu;ucsc.edu 37 7 150174278 150174278 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GINS3 64785 hgsc.bcm.edu 37 16 58437163 58437163 + Silent SNP C C T rs186469314 unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GINS3 64785 hgsc.bcm.edu 37 16 58437164 58437165 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GINS3 64785 hgsc.bcm.edu 37 16 58438630 58438630 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIP 2695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 47036046 47036046 + 3'UTR SNP T T C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIPC1 10755 hgsc.bcm.edu 37 19 14591229 14591229 + Silent SNP A A G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIPC2 54810 broad.mit.edu 37 1 78601512 78601512 + 3'UTR SNP A G G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GIPC2 54810 hgsc.bcm.edu 37 1 78601425 78601425 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIPC3 126326 broad.mit.edu 37 19 3590339 3590340 + 3'UTR DEL TC - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GIPC3 126326 broad.mit.edu;hgsc.bcm.edu 37 19 3586520 3586520 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIPR 2696 broad.mit.edu 37 19 46185190 46185190 + Silent SNP C T T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GIPR 2696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46174612 46174612 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GIT1 28964 hgsc.bcm.edu 37 17 27902652 27902652 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIT1 28964 hgsc.bcm.edu 37 17 27902653 27902656 + Frame_Shift_Del DEL CAGT CAGT - novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 CAGT CAGT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIT1 28964 hgsc.bcm.edu;ucsc.edu 37 17 27902334 27902334 + Silent SNP G G T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GIT2 9815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110421492 110421492 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA10 84694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90604723 90604723 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA10 84694 hgsc.bcm.edu 37 6 90604514 90604514 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA1 2697 broad.mit.edu 37 6 121769154 121769154 + 3'UTR SNP A C C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GJA1 2697 hgsc.bcm.edu 37 6 121768925 121768925 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA1 2697 hgsc.bcm.edu 37 6 121768925 121768925 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA3 2700 broad.mit.edu 37 13 20717063 20717063 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GJA4 2701 hgsc.bcm.edu 37 1 35259857 35259857 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GJA5 2702 broad.mit.edu 37 1 147228835 147228836 + 3'UTR DEL CA - - rs138622477 bycluster;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GJA5 2702 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147230622 147230622 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA5 2702 hgsc.bcm.edu;ucsc.edu 37 1 147231205 147231205 + Nonsense_Mutation SNP C C A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA5 2702 hgsc.bcm.edu;ucsc.edu 37 1 147231208 147231208 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA8 2703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147380712 147380712 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJA8 2703 hgsc.bcm.edu 37 1 147380453 147380453 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GJA9 81025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39340771 39340771 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJB1 2705 hgsc.bcm.edu 37 X 70444041 70444041 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GJB3 2707 broad.mit.edu 37 1 35251229 35251229 + 3'UTR SNP G C C rs476220 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GJB3 2707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35250435 35250435 + Nonsense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJB3 2707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35250612 35250612 + Silent SNP C C T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJB4 127534 broad.mit.edu;hgsc.bcm.edu 37 1 35227533 35227533 + Silent SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJB4 127534 hgsc.bcm.edu;ucsc.edu 37 1 35226981 35226981 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GJB6 10804 broad.mit.edu;hgsc.bcm.edu 37 13 20797320 20797320 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJB6 10804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20797015 20797015 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJC1 10052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42882647 42882647 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GJC2 57165 broad.mit.edu 37 1 228346349 228346349 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GJD2 57369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35045023 35045023 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GK2 2712 hgsc.bcm.edu 37 4 80328113 80328113 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GK 2710 hgsc.bcm.edu 37 X 30726161 30726161 + Intron SNP T T A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GKN2 200504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 69177365 69177365 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33038793 33038793 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33087643 33087643 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33093265 33093265 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33114174 33114174 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1L2 89944 broad.mit.edu 37 11 134236992 134236992 + Intron DEL C - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLB1L2 89944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134240284 134240284 + Silent SNP C C T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1L2 89944 hgsc.bcm.edu 37 11 134217318 134217318 + Silent SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLB1L3 112937 broad.mit.edu 37 11 134147161 134147161 + Intron SNP C T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLB1L3 112937 broad.mit.edu 37 11 134188869 134188869 + 3'UTR SNP G T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLB1L3 112937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134188593 134188593 + Silent SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1L3 112937 hgsc.bcm.edu 37 11 134147736 134147736 + Silent SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLB1L 79411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220101846 220101846 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLB1L 79411 hgsc.bcm.edu 37 2 220102299 220102299 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLCCI1 113263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 8126006 8126006 + Silent SNP T T G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLCE 26035 broad.mit.edu 37 15 69564169 69564169 + 3'UTR DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLCE 26035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 69561171 69561171 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLCE 26035 hgsc.bcm.edu 37 15 69561195 69561195 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLDC 2731 hgsc.bcm.edu 37 9 6536219 6536219 + Missense_Mutation SNP T T C rs141152043 byfrequency TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLDN 342035 broad.mit.edu 37 15 51698140 51698140 + 3'UTR DEL A - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLDN 342035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51692438 51692438 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLDN 342035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51696755 51696755 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLE1 2733 hgsc.bcm.edu 37 9 131267089 131267089 + Missense_Mutation SNP C C G rs150246404 byfrequency TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLG1 2734 broad.mit.edu 37 16 74486706 74486706 + 3'UTR DEL T - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLG1 2734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 74524933 74524933 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLG1 2734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 74530491 74530491 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GLG1 2734 hgsc.bcm.edu;ucsc.edu 37 16 74506246 74506246 + Splice_Site SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLG1 2734 hgsc.bcm.edu;ucsc.edu 37 16 74506300 74506300 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLI1 2735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57861144 57861144 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLI1 2735 hgsc.bcm.edu 37 12 57865037 57865037 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLI1 2735 hgsc.bcm.edu 37 12 57865608 57865608 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLI2 2736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 121742131 121742131 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLI2 2736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 121747767 121747767 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLI2 2736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 121748151 121748151 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLI2 2736 hgsc.bcm.edu 37 2 121708840 121708840 + Silent SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLI2 2736 hgsc.bcm.edu;ucsc.edu 37 2 121685023 121685026 + Frame_Shift_Del DEL TCTG TCTG - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 TCTG TCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLI3 2737 broad.mit.edu;hgsc.bcm.edu 37 7 42006052 42006052 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GLI3 2737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42003966 42003966 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GLI3 2737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42116424 42116424 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLIPR1L1 256710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 75737689 75737689 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLIPR1L2 144321 hgsc.bcm.edu 37 12 75816814 75816815 + In_Frame_Ins INS - - ACA novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLIPR1L2 144321 hgsc.bcm.edu 37 12 75816814 75816815 + In_Frame_Ins INS - - ACA novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLIPR2 152007 broad.mit.edu 37 9 36163196 36163198 + 3'UTR DEL ACC - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 ACC ACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLIS1 148979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53972295 53972295 + Silent SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLP1R 2740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39025301 39025301 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLP2R 9340 hgsc.bcm.edu 37 17 9737136 9737136 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLP2R 9340 hgsc.bcm.edu;ucsc.edu 37 17 9745863 9745863 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLP2R 9340 hgsc.bcm.edu;ucsc.edu 37 17 9791296 9791296 + Splice_Region SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLRA1 2741 hgsc.bcm.edu 37 5 151208500 151208500 + Silent SNP C C T rs75463357 bycluster;byfrequency;by1000genomes TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLRA2 2742 broad.mit.edu;ucsc.edu 37 X 14748581 14748581 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLRA3 8001 broad.mit.edu;ucsc.edu 37 4 175649781 175649781 + Silent SNP A G G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLRB 2743 hgsc.bcm.edu;ucsc.edu 37 4 158043499 158043499 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLS2 27165 broad.mit.edu 37 12 56865561 56865561 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLS2 27165 broad.mit.edu 37 12 56881366 56881366 + Intron DEL A - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLS2 27165 hgsc.bcm.edu 37 12 56865905 56865905 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLS2 27165 hgsc.bcm.edu;ucsc.edu 37 12 56867108 56867108 + Intron SNP G G T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLS 2744 broad.mit.edu 37 2 191785692 191785692 + Intron SNP G T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLS 2744 broad.mit.edu;hgsc.bcm.edu 37 2 191797463 191797463 + Intron SNP T T A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLS 2744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191792206 191792206 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLS 2744 hgsc.bcm.edu 37 2 191792046 191792046 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLS 2744 hgsc.bcm.edu;ucsc.edu 37 2 191759912 191759912 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLS 2744 hgsc.bcm.edu;ucsc.edu 37 2 191796274 191796274 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLT8D1 55830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52729443 52729443 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLT8D1 55830 hgsc.bcm.edu 37 3 52730619 52730619 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLT8D2 83468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104387219 104387219 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLT8D2 83468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104390596 104390596 + Silent SNP A A G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLT8D2 83468 hgsc.bcm.edu 37 12 104387233 104387233 + Missense_Mutation SNP T T C rs145520946 bycluster;byfrequency;by1000genomes TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLT8D2 83468 hgsc.bcm.edu 37 12 104387250 104387250 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLTP 51228 broad.mit.edu 37 12 110290311 110290311 + 3'UTR SNP G C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLTPD1 80772 hgsc.bcm.edu;ucsc.edu 37 1 1262701 1262701 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLTSCR1 29998 broad.mit.edu;hgsc.bcm.edu 37 19 48198183 48198183 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLTSCR2 29997 broad.mit.edu 37 19 48258011 48258011 + Missense_Mutation SNP G A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLTSCR2 29997 broad.mit.edu 37 19 48260339 48260339 + 3'UTR SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLTSCR2 29997 hgsc.bcm.edu 37 19 48260295 48260295 + 3'UTR SNP T T A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLUD1 2746 broad.mit.edu 37 10 88811194 88811194 + 3'UTR DEL T - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLYAT 10249 broad.mit.edu 37 11 58477917 58477917 + Intron SNP A G G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLYAT 10249 broad.mit.edu;ucsc.edu 37 11 58477555 58477555 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLYAT 10249 hgsc.bcm.edu 37 11 58482866 58482866 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLYAT 10249 hgsc.bcm.edu;ucsc.edu 37 11 58482811 58482811 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GLYATL1 92292 broad.mit.edu 37 11 58723525 58723525 + 3'UTR SNP T C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GLYATL1 92292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58711084 58711084 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLYCTK 132158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52324497 52324497 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLYR1 84656 hgsc.bcm.edu;ucsc.edu 37 16 4867698 4867698 + Frame_Shift_Del DEL C C - novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLYR1 84656 hgsc.bcm.edu;ucsc.edu 37 16 4871369 4871369 + Intron SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GLYR1 84656 hgsc.bcm.edu;ucsc.edu 37 16 4855240 4855240 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GM2A 2760 broad.mit.edu 37 5 150646946 150646946 + Silent SNP C T T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GM2A 2760 broad.mit.edu 37 5 150647377 150647377 + 3'UTR DEL T - - rs150406361 unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GMCL1 64395 broad.mit.edu 37 2 70057234 70057234 + Silent SNP G A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GMCL1 64395 hgsc.bcm.edu;ucsc.edu 37 2 70096896 70096896 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GMCL1L 0 broad.mit.edu 37 5 177612983 177612983 + Missense_Mutation SNP G A A rs13169133 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GMEB1 10691 broad.mit.edu 37 1 29041385 29041386 + 3'UTR INS - A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GMEB1 10691 hgsc.bcm.edu;ucsc.edu 37 1 29018200 29018200 + Silent SNP A A T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GMFB 2764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 54948128 54948128 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GMFB 2764 hgsc.bcm.edu;ucsc.edu 37 14 54947588 54947588 + Intron SNP T T C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GMFB 2764 hgsc.bcm.edu;ucsc.edu 37 14 54948885 54948885 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GMIP 51291 broad.mit.edu 37 19 19744707 19744708 + Frame_Shift_Ins INS - A A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GML 2765 hgsc.bcm.edu;ucsc.edu 37 8 143927977 143927977 + Silent SNP T T G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GMPPB 29925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49760159 49760159 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GMPR 2766 hgsc.bcm.edu 37 6 16295417 16295418 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GMPS 8833 broad.mit.edu;hgsc.bcm.edu 37 3 155655512 155655512 + 3'UTR SNP G G T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNA11 2767 broad.mit.edu 37 19 3121300 3121300 + 3'UTR DEL T - - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNA12 2768 broad.mit.edu 37 7 2769130 2769131 + 3'UTR INS - GA GA novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNA13 10672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63010386 63010386 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNA13 10672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63049764 63049764 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNA13 10672 hgsc.bcm.edu;ucsc.edu 37 17 63010742 63010742 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNA13 10672 hgsc.bcm.edu;ucsc.edu 37 17 63052574 63052574 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNA15 2769 hgsc.bcm.edu 37 19 3162989 3162989 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNAI1 2770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 79764504 79764504 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAI2 2771 broad.mit.edu;hgsc.bcm.edu 37 3 50290461 50290461 + Silent SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAI2 2771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50294255 50294255 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAI2 2771 hgsc.bcm.edu 37 3 50295032 50295032 + Silent SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNAI3 2773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110129422 110129422 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAI3 2773 hgsc.bcm.edu 37 1 110134682 110134682 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNAO1 2775 broad.mit.edu 37 16 56377907 56377907 + 3'UTR DEL C - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNAO1 2775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56309956 56309956 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAS 2778 broad.mit.edu 37 20 57428891 57428891 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx GNAS 2778 broad.mit.edu 37 20 57429460 57429460 + Silent SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNAS 2778 broad.mit.edu 37 20 57429540 57429540 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C C C C C Unknown Unknown Somatic Phase_I Capture 454 Illumina GAIIx GNAS 2778 broad.mit.edu 37 20 57466762 57466764 + Intron DEL CCG - - novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 CCG CCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNAS 2778 hgsc.bcm.edu 37 20 57428889 57428889 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GNAS 2778 hgsc.bcm.edu;ucsc.edu 37 20 57484440 57484441 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAT1 2779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50231595 50231595 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAT2 2780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110151406 110151406 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNAZ 2781 hgsc.bcm.edu 37 22 23465575 23465575 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNB1 2782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1721888 1721888 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNB1 2782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1749311 1749311 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNB1 2782 hgsc.bcm.edu;ucsc.edu 37 1 1749342 1749342 + Intron SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNB1L 54584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 19776236 19776236 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNB2L1 10399 broad.mit.edu 37 5 180665830 180665832 + Intron DEL AAC - - rs144843273 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNB2L1 10399 broad.mit.edu 37 5 180665900 180665900 + Intron DEL T - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNB2L1 10399 broad.mit.edu 37 5 180668903 180668903 + Intron SNP A C C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNB2L1 10399 broad.mit.edu 37 5 180670812 180670812 + 5'UTR SNP G C C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNB4 59345 broad.mit.edu 37 3 179118847 179118847 + 3'UTR DEL T - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNB5 10681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52476835 52476835 + Silent SNP T T G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNB5 10681 hgsc.bcm.edu;ucsc.edu 37 15 52433455 52433455 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNG11 2791 hgsc.bcm.edu;ucsc.edu 37 7 93551485 93551485 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNG12 55970 broad.mit.edu 37 1 68171068 68171068 + 3'UTR SNP T C C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNG12 55970 hgsc.bcm.edu;ucsc.edu 37 1 68173341 68173341 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNG13 51764 broad.mit.edu 37 16 848396 848396 + 3'UTR SNP T C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNG3 2785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62475843 62475843 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNG7 2788 broad.mit.edu 37 19 2514984 2514984 + 3'UTR SNP A G G rs62121669 unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNG7 2788 hgsc.bcm.edu 37 19 2514984 2514984 + 3'UTR SNP A A G rs62121669 unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNG7 2788 hgsc.bcm.edu 37 19 2514986 2514986 + 3'UTR SNP G G A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNGT1 2792 broad.mit.edu 37 7 93535945 93535945 + 5'UTR SNP A G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNL1 2794 hgsc.bcm.edu 37 6 30520388 30520388 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNL2 29889 broad.mit.edu 37 1 38049232 38049232 + Intron SNP A C C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNL2 29889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38059398 38059398 + Silent SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNL2 29889 hgsc.bcm.edu 37 1 38056444 38056444 + Missense_Mutation SNP T T G rs112315084 unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNL2 29889 hgsc.bcm.edu;ucsc.edu 37 1 38058356 38058356 + Silent SNP A A G novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNL3 26354 broad.mit.edu 37 3 52728434 52728434 + 3'UTR SNP A G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNL3L 54552 broad.mit.edu;hgsc.bcm.edu 37 X 54585053 54585053 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNL3L 54552 broad.mit.edu;hgsc.bcm.edu 37 X 54587075 54587075 + 3'UTR SNP C C A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNL3L 54552 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54577474 54577474 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNL3L 54552 hgsc.bcm.edu 37 X 54577458 54577458 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNMT 27232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42931107 42931107 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNMT 27232 hgsc.bcm.edu 37 6 42931344 42931344 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNMT 27232 hgsc.bcm.edu;ucsc.edu 37 6 42929965 42929969 + Frame_Shift_Del DEL GCTGG GCTGG - novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 GCTGG GCTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNPDA1 10007 hgsc.bcm.edu 37 5 141391485 141391485 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GNPDA2 132789 broad.mit.edu 37 4 44705267 44705267 + Intron SNP C G G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNPTAB 79158 broad.mit.edu 37 12 102161789 102161789 + Intron SNP C T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNPTAB 79158 broad.mit.edu 37 12 102224492 102224494 + 5'UTR DEL GCC - - rs147436280 by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNPTAB 79158 broad.mit.edu 37 12 102224492 102224494 + 5'UTR DEL GCC - - rs147436280 by1000genomes TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GNPTAB 79158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 102163955 102163955 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNPTAB 79158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 102179968 102179968 + Silent SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNPTAB 79158 hgsc.bcm.edu;ucsc.edu 37 12 102151009 102151009 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNPTAB 79158 hgsc.bcm.edu;ucsc.edu 37 12 102158580 102158580 + Frame_Shift_Del DEL T T - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNRHR 2798 hgsc.bcm.edu 37 4 68611014 68611014 + Intron SNP A A C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GNS 2799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 65136922 65136922 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA1 2800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 127650593 127650593 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA1 2800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 127690521 127690521 + Silent SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA2 2801 broad.mit.edu 37 9 131019150 131019151 + 3'UTR INS - T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA2 2801 broad.mit.edu 37 9 131021536 131021536 + Silent SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA2 2801 hgsc.bcm.edu 37 9 131019438 131019438 + Missense_Mutation SNP G G A rs113640242 bycluster TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA2 2801 hgsc.bcm.edu 37 9 131020812 131020812 + Missense_Mutation SNP C C A rs143073995 byfrequency TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA2 2801 hgsc.bcm.edu;ucsc.edu 37 9 131019384 131019384 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA2B 0 broad.mit.edu 37 12 100550450 100550451 + 3'UTR INS - AT AT novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA2B 0 broad.mit.edu 37 12 100553648 100553648 + 5'Flank DEL T - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA2B 0 broad.mit.edu 37 12 100562234 100562234 + Intron DEL T - - novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA2B 0 broad.mit.edu 37 12 100562907 100562907 + Intron SNP C A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA3 2802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133351815 133351815 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA3 2802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133354283 133354283 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA3 2802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133359043 133359043 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA3 2802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133384990 133384990 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA3 2802 broad.mit.edu;ucsc.edu 37 12 133374959 133374959 + Missense_Mutation SNP C G G novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA3 2802 hgsc.bcm.edu 37 12 133393164 133393164 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA3 2802 hgsc.bcm.edu;ucsc.edu 37 12 133351772 133351772 + Silent SNP C C T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA4 2803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 37343778 37343778 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA5 9950 broad.mit.edu 37 14 93305910 93305910 + 3'UTR SNP T G G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA5 9950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93301996 93301996 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA5 9950 hgsc.bcm.edu 37 14 93276655 93276655 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA5 9950 hgsc.bcm.edu 37 14 93282749 93282749 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA5 9950 hgsc.bcm.edu 37 14 93282749 93282749 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA5 9950 hgsc.bcm.edu;ucsc.edu 37 14 93299661 93299665 + Frame_Shift_Del DEL GATTA GATTA - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GATTA GATTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA6A 342096 broad.mit.edu 37 15 74365099 74365099 + Silent SNP C A A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6A 342096 hgsc.bcm.edu 37 15 74367323 74367323 + Silent SNP C C T rs3743208 unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA6A 342096 hgsc.bcm.edu 37 15 74370974 74370974 + Silent SNP T T C rs3869329 unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGA6D 653643 broad.mit.edu 37 15 75586110 75586110 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82635117 82635117 + RNA SNP T C C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82635117 82635117 + RNA SNP T C C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82635163 82635163 + RNA SNP C G G rs3970729 unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82635163 82635163 + RNA SNP C G G rs3970729 unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82635163 82635163 + RNA SNP C G G rs3970729 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82635163 82635163 + RNA SNP C G G rs3970729 unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82809008 82809008 + Intron SNP G A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82809008 82809008 + Intron SNP G A A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 82809008 82809008 + Intron SNP G A A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 83014106 83014106 + Silent SNP T C C rs62009901 unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 83014106 83014106 + Silent SNP T C C rs62009901 unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 83014106 83014106 + Silent SNP T C C rs62009901 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 83014106 83014106 + Silent SNP T C C rs62009901 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 83014132 83014132 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L10 647042 broad.mit.edu 37 15 83014132 83014132 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053142 85053142 + RNA SNP C T T rs919418 unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053142 85053142 + RNA SNP C T T rs919418 unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053142 85053142 + RNA SNP C T T rs919418 unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053188 85053188 + RNA SNP C G G rs76166627 unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053188 85053188 + RNA SNP C G G rs76166627 unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053188 85053188 + RNA SNP C G G rs76166627 unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85053208 85053208 + RNA SNP A C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85055754 85055756 + RNA DEL CTC - - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85055754 85055756 + RNA DEL CTC - - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L5 374650 broad.mit.edu 37 15 85056047 85056047 + RNA SNP C G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA6L6 727832 hgsc.bcm.edu 37 15 20739938 20739943 + In_Frame_Del DEL CTCCTG CTCCTG - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CTCCTG CTCCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA8A 23015 broad.mit.edu 37 15 34673466 34673466 + 3'UTR SNP T A A rs192360931 by1000genomes TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA8C 0 broad.mit.edu 37 15 20771686 20771686 + 5'UTR SNP C T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA8C 0 broad.mit.edu 37 15 20771704 20771704 + 5'UTR SNP C T T rs75266621 unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA8C 0 broad.mit.edu 37 15 20777925 20777925 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA8C 0 broad.mit.edu 37 15 20777925 20777925 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLGA8C(dist=29954) 0 hgsc.bcm.edu 37 15 20810980 20810980 + IGR SNP G G T rs111832345 unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGA8C(dist=29959) 0 hgsc.bcm.edu 37 15 20810985 20810985 + IGR SNP G G T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGB1 2804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121412704 121412704 + Silent SNP A A G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGB1 2804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121415221 121415221 + Silent SNP T T C novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLGB1 2804 hgsc.bcm.edu;ucsc.edu 37 3 121413851 121413851 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLGB1 2804 hgsc.bcm.edu;ucsc.edu 37 3 121415214 121415214 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLIM4 27333 broad.mit.edu 37 3 167727938 167727938 + 3'UTR DEL A - - novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLIM4 27333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167750471 167750471 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GOLM1 51280 broad.mit.edu 37 9 88642645 88642645 + 3'UTR DEL T - - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLM1 51280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88692459 88692459 + Silent SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLM1 51280 broad.mit.edu;ucsc.edu 37 9 88648293 88648293 + Silent SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOLPH3 64083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32126321 32126321 + Silent SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLPH3 64083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32126354 32126354 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLPH3 64083 hgsc.bcm.edu;ucsc.edu 37 5 32126658 32126658 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOLT1A 127845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204170926 204170926 + Missense_Mutation SNP G G A rs150924607 by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOLT1B 51026 broad.mit.edu 37 12 21660962 21660962 + Intron SNP G A A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GON4L 54856 broad.mit.edu 37 1 155720106 155720106 + 3'UTR DEL A - - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GON4L 54856 broad.mit.edu;hgsc.bcm.edu 37 1 155721637 155721637 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 broad.mit.edu;hgsc.bcm.edu 37 1 155753882 155753882 + Splice_Site SNP T T G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 broad.mit.edu;hgsc.bcm.edu 37 1 155764938 155764938 + Silent SNP T T C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 broad.mit.edu;hgsc.bcm.edu 37 1 155764940 155764940 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155730387 155730387 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155732098 155732098 + Silent SNP C C A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155747557 155747557 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GON4L 54856 hgsc.bcm.edu 37 1 155733233 155733233 + Silent SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GON4L 54856 hgsc.bcm.edu 37 1 155735259 155735259 + Silent SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GON4L 54856 hgsc.bcm.edu;ucsc.edu 37 1 155726848 155726848 + Silent SNP C C A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GON4L 54856 hgsc.bcm.edu;ucsc.edu 37 1 155774833 155774833 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOPC 57120 hgsc.bcm.edu;ucsc.edu 37 6 117900162 117900162 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GORASP2 26003 hgsc.bcm.edu 37 2 171804897 171804897 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOSR1 9527 broad.mit.edu;hgsc.bcm.edu 37 17 28811828 28811828 + Intron SNP G G C novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOSR1 9527 broad.mit.edu;hgsc.bcm.edu 37 17 28846964 28846964 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOSR1 9527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 28849291 28849291 + Silent SNP C C T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOSR2 9570 hgsc.bcm.edu;ucsc.edu 37 17 45006907 45006907 + Silent SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GOT1 2805 broad.mit.edu 37 10 101157182 101157182 + 3'UTR SNP C T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GOT1 2805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101163595 101163595 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOT1 2805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101165548 101165549 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOT1 2805 hgsc.bcm.edu 37 10 101190282 101190283 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOT2 2806 broad.mit.edu;hgsc.bcm.edu 37 16 58757714 58757714 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOT2 2806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58743325 58743325 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GOT2 2806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58749998 58749998 + Silent SNP A A C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GP1BA 2811 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4836600 4836600 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GP1BA 2811 broad.mit.edu;ucsc.edu 37 17 4837666 4837666 + Silent SNP A C C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GP2 2813 broad.mit.edu;hgsc.bcm.edu 37 16 20331781 20331781 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GP5 2814 broad.mit.edu 37 3 194117151 194117151 + 3'UTR DEL G - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GP6 51206 hgsc.bcm.edu 37 19 55526103 55526104 + Frame_Shift_Ins INS - - CAGA rs113550298 unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GP6 51206 hgsc.bcm.edu 37 19 55526103 55526104 + Frame_Shift_Ins INS - - CAGA rs113550298 unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GP6 51206 hgsc.bcm.edu 37 19 55539049 55539049 + Silent SNP C C T rs5030705 bycluster;byfrequency;by1000genomes TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GP6 51206 hgsc.bcm.edu 37 19 55539049 55539049 + Silent SNP C C T rs5030705 bycluster;byfrequency;by1000genomes TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPAA1 8733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145138388 145138388 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPAM 57678 broad.mit.edu 37 10 113916968 113916968 + Intron SNP T C C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPAM 57678 broad.mit.edu;ucsc.edu 37 10 113932775 113932775 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPAT2 150763 hgsc.bcm.edu 37 2 96697056 96697056 + Silent SNP C C T rs62155738 unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPAT2 150763 hgsc.bcm.edu 37 2 96697056 96697056 + Silent SNP C C T rs62155738 unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPAT2 150763 hgsc.bcm.edu 37 2 96698126 96698126 + 5'UTR SNP T T C rs2579509 bycluster;bysubmitter;by2hit2allele TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPAT2 150763 hgsc.bcm.edu 37 2 96698126 96698126 + 5'UTR SNP T T C rs2579509 bycluster;bysubmitter;by2hit2allele TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPATCH1 55094 broad.mit.edu 37 19 33604579 33604579 + Intron SNP C T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPATCH1 55094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33608751 33608751 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH2 55105 broad.mit.edu 37 1 217604349 217604349 + 3'UTR SNP A G G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPATCH2 55105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 217665062 217665062 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH4 54865 broad.mit.edu 37 1 156568885 156568885 + Intron SNP G C C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPATCH4 54865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156565621 156565621 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH8 23131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42476146 42476146 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH8 23131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42476348 42476348 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH8 23131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42477558 42477558 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH8 23131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42477630 42477630 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPATCH8 23131 hgsc.bcm.edu;ucsc.edu 37 17 42475564 42475564 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPATCH8 23131 hgsc.bcm.edu;ucsc.edu 37 17 42475998 42475998 + Silent SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPBAR1 151306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219127645 219127645 + Silent SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPBP1 65056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56558502 56558502 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC2 221914 broad.mit.edu 37 7 99771214 99771217 + Intron DEL TTTC - - rs112290893 bycluster;by1000genomes TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 TTTC TTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPC2 221914 broad.mit.edu 37 7 99771305 99771306 + Intron INS - TCTT TCTT rs112290893 bycluster;by1000genomes TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPC2 221914 broad.mit.edu 37 7 99771762 99771763 + Intron DEL CA - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPC3 2719 broad.mit.edu 37 X 132670036 132670036 + 3'UTR SNP A G G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPC3 2719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132834052 132834052 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC4 2239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132437029 132437029 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC5 2262 broad.mit.edu 37 13 92051340 92051340 + Missense_Mutation SNP C T T rs183780526 by1000genomes TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPC5 2262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 92345764 92345764 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC5 2262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 92345927 92345927 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC5 2262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 92346002 92346002 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC6 10082 broad.mit.edu 37 13 95055616 95055616 + 3'UTR DEL T - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPC6 10082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 94482723 94482723 + Silent SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPC6 10082 hgsc.bcm.edu;ucsc.edu 37 13 95034756 95034756 + Missense_Mutation SNP C C G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPCPD1 56261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 5559074 5559074 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPCPD1 56261 broad.mit.edu 37 20 5527435 5527435 + 3'UTR DEL T - - rs148372332 by1000genomes TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPCPD1 56261 hgsc.bcm.edu;ucsc.edu 37 20 5559154 5559154 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPD2 2820 broad.mit.edu;ucsc.edu 37 2 157426664 157426664 + Silent SNP G A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPHA2 170589 broad.mit.edu 37 11 64702169 64702169 + 3'UTR DEL G - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPHA2 170589 hgsc.bcm.edu 37 11 64702280 64702281 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPHB5 122876 hgsc.bcm.edu 37 14 63784409 63784409 + Missense_Mutation SNP C C G rs79957669 bycluster TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPHB5 122876 hgsc.bcm.edu 37 14 63784409 63784409 + Missense_Mutation SNP C C G rs79957669 bycluster TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPHN 10243 broad.mit.edu;hgsc.bcm.edu 37 14 67389564 67389564 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPHN 10243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 67147886 67147886 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPHN 10243 hgsc.bcm.edu 37 14 67647611 67647611 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPHN 10243 hgsc.bcm.edu;ucsc.edu 37 14 67390942 67390943 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPI 2821 broad.mit.edu 37 19 34857121 34857121 + Intron SNP T A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPI 2821 hgsc.bcm.edu;ucsc.edu 37 19 34890920 34890920 + Silent SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPKOW 27238 broad.mit.edu;ucsc.edu 37 X 48979947 48979947 + Silent SNP A T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPLD1 2822 broad.mit.edu 37 6 24429111 24429111 + 3'UTR SNP T G G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPLD1 2822 hgsc.bcm.edu;ucsc.edu 37 6 24473886 24473886 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPM6A 2823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 176556193 176556193 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPM6A 2823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 176622807 176622807 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPM6A 2823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 176622807 176622807 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPN1 11321 broad.mit.edu 37 2 27852150 27852151 + Intron INS - G G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPN1 11321 broad.mit.edu 37 2 27852150 27852151 + Intron INS - G G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPN1 11321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27851883 27851883 + RNA SNP C C A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPN1 11321 hgsc.bcm.edu;ucsc.edu 37 2 27861049 27861049 + RNA SNP T T A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPN2 54707 broad.mit.edu 37 1 27206046 27206046 + 3'UTR SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPN2 54707 broad.mit.edu;hgsc.bcm.edu 37 1 27216524 27216524 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPN3 51184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110897606 110897606 + Silent SNP G G T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPNMB 10457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23307604 23307604 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPNMB 10457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23309735 23309735 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR101 83550 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 136112591 136112591 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR101 83550 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 136112680 136112680 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR107 57720 broad.mit.edu 37 9 132891134 132891134 + Intron SNP C A A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR107 57720 hgsc.bcm.edu;ucsc.edu 37 9 132897301 132897301 + Intron SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR108 56927 hgsc.bcm.edu;ucsc.edu 37 19 6731511 6731511 + Silent SNP C C T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR108 56927 hgsc.bcm.edu;ucsc.edu 37 19 6736679 6736679 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR109A 0 broad.mit.edu;hgsc.bcm.edu 37 12 123187634 123187634 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR109A 0 broad.mit.edu;hgsc.bcm.edu 37 12 123187635 123187635 + Silent SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR110 266977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46969278 46969278 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR110 266977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46977033 46977033 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR110 266977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46977222 46977222 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR111 222611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 47649747 47649747 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR111 222611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 47650019 47650019 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR112 139378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135431578 135431578 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GPR112 139378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135441581 135441581 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GPR112 139378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135441605 135441605 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR112 139378 hgsc.bcm.edu 37 X 135431960 135431960 + Missense_Mutation SNP C C A rs145052934 unknown;alternate_allele TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR112 139378 hgsc.bcm.edu 37 X 135498624 135498624 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR112 139378 hgsc.bcm.edu;ucsc.edu 37 X 135432122 135432122 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID GPR113 165082 hgsc.bcm.edu 37 2 26540932 26540932 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR115 221393 hgsc.bcm.edu;ucsc.edu 37 6 47680115 47680115 + Frame_Shift_Del DEL T T - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR115 221393 hgsc.bcm.edu;ucsc.edu 37 6 47681783 47681783 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR115 221393 hgsc.bcm.edu;ucsc.edu 37 6 47684543 47684543 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR116 221395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46826546 46826546 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR116 221395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46830726 46830726 + Missense_Mutation SNP T T G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR116 221395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46849806 46849806 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR116 221395 hgsc.bcm.edu;ucsc.edu 37 6 46856140 46856140 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR119 139760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129518457 129518457 + Missense_Mutation SNP G G A rs138209054 byfrequency;alternate_allele TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR120 0 hgsc.bcm.edu;ucsc.edu 37 10 95347225 95347225 + Silent SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR12 2835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 27333002 27333002 + Silent SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR12 2835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 27333242 27333242 + Silent SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR123 84435 broad.mit.edu;hgsc.bcm.edu 37 10 134942620 134942620 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR123 84435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134910562 134910562 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR123 84435 broad.mit.edu;ucsc.edu 37 10 134902394 134902394 + 5'UTR SNP T A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR124 25960 broad.mit.edu 37 8 37693252 37693252 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR124 25960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 37688398 37688398 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR124 25960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 37696506 37696506 + Silent SNP C C T rs147055217 byfrequency TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR125 166647 broad.mit.edu;hgsc.bcm.edu 37 4 22437012 22437012 + Silent SNP A A T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR125 166647 hgsc.bcm.edu;ucsc.edu 37 4 22394274 22394274 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR126 57211 broad.mit.edu 37 6 142623349 142623349 + 5'UTR SNP G A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR126 57211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 142691426 142691426 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR126 57211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 142737063 142737063 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR126 57211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 142741085 142741085 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR1 2825 hgsc.bcm.edu;ucsc.edu 37 2 207041953 207041953 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR128 84873 broad.mit.edu;hgsc.bcm.edu 37 3 100354672 100354672 + Splice_Site SNP T T A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR128 84873 broad.mit.edu;ucsc.edu 37 3 100356181 100356181 + Silent SNP C T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR128 84873 hgsc.bcm.edu 37 3 100349643 100349643 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR133 283383 broad.mit.edu;hgsc.bcm.edu 37 12 131438960 131438960 + 5'UTR SNP C C A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR133 283383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 131616270 131616270 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR133 283383 hgsc.bcm.edu;ucsc.edu 37 12 131488769 131488769 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR137 56834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64055547 64055547 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR137 56834 hgsc.bcm.edu;ucsc.edu 37 11 64054436 64054436 + Splice_Site SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR137 56834 hgsc.bcm.edu;ucsc.edu 37 11 64054443 64054443 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR137B 7107 hgsc.bcm.edu;ucsc.edu 37 1 236332073 236332073 + Intron SNP T T C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR141 353345 hgsc.bcm.edu;ucsc.edu 37 7 37780555 37780555 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR143 4935 hgsc.bcm.edu;ucsc.edu 37 X 9714193 9714193 + Silent SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR144 347088 hgsc.bcm.edu;ucsc.edu 37 9 127214928 127214928 + Silent SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR148 344561 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131486857 131486857 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR148 344561 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131487497 131487497 + Missense_Mutation SNP G G T rs113110453 byfrequency;alternate_allele TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR149 344758 broad.mit.edu 37 3 154147489 154147489 + 5'UTR SNP C T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR149 344758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154146980 154146980 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR149 344758 hgsc.bcm.edu 37 3 154146465 154146465 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR152 390212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67219269 67219269 + Silent SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR152 390212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67219407 67219407 + Silent SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR152 390212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67220120 67220120 + Missense_Mutation SNP A A C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR152 390212 hgsc.bcm.edu;ucsc.edu 37 11 67218864 67218864 + Silent SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR15 2838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 98251797 98251797 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR15 2838 broad.mit.edu;ucsc.edu 37 3 98251550 98251550 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR155 151556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 175301104 175301104 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR158 57512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 25887644 25887644 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR158 57512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 25887796 25887796 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR158 57512 hgsc.bcm.edu;ucsc.edu 37 10 25701402 25701402 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR160 26996 broad.mit.edu;hgsc.bcm.edu 37 3 169802072 169802072 + Silent SNP T T C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR160 26996 hgsc.bcm.edu;ucsc.edu 37 3 169802564 169802564 + Silent SNP G G A rs148749842 unknown;alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR161 23432 hgsc.bcm.edu 37 1 168073747 168073747 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR162 27239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6936017 6936017 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR171 29909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150916820 150916820 + Silent SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR171 29909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150917098 150917098 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR17 2840 broad.mit.edu 37 2 128407597 128407597 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR172A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145584463 145584463 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR172A 0 hgsc.bcm.edu 37 8 145584534 145584535 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR172A 0 hgsc.bcm.edu 37 8 145584534 145584535 + Frame_Shift_Ins INS - - G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR172B 0 hgsc.bcm.edu 37 17 4936580 4936582 + In_Frame_Del DEL GCC GCC - novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR172B 0 hgsc.bcm.edu 37 17 4936580 4936582 + In_Frame_Del DEL GCC GCC - novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR172B 0 hgsc.bcm.edu 37 17 4937083 4937083 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR172B 0 hgsc.bcm.edu;ucsc.edu 37 17 4937468 4937468 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR173 54328 broad.mit.edu 37 X 53107201 53107202 + 3'UTR DEL TC - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR173 54328 broad.mit.edu 37 X 53107201 53107204 + 3'UTR DEL TCTC - - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 TCTC TCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR173 54328 hgsc.bcm.edu 37 X 53106303 53106303 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR173 54328 hgsc.bcm.edu 37 X 53106687 53106687 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR174 84636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78426732 78426732 + Silent SNP C C A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR174 84636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78427224 78427224 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR174 84636 hgsc.bcm.edu;ucsc.edu 37 X 78426650 78426650 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR179 440435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36482951 36482951 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR179 440435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36486397 36486397 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR179 440435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36499492 36499492 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR179 440435 hgsc.bcm.edu 37 17 36483603 36483604 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR179 440435 hgsc.bcm.edu;ucsc.edu 37 17 36483373 36483385 + Frame_Shift_Del DEL TTCTTTCAGTCAC TTCTTTCAGTCAC - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 TTCTTTCAGTCAC TTCTTTCAGTCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR179 440435 hgsc.bcm.edu;ucsc.edu 37 17 36492024 36492024 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR179 440435 hgsc.bcm.edu;ucsc.edu 37 17 36495345 36495345 + Silent SNP T T G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR180 160897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95257668 95257668 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR180 160897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95271760 95271762 + In_Frame_Del DEL GTT GTT - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 GTT GTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR182 11318 hgsc.bcm.edu 37 12 57390041 57390041 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR183 1880 hgsc.bcm.edu;ucsc.edu 37 13 99947650 99947652 + In_Frame_Del DEL AAT AAT - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 AAT AAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR19 2842 broad.mit.edu;ucsc.edu 37 12 12815272 12815272 + Silent SNP G A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR26 2849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 125426346 125426346 + Silent SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR26 2849 broad.mit.edu;ucsc.edu 37 10 125447555 125447555 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR27 2850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 71804019 71804019 + Silent SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR31 2853 hgsc.bcm.edu 37 6 167570628 167570628 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR32 2854 hgsc.bcm.edu 37 19 51274851 51274851 + Missense_Mutation SNP A A C rs78840344 bycluster TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR35 2859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241555893 241555893 + 5'UTR SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR35 2859 hgsc.bcm.edu 37 2 241570127 241570127 + Missense_Mutation SNP C C T rs12468485 bycluster;byfrequency;byhapmap;by1000genomes TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR37 2861 hgsc.bcm.edu;ucsc.edu 37 7 124404891 124404891 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR37L1 9283 broad.mit.edu;hgsc.bcm.edu 37 1 202097558 202097558 + Silent SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR37L1 9283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202092521 202092521 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR39 2863 broad.mit.edu 37 2 133175094 133175094 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR4 2828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46094848 46094848 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR4 2828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46094945 46094945 + Silent SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR45 11250 broad.mit.edu 37 2 105859013 105859013 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR45 11250 broad.mit.edu 37 2 105859901 105859901 + 3'UTR DEL T - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR45 11250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105859391 105859391 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR45 11250 hgsc.bcm.edu;ucsc.edu 37 2 105859154 105859154 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR50 9248 hgsc.bcm.edu 37 X 150349562 150349562 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR50 9248 hgsc.bcm.edu;ucsc.edu 37 X 150349558 150349569 + In_Frame_Del DEL CACCACTGGCCA CACCACTGGCCA - rs68058591 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 CACCACTGGCCA CACCACTGGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR50 9248 hgsc.bcm.edu;ucsc.edu 37 X 150349558 150349569 + In_Frame_Del DEL CACCACTGGCCA CACCACTGGCCA - rs68058591 unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CACCACTGGCCA CACCACTGGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR52 9293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 174418158 174418158 + Silent SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR61 83873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110086219 110086219 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR61 83873 hgsc.bcm.edu;ucsc.edu 37 1 110086265 110086265 + Silent SNP T T C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR62 118442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51990645 51990645 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR63 81491 broad.mit.edu 37 6 97246106 97246106 + 3'UTR DEL A - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR63 81491 broad.mit.edu 37 6 97246106 97246106 + 3'UTR DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR63 81491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97247000 97247000 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR64 10149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 19026097 19026097 + Splice_Site SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR64 10149 hgsc.bcm.edu 37 X 19025373 19025373 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR64 10149 hgsc.bcm.edu;ucsc.edu 37 X 19058304 19058304 + Splice_Region SNP T T A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR65 8477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88477438 88477438 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR75 10936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54081819 54081819 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR77 27202 broad.mit.edu 37 19 47844249 47844249 + Missense_Mutation SNP C T T rs144687097 unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR78 27201 broad.mit.edu;hgsc.bcm.edu 37 4 8583134 8583134 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR78 27201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8584302 8584302 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR78 27201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8584304 8584304 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR78 27201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8588871 8588871 + Silent SNP G G A rs148589120 unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR78 27201 hgsc.bcm.edu 37 4 8582799 8582799 + Silent SNP C C T rs138084089 byfrequency TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR81 0 broad.mit.edu 37 12 123213779 123213779 + 3'UTR SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR83 10888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94113463 94113463 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR84 53831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54757575 54757575 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR84 53831 hgsc.bcm.edu;ucsc.edu 37 12 54757068 54757068 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR85 54329 broad.mit.edu 37 7 112724772 112724772 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR85 54329 broad.mit.edu 37 7 112724827 112724827 + Translation_Start_Site SNP T C C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR89A 653519 broad.mit.edu 37 1 145764885 145764885 + 3'UTR SNP T C C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR89B 51463 hgsc.bcm.edu 37 1 147415632 147415632 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR97 222487 broad.mit.edu 37 16 57722561 57722561 + 3'UTR DEL C - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR97 222487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57713136 57713136 + Silent SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR97 222487 hgsc.bcm.edu 37 16 57719575 57719575 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR98 84059 broad.mit.edu;hgsc.bcm.edu 37 5 90079095 90079095 + Silent SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu 37 5 90149227 90149227 + Silent SNP A A G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89941846 89941846 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89971958 89971958 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89979836 89979836 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89986798 89986798 + Silent SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89989763 89989763 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 90025457 90025457 + Splice_Site SNP A A C novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 90074272 90074272 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 90086882 90086882 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 broad.mit.edu;ucsc.edu 37 5 90281200 90281200 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPR98 84059 hgsc.bcm.edu 37 5 89999583 89999583 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 89923473 89923473 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 89925092 89925092 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 89969937 89969938 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 89989909 89989909 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 90000251 90000252 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 90144583 90144583 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRASP1 9737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101910199 101910199 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRASP1 9737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101911040 101911041 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRASP1 9737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101912814 101912815 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRASP1 9737 hgsc.bcm.edu 37 X 101911560 101911560 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRASP2 114928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101971084 101971084 + Silent SNP C C A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC5A 9052 broad.mit.edu 37 12 13065679 13065680 + 3'UTR INS - T T rs111900693 unknown;alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRC5A 9052 broad.mit.edu 37 12 13065680 13065680 + 3'UTR DEL T - - rs111900693 unknown;alternate_allele TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRC5A 9052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13061472 13061472 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC5B 51704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19883415 19883415 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC5C 55890 broad.mit.edu 37 17 72439809 72439809 + Intron DEL G - - rs148573141 bycluster;by1000genomes TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRC5C 55890 broad.mit.edu 37 17 72443292 72443292 + 3'UTR SNP A G G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRC5C 55890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72443073 72443073 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC6A 222545 broad.mit.edu;hgsc.bcm.edu 37 6 117113259 117113259 + 3'UTR SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC6A 222545 hgsc.bcm.edu 37 6 117113761 117113762 + Frame_Shift_Ins INS - - GG novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC6A 222545 hgsc.bcm.edu 37 6 117113762 117113763 + Frame_Shift_Ins INS - - A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRC6A 222545 hgsc.bcm.edu;ucsc.edu 37 6 117113765 117113766 + In_Frame_Ins INS - - TCC novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176026768 176026768 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176024673 176024673 + Silent SNP G G C rs150980841 unknown;alternate_allele TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRIN1 114787 hgsc.bcm.edu 37 5 176026120 176026143 + In_Frame_Del DEL CTCAAAGACCCAGGATCCTCCTTC CTCAAAGACCCAGGATCCTCCTTC - rs142779818 bycluster;by1000genomes TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 CTCAAAGACCCAGGATCCTCCTTC CTCAAAGACCCAGGATCCTCCTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026120 176026143 + In_Frame_Del DEL CTCAAAGACCCAGGATCCTCCTTC CTCAAAGACCCAGGATCCTCCTTC - rs142779818 bycluster;by1000genomes TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 CTCAAAGACCCAGGATCCTCCTTC CTCAAAGACCCAGGATCCTCCTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026122 176026122 + Silent SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026124 176026147 + In_Frame_Del DEL AAGACCCAGGATCCTCCTTCCTCG AAGACCCAGGATCCTCCTTCCTCG - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 AAGACCCAGGATCCTCCTTCCTCG AAGACCCAGGATCCTCCTTCCTCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026129 176026129 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRIN1 114787 hgsc.bcm.edu 37 5 176026129 176026129 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRIN1 114787 hgsc.bcm.edu 37 5 176026129 176026129 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026138 176026138 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026138 176026138 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN1 114787 hgsc.bcm.edu 37 5 176026143 176026143 + Silent SNP C C T rs77245696 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRIN1 114787 hgsc.bcm.edu 37 5 176026146 176026146 + Silent SNP C C T rs79403503 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRIN2 9721 broad.mit.edu 37 10 47001294 47001294 + 3'UTR DEL G - - rs141454479 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRIN2 9721 broad.mit.edu 37 10 47002410 47002411 + 3'UTR DEL CA - - rs71977645 unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRIN2 9721 broad.mit.edu 37 10 47004355 47004356 + 3'UTR INS - A A rs61591567 unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRIN2 9721 broad.mit.edu 37 10 47005612 47005614 + 3'UTR DEL AGA - - rs66949461 bycluster;by1000genomes TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRIN2 9721 hgsc.bcm.edu 37 10 46999591 46999592 + In_Frame_Ins INS - - ATGAGGGAG rs112620425 unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN2 9721 hgsc.bcm.edu 37 10 46999591 46999592 + In_Frame_Ins INS - - ATGAGGGAG rs112620425 unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN2 9721 hgsc.bcm.edu 37 10 46999601 46999601 + Missense_Mutation SNP G G A rs9422022 bycluster;byfrequency TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPRIN2 9721 hgsc.bcm.edu 37 10 46999601 46999601 + Missense_Mutation SNP G G A rs9422022 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPRIN3 285513 broad.mit.edu 37 4 90171338 90171338 + 5'UTR SNP G T T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPRIN3 285513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 90170546 90170546 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPSM1 26086 broad.mit.edu 37 9 139250012 139250013 + Intron DEL AG - - rs10647805 unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPSM1 26086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139228923 139228923 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPSM1 26086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139250844 139250844 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPSM1 26086 hgsc.bcm.edu 37 9 139234168 139234168 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPSM2 29899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109466798 109466798 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPSM3 63940 hgsc.bcm.edu 37 6 32159933 32159934 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPT2 84706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46950590 46950590 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPT2 84706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46958369 46958369 + Silent SNP C C T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPT 2875 broad.mit.edu 37 8 145731528 145731528 + Intron DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPT 2875 hgsc.bcm.edu 37 8 145732305 145732306 + Frame_Shift_Ins INS - - C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX3 2878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150407548 150407548 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX3 2878 hgsc.bcm.edu 37 5 150407659 150407659 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPX4 2879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1106419 1106419 + Silent SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX4 2879 broad.mit.edu;ucsc.edu 37 19 1106418 1106418 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPX5 2880 broad.mit.edu;hgsc.bcm.edu 37 6 28503665 28503665 + downstream SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX5 2880 hgsc.bcm.edu;ucsc.edu 37 6 28497339 28497339 + Missense_Mutation SNP G G A rs115051243 bycluster;byfrequency;by1000genomes TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX6 257202 broad.mit.edu 37 6 28471800 28471801 + 3'UTR DEL AC - - rs112731344 unknown;alternate_allele TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPX6 257202 hgsc.bcm.edu;ucsc.edu 37 6 28483425 28483425 + Splice_Region SNP C C T novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GPX6 257202 hgsc.bcm.edu;ucsc.edu 37 6 28483478 28483478 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX8 493869 broad.mit.edu 37 5 54460230 54460230 + 3'UTR DEL T - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GPX8 493869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54456928 54456928 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GPX8 493869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54459987 54459987 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRAMD1A 57655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35501012 35501012 + Silent SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRAMD1A 57655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35501023 35501023 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRAMD1B 57476 hgsc.bcm.edu 37 11 123477468 123477468 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRAMD1B 57476 hgsc.bcm.edu 37 11 123477468 123477468 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRAMD1B 57476 hgsc.bcm.edu 37 11 123477481 123477481 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRAMD1B 57476 hgsc.bcm.edu 37 11 123480598 123480599 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRAMD1B 57476 hgsc.bcm.edu;ucsc.edu 37 11 123489493 123489493 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRAMD1C 54762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113627861 113627861 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRAP2 9402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40343157 40343157 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRASP(dist=22861) 0 broad.mit.edu;hgsc.bcm.edu 37 12 52432532 52432532 + IGR SNP A A C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRB10 2887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50660657 50660657 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRB10 2887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50737542 50737542 + Silent SNP G G A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRB2 2885 broad.mit.edu;hgsc.bcm.edu 37 17 73316420 73316420 + 3'UTR SNP A A C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRB2 2885 hgsc.bcm.edu 37 17 73316550 73316550 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRB7 2886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37899552 37899552 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRB7 2886 hgsc.bcm.edu 37 17 37898909 37898909 + Silent SNP A A C rs36079893 bycluster;byfrequency;by1000genomes TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRB7 2886 hgsc.bcm.edu 37 17 37899216 37899216 + Silent SNP T T A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRB7 2886 hgsc.bcm.edu 37 17 37903011 37903011 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GREB1 9687 broad.mit.edu 37 2 11725906 11725906 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GREB1 9687 broad.mit.edu 37 2 11752468 11752468 + Intron SNP T G G novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GREB1 9687 broad.mit.edu;hgsc.bcm.edu 37 2 11767208 11767208 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1 9687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11706655 11706655 + Silent SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1 9687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11706699 11706699 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1 9687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11772090 11772090 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1 9687 broad.mit.edu;ucsc.edu 37 2 11706697 11706697 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GREB1 9687 broad.mit.edu;ucsc.edu 37 2 11738892 11738892 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GREB1 9687 hgsc.bcm.edu 37 2 11702633 11702633 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GREB1 9687 hgsc.bcm.edu 37 2 11725903 11725903 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GREB1 9687 hgsc.bcm.edu 37 2 11725903 11725903 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GREB1 9687 hgsc.bcm.edu 37 2 11777871 11777871 + Silent SNP G G A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GREB1 9687 hgsc.bcm.edu;ucsc.edu 37 2 11755345 11755345 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GREB1L 80000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19029597 19029597 + Missense_Mutation SNP T T A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1L 80000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19032159 19032159 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1L 80000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19076555 19076555 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1L 80000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19093876 19093876 + Silent SNP C C A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GREB1L 80000 broad.mit.edu 37 18 19076571 19076571 + Silent SNP A G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GREB1L 80000 hgsc.bcm.edu;ucsc.edu 37 18 19088471 19088471 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRHL1 29841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10101473 10101473 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRHL2 79977 hgsc.bcm.edu;ucsc.edu 37 8 102586051 102586051 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRHL3 57822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24666207 24666207 + Silent SNP C C G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRHPR 9380 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 37424868 37424868 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRHPR 9380 hgsc.bcm.edu 37 9 37424907 37424908 + Frame_Shift_Ins INS - - GG novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA1 2890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 152873521 152873521 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA1 2890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153077687 153077687 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA1 2890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153149881 153149881 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA1 2890 hgsc.bcm.edu;ucsc.edu 37 5 153149729 153149729 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIA2 2891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 158142838 158142838 + Silent SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA2 2891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 158257620 158257620 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA2 2891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 158282180 158282180 + Silent SNP A A C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA2 2891 hgsc.bcm.edu 37 4 158257863 158257863 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIA2 2891 hgsc.bcm.edu;ucsc.edu 37 4 158254482 158254482 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIA3 2892 broad.mit.edu;hgsc.bcm.edu 37 X 122318320 122318320 + 5'UTR SNP T T C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA4 2893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 105842733 105842733 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIA4 2893 broad.mit.edu;ucsc.edu 37 11 105782614 105782614 + Intron DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRIA4 2893 hgsc.bcm.edu;ucsc.edu 37 11 105795320 105795320 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRID1 2894 broad.mit.edu;hgsc.bcm.edu 37 10 87407096 87407096 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID1 2894 broad.mit.edu;hgsc.bcm.edu 37 10 87966375 87966375 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID1 2894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 87407078 87407078 + Silent SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID1 2894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 87966299 87966299 + Silent SNP G G C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID1 2894 broad.mit.edu;ucsc.edu 37 10 87628903 87628903 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRID1 2894 hgsc.bcm.edu;ucsc.edu 37 10 87379671 87379671 + Silent SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRID2 2895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 94316836 94316836 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID2 2895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 94376877 94376877 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID2 2895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 94547477 94547477 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID2 2895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 94693413 94693413 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRID2IP 392862 hgsc.bcm.edu 37 7 6550536 6550536 + Intron SNP T T G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK1 2897 broad.mit.edu;hgsc.bcm.edu 37 21 31023608 31023608 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK1 2897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30961307 30961307 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK1 2897 hgsc.bcm.edu 37 21 31311718 31311718 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIK2 2898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 102503283 102503283 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK2 2898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 102503298 102503298 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK2 2898 hgsc.bcm.edu;ucsc.edu 37 6 102266315 102266315 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIK2 2898 hgsc.bcm.edu;ucsc.edu 37 6 102483373 102483373 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIK3 2899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 37271904 37271904 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK3 2899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 37335385 37335385 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK4 2900 hgsc.bcm.edu;ucsc.edu 37 11 120833224 120833224 + Silent SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIK5 2901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42507514 42507514 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK5 2901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42563630 42563630 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIK5 2901 hgsc.bcm.edu;ucsc.edu 37 19 42566909 42566909 + Splice_Site SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN1 2902 broad.mit.edu 37 9 140040311 140040311 + Missense_Mutation SNP C T T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRIN1 2902 hgsc.bcm.edu 37 9 140057373 140057373 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIN2A 2903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 9857569 9857569 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN2A 2903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 9943692 9943692 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN2A 2903 hgsc.bcm.edu 37 16 9857305 9857305 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIN2A 2903 hgsc.bcm.edu;ucsc.edu 37 16 9916232 9916232 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu 37 12 13717155 13717155 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13761600 13761600 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13769424 13769424 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13906469 13906469 + Silent SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13906470 13906470 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14019045 14019045 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN2B 2904 hgsc.bcm.edu 37 12 13716545 13716545 + Silent SNP C C G rs149089581 unknown;alternate_allele TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIN2B 2904 hgsc.bcm.edu 37 12 13906649 13906649 + Silent SNP T T A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIN2C 2905 hgsc.bcm.edu 37 17 72842988 72842988 + Silent SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRIN3A 116443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104341505 104341505 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN3A 116443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104499650 104499650 + Silent SNP G G T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRIN3B 116444 broad.mit.edu 37 19 1003373 1003374 + Frame_Shift_Ins INS - G G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRIN3B 116444 broad.mit.edu 37 19 1008812 1008813 + Intron INS - C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRIN3B 116444 broad.mit.edu 37 19 1009551 1009577 + In_Frame_Del DEL GCCCCCGCGGAGGCCCCACCACACTCT - - rs142516571 bycluster;by1000genomes TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 GCCCCCGCGGAGGCCCCACCACACTCT GCCCCCGCGGAGGCCCCACCACACTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRIN3B 116444 broad.mit.edu;ucsc.edu 37 19 1004979 1004979 + Silent SNP C T T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRIN3B 116444 hgsc.bcm.edu 37 19 1007860 1007861 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRINA 2907 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145066243 145066243 + Silent SNP A A T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRK5 2869 hgsc.bcm.edu;ucsc.edu 37 10 121190918 121190918 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRK6 2870 broad.mit.edu 37 5 176863393 176863393 + Splice_Site SNP G T T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRK6 2870 broad.mit.edu;hgsc.bcm.edu 37 5 176863239 176863239 + Missense_Mutation SNP A A C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRK6 2870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176860405 176860405 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRLF1 0 broad.mit.edu;hgsc.bcm.edu 37 19 47422608 47422608 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRLF1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47424189 47424189 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRLF1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47491245 47491245 + Splice_Site SNP G G C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRLF1 0 hgsc.bcm.edu 37 19 47424676 47424676 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRLF1 0 hgsc.bcm.edu;ucsc.edu 37 19 47424564 47424564 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRLF1 0 hgsc.bcm.edu;ucsc.edu 37 19 47424672 47424672 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM1 2911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146720058 146720058 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GRM1 2911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146720336 146720336 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM1 2911 hgsc.bcm.edu;ucsc.edu 37 6 146351323 146351324 + Frame_Shift_Del INS - - A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM1 2911 hgsc.bcm.edu;ucsc.edu 37 6 146720530 146720530 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID GRM2 2912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51749554 51749555 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM2 2912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51749885 51749885 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM3 2913 broad.mit.edu 37 7 86394381 86394381 + 5'UTR SNP T A A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM3 2913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 86468364 86468364 + Missense_Mutation SNP C C A rs17856664 unknown;alternate_allele TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM3 2913 hgsc.bcm.edu 37 7 86416162 86416162 + Missense_Mutation SNP C C T rs184377536 by1000genomes TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM4 2914 broad.mit.edu 37 6 34100855 34100855 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM4 2914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33996013 33996013 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM4 2914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34100944 34100944 + Silent SNP G G T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM4 2914 hgsc.bcm.edu 37 6 34059775 34059775 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM5 2915 broad.mit.edu 37 11 88781056 88781056 + 5'UTR SNP C A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM5 2915 broad.mit.edu 37 11 88781056 88781056 + 5'UTR SNP C A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM5 2915 broad.mit.edu;hgsc.bcm.edu 37 11 88780709 88780709 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM5 2915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 88300984 88300984 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM5 2915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 88330476 88330476 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM5 2915 hgsc.bcm.edu 37 11 88780946 88780946 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM6 2916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178416292 178416292 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM6 2916 hgsc.bcm.edu 37 5 178410194 178410195 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM6 2916 hgsc.bcm.edu 37 5 178410194 178410195 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRM7 2917 broad.mit.edu;ucsc.edu 37 3 6903262 6903262 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM8 2918 broad.mit.edu 37 7 126078884 126078884 + 3'UTR DEL T - - rs147669705 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM8 2918 broad.mit.edu 37 7 126079080 126079080 + 3'UTR SNP C T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRM8 2918 hgsc.bcm.edu 37 7 126086265 126086265 + Silent SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM8 2918 hgsc.bcm.edu 37 7 126173363 126173363 + Silent SNP A A G novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM8 2918 hgsc.bcm.edu 37 7 126544621 126544621 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM8 2918 hgsc.bcm.edu 37 7 126883113 126883113 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRM8 2918 hgsc.bcm.edu;ucsc.edu 37 7 126883202 126883202 + Silent SNP G G A novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRN 2896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42426617 42426617 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRPEL1 80273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 7062876 7062876 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRPEL2 134266 broad.mit.edu 37 5 148732934 148732934 + 3'UTR DEL T - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRPR 2925 broad.mit.edu;hgsc.bcm.edu 37 X 16142010 16142010 + 5'UTR SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRSF1 2926 broad.mit.edu 37 4 71690078 71690078 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRTP1 79774 broad.mit.edu;ucsc.edu 37 13 114018185 114018185 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GRTP1 79774 hgsc.bcm.edu 37 13 113978880 113978880 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRWD1 83743 broad.mit.edu;hgsc.bcm.edu 37 19 48954349 48954349 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GRXCR1 389207 hgsc.bcm.edu 37 4 43032469 43032469 + Missense_Mutation SNP G G A rs146696590 by1000genomes TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GRXCR1 389207 hgsc.bcm.edu;ucsc.edu 37 4 42895568 42895568 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSDMC 56169 hgsc.bcm.edu;ucsc.edu 37 8 130763783 130763783 + Intron SNP C C T rs142118174 by1000genomes TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSDMD 79792 broad.mit.edu 37 8 144643480 144643480 + Intron SNP G A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSDMD 79792 broad.mit.edu 37 8 144645177 144645177 + 3'UTR SNP T G G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSG1 83445 hgsc.bcm.edu 37 12 13241706 13241706 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSG2 83903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3629541 3629541 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSG2 83903 hgsc.bcm.edu 37 17 3628888 3628888 + Silent SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSK3A 2931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42736808 42736808 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSK3A 2931 hgsc.bcm.edu 37 19 42736734 42736734 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSN 2934 broad.mit.edu 37 9 124095004 124095004 + 3'UTR DEL T - - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSN 2934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 124072995 124072995 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSPT1 2935 broad.mit.edu 37 16 11984971 11984971 + Frame_Shift_Del DEL T - - novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSPT1 2935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11971401 11971401 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSPT1 2935 hgsc.bcm.edu;ucsc.edu 37 16 11988778 11988778 + Intron SNP A A C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSPT2 23708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 51487802 51487802 + Silent SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSPT2 23708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 51488138 51488138 + Silent SNP T T A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSR 2936 broad.mit.edu 37 8 30536794 30536794 + 3'UTR DEL A - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSR 2936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 30538473 30538473 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSS 2937 broad.mit.edu 37 20 33530526 33530526 + Intron SNP A G G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSS 2937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33529582 33529582 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSTA2 2939 broad.mit.edu;hgsc.bcm.edu 37 6 52622679 52622679 + Silent SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSTA3 2940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52764776 52764776 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSTA3 2940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52764813 52764813 + Silent SNP T T C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSTA4 2941 hgsc.bcm.edu;ucsc.edu 37 6 52850359 52850361 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSTCD 79807 hgsc.bcm.edu 37 4 106638847 106638847 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSTCD 79807 hgsc.bcm.edu 37 4 106766678 106766678 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSTM1 2944 hgsc.bcm.edu 37 1 110233138 110233138 + Missense_Mutation SNP G G C rs74837985 by1000genomes TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSTM4 2948 broad.mit.edu 37 1 110198849 110198849 + 5'UTR SNP A C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSTM4 2948 broad.mit.edu 37 1 110199939 110199939 + Intron SNP C T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSTM5 2949 hgsc.bcm.edu 37 1 110257831 110257831 + Missense_Mutation SNP T T C rs67757008 unknown;alternate_allele TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GSTO1 9446 hgsc.bcm.edu 37 10 106022830 106022832 + In_Frame_Del DEL GAG GAG - rs72323784 bycluster;by1000genomes TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GSTO2 119391 broad.mit.edu 37 10 106059125 106059125 + 3'UTR SNP G A A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GSTT2B 653689 hgsc.bcm.edu 37 22 24300634 24300634 + Silent SNP G G T rs56104230 bycluster;byfrequency;by1000genomes TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTDC1 79712 hgsc.bcm.edu;ucsc.edu 37 2 144899563 144899564 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2A1 2957 broad.mit.edu 37 14 81676222 81676222 + Intron DEL G - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2A1 2957 broad.mit.edu;hgsc.bcm.edu 37 14 81659180 81659180 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2A1 2957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 81682787 81682787 + Silent SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2A1L 11036 hgsc.bcm.edu;ucsc.edu 37 2 48896938 48896938 + Silent SNP C C T rs144474589 bycluster;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2B 2959 broad.mit.edu 37 1 89318823 89318823 + 3'UTR DEL C - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2E1 2960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 120495384 120495384 + Silent SNP C C T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2E2 2961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 30492585 30492585 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2E2 2961 hgsc.bcm.edu 37 8 30436496 30436496 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2F1 2962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6381619 6381619 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2F2 2963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 45841372 45841372 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2H1 2965 broad.mit.edu;ucsc.edu 37 11 18357301 18357301 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2H1 2965 hgsc.bcm.edu 37 11 18359819 18359819 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2H2 2966 hgsc.bcm.edu 37 5 70343884 70343884 + Missense_Mutation SNP C C G rs162956 byfrequency TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2H2 2966 hgsc.bcm.edu 37 5 70351196 70351196 + Missense_Mutation SNP T T C rs2576895 byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2H2C 728340 broad.mit.edu 37 5 68878272 68878273 + Intron INS - A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2H5 404672 broad.mit.edu 37 6 158613375 158613375 + 3'UTR DEL A - - rs3841147 unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2H5 404672 broad.mit.edu 37 6 158618278 158618278 + 3'UTR SNP A C C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2I 2969 broad.mit.edu 37 7 74167453 74167453 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2I 2969 hgsc.bcm.edu 37 7 74149837 74149840 + Frame_Shift_Del DEL AAGA AAGA - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 AAGA AAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2I 2969 hgsc.bcm.edu;ucsc.edu 37 7 74129238 74129238 + Splice_Site SNP T T C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2IRD1 9569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73973274 73973274 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF2IRD1 9569 hgsc.bcm.edu;ucsc.edu 37 7 73959157 73959157 + Intron SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2IRD2B 389524 hgsc.bcm.edu 37 7 74563753 74563753 + Silent SNP G G A rs2529319 unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF2IRD2P1 401375 broad.mit.edu 37 7 72657208 72657208 + 3'UTR DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2IRD2P1 401375 broad.mit.edu 37 7 72664015 72664015 + 5'UTR SNP C G G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2IRD2P1 401375 broad.mit.edu 37 7 72664015 72664015 + 5'UTR SNP C G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2IRD2P1 401375 broad.mit.edu 37 7 72664015 72664016 + 5'UTR INS - G G rs11390048 unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2IRD2P1 401375 broad.mit.edu 37 7 72664015 72664016 + 5'UTR INS - G G rs11390048 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF2IRD2P1 401375 broad.mit.edu 37 7 72664019 72664020 + Translation_Start_Site INS - A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF3A 2971 broad.mit.edu 37 13 27997908 27997908 + 5'Flank SNP C A A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF3C1 2975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27497454 27497454 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF3C1 2975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27504025 27504025 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF3C1 2975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27523128 27523128 + Silent SNP T T C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF3C1 2975 hgsc.bcm.edu;ucsc.edu 37 16 27500985 27500986 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF3C1 2975 hgsc.bcm.edu;ucsc.edu 37 16 27504602 27504602 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTF3C2 2976 broad.mit.edu;ucsc.edu 37 2 27565792 27565792 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF3C2 2976 hgsc.bcm.edu;ucsc.edu 37 2 27550049 27550049 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF3C4 9329 broad.mit.edu 37 9 135555166 135555166 + Silent SNP A G G novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTF3C5 9328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135926204 135926204 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTF3C5 9328 hgsc.bcm.edu;ucsc.edu 37 9 135932247 135932247 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTPBP10 85865 hgsc.bcm.edu;ucsc.edu 37 7 89983809 89983809 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTPBP2 54676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43592645 43592645 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTPBP2 54676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43592732 43592732 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTPBP3 84705 broad.mit.edu;hgsc.bcm.edu 37 19 17448782 17448782 + Intron SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTPBP4 23560 broad.mit.edu 37 10 1042996 1042996 + Intron SNP T G G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTPBP5 26164 hgsc.bcm.edu;ucsc.edu 37 20 60774274 60774274 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTSE1 51512 broad.mit.edu 37 22 46725168 46725168 + Intron SNP C T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GTSE1 51512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46708174 46708174 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTSE1 51512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46712158 46712158 + Silent SNP C C A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTSE1 51512 hgsc.bcm.edu 37 22 46719127 46719127 + Silent SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GTSE1 51512 hgsc.bcm.edu;ucsc.edu 37 22 46725272 46725272 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTSF1 121355 hgsc.bcm.edu;ucsc.edu 37 12 54856986 54856986 + Silent SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GTSF1L 149699 hgsc.bcm.edu;ucsc.edu 37 20 42355035 42355035 + Silent SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUCA1B 2979 hgsc.bcm.edu;ucsc.edu 37 6 42156333 42156333 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUCA2A 2980 hgsc.bcm.edu;ucsc.edu 37 1 42629119 42629119 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUCY1A2 2977 hgsc.bcm.edu;ucsc.edu 37 11 106558323 106558323 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUCY1A3 2982 broad.mit.edu 37 4 156651536 156651539 + 3'UTR DEL ATGT - - rs3839146 bycluster;by1000genomes TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 ATGT ATGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUCY1A3 2982 broad.mit.edu 37 4 156651536 156651539 + 3'UTR DEL ATGT - - rs3839146 bycluster;by1000genomes TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 ATGT ATGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUCY1A3 2982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156632326 156632326 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUCY1A3 2982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156634339 156634339 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUCY1A3 2982 hgsc.bcm.edu 37 4 156653785 156653785 + Intron SNP A A T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUCY1B3 2983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156723600 156723600 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUCY2C 2984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14832651 14832651 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUCY2D 3000 broad.mit.edu;ucsc.edu 37 17 7909785 7909785 + Silent SNP T A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUCY2F 2986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 108636245 108636245 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GUCY2F 2986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 108691325 108691325 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUCY2F 2986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 108708503 108708503 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq GUF1 60558 broad.mit.edu 37 4 44680573 44680574 + 5'UTR INS - A A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUF1 60558 hgsc.bcm.edu 37 4 44700675 44700675 + Silent SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUK1 2987 broad.mit.edu 37 1 228329472 228329472 + Intron SNP C G G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUK1 2987 broad.mit.edu 37 1 228333457 228333458 + Intron INS - C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GULP1 51454 broad.mit.edu;hgsc.bcm.edu 37 2 189458666 189458666 + Splice_Site SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUSB 2990 broad.mit.edu 37 7 65425748 65425748 + 3'UTR SNP C T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUSB 2990 broad.mit.edu 37 7 65440854 65440854 + Intron DEL G - - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUSB 2990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 65439619 65439619 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GUSB 2990 broad.mit.edu;ucsc.edu 37 7 65439618 65439618 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GUSB 2990 hgsc.bcm.edu 37 7 65432870 65432870 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUSB 2990 hgsc.bcm.edu 37 7 65432870 65432870 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUSB 2990 hgsc.bcm.edu 37 7 65432873 65432873 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUSB 2990 hgsc.bcm.edu 37 7 65432873 65432873 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUSB 2990 hgsc.bcm.edu;ucsc.edu 37 7 65441161 65441161 + Silent SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GUSBP1 728411 broad.mit.edu 37 5 21459810 21459810 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GXYLT1 283464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42503369 42503369 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GXYLT1 283464 hgsc.bcm.edu 37 12 42512967 42512967 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GXYLT1 283464 hgsc.bcm.edu 37 12 42481609 42481609 + Silent SNP G G A rs112245628 unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GXYLT1 283464 hgsc.bcm.edu 37 12 42481609 42481609 + Silent SNP G G A rs112245628 unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GXYLT1 283464 hgsc.bcm.edu 37 12 42481617 42481617 + Missense_Mutation SNP G G C rs75740340 unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GXYLT1 283464 hgsc.bcm.edu 37 12 42491287 42491287 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GXYLT1 283464 hgsc.bcm.edu 37 12 42491289 42491289 + Silent SNP G G A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GXYLT1 283464 hgsc.bcm.edu 37 12 42491289 42491289 + Silent SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GYPA 2993 hgsc.bcm.edu 37 4 145038027 145038027 + Missense_Mutation SNP C C T rs146754148 bycluster;byfrequency;by1000genomes TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GYPB 2994 broad.mit.edu 37 4 144940457 144940457 + 5'UTR SNP G T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GYPC 2995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 127453643 127453643 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GYS1 2997 broad.mit.edu;ucsc.edu 37 19 49477487 49477487 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GYS2 2998 hgsc.bcm.edu;ucsc.edu 37 12 21699315 21699315 + Silent SNP T T A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GYS2 2998 hgsc.bcm.edu;ucsc.edu 37 12 21711188 21711188 + Silent SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GYS2 2998 hgsc.bcm.edu;ucsc.edu 37 12 21713365 21713365 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID GZF1 64412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23345603 23345603 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GZF1 64412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23347703 23347703 + Silent SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GZF1 64412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23350858 23350858 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq GZMH 2999 broad.mit.edu 37 14 25076508 25076508 + Silent SNP A C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx GZMK 3003 hgsc.bcm.edu;ucsc.edu 37 5 54326407 54326407 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H1F0 3005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38201647 38201647 + Silent SNP C C T rs151035348 unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H1F0 3005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38201974 38201974 + Silent SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H1FX 8971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129034182 129034182 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H2AFJ 55766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14927791 14927791 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H2AFV 94239 broad.mit.edu 37 7 44874056 44874056 + 3'UTR SNP A C C rs76655321 unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx H2AFV 94239 hgsc.bcm.edu 37 7 44874131 44874131 + Missense_Mutation SNP A A G rs114398265 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H2AFY2 55506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71835428 71835428 + Missense_Mutation SNP G G C novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H2AFY2 55506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71868913 71868913 + Silent SNP G G A rs41277966 bycluster;byfrequency;by1000genomes TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H2AFY 9555 broad.mit.edu 37 5 134680064 134680064 + Intron DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx H2AFZ 3015 broad.mit.edu 37 4 100871392 100871392 + 5'UTR SNP T C C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx H2AFZ 3015 hgsc.bcm.edu;ucsc.edu 37 4 100869967 100869967 + Splice_Site SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID H3F3C 440093 broad.mit.edu;hgsc.bcm.edu 37 12 31944927 31944927 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq H6PD 9563 broad.mit.edu 37 1 9326518 9326518 + 3'UTR DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HACE1 57531 broad.mit.edu;hgsc.bcm.edu 37 6 105177476 105177476 + 3'UTR SNP C C G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HACE1 57531 broad.mit.edu;hgsc.bcm.edu 37 6 105192486 105192486 + Splice_Site SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HACE1 57531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 105298826 105298826 + Silent SNP A A G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HACE1 57531 broad.mit.edu;ucsc.edu 37 6 105233140 105233140 + Nonsense_Mutation SNP C A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HACL1 26061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 15602349 15602349 + 3'UTR SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HACL1 26061 broad.mit.edu;ucsc.edu 37 3 15609989 15609989 + Silent SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HADH 3033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 108935617 108935617 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HADHA 3030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26435464 26435464 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HADHB 3032 broad.mit.edu;ucsc.edu 37 2 26502013 26502013 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HADHB 3032 hgsc.bcm.edu;ucsc.edu 37 2 26505782 26505782 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAGH 3029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1866929 1866929 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAGH 3029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1866933 1866933 + Silent SNP G G A novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAND1 9421 hgsc.bcm.edu 37 5 153857038 153857038 + Silent SNP C C G rs34198899 bycluster;byfrequency;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAND2 9464 broad.mit.edu 37 4 174448290 174448290 + 3'UTR SNP A T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HAO2 51179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 119923771 119923771 + Silent SNP T T C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAP1 9001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39884564 39884564 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAP1 9001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39889026 39889026 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAP1 9001 hgsc.bcm.edu;ucsc.edu 37 17 39882155 39882155 + Intron SNP A A T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAPLN1 1404 broad.mit.edu;hgsc.bcm.edu 37 5 82940357 82940357 + Silent SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAPLN1 1404 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82948369 82948369 + Silent SNP G G T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAPLN1 1404 hgsc.bcm.edu 37 5 82937598 82937598 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HARBI1 283254 hgsc.bcm.edu;ucsc.edu 37 11 46625224 46625224 + Silent SNP G G A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HARS2 23438 hgsc.bcm.edu;ucsc.edu 37 5 140076951 140076951 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HARS 3035 hgsc.bcm.edu;ucsc.edu 37 5 140057269 140057269 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAS1 3036 broad.mit.edu 37 19 52216712 52216712 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HAS3 3038 broad.mit.edu;hgsc.bcm.edu 37 16 69149149 69149149 + Silent SNP T T C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAT1 8520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 172821890 172821890 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS1 115106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43700027 43700027 + Splice_Site SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS1 115106 hgsc.bcm.edu;ucsc.edu 37 18 43708041 43708041 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAUS4 54930 hgsc.bcm.edu;ucsc.edu 37 14 23421803 23421806 + Frame_Shift_Del DEL GTGA GTGA - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 GTGA GTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS6 54801 broad.mit.edu 37 9 19056114 19056114 + 3'UTR SNP G T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HAUS6 54801 hgsc.bcm.edu 37 9 19063108 19063108 + Silent SNP T T C rs61740790 byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS6 54801 hgsc.bcm.edu 37 9 19063509 19063509 + Intron SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAUS6 54801 hgsc.bcm.edu;ucsc.edu 37 9 19058758 19058759 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAUS7 55559 broad.mit.edu 37 X 152713268 152713268 + 3'UTR SNP C T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HAUS7 55559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152719888 152719888 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS7 55559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152720472 152720472 + Intron SNP T T A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS7 55559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152721103 152721103 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAUS8 93323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17169444 17169444 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAVCR2 84868 broad.mit.edu;hgsc.bcm.edu 37 5 156536031 156536031 + 5'UTR SNP T T G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HAVCR2 84868 hgsc.bcm.edu;ucsc.edu 37 5 156514240 156514240 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HAX1 10456 hgsc.bcm.edu;ucsc.edu 37 1 154247938 154247938 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HBA2 3040 broad.mit.edu 37 16 223707 223707 + 3'UTR SNP G C C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBB 3043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5247899 5247899 + Missense_Mutation SNP C C A rs121909804 unknown;alternate_allele TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HBB 3043 hgsc.bcm.edu 37 11 5247865 5247865 + Missense_Mutation SNP A A C rs35693898 bycluster;alternate_allele TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HBB 3043 hgsc.bcm.edu 37 11 5247865 5247865 + Missense_Mutation SNP A A C rs35693898 bycluster;alternate_allele TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HBE1 3046 broad.mit.edu 37 11 5291073 5291073 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBG1 3047 broad.mit.edu 37 11 5269511 5269511 + 3'UTR SNP C T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBG1 3047 broad.mit.edu 37 11 5269511 5269511 + 3'UTR SNP C T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBG1 3047 hgsc.bcm.edu 37 11 5271024 5271024 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HBG2 3048 broad.mit.edu;hgsc.bcm.edu 37 11 5274476 5274476 + 3'UTR SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HBG2 3048 hgsc.bcm.edu 37 11 5275948 5275948 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HBP1 26959 broad.mit.edu 37 7 106841613 106841613 + Intron SNP A G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBS1L 10767 broad.mit.edu 37 6 135357536 135357536 + Intron DEL A - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBS1L 10767 broad.mit.edu 37 6 135357649 135357649 + Intron DEL T - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HBS1L 10767 hgsc.bcm.edu 37 6 135300385 135300385 + Missense_Mutation SNP G G C rs145782441 unknown;alternate_allele TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HBXIP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110948984 110948984 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HBZ 3050 hgsc.bcm.edu 37 16 203950 203951 + Frame_Shift_Ins INS - - GTCC novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCCS 3052 broad.mit.edu 37 X 11130140 11130140 + 5'UTR SNP T G G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCCS 3052 broad.mit.edu 37 X 11130140 11130140 + 5'UTR SNP T G G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCCS 3052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 11139773 11139773 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCFC1 3054 broad.mit.edu 37 X 153214721 153214721 + 3'UTR SNP T G G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCFC1 3054 broad.mit.edu 37 X 153222975 153222975 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCFC1 3054 broad.mit.edu 37 X 153236256 153236256 + Silent SNP C A A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCFC1 3054 broad.mit.edu;ucsc.edu 37 X 153215018 153215018 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCFC1 3054 hgsc.bcm.edu 37 X 153215992 153215992 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCFC1 3054 hgsc.bcm.edu 37 X 153222971 153222972 + Frame_Shift_Ins INS - - G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCFC1 3054 hgsc.bcm.edu 37 X 153236183 153236183 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCFC2 29915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104476292 104476293 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCFC2 29915 hgsc.bcm.edu;ucsc.edu 37 12 104461864 104461864 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCFC2 29915 hgsc.bcm.edu;ucsc.edu 37 12 104476286 104476286 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCG4 54435 broad.mit.edu 37 6 29760353 29760373 + RNA DEL GCGGGCGCCGTGGATGGAGCA - - rs140982245 bycluster;by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 GCGGGCGCCGTGGATGGAGCA GCGGGCGCCGTGGATGGAGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCG4 54435 broad.mit.edu 37 6 29761770 29761770 + 5'Flank DEL G - - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCK 3055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30671834 30671834 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HCK 3055 hgsc.bcm.edu;ucsc.edu 37 20 30676371 30676371 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCLS1 3059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121366274 121366274 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCN1 348980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 45262062 45262062 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCN1 348980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 45262590 45262590 + Silent SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCN2 610 hgsc.bcm.edu 37 19 603874 603874 + Silent SNP C C T rs55780677 bycluster;byfrequency;by1000genomes TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCN2 610 hgsc.bcm.edu 37 19 605090 605090 + Silent SNP C C T rs56279131 bycluster;byfrequency;by1000genomes TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCN3 57657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155252388 155252388 + Silent SNP T T C rs140564885 unknown;alternate_allele TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCN3 57657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155254427 155254427 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCN3 57657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155256981 155256981 + Silent SNP A A C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCN3 57657 hgsc.bcm.edu;ucsc.edu 37 1 155256964 155256964 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HCN4 10021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73616205 73616205 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HCRTR2 3062 broad.mit.edu 37 6 55147362 55147362 + 3'UTR DEL T - - rs112521597 unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCRTR2 3062 broad.mit.edu 37 6 55147362 55147362 + 3'UTR DEL T - - rs112521597 unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCRTR2 3062 broad.mit.edu 37 6 55147362 55147362 + 3'UTR DEL T - - rs112521597 unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HCRTR2 3062 broad.mit.edu;hgsc.bcm.edu 37 6 55128616 55128616 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC10 83933 broad.mit.edu 37 22 50689480 50689480 + Translation_Start_Site SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC10 83933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50685358 50685358 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC10 83933 hgsc.bcm.edu 37 22 50685379 50685379 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC11 79885 hgsc.bcm.edu;ucsc.edu 37 3 13522780 13522780 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC1 3065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32782361 32782361 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC1 3065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32796451 32796451 + Silent SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC1 3065 hgsc.bcm.edu;ucsc.edu 37 1 32797118 32797118 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC2(dist=40056) 0 hgsc.bcm.edu;ucsc.edu 37 6 114332415 114332415 + IGR SNP A A T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC3 8841 broad.mit.edu 37 5 141014600 141014600 + Intron SNP C A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC4 9759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 240111615 240111615 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC4 9759 hgsc.bcm.edu 37 2 240011717 240011717 + Silent SNP T T C rs61752234 bycluster;byfrequency;by1000genomes TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC5 10014 broad.mit.edu 37 17 42162541 42162541 + Intron SNP G T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC6 10013 broad.mit.edu 37 X 48664966 48664966 + Intron SNP A G G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC6 10013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48674573 48674573 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC6 10013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48674583 48674583 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC6 10013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48681371 48681371 + Silent SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC6 10013 hgsc.bcm.edu 37 X 48681739 48681739 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC6 10013 hgsc.bcm.edu 37 X 48681739 48681739 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDAC6 10013 hgsc.bcm.edu;ucsc.edu 37 X 48674608 48674608 + Silent SNP C C T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDAC7 51564 broad.mit.edu 37 12 48176607 48176608 + 3'UTR DEL AC - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC7 51564 broad.mit.edu 37 12 48176636 48176637 + 3'UTR INS - CCTCA CCTCA rs68189727 unknown;alternate_allele TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC7 51564 broad.mit.edu 37 12 48176656 48176657 + 3'UTR DEL CA - - rs67892211 bycluster;by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC7 51564 broad.mit.edu 37 12 48176656 48176657 + 3'UTR DEL CA - - rs67892211 bycluster;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC7 51564 broad.mit.edu 37 12 48179316 48179316 + 3'UTR SNP A C C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC7 51564 broad.mit.edu;ucsc.edu 37 12 48185052 48185052 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC8 55869 broad.mit.edu 37 X 71549387 71549387 + 3'UTR DEL A - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDAC9 9734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 18625053 18625053 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HDAC9 9734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 18688092 18688092 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HDGFL1 154150 broad.mit.edu 37 6 22569747 22569747 + 5'UTR SNP C T T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDGFL1 154150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 22569865 22569865 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDHD1 8226 hgsc.bcm.edu;ucsc.edu 37 X 7035035 7035035 + Silent SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDHD1A 0 broad.mit.edu 37 X 6968145 6968145 + 3'UTR DEL G - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDHD3 81932 broad.mit.edu 37 9 116135769 116135769 + 3'UTR DEL G - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDLBP 3069 broad.mit.edu 37 2 242167639 242167639 + 3'UTR DEL C - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDLBP 3069 broad.mit.edu 37 2 242168842 242168842 + 3'UTR SNP C A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDLBP 3069 broad.mit.edu 37 2 242168842 242168842 + 3'UTR SNP C A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDLBP 3069 broad.mit.edu 37 2 242168842 242168842 + 3'UTR SNP C A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDLBP 3069 broad.mit.edu 37 2 242168842 242168842 + 3'UTR SNP C A A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDLBP 3069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242179325 242179325 + Silent SNP G G A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HDLBP 3069 hgsc.bcm.edu;ucsc.edu 37 2 242179477 242179477 + Missense_Mutation SNP C C T rs143103039 unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDLBP 3069 hgsc.bcm.edu;ucsc.edu 37 2 242203956 242203956 + Silent SNP A A C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HDX 139324 broad.mit.edu 37 X 83576744 83576744 + 3'UTR SNP C A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HDX 139324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 83724059 83724059 + Silent SNP T T C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR1 55127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236740185 236740185 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR1 55127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236766491 236766491 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR1 55127 hgsc.bcm.edu;ucsc.edu 37 1 236714231 236714231 + Missense_Mutation SNP G G C rs145439234 unknown;alternate_allele TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEATR2 54919 broad.mit.edu 37 7 811592 811592 + Intron DEL T - - rs140362400 unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR2 54919 broad.mit.edu;ucsc.edu 37 7 780466 780466 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR3 55027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50120249 50120249 + Silent SNP T T G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR4 399671 broad.mit.edu 37 14 73945690 73945690 + Intron SNP C G G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR4 399671 broad.mit.edu 37 14 73989820 73989820 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR5A 25938 broad.mit.edu 37 14 31926626 31926626 + 5'UTR SNP A G G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR5A 25938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31817065 31817065 + Silent SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR5A 25938 hgsc.bcm.edu 37 14 31852794 31852794 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEATR5A 25938 hgsc.bcm.edu;ucsc.edu 37 14 31819067 31819067 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEATR5B 54497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37255866 37255866 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR5B 54497 hgsc.bcm.edu 37 2 37283587 37283587 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEATR5B 54497 hgsc.bcm.edu 37 2 37297442 37297442 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEATR6 63897 broad.mit.edu 37 17 58120625 58120625 + 3'UTR DEL T - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR6 63897 broad.mit.edu 37 17 58156289 58156289 + 5'UTR DEL G - - rs28372737 unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEATR6 63897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58137396 58137396 + Missense_Mutation SNP G G C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145275539 145275539 + Missense_Mutation SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7B2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41012760 41012760 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7B2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41045851 41045851 + Silent SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7B2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41064635 41064635 + Silent SNP G G T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7B2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41065513 41065513 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7B2 0 hgsc.bcm.edu 37 5 41039597 41039597 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEATR7B2 0 hgsc.bcm.edu 37 5 41052635 41052635 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEATR7B2 0 hgsc.bcm.edu;ucsc.edu 37 5 41000336 41000336 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEBP1 50865 broad.mit.edu 37 12 13140039 13140039 + Intron SNP C G G rs190229744 by1000genomes;alternate_allele TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEBP2 23593 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 138734184 138734184 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD1 25831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31576011 31576011 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD1 25831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31613394 31613394 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD1 25831 hgsc.bcm.edu 37 14 31626470 31626470 + Silent SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HECTD2 143279 broad.mit.edu 37 10 93221997 93221997 + Intron SNP G C C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HECTD2 143279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93220253 93220253 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD2 143279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93258806 93258806 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD2 143279 hgsc.bcm.edu 37 10 93185116 93185116 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HECTD3 79654 broad.mit.edu;hgsc.bcm.edu 37 1 45476654 45476654 + Silent SNP G G C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD3 79654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45471468 45471468 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECTD3 79654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45473182 45473182 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW1 23072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43400541 43400541 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW1 23072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43484071 43484071 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW1 23072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43503283 43503283 + Silent SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW1 23072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43548639 43548639 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW1 23072 hgsc.bcm.edu 37 7 43484310 43484310 + Silent SNP T T C rs73098706 bycluster;by1000genomes TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HECW1 23072 hgsc.bcm.edu;ucsc.edu 37 7 43351595 43351595 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW1 23072 hgsc.bcm.edu;ucsc.edu 37 7 43531769 43531769 + Silent SNP A A G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HECW2 57520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197184155 197184155 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW2 57520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197184391 197184391 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HECW2 57520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197194348 197194348 + Silent SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELB 92797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 66731858 66731858 + Silent SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELB 92797 hgsc.bcm.edu;ucsc.edu 37 12 66716493 66716493 + Intron SNP G G C rs148383408 by1000genomes;alternate_allele TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELLS 3070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96350261 96350261 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELLS 3070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96352150 96352150 + Splice_Site SNP A A T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELLS 3070 hgsc.bcm.edu;ucsc.edu 37 10 96354517 96354517 + Silent SNP T T G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HELQ 113510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 84374451 84374451 + Silent SNP A A C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELQ 113510 hgsc.bcm.edu 37 4 84350864 84350864 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HELQ 113510 hgsc.bcm.edu 37 4 84376821 84376821 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HELQ 113510 hgsc.bcm.edu;ucsc.edu 37 4 84362515 84362515 + Nonsense_Mutation SNP A A C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HELZ 9931 broad.mit.edu 37 17 65124612 65124612 + Intron SNP T G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HELZ 9931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65184580 65184580 + Silent SNP T T C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HELZ 9931 broad.mit.edu;ucsc.edu 37 17 65141857 65141857 + Splice_Site SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HELZ 9931 hgsc.bcm.edu 37 17 65119196 65119196 + Silent SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HELZ 9931 hgsc.bcm.edu;ucsc.edu 37 17 65110477 65110477 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEMGN 55363 broad.mit.edu;ucsc.edu 37 9 100693156 100693156 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEMGN 55363 hgsc.bcm.edu;ucsc.edu 37 9 100693494 100693494 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEMK1 51409 broad.mit.edu 37 3 50617926 50617926 + 3'UTR SNP G A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEPACAM 220296 hgsc.bcm.edu;ucsc.edu 37 11 124792312 124792312 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEPACAM2 253012 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92844896 92844896 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEPH 9843 hgsc.bcm.edu 37 X 65393494 65393495 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEPHL1 341208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93779079 93779079 + Silent SNP A A C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEPHL1 341208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93797666 93797666 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEPHL1 341208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93836116 93836116 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEPHL1 341208 hgsc.bcm.edu 37 11 93754553 93754553 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC1 8925 broad.mit.edu 37 15 63944712 63944712 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HERC1 8925 broad.mit.edu;hgsc.bcm.edu 37 15 64045102 64045102 + Intron SNP G G C rs190434109 by1000genomes;alternate_allele TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63915942 63915942 + Silent SNP G G T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63948032 63948032 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63950916 63950916 + Silent SNP A A T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63970224 63970224 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 hgsc.bcm.edu 37 15 63932415 63932415 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC1 8925 hgsc.bcm.edu;ucsc.edu 37 15 63930676 63930676 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 hgsc.bcm.edu;ucsc.edu 37 15 63955309 63955310 + Frame_Shift_Ins INS - - TT novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC1 8925 hgsc.bcm.edu;ucsc.edu 37 15 64005044 64005044 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC1 8925 hgsc.bcm.edu;ucsc.edu 37 15 64005710 64005710 + Silent SNP C C T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC2 8924 broad.mit.edu;hgsc.bcm.edu 37 15 28387457 28387457 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC2 8924 broad.mit.edu;hgsc.bcm.edu 37 15 28499508 28499508 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC2 8924 broad.mit.edu;hgsc.bcm.edu 37 15 28515959 28515959 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HERC2 8924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28436294 28436294 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HERC2 8924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28473477 28473477 + Missense_Mutation SNP C C A rs149550128 unknown;alternate_allele TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC2 8924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28501377 28501377 + Silent SNP C C T rs139718674 by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC2 8924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28514431 28514431 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HERC2 8924 broad.mit.edu;ucsc.edu 37 15 28446698 28446698 + Silent SNP A G G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HERC2 8924 hgsc.bcm.edu 37 15 28366558 28366558 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC2 8924 hgsc.bcm.edu;ucsc.edu 37 15 28414709 28414709 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID HERC2 8924 hgsc.bcm.edu;ucsc.edu 37 15 28414719 28414719 + Silent SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID HERC2 8924 hgsc.bcm.edu;ucsc.edu 37 15 28420762 28420762 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC2P2 400322 broad.mit.edu 37 15 23312056 23312056 + 3'UTR SNP A G G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HERC2P2 400322 broad.mit.edu 37 15 23326128 23326128 + Frame_Shift_Del DEL A - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HERC2P2 400322 broad.mit.edu 37 15 23335621 23335621 + Silent SNP C T T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HERC2P4 440362 broad.mit.edu 37 16 32163812 32163812 + RNA SNP G T T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HERC3 8916 broad.mit.edu;hgsc.bcm.edu 37 4 89628115 89628115 + 3'UTR SNP T T A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC3 8916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 89577067 89577067 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC3 8916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 89607937 89607937 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC3 8916 hgsc.bcm.edu;ucsc.edu 37 4 89583638 89583638 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HERC4 26091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69797906 69797908 + In_Frame_Del DEL TCT TCT - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC5 51191 broad.mit.edu;hgsc.bcm.edu 37 4 89425491 89425491 + Silent SNP C C T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERC5 51191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 89385020 89385020 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERPUD1 9709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56974151 56974151 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERPUD2 64224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 35673462 35673462 + Splice_Site SNP C C T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERPUD2 64224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 35678058 35678058 + Silent SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HERPUD2 64224 hgsc.bcm.edu 37 7 35712843 35712843 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HES1 3280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193854202 193854202 + Silent SNP G G A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEXA 3073 broad.mit.edu 37 15 72642743 72642743 + Intron SNP G C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXA 3073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72640389 72640389 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEXA 3073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72642868 72642868 + Missense_Mutation SNP A A C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEXA 3073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72645420 72645420 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEXA 3073 hgsc.bcm.edu;ucsc.edu 37 15 72636407 72636407 + 3'UTR SNP G G A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEXB 3074 broad.mit.edu;hgsc.bcm.edu 37 5 74001196 74001196 + Intron SNP A A C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEXDC 284004 broad.mit.edu 37 17 80397737 80397738 + Intron DEL CA - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXDC 284004 broad.mit.edu 37 17 80400154 80400154 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXDC 284004 broad.mit.edu 37 17 80400154 80400154 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXDC 284004 broad.mit.edu;ucsc.edu 37 17 80394586 80394586 + Silent SNP C T T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXDC 284004 hgsc.bcm.edu 37 17 80391635 80391635 + Silent SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEXDC 284004 hgsc.bcm.edu 37 17 80399717 80399717 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HEXIM1 10614 broad.mit.edu 37 17 43226413 43226413 + 5'UTR DEL A - - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXIM1 10614 broad.mit.edu 37 17 43226612 43226612 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEXIM1 10614 broad.mit.edu;hgsc.bcm.edu 37 17 43226528 43226528 + 5'UTR SNP A A C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEY1 23462 broad.mit.edu 37 8 80676259 80676259 + 3'UTR DEL T - - rs11336222 bycluster TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HEY1 23462 broad.mit.edu;hgsc.bcm.edu 37 8 80678002 80678002 + Silent SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEY1 23462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 80677934 80677934 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HEY2 23493 broad.mit.edu 37 6 126081127 126081127 + 3'UTR DEL T - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HFE 3077 broad.mit.edu 37 6 26094575 26094575 + 3'UTR SNP G A A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HFE 3077 broad.mit.edu 37 6 26094670 26094671 + 3'UTR INS - TG TG novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HFM1 164045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 91818686 91818686 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HFM1 164045 hgsc.bcm.edu 37 1 91726880 91726880 + Silent SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HFM1 164045 hgsc.bcm.edu;ucsc.edu 37 1 91840948 91840948 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HGC6.3 100128124 broad.mit.edu 37 6 168376847 168376847 + Silent SNP C G G rs77867907 bycluster TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168376953 168376953 + Missense_Mutation SNP A C C rs2516607 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377019 168377019 + Missense_Mutation SNP A G G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377022 168377022 + Missense_Mutation SNP A G G rs112006230 unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377071 168377071 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377071 168377071 + Missense_Mutation SNP G A A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377094 168377094 + Missense_Mutation SNP G A A rs9364375 bycluster;by2hit2allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377119 168377119 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377135 168377135 + Silent SNP T C C rs75642682 unknown;alternate_allele TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377135 168377135 + Silent SNP T C C rs75642682 unknown;alternate_allele TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377136 168377136 + Missense_Mutation SNP T G G rs77639335 unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 broad.mit.edu 37 6 168377220 168377220 + Missense_Mutation SNP T G G rs79173693 by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGC6.3 100128124 hgsc.bcm.edu 37 6 168376840 168376840 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376847 168376847 + Silent SNP C C G rs77867907 bycluster TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HGC6.3 100128124 hgsc.bcm.edu 37 6 168376847 168376847 + Silent SNP C C G rs77867907 bycluster TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HGC6.3 100128124 hgsc.bcm.edu 37 6 168376866 168376866 + Missense_Mutation SNP T T C rs71305249 unknown;alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376866 168376866 + Missense_Mutation SNP T T C rs71305249 unknown;alternate_allele TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HGC6.3 100128124 hgsc.bcm.edu 37 6 168376869 168376869 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376925 168376926 + Frame_Shift_Ins INS - - T rs35001101 bycluster;by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376925 168376926 + Frame_Shift_Ins INS - - T rs35001101 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376930 168376971 + In_Frame_Del DEL AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG - rs72123553 unknown;alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376967 168376968 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376967 168376968 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376968 168376969 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168376968 168376969 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168377071 168377071 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168377092 168377092 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168377119 168377119 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu 37 6 168377220 168377220 + Missense_Mutation SNP T T A rs79173693 by1000genomes;alternate_allele TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGC6.3 100128124 hgsc.bcm.edu;ucsc.edu 37 6 168376831 168376832 + Frame_Shift_Del DEL GT GT - rs142011748 bycluster;by1000genomes TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HGD 3081 broad.mit.edu;hgsc.bcm.edu 37 3 120369637 120369637 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGF 3082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 81346622 81346622 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGFAC 3083 broad.mit.edu;ucsc.edu 37 4 3446996 3446996 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HGFAC 3083 hgsc.bcm.edu 37 4 3444511 3444511 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HGS 9146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79652641 79652641 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGS 9146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79667601 79667601 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HGSNAT 138050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 43002122 43002122 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HHAT 55733 hgsc.bcm.edu 37 1 210761285 210761285 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HHAT 55733 hgsc.bcm.edu;ucsc.edu 37 1 210573841 210573841 + Silent SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HHATL 57467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42734320 42734320 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHEX 3087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94454334 94454334 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHIP 64399 broad.mit.edu 37 4 145568088 145568088 + Silent SNP A C C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HHIP 64399 broad.mit.edu;hgsc.bcm.edu 37 4 145655993 145655993 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHIP 64399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 145635414 145635414 + Silent SNP T T C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHIP 64399 hgsc.bcm.edu 37 4 145580833 145580833 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HHIPL1 84439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100129224 100129224 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHIPL2 79802 broad.mit.edu 37 1 222695889 222695889 + 3'UTR SNP G C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HHIPL2 79802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222705449 222705449 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHIPL2 79802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222717069 222717069 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHIPL2 79802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222721137 222721137 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HHLA1 10086 hgsc.bcm.edu;ucsc.edu 37 8 133111178 133111178 + Silent SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HHLA2 11148 hgsc.bcm.edu 37 3 108081191 108081195 + Frame_Shift_Del DEL CCGAG CCGAG - novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CCGAG CCGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIAT1 64645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100503796 100503796 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIAT1 64645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100546150 100546150 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIAT1 64645 hgsc.bcm.edu;ucsc.edu 37 1 100503799 100503799 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIATL1 84641 broad.mit.edu 37 9 97221855 97221855 + 3'UTR DEL T - - rs147204504 unknown;alternate_allele TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIATL1 84641 broad.mit.edu 37 9 97221855 97221855 + 3'UTR DEL T - - rs147204504 unknown;alternate_allele TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIATL1 84641 broad.mit.edu 37 9 97221855 97221855 + 3'UTR DEL T - - rs147204504 unknown;alternate_allele TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIBADH 11112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 27570888 27570888 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIC1 3090 broad.mit.edu;ucsc.edu 37 17 1961130 1961130 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIC2 23119 hgsc.bcm.edu 37 22 21800836 21800836 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIF1A 3091 broad.mit.edu;hgsc.bcm.edu 37 14 62211422 62211422 + Splice_Site SNP G G C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HIF1A 3091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 62187224 62187224 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIF1A 3091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 62200986 62200986 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HIF3A 64344 broad.mit.edu 37 19 46811988 46811988 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIF3A 64344 broad.mit.edu;hgsc.bcm.edu 37 19 46815932 46815932 + Intron SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIF3A 64344 hgsc.bcm.edu 37 19 46806952 46806952 + Splice_Region SNP C C A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIF3A 64344 hgsc.bcm.edu 37 19 46828841 46828841 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIGD1B 51751 broad.mit.edu 37 17 42925468 42925468 + 5'UTR SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIGD1C 613227 hgsc.bcm.edu 37 12 51354786 51354786 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HINFP 25988 broad.mit.edu 37 11 119003024 119003024 + Intron SNP G T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HINFP 25988 hgsc.bcm.edu 37 11 119005189 119005189 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HINT2 84681 hgsc.bcm.edu;ucsc.edu 37 9 35813449 35813451 + In_Frame_Del DEL TCT TCT - novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HINT3 135114 broad.mit.edu 37 6 126299112 126299112 + 3'UTR DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIP1 3092 broad.mit.edu 37 7 75167431 75167431 + 3'UTR SNP A G G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIP1 3092 broad.mit.edu 37 7 75182782 75182782 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIP1 3092 broad.mit.edu;hgsc.bcm.edu 37 7 75168737 75168737 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIP1R 9026 broad.mit.edu 37 12 123343650 123343650 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIP1R 9026 broad.mit.edu 37 12 123343703 123343703 + Silent SNP C T T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIP1R 9026 broad.mit.edu 37 12 123345228 123345228 + Missense_Mutation SNP A G G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIP1R 9026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123340840 123340840 + Silent SNP G G C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIP1R 9026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123340841 123340841 + Nonsense_Mutation SNP A A T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIP1R 9026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123343990 123343990 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIP1R 9026 hgsc.bcm.edu 37 12 123340365 123340365 + Intron SNP C C A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIP1R 9026 hgsc.bcm.edu 37 12 123340455 123340455 + Splice_Region SNP G G C rs76040127 bycluster TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIP1R 9026 hgsc.bcm.edu 37 12 123344692 123344692 + Intron SNP C C A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIPK1 204851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114483183 114483183 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIPK2 28996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139281488 139281488 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HIPK2 28996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139415959 139415959 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HIPK3 10114 broad.mit.edu;hgsc.bcm.edu 37 11 33375165 33375165 + 3'UTR SNP A A G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIPK3 10114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33308096 33308096 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIPK3 10114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33363111 33363111 + Silent SNP A A G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIRIP3 8479 broad.mit.edu;hgsc.bcm.edu 37 16 30006027 30006027 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIRIP3 8479 broad.mit.edu;hgsc.bcm.edu 37 16 30006455 30006455 + Silent SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H1A 3024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26017495 26017495 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H1A 3024 hgsc.bcm.edu 37 6 26017707 26017707 + Missense_Mutation SNP A A G rs150074424 unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIST1H1C 3006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26056217 26056217 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H1C 3006 hgsc.bcm.edu 37 6 26056015 26056015 + Silent SNP C C T rs11540003 unknown;alternate_allele TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIST1H1C 3006 hgsc.bcm.edu;ucsc.edu 37 6 26056471 26056471 + Silent SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIST1H1D 3007 broad.mit.edu;hgsc.bcm.edu 37 6 26234451 26234451 + 3'UTR SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2AH 85235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27115055 27115055 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2AJ 8331 broad.mit.edu 37 6 27782408 27782408 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIST1H2AK 8330 broad.mit.edu 37 6 27805883 27805883 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIST1H2AM 8336 broad.mit.edu 37 6 27860940 27860940 + 5'UTR SNP T C C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIST1H2AM 8336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27860781 27860781 + Silent SNP C C G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2BC 8347 hgsc.bcm.edu 37 6 26124127 26124127 + Silent SNP A A G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2BD 3017 hgsc.bcm.edu 37 6 26158751 26158751 + Silent SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIST1H2BJ 8970 broad.mit.edu;hgsc.bcm.edu 37 6 27100432 27100432 + Missense_Mutation SNP C C T rs137867381 unknown;alternate_allele TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2BM 8342 hgsc.bcm.edu;ucsc.edu 37 6 27782814 27782832 + Frame_Shift_Del DEL TTTCCACCATGCCTGAACC TTTCCACCATGCCTGAACC - novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 TTTCCACCATGCCTGAACC TTTCCACCATGCCTGAACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2BM 8342 hgsc.bcm.edu;ucsc.edu 37 6 27782975 27782975 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H2BO 8348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27861305 27861305 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H3H 8357 hgsc.bcm.edu;ucsc.edu 37 6 27778219 27778219 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIST1H3I 8354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27839911 27839911 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H3J 8356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27858524 27858524 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H4E 8367 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26205069 26205069 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H4H 8365 broad.mit.edu;hgsc.bcm.edu 37 6 26285406 26285406 + 3'UTR SNP A A G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST1H4H 8365 hgsc.bcm.edu;ucsc.edu 37 6 26285450 26285450 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIST2H2AB 317772 broad.mit.edu 37 1 149859428 149859428 + Silent SNP A G G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIST2H2AB 317772 hgsc.bcm.edu 37 1 149859101 149859101 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST2H2AB 317772 hgsc.bcm.edu;ucsc.edu 37 1 149859184 149859185 + Frame_Shift_Del INS - - CA novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST2H2AC 8338 broad.mit.edu;hgsc.bcm.edu 37 1 149858593 149858593 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST2H2AC 8338 hgsc.bcm.edu 37 1 149858563 149858563 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST2H2BE 8349 hgsc.bcm.edu 37 1 149857934 149857936 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST2H2BF 440689 broad.mit.edu 37 1 149398908 149398908 + RNA SNP G C C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIST2H3D 653604 broad.mit.edu;hgsc.bcm.edu 37 1 149785229 149785229 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST4H4 121504 broad.mit.edu;hgsc.bcm.edu 37 12 14924038 14924038 + 5'UTR SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST4H4 121504 broad.mit.edu;hgsc.bcm.edu 37 12 14924041 14924041 + 5'UTR SNP A A G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIST4H4 121504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14923794 14923794 + Silent SNP C C T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP1 3096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12120167 12120167 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP1 3096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12123871 12123871 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP1 3096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12125187 12125187 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP1 3096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12164030 12164030 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP1 3096 hgsc.bcm.edu;ucsc.edu 37 6 12161803 12161803 + Frame_Shift_Del DEL C C - rs34103769 unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP2 3097 broad.mit.edu 37 6 143093080 143093080 + Silent SNP C T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIVEP2 3097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 143081369 143081369 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP2 3097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 143094139 143094139 + Silent SNP T T A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP2 3097 broad.mit.edu;ucsc.edu 37 6 143081503 143081503 + Silent SNP A G G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIVEP2 3097 hgsc.bcm.edu;ucsc.edu 37 6 143091371 143091371 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HIVEP3 59269 broad.mit.edu 37 1 41976454 41976454 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HIVEP3 59269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 42045713 42045713 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP3 59269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 42049239 42049239 + Silent SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HIVEP3 59269 hgsc.bcm.edu;ucsc.edu 37 1 42045820 42045821 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HJURP 55355 broad.mit.edu 37 2 234745932 234745935 + 3'UTR DEL AAAC - - rs150635580 bycluster;by1000genomes;alternate_allele TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 AAAC AAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HJURP 55355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234749785 234749785 + Silent SNP A A G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HJURP 55355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234749963 234749963 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HJURP 55355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234754423 234754423 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HK1 3098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71103744 71103744 + Silent SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HK1 3098 hgsc.bcm.edu 37 10 71048514 71048514 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HK1 3098 hgsc.bcm.edu 37 10 71146158 71146158 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HK1 3098 hgsc.bcm.edu;ucsc.edu 37 10 71139760 71139760 + Missense_Mutation SNP G G A rs140290094 byfrequency TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HK1 3098 hgsc.bcm.edu;ucsc.edu 37 10 71144134 71144134 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HK1 3098 hgsc.bcm.edu 37 10 71060621 71060621 + Intron SNP C C A rs1108272 bycluster;by2hit2allele;by1000genomes;alternate_allele TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HK2 3099 broad.mit.edu;ucsc.edu 37 2 75107668 75107668 + Silent SNP C T T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HK3 3101 hgsc.bcm.edu 37 5 176308431 176308431 + Silent SNP G G T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HKR1 284459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37853658 37853658 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HKR1 284459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37854193 37854193 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 broad.mit.edu 37 6 29910607 29910607 + Silent SNP G C C rs72555397 unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-A 3105 broad.mit.edu 37 6 29913374 29913374 + 3'UTR DEL C - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-A 3105 hgsc.bcm.edu 37 6 29910622 29910622 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 hgsc.bcm.edu 37 6 29910622 29910622 + Silent SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 hgsc.bcm.edu 37 6 29910663 29910663 + Missense_Mutation SNP G G A rs74655243 unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-A 3105 hgsc.bcm.edu 37 6 29910699 29910699 + Missense_Mutation SNP G G A rs1059451 byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 hgsc.bcm.edu 37 6 29911271 29911271 + Missense_Mutation SNP G G C rs74914698 unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 hgsc.bcm.edu 37 6 29912029 29912029 + Frame_Shift_Del DEL G G - rs149455102 bycluster;by1000genomes TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 hgsc.bcm.edu 37 6 29912451 29912451 + Intron SNP C C A rs9260193 bycluster TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-A 3105 hgsc.bcm.edu 37 6 29913070 29913070 + Intron SNP G G C rs111820297 unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-A 3105 hgsc.bcm.edu 37 6 29913294 29913294 + 3'UTR SNP G G C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 broad.mit.edu 37 6 31323507 31323507 + Intron SNP G A A rs41554617 bycluster TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-B 3106 broad.mit.edu 37 6 31324372 31324373 + Intron DEL GA - - rs71955092 unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-B 3106 broad.mit.edu;hgsc.bcm.edu 37 6 31323941 31323941 + Intron SNP T T A rs45482298 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31323128 31323128 + Silent SNP A A G rs41551014 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31323143 31323143 + Silent SNP T T C rs41546016 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31323202 31323202 + Missense_Mutation SNP T T C rs41545916 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31323215 31323215 + Silent SNP T T C rs41541216 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31323254 31323254 + Silent SNP G G C rs61759952 bycluster TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-B 3106 hgsc.bcm.edu 37 6 31323296 31323296 + Silent SNP A A G rs142145421 bycluster;byfrequency;by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-B 3106 hgsc.bcm.edu 37 6 31324051 31324051 + Missense_Mutation SNP C C A rs41551018 bycluster;byfrequency;by1000genomes TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31324536 31324536 + Missense_Mutation SNP T T A rs147726893 by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-B 3106 hgsc.bcm.edu 37 6 31324542 31324542 + Missense_Mutation SNP T T C rs151341188 unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-B 3106 hgsc.bcm.edu 37 6 31324604 31324604 + Frame_Shift_Del DEL T T - rs9266179 bycluster TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-C 3107 broad.mit.edu 37 6 31237140 31237140 + Silent SNP A T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-C 3107 broad.mit.edu 37 6 31239271 31239275 + Intron DEL ATCCA - - rs112779158 unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 ATCCA ATCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-C 3107 hgsc.bcm.edu 37 6 31237258 31237258 + Intron SNP G G C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-C 3107 hgsc.bcm.edu 37 6 31237786 31237786 + Silent SNP A A T rs41556617 bycluster TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-C 3107 hgsc.bcm.edu 37 6 31237802 31237802 + Missense_Mutation SNP A A G rs17413387 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-C 3107 hgsc.bcm.edu 37 6 31237817 31237817 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-C 3107 hgsc.bcm.edu 37 6 31238126 31238126 + Silent SNP G G A rs79295030 unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-C 3107 hgsc.bcm.edu 37 6 31238179 31238179 + Silent SNP C C T rs41562012 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DOA 3111 broad.mit.edu 37 6 32974563 32974563 + 3'UTR SNP C A A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DPA1 3113 broad.mit.edu 37 6 33036318 33036318 + Intron SNP T C C rs79015944 bycluster TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DPA1 3113 broad.mit.edu;hgsc.bcm.edu 37 6 33036365 33036365 + Intron SNP T T C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DPA1 3113 broad.mit.edu;hgsc.bcm.edu 37 6 33036464 33036464 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DPB1 3115 broad.mit.edu 37 6 33096471 33096471 + Intron SNP G T T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DPB1 3115 hgsc.bcm.edu 37 6 33054014 33054014 + Frame_Shift_Del DEL A A - rs142167543 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DPB1 3115 hgsc.bcm.edu 37 6 33054014 33054014 + Frame_Shift_Del DEL A A - rs142167543 bycluster;by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DQA1 3117 broad.mit.edu 37 6 32610142 32610152 + Intron DEL TTCTGTCTCTC - - novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 TTCTGTCTCTC TTCTGTCTCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DQA1 3117 hgsc.bcm.edu 37 6 32605234 32605234 + 5'UTR SNP G G A rs76209369 unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQA1 3117 hgsc.bcm.edu 37 6 32610574 32610574 + Intron SNP C C T rs9272798 bycluster;by1000genomes TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DQB1 3119 hgsc.bcm.edu 37 6 32627967 32627967 + 3'UTR SNP A A G rs9273466 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32627976 32627976 + 3'UTR SNP G G A rs1063345 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32627976 32627976 + 3'UTR SNP G G A rs1063345 bycluster;byfrequency;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32627991 32627991 + 3'UTR SNP C C T rs78557713 bycluster TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32628022 32628022 + Silent SNP A A G rs1140347 bycluster;byfrequency;by1000genomes TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32628030 32628030 + Splice_Region SNP G G A rs9273471 bycluster;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32629146 32629146 + Silent SNP G G A rs112517017 bycluster;byfrequency TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32629146 32629146 + Silent SNP G G A rs112517017 bycluster;byfrequency TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32629891 32629891 + Missense_Mutation SNP C C T rs74888860 bycluster;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32629891 32629891 + Missense_Mutation SNP C C T rs74888860 bycluster;by1000genomes TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32632777 32632777 + Silent SNP C C T rs79502177 unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32634306 32634306 + Missense_Mutation SNP A A T rs1049060 bycluster;byfrequency TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32634331 32634331 + Silent SNP G G A rs1049058 bycluster;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32634331 32634331 + Silent SNP G G A rs1049058 bycluster;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu 37 6 32634350 32634350 + Missense_Mutation SNP T T C rs76331164 unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DQB1 3119 hgsc.bcm.edu;ucsc.edu 37 6 32629137 32629137 + Silent SNP T T G rs1140343 bycluster;byfrequency;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DQB2 3120 broad.mit.edu 37 6 32725567 32725567 + Intron SNP C T T rs77504727 bycluster TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DQB2 3120 broad.mit.edu 37 6 32726774 32726774 + Missense_Mutation SNP C T T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DRA 3122 broad.mit.edu;hgsc.bcm.edu 37 6 32410977 32410978 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB1 3123 broad.mit.edu;ucsc.edu 37 6 32547997 32547997 + Intron SNP T G G rs41287241 bycluster;byfrequency TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DRB1 3123 hgsc.bcm.edu 37 6 32546846 32546846 + 3'UTR SNP C C T rs74196494 unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32546855 32546855 + 3'UTR SNP G G T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32546913 32546913 + Intron SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32546914 32546914 + Intron SNP C C T rs181125806 by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32548086 32548086 + Intron SNP T T G rs9269747 bycluster TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB1 3123 hgsc.bcm.edu 37 6 32549345 32549346 + Frame_Shift_Ins INS - - CA rs35837054 bycluster TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552016 32552016 + Silent SNP C C A rs17880973 bycluster;byfrequency;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552039 32552039 + Missense_Mutation SNP C C T rs150747106 by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552048 32552048 + Missense_Mutation SNP C C T rs56158521 byfrequency;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552079 32552079 + Silent SNP G G A rs17884729 unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552080 32552080 + Missense_Mutation SNP T T C rs3175105 byfrequency TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552081 32552081 + Missense_Mutation SNP A A G rs113465897 bycluster TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552087 32552087 + Missense_Mutation SNP C C A rs17878947 bycluster;alternate_allele TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552087 32552087 + Missense_Mutation SNP C C A rs17878947 bycluster;alternate_allele TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552091 32552091 + Missense_Mutation SNP G G C rs17884840 bycluster;byfrequency TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552091 32552091 + Missense_Mutation SNP G G C rs17884840 bycluster;byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552096 32552096 + Missense_Mutation SNP G G A rs188617679 by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552100 32552100 + Silent SNP C C T rs191828595 by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552117 32552117 + Missense_Mutation SNP A A G rs114435757 byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB1 3123 hgsc.bcm.edu 37 6 32557544 32557544 + 5'UTR SNP G G T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB1 3123 hgsc.bcm.edu;ucsc.edu 37 6 32551957 32551957 + Missense_Mutation SNP G G C rs9269942 bycluster TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB5 3127 broad.mit.edu 37 6 32520509 32520510 + Intron DEL CA - - rs71838950 bycluster;by1000genomes TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DRB5 3127 broad.mit.edu 37 6 32522507 32522526 + Intron DEL CACTTGGCAGGTGTAAACCT - - rs139996300 bycluster;by1000genomes TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 CACTTGGCAGGTGTAAACCT CACTTGGCAGGTGTAAACCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-DRB5 3127 hgsc.bcm.edu 37 6 32485487 32485487 + 3'UTR SNP G G T rs113453723 unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32485527 32485527 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32485539 32485539 + Splice_Region SNP G G C rs112839628 by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32485541 32485541 + Intron SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32485790 32485790 + Intron SNP A A G rs113487704 bycluster;byfrequency;by1000genomes TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32485815 32485815 + Intron SNP G G A rs112716963 bycluster;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489792 32489792 + Missense_Mutation SNP G G T rs41562816 bycluster;byfrequency TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489794 32489794 + Silent SNP G G A rs1059350 byfrequency;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489822 32489822 + Missense_Mutation SNP C C T rs115417906 bycluster;byfrequency;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489825 32489825 + Missense_Mutation SNP T T A rs148834340 bycluster;byfrequency;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489835 32489835 + Missense_Mutation SNP C C G rs118111025 bycluster;byfrequency;by1000genomes TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489839 32489839 + Silent SNP G G A rs151326153 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32497901 32497901 + Splice_Site SNP C C T rs79192142 unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32497905 32497905 + Nonsense_Mutation SNP G G A rs79754118 bycluster TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-DRB5 3127 hgsc.bcm.edu 37 6 32497905 32497905 + Nonsense_Mutation SNP G G A rs79754118 bycluster TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLA-E 3133 broad.mit.edu 37 6 30459116 30459116 + Silent SNP T A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-E 3133 broad.mit.edu;hgsc.bcm.edu 37 6 30457316 30457316 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-E 3133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30457321 30457321 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-F 3134 broad.mit.edu;hgsc.bcm.edu 37 6 29691207 29691207 + 5'UTR SNP A A G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-F 3134 broad.mit.edu;hgsc.bcm.edu 37 6 29694668 29694668 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLA-G 3135 broad.mit.edu 37 6 29798581 29798582 + 3'UTR INS - ATTTGTTCATGCCT ATTTGTTCATGCCT rs1704 bycluster;byfrequency TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-G 3135 broad.mit.edu 37 6 29896268 29896268 + Intron SNP T C C rs2517759 bycluster TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-G 3135 broad.mit.edu 37 6 29896275 29896275 + Intron SNP G A A rs2517758 bycluster;by2hit2allele;byhapmap TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-H 3136 broad.mit.edu 37 6 29856941 29856941 + 3'UTR DEL A - - rs147655138 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-H 3136 broad.mit.edu 37 6 29856941 29856941 + 3'UTR DEL A - - rs147655138 unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-H 3136 broad.mit.edu 37 6 29856961 29856961 + 3'UTR SNP G A A rs113178503 unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-H 3136 broad.mit.edu 37 6 29856977 29856977 + 3'UTR SNP T G G rs116665472 byfrequency TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-H 3136 broad.mit.edu 37 6 29856977 29856977 + 3'UTR SNP T G G rs116665472 byfrequency TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-J 3137 broad.mit.edu 37 6 29976859 29976859 + Missense_Mutation SNP T A A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLA-L 3139 broad.mit.edu 37 6 30234086 30234086 + 3'UTR DEL G - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLF 3131 broad.mit.edu 37 17 53345085 53345085 + Intron SNP T C C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HLF 3131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53345220 53345220 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLF 3131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53398085 53398085 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HLTF 6596 hgsc.bcm.edu 37 3 148766680 148766680 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLTF 6596 hgsc.bcm.edu;ucsc.edu 37 3 148789184 148789184 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HLX 3142 hgsc.bcm.edu;ucsc.edu 37 1 221055659 221055659 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMBOX1 79618 broad.mit.edu 37 8 28908874 28908875 + 3'UTR INS - AACC AACC rs3830316 bycluster;by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMBOX1 79618 broad.mit.edu 37 8 28908874 28908875 + 3'UTR INS - AACC AACC rs3830316 bycluster;by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMBOX1 79618 broad.mit.edu 37 8 28908874 28908875 + 3'UTR INS - AACC AACC rs3830316 bycluster;by1000genomes TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMBOX1 79618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28906483 28906483 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMBOX1 79618 hgsc.bcm.edu;ucsc.edu 37 8 28827803 28827803 + Silent SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMBS 3145 broad.mit.edu 37 11 118964143 118964143 + 3'UTR DEL G - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMBS 3145 broad.mit.edu;hgsc.bcm.edu 37 11 118963098 118963098 + Intron SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMBS 3145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118962906 118962906 + Intron SNP T T C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMBS 3145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118963206 118963206 + Silent SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu 37 1 186017962 186017962 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185984500 185984500 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185985179 185985179 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186056587 186056587 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186064396 186064396 + Nonsense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186099138 186099138 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186113746 186113746 + Missense_Mutation SNP G G T rs149329415 unknown;alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186136027 186136027 + Missense_Mutation SNP G G A rs150494959 byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186147782 186147782 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186151399 186151399 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186158774 186158774 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 broad.mit.edu;ucsc.edu 37 1 185953431 185953431 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx HMCN1 83872 hgsc.bcm.edu 37 1 185704113 185704113 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMCN1 83872 hgsc.bcm.edu;ucsc.edu 37 1 185939611 185939611 + Frame_Shift_Del DEL C C - novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C C - C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 hgsc.bcm.edu;ucsc.edu 37 1 186023105 186023105 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T T - T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMCN1 83872 hgsc.bcm.edu;ucsc.edu 37 1 186114885 186114885 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq HMG20A 10363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77763256 77763256 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMG20A 10363 hgsc.bcm.edu 37 15 77756618 77756618 + Silent SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMG20A 10363 hgsc.bcm.edu;ucsc.edu 37 15 77771582 77771582 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMGA2 8091 broad.mit.edu 37 12 66308767 66308767 + Intron SNP A G G rs148485269 by1000genomes TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGB1 3146 broad.mit.edu 37 13 31035234 31035234 + 3'UTR SNP C G G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGB1 3146 broad.mit.edu 37 13 31035409 31035409 + 3'UTR SNP A G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGB2 3148 broad.mit.edu 37 4 174253044 174253044 + 3'UTR SNP C T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGB2 3148 broad.mit.edu;hgsc.bcm.edu 37 4 174253220 174253220 + 3'UTR SNP A A T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGB3 3149 broad.mit.edu 37 X 150156447 150156447 + 3'UTR SNP C G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGB3L1 0 broad.mit.edu 37 20 33421797 33421797 + RNA DEL T - - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGCLL1 54511 hgsc.bcm.edu;ucsc.edu 37 6 55406919 55406919 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMGCS1 3157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43295906 43295906 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGCS2 3158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120307117 120307117 + Silent SNP C C A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGCS2 3158 broad.mit.edu;ucsc.edu 37 1 120307055 120307055 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGN2 3151 broad.mit.edu 37 1 26801118 26801118 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGN2 3151 broad.mit.edu 37 1 26801736 26801736 + 3'UTR SNP A T T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGN2 3151 hgsc.bcm.edu;ucsc.edu 37 1 26799998 26799998 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGN3 9324 broad.mit.edu 37 6 79911484 79911484 + Intron SNP G T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGN3 9324 broad.mit.edu 37 6 79911705 79911705 + Intron DEL A - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGN3 9324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 79944257 79944257 + Intron SNP A A C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGN3 9324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 79944289 79944289 + 5'UTR SNP C C A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGN5 79366 broad.mit.edu 37 X 80377126 80377145 + 5'UTR DEL AAATGAGTTTTCAATGAACT - - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 AAATGAGTTTTCAATGAACT AAATGAGTTTTCAATGAACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMGXB3 22993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149403938 149403938 + Silent SNP T T C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGXB3 22993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149431465 149431465 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGXB4 10042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 35659854 35659854 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMGXB4 10042 hgsc.bcm.edu 37 22 35661544 35661544 + Frame_Shift_Del DEL A A - novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMHA1 23526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1073241 1073241 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMHA1 23526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1074198 1074198 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMHA1 23526 broad.mit.edu;ucsc.edu 37 19 1074667 1074667 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMHA1 23526 hgsc.bcm.edu 37 19 1067422 1067422 + Silent SNP A A G rs76139012 bycluster;byfrequency;by1000genomes TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMMR 3161 hgsc.bcm.edu 37 5 162894775 162894775 + Intron SNP A A C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMMR 3161 hgsc.bcm.edu 37 5 162917425 162917426 + Frame_Shift_Ins INS - - A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMOX1 3162 broad.mit.edu 37 22 35785885 35785885 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HMOX1 3162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 35783139 35783139 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMOX2 3163 hgsc.bcm.edu;ucsc.edu 37 16 4558089 4558089 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMP19 51617 hgsc.bcm.edu;ucsc.edu 37 5 173534370 173534370 + Silent SNP C C T rs11557147 unknown;alternate_allele TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMSD 284293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61627535 61627535 + Silent SNP C C T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HMX1 3166 broad.mit.edu 37 4 8868823 8868823 + 3'UTR DEL A - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HN1 51155 broad.mit.edu 37 17 73132071 73132071 + 3'UTR SNP G A A rs76538354 unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HN1L 90861 broad.mit.edu 37 16 1749049 1749049 + 3'UTR SNP G T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HN1L 90861 broad.mit.edu 37 16 1749176 1749176 + 3'UTR DEL T - - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HN1L 90861 broad.mit.edu;hgsc.bcm.edu 37 16 1748907 1748907 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HN1L 90861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1735538 1735538 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HN1L 90861 hgsc.bcm.edu;ucsc.edu 37 16 1747810 1747810 + Intron SNP C C A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNF1B 6928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36091725 36091725 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNF1B 6928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36091725 36091725 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNF1B 6928 hgsc.bcm.edu 37 17 36104840 36104840 + Silent SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNF4G 3174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 76456146 76456146 + Silent SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNF4G 3174 hgsc.bcm.edu 37 8 76468287 76468287 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRNPA0 10949 hgsc.bcm.edu 37 5 137088945 137088946 + In_Frame_Ins INS - - GCT novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPA1 3178 broad.mit.edu 37 12 54675316 54675316 + Intron SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPA1 3178 broad.mit.edu 37 12 54675316 54675316 + Intron SNP A C C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPA1P10 664709 broad.mit.edu;hgsc.bcm.edu 37 12 54678158 54678158 + RNA SNP A A T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPA2B1 3181 hgsc.bcm.edu 37 7 26235512 26235512 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPA3 220988 broad.mit.edu;hgsc.bcm.edu 37 2 178084035 178084035 + 3'UTR SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPA3P1 10151 broad.mit.edu 37 10 44285141 44285141 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPA3P1 10151 broad.mit.edu 37 10 44285777 44285777 + Missense_Mutation SNP T C C rs3750724 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPC 3183 broad.mit.edu;hgsc.bcm.edu 37 14 21699200 21699200 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPCL1 343069 broad.mit.edu;hgsc.bcm.edu 37 1 12907356 12907356 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPCL1 343069 hgsc.bcm.edu 37 1 12907781 12907781 + Missense_Mutation SNP T T C rs28441396 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPD 3184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83280713 83280713 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPH1 3187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179047903 179047903 + Silent SNP C C T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPH1 3187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179050064 179050064 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPH1 3187 hgsc.bcm.edu;ucsc.edu 37 5 179043167 179043167 + Silent SNP G G A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPH2 3188 broad.mit.edu 37 X 100668362 100668362 + 3'UTR SNP A C C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPH2 3188 broad.mit.edu 37 X 100668409 100668409 + 3'UTR SNP G A A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPH3 3189 broad.mit.edu 37 10 70097830 70097831 + Intron INS - T T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPK 3190 broad.mit.edu 37 9 86584095 86584095 + 3'UTR SNP T C C novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPK 3190 broad.mit.edu 37 9 86584095 86584096 + 3'UTR INS - C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPK 3190 broad.mit.edu;hgsc.bcm.edu 37 9 86586212 86586212 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPK 3190 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86592692 86592692 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPK 3190 hgsc.bcm.edu 37 9 86585175 86585175 + Silent SNP G G T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRNPL 3191 broad.mit.edu 37 19 39327271 39327271 + 3'UTR SNP C A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPM 4670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8528506 8528506 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRNPR 10236 hgsc.bcm.edu;ucsc.edu 37 1 23640079 23640079 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRNPU 3192 hgsc.bcm.edu;ucsc.edu 37 1 245022575 245022575 + Splice_Site SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRNPUL1 11100 broad.mit.edu 37 19 41808474 41808474 + Intron SNP C A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPUL1 11100 broad.mit.edu;ucsc.edu 37 19 41811645 41811645 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRNPUL1 11100 hgsc.bcm.edu;ucsc.edu 37 19 41808629 41808629 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRNPUL2 221092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62489317 62489317 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRPDL 9987 broad.mit.edu 37 4 83350567 83350567 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HNRPDL 9987 hgsc.bcm.edu;ucsc.edu 37 4 83347663 83347663 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRPLL 92906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 38797055 38797055 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HNRPLL 92906 hgsc.bcm.edu 37 2 38800465 38800465 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HNRPLL 92906 hgsc.bcm.edu;ucsc.edu 37 2 38800465 38800465 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HOGA1 112817 broad.mit.edu;hgsc.bcm.edu 37 10 99344532 99344532 + Silent SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOGA1 112817 broad.mit.edu;hgsc.bcm.edu 37 10 99359589 99359589 + Intron SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOMEZ 57594 hgsc.bcm.edu 37 14 23744912 23744912 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HOMEZ 57594 hgsc.bcm.edu 37 14 23745517 23745518 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOOK1 51361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 60325915 60325915 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOOK2 29911 broad.mit.edu 37 19 12883813 12883813 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOOK3 84376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 42821725 42821725 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOOK3 84376 broad.mit.edu;ucsc.edu 37 8 42828459 42828459 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOOK3 84376 hgsc.bcm.edu;ucsc.edu 37 8 42841800 42841800 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXA10 3206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 27211532 27211533 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXA11AS 0 broad.mit.edu 37 7 27228484 27228484 + RNA DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXA1 3198 hgsc.bcm.edu 37 7 27135314 27135316 + In_Frame_Del DEL CGA CGA - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXA1 3198 hgsc.bcm.edu 37 7 27135314 27135316 + In_Frame_Del DEL CGA CGA - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXA2 3199 broad.mit.edu 37 7 27142221 27142221 + 5'UTR SNP C T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXA2 3199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 27140542 27140542 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXA9 3205 broad.mit.edu 37 7 27203168 27203168 + 3'UTR SNP G C C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB13 10481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46805408 46805408 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB13 10481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46805884 46805884 + Silent SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB1 3211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46607033 46607033 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB1 3211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46608210 46608210 + Silent SNP G G T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB1 3211 hgsc.bcm.edu 37 17 46608181 46608181 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HOXB1 3211 hgsc.bcm.edu 37 17 46608184 46608185 + In_Frame_Ins INS - - GGGCGCTGT novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB2 3212 broad.mit.edu 37 17 46620386 46620386 + 3'UTR SNP G T T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB2 3212 broad.mit.edu 37 17 46622334 46622335 + 5'UTR INS - C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB3 3213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46628008 46628008 + Silent SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB4 3214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46654154 46654154 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXB4 3214 broad.mit.edu;ucsc.edu 37 17 46654168 46654168 + Silent SNP G C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB6 3216 broad.mit.edu;ucsc.edu 37 17 46673821 46673821 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB7 3217 broad.mit.edu 37 17 46685066 46685066 + 3'UTR DEL T - - novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB7 3217 broad.mit.edu 37 17 46685066 46685066 + 3'UTR DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXB7 3217 broad.mit.edu 37 17 46685076 46685077 + 3'UTR INS - T T rs71366899 bycluster;by1000genomes TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXC10 3226 hgsc.bcm.edu;ucsc.edu 37 12 54383107 54383107 + Silent SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HOXC13 3229 broad.mit.edu;hgsc.bcm.edu 37 12 54332658 54332658 + 5'UTR SNP T T G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXC4 3221 hgsc.bcm.edu 37 12 54448106 54448106 + Missense_Mutation SNP A A G rs75256744 bycluster;byfrequency;by1000genomes TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HOXC6 3223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54422514 54422514 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXC6 3223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54422672 54422672 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXC8 3224 broad.mit.edu;ucsc.edu 37 12 54403161 54403161 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXC8 3224 hgsc.bcm.edu;ucsc.edu 37 12 54403321 54403328 + Frame_Shift_Del DEL GCCTCCAA GCCTCCAA - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 GCCTCCAA GCCTCCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXC8 3224 hgsc.bcm.edu;ucsc.edu 37 12 54403350 54403350 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXD11 3237 broad.mit.edu 37 2 176972132 176972132 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXD11 3237 hgsc.bcm.edu;ucsc.edu 37 2 176973807 176973807 + Silent SNP G G A rs138394594 bycluster;byfrequency;by1000genomes TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HOXD3 3232 broad.mit.edu 37 2 177033982 177033982 + Missense_Mutation SNP A C C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXD3 3232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 177033941 177033941 + Silent SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXD3 3232 broad.mit.edu;ucsc.edu 37 2 177033940 177033940 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HOXD4 3233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 177016412 177016412 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HOXD9 3235 hgsc.bcm.edu 37 2 176988290 176988291 + In_Frame_Ins INS - - GCA novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HP1BP3 50809 broad.mit.edu 37 1 21070972 21070972 + 3'UTR DEL A - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HP1BP3 50809 hgsc.bcm.edu 37 1 21100040 21100040 + Silent SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HPCAL1 3241 broad.mit.edu 37 2 10560058 10560058 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPD 3242 broad.mit.edu 37 12 122277538 122277538 + 3'UTR SNP C T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPDL 84842 broad.mit.edu 37 1 45794010 45794010 + 3'UTR SNP C A A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPGD 3248 broad.mit.edu 37 4 175412964 175412964 + 3'UTR SNP A T T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPGD 3248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175443219 175443219 + Splice_Site SNP C C A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPGDS 27306 hgsc.bcm.edu;ucsc.edu 37 4 95229888 95229888 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HPN 3249 broad.mit.edu 37 19 35551239 35551239 + Intron SNP C T T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPN 3249 broad.mit.edu 37 19 35557111 35557111 + Intron SNP A G G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPN 3249 broad.mit.edu;ucsc.edu 37 19 35540222 35540222 + Silent SNP A G G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPRT1 3251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133609298 133609298 + Missense_Mutation SNP C C A rs137852481 unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS1 3257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100177390 100177390 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS3 84343 broad.mit.edu 37 3 148890105 148890106 + 3'UTR INS - CA CA rs111633351 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPS3 84343 hgsc.bcm.edu;ucsc.edu 37 3 148858222 148858222 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HPS4 89781 broad.mit.edu 37 22 26853885 26853885 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPS4 89781 broad.mit.edu 37 22 26861726 26861727 + Intron DEL CC - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPS4 89781 broad.mit.edu 37 22 26863466 26863466 + Intron DEL T - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPS4 89781 broad.mit.edu;hgsc.bcm.edu 37 22 26859937 26859937 + Silent SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS4 89781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26860453 26860453 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS4 89781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26864514 26864514 + Intron SNP T T C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS5 11234 broad.mit.edu 37 11 18301346 18301346 + 3'UTR SNP C A A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPS5 11234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18303659 18303659 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS5 11234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18314494 18314494 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPS5 11234 broad.mit.edu;ucsc.edu 37 11 18327003 18327003 + Nonsense_Mutation SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPS6 79803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103827518 103827518 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPSE 10855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 84231973 84231973 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPSE 10855 hgsc.bcm.edu 37 4 84240608 84240608 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HPSE2 60495 broad.mit.edu 37 10 100221509 100221509 + Intron SNP T G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HPSE2 60495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100481428 100481428 + Silent SNP G G A rs142810016 unknown;alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPSE2 60495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100904018 100904018 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HPSE2 60495 hgsc.bcm.edu 37 10 100992144 100992144 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HPSE2 60495 hgsc.bcm.edu;ucsc.edu 37 10 100503663 100503663 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HR 55806 broad.mit.edu;hgsc.bcm.edu 37 8 21986313 21986313 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HR 55806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 21985225 21985225 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRAS 3265 hgsc.bcm.edu;ucsc.edu 37 11 533545 533545 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID HRC 3270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49657389 49657389 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRC 3270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49658118 49658118 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRC 3270 hgsc.bcm.edu 37 19 49657177 49657178 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRC 3270 hgsc.bcm.edu 37 19 49657177 49657178 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRC 3270 hgsc.bcm.edu 37 19 49657754 49657754 + Silent SNP G G A rs145933641 byfrequency TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRC 3270 hgsc.bcm.edu 37 19 49657754 49657754 + Silent SNP G G A rs145933641 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRCT1 646962 hgsc.bcm.edu 37 9 35906601 35906601 + Missense_Mutation SNP C C A rs112212538 bycluster;byfrequency;by1000genomes TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRH2 3274 hgsc.bcm.edu;ucsc.edu 37 5 175111276 175111276 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HRH4 59340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 22056745 22056745 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRNR 388697 broad.mit.edu 37 1 152188024 152188024 + Silent SNP C G G rs142170860 unknown;alternate_allele TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HRNR 388697 broad.mit.edu 37 1 152192654 152192654 + Missense_Mutation SNP C A A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HRNR 388697 broad.mit.edu;hgsc.bcm.edu 37 1 152185823 152185823 + Missense_Mutation SNP C C A rs41266120 byfrequency;by1000genomes;alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRNR 388697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152191542 152191542 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HRSP12 10247 broad.mit.edu 37 8 99114990 99114990 + 3'UTR SNP T A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HS1BP3 64342 broad.mit.edu;ucsc.edu 37 2 20823713 20823713 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HS1BP3 64342 hgsc.bcm.edu 37 2 20838372 20838372 + Silent SNP A A G rs113332675 unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HS1BP3 64342 hgsc.bcm.edu;ucsc.edu 37 2 20824634 20824634 + Silent SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HS2ST1 9653 hgsc.bcm.edu 37 1 87380814 87380814 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HS3ST3B1(dist=424027) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 14673519 14673519 + IGR SNP C C G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HS3ST5 222537 broad.mit.edu 37 6 114378234 114378234 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HS3ST5 222537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 114383925 114383925 + Missense_Mutation SNP C C T rs144143119 byfrequency TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HS6ST1 9394 broad.mit.edu 37 2 129023184 129023185 + 3'UTR INS - T T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HS6ST3 266722 broad.mit.edu;hgsc.bcm.edu 37 13 96743104 96743104 + 5'UTR SNP T T A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSD17B11 51170 broad.mit.edu 37 4 88312253 88312253 + 5'UTR SNP T G G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B11 51170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88293948 88293948 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSD17B11 51170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88303419 88303419 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSD17B12 51144 broad.mit.edu 37 11 43852234 43852234 + Intron DEL A - - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B12 51144 broad.mit.edu 37 11 43852717 43852717 + Intron SNP T C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B12 51144 broad.mit.edu 37 11 43852783 43852783 + Intron SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B12 51144 broad.mit.edu 37 11 43877353 43877353 + 3'UTR DEL A - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B1 3292 broad.mit.edu 37 17 40705762 40705762 + Intron SNP G T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B1 3292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40706578 40706578 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSD17B4 3295 hgsc.bcm.edu;ucsc.edu 37 5 118809663 118809663 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSD17B7P2 158160 broad.mit.edu 37 10 38645343 38645343 + 5'UTR SNP C T T rs75687299 bycluster;byfrequency TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B7P2 158160 broad.mit.edu 37 10 38645357 38645357 + 5'UTR SNP C T T rs142891358 by1000genomes TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B7P2 158160 broad.mit.edu 37 10 38645403 38645403 + Silent SNP T C C rs72639552 bycluster;by1000genomes TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B7P2 158160 broad.mit.edu 37 10 38654432 38654432 + Missense_Mutation SNP A G G rs2257765 bysubmitter TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSD17B8 7923 broad.mit.edu;hgsc.bcm.edu 37 6 33173664 33173664 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSD3B1 3283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120050234 120050234 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSDL2 84263 broad.mit.edu 37 9 115179063 115179063 + Intron SNP A C C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSF2BP 11077 broad.mit.edu 37 21 44985172 44985172 + Intron SNP C G G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSF2BP 11077 hgsc.bcm.edu;ucsc.edu 37 21 45053272 45053272 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSF4 3299 broad.mit.edu 37 16 67199696 67199696 + Missense_Mutation SNP C A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSF4 3299 broad.mit.edu 37 16 67200251 67200251 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSF5 124535 broad.mit.edu 37 17 56499634 56499634 + 3'UTR SNP T C C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSF5 124535 broad.mit.edu 37 17 56565201 56565201 + Silent SNP G T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSFX1 100506164 hgsc.bcm.edu 37 X 148856615 148856615 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSFX1 100506164 hgsc.bcm.edu 37 X 148856615 148856615 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSH2D 84941 broad.mit.edu 37 19 16263872 16263872 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSH2D 84941 hgsc.bcm.edu 37 19 16259645 16259645 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSP90AA1 3320 broad.mit.edu;hgsc.bcm.edu 37 14 102548486 102548486 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AA1 3320 broad.mit.edu;hgsc.bcm.edu 37 14 102552583 102552583 + Missense_Mutation SNP G G C rs11547522 unknown;alternate_allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AA1 3320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102551690 102551690 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AA1 3320 hgsc.bcm.edu;ucsc.edu 37 14 102550300 102550300 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSP90AB1 3326 broad.mit.edu;hgsc.bcm.edu 37 6 44218220 44218220 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AB1 3326 hgsc.bcm.edu 37 6 44221384 44221384 + 3'UTR SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AB1 3326 hgsc.bcm.edu;ucsc.edu 37 6 44219502 44219503 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AB1 3326 hgsc.bcm.edu;ucsc.edu 37 6 44219603 44219604 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90AB2P 391634 broad.mit.edu 37 4 13338959 13338959 + RNA SNP G A A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSP90AB2P 391634 broad.mit.edu 37 4 13338960 13338960 + RNA SNP C T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSP90B1 7184 broad.mit.edu 37 12 104332226 104332226 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSP90B1 7184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104341195 104341195 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90B1 7184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104341410 104341410 + Splice_Site SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSP90B1 7184 hgsc.bcm.edu 37 12 104328066 104328066 + Splice_Site SNP G G A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSP90B1 7184 hgsc.bcm.edu 37 12 104335185 104335185 + Splice_Region SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSP90B3P 343477 broad.mit.edu 37 1 92108377 92108377 + Missense_Mutation SNP A C C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA12A 259217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118434631 118434631 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA12A 259217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118464696 118464696 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA12A 259217 hgsc.bcm.edu;ucsc.edu 37 10 118435938 118435938 + Silent SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA13 6782 broad.mit.edu 37 21 15755498 15755498 + 5'UTR SNP C A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA13 6782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15755454 15755454 + 5'UTR SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA14 51182 broad.mit.edu;hgsc.bcm.edu 37 10 14880465 14880465 + Intron SNP G G A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA14 51182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14890648 14890648 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA14 51182 hgsc.bcm.edu;ucsc.edu 37 10 14893312 14893312 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA1L 3305 broad.mit.edu;hgsc.bcm.edu 37 6 31779631 31779631 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA1L 3305 hgsc.bcm.edu 37 6 31778695 31778695 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA1L 3305 hgsc.bcm.edu 37 6 31778972 31778989 + In_Frame_Del DEL GCTTGTTCTGGCTGATGT GCTTGTTCTGGCTGATGT - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 GCTTGTTCTGGCTGATGT GCTTGTTCTGGCTGATGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA2 3306 broad.mit.edu 37 14 65009534 65009535 + 3'UTR INS - T T rs35270454 bycluster;byfrequency;by1000genomes TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA2 3306 broad.mit.edu 37 14 65009534 65009535 + 3'UTR INS - T T rs35270454 bycluster;byfrequency;by1000genomes TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA2 3306 broad.mit.edu 37 14 65009534 65009535 + 3'UTR INS - T T rs35270454 bycluster;byfrequency;by1000genomes TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA2 3306 broad.mit.edu 37 14 65009534 65009535 + 3'UTR INS - T T rs35270454 bycluster;byfrequency;by1000genomes TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA2 3306 hgsc.bcm.edu 37 14 65008972 65008972 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA4 3308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132424155 132424155 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA4 3308 hgsc.bcm.edu 37 5 132424179 132424179 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA4L 22824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 128725181 128725181 + Silent SNP A A G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA4L 22824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 128729255 128729255 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA4L 22824 broad.mit.edu;ucsc.edu 37 4 128732596 128732596 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA5 3309 broad.mit.edu;hgsc.bcm.edu 37 9 127998975 127998975 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA5 3309 broad.mit.edu;hgsc.bcm.edu 37 9 128001354 128001354 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA6 3310 hgsc.bcm.edu 37 1 161495527 161495527 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA7 3311 broad.mit.edu 37 1 161576641 161576641 + Silent SNP G T T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA7 3311 broad.mit.edu 37 1 161577393 161577393 + 3'UTR SNP C T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA8 3312 broad.mit.edu 37 11 122930276 122930276 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122930262 122930262 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122930264 122930264 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122930668 122930668 + Silent SNP A A G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122930929 122930929 + Silent SNP A A G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122931975 122931975 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 122929405 122929405 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 122931841 122931841 + Silent SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA8 3312 hgsc.bcm.edu 37 11 122928453 122928453 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA9 3313 broad.mit.edu 37 5 137911069 137911070 + 5'UTR INS - T T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPA9 3313 broad.mit.edu;hgsc.bcm.edu 37 5 137910976 137910976 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA9 3313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137895767 137895767 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA9 3313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137902359 137902359 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA9 3313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137903401 137903401 + Silent SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPA9 3313 hgsc.bcm.edu;ucsc.edu 37 5 137902712 137902712 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPA9 3313 hgsc.bcm.edu;ucsc.edu 37 5 137909545 137909545 + Intron SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPB11 51668 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54405733 54405733 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPB2 3316 hgsc.bcm.edu 37 11 111784450 111784450 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPB3 8988 hgsc.bcm.edu;ucsc.edu 37 5 53751717 53751717 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPBAP1 79663 hgsc.bcm.edu;ucsc.edu 37 3 122459679 122459679 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPBP1 23640 broad.mit.edu 37 19 55790886 55790887 + In_Frame_Ins INS - GCCGCCGCC GCCGCCGCC rs3040014 bycluster;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPC159 0 broad.mit.edu 37 2 64686008 64686008 + 3'UTR DEL T - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPC159 0 hgsc.bcm.edu;ucsc.edu 37 2 64682738 64682738 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPD1 3329 broad.mit.edu 37 2 198351641 198351641 + 3'UTR DEL T - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPD1 3329 broad.mit.edu;hgsc.bcm.edu 37 2 198362076 198362076 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HSPD1 3329 hgsc.bcm.edu 37 2 198363397 198363397 + Splice_Site SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPE1 3336 broad.mit.edu 37 2 198368085 198368085 + 3'UTR SNP T C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPG2 3339 broad.mit.edu 37 1 22166039 22166039 + Missense_Mutation SNP G C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPG2 3339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22168731 22168731 + Splice_Site SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPG2 3339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22178652 22178652 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPG2 3339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22222714 22222714 + Silent SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPG2 3339 hgsc.bcm.edu 37 1 22191827 22191827 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPG2 3339 hgsc.bcm.edu 37 1 22199879 22199880 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPG2 3339 hgsc.bcm.edu 37 1 22213976 22213976 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPG2 3339 hgsc.bcm.edu 37 1 22216602 22216602 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPG2 3339 hgsc.bcm.edu;ucsc.edu 37 1 22216599 22216600 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPH1 10808 broad.mit.edu 37 13 31712675 31712675 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HSPH1 10808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 31729705 31729705 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HSPH1 10808 hgsc.bcm.edu 37 13 31711636 31711636 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HSPH1 10808 hgsc.bcm.edu;ucsc.edu 37 13 31725283 31725283 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HTA 283902 broad.mit.edu 37 16 73127625 73127625 + RNA SNP A T T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTATSF1 27336 hgsc.bcm.edu;ucsc.edu 37 X 135581831 135581831 + Silent SNP A A C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HTR1A 3350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 63256620 63256620 + Missense_Mutation SNP G G T rs140681943 unknown;alternate_allele TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR1A 3350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 63257288 63257288 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR1E 3354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87725418 87725418 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR1E 3354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87725912 87725912 + Missense_Mutation SNP G G A rs61735411 unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR1E 3354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87725923 87725923 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR1F 3355 hgsc.bcm.edu;ucsc.edu 37 3 88040822 88040823 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR2A 3356 broad.mit.edu 37 13 47408865 47408865 + 3'UTR SNP G T T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR2A 3356 broad.mit.edu 37 13 47470003 47470003 + Silent SNP T A A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR2A 3356 hgsc.bcm.edu;ucsc.edu 37 13 47409628 47409628 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR2B 3357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 231973291 231973291 + Silent SNP A A G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR2C 3358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 113965887 113965887 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR3A 3359 broad.mit.edu 37 11 113860606 113860606 + 3'UTR SNP C A A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR3A 3359 hgsc.bcm.edu;ucsc.edu 37 11 113857420 113857420 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR3D 200909 broad.mit.edu 37 3 183756836 183756837 + 3'UTR INS - T T rs11274156 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR3D 200909 broad.mit.edu 37 3 183756837 183756838 + 3'UTR INS - GTCAGTCCAAATT GTCAGTCCAAATT rs66883074 unknown;alternate_allele TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR4 3360 hgsc.bcm.edu 37 5 147889404 147889404 + Missense_Mutation SNP G G A rs140360260 bycluster;byfrequency;by1000genomes TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR5A 3361 broad.mit.edu 37 7 154876817 154876818 + 3'UTR DEL AC - - rs10625950 bycluster;by1000genomes TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR6 3362 hgsc.bcm.edu 37 1 20005532 20005532 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HTR7 3363 broad.mit.edu 37 10 92501964 92501965 + 3'UTR INS - A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTR7 3363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 92508881 92508881 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTR7 3363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 92617162 92617162 + Silent SNP C C G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTRA3 94031 broad.mit.edu 37 4 8288470 8288470 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTRA4 203100 hgsc.bcm.edu;ucsc.edu 37 8 38840017 38840017 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HTT 3064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 3138012 3138012 + Silent SNP A A G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTT 3064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 3208255 3208255 + Silent SNP G G T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HTT 3064 broad.mit.edu;ucsc.edu 37 4 3208562 3208562 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HTT 3064 hgsc.bcm.edu;ucsc.edu 37 4 3117148 3117160 + Frame_Shift_Del DEL AGTTGGCTACTAA AGTTGGCTACTAA - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 AGTTGGCTACTAA AGTTGGCTACTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HUS1 3364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48015247 48015247 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HUS1 3364 hgsc.bcm.edu;ucsc.edu 37 7 48008881 48008881 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HUWE1 10075 broad.mit.edu 37 X 53586385 53586385 + Silent SNP G T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HUWE1 10075 broad.mit.edu;hgsc.bcm.edu 37 X 53674403 53674403 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HUWE1 10075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53579648 53579648 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HUWE1 10075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53612105 53612105 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HUWE1 10075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53615356 53615356 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HUWE1 10075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53675215 53675215 + Silent SNP A A C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq HUWE1 10075 hgsc.bcm.edu 37 X 53577912 53577912 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HUWE1 10075 hgsc.bcm.edu 37 X 53579772 53579772 + Silent SNP T T A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HUWE1 10075 hgsc.bcm.edu 37 X 53622278 53622278 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HUWE1 10075 hgsc.bcm.edu;ucsc.edu 37 X 53578289 53578289 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID HUWE1 10075 hgsc.bcm.edu;ucsc.edu 37 X 53585980 53585980 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID HVCN1 84329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111089162 111089162 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HVCN1 84329 hgsc.bcm.edu 37 12 111089052 111089052 + Silent SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HVCN1 84329 hgsc.bcm.edu 37 12 111099084 111099084 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HVCN1 84329 hgsc.bcm.edu;ucsc.edu 37 12 111089051 111089052 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYAL1 3373 hgsc.bcm.edu;ucsc.edu 37 3 50338003 50338003 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HYAL2 8692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50357640 50357640 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYAL4 23553 broad.mit.edu;hgsc.bcm.edu 37 7 123517219 123517219 + 3'UTR SNP G G C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYAL4 23553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123517205 123517205 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYAL4 23553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123517206 123517206 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYDIN 54768 broad.mit.edu 37 16 70841462 70841462 + 3'UTR SNP T C C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HYDIN 54768 broad.mit.edu 37 16 70889122 70889122 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HYDIN 54768 broad.mit.edu;hgsc.bcm.edu 37 16 70884503 70884503 + Silent SNP A A G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYDIN 54768 broad.mit.edu;ucsc.edu 37 16 70986456 70986456 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx HYLS1 219844 hgsc.bcm.edu;ucsc.edu 37 11 125769715 125769715 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HYOU1 10525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118916498 118916498 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYOU1 10525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118917418 118917418 + Silent SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYOU1 10525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118922276 118922276 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYOU1 10525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118925901 118925901 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq HYOU1 10525 hgsc.bcm.edu 37 11 118923033 118923033 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IARS2 55699 broad.mit.edu 37 1 220318982 220318982 + Silent SNP C T T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IARS2 55699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220316404 220316404 + Silent SNP C C T rs113314730 unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IARS2 55699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220318884 220318884 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IARS2 55699 hgsc.bcm.edu;ucsc.edu 37 1 220316384 220316384 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IARS 3376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95012199 95012199 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IARS 3376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95012201 95012201 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IARS 3376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95021264 95021264 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IARS 3376 broad.mit.edu;ucsc.edu 37 9 95027315 95027315 + Silent SNP G A A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IARS 3376 hgsc.bcm.edu;ucsc.edu 37 9 95050488 95050488 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IBSP 3381 broad.mit.edu 37 4 88733232 88733233 + 3'UTR INS - T T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IBSP 3381 broad.mit.edu 37 4 88733233 88733233 + 3'UTR DEL T - - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IBSP 3381 hgsc.bcm.edu;ucsc.edu 37 4 88732929 88732929 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IBTK 25998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 82925803 82925803 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IBTK 25998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 82950105 82950105 + Silent SNP A A T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IBTK 25998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 82950107 82950107 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IBTK 25998 hgsc.bcm.edu;ucsc.edu 37 6 82911132 82911132 + Intron SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ICA1 3382 broad.mit.edu;ucsc.edu 37 7 8178473 8178473 + Missense_Mutation SNP C G G rs143861719 byfrequency TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ICA1 3382 hgsc.bcm.edu 37 7 8167605 8167605 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ICA1L 130026 broad.mit.edu 37 2 203690197 203690197 + Intron DEL A - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ICA1L 130026 broad.mit.edu 37 2 203693916 203693916 + Intron DEL A - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ICAM1 3383 hgsc.bcm.edu 37 19 10394734 10394734 + Silent SNP T T C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ICAM3 3385 broad.mit.edu 37 19 10446140 10446141 + Intron DEL AC - - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ICMT 23463 hgsc.bcm.edu;ucsc.edu 37 1 6295024 6295024 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ICOSLG 23308 hgsc.bcm.edu;ucsc.edu 37 21 45648884 45648884 + 3'UTR SNP A A T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IDE 3416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94239093 94239093 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDE 3416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94297189 94297189 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDH1 3417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209104723 209104723 + Nonsense_Mutation SNP A A C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209108295 209108295 + Missense_Mutation SNP T G G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IDH3B 3420 broad.mit.edu 37 20 2644813 2644813 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IDH3B 3420 hgsc.bcm.edu;ucsc.edu 37 20 2641180 2641180 + Silent SNP C C A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IDH3G 3421 broad.mit.edu 37 X 153051518 153051518 + Intron SNP G A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IDH3G 3421 hgsc.bcm.edu 37 X 153055662 153055662 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IDI1 3422 hgsc.bcm.edu;ucsc.edu 37 10 1088643 1088643 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDI2 91734 broad.mit.edu 37 10 1065406 1065406 + 3'UTR SNP G A A rs41260144 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IDI2 91734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 1066837 1066837 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDI2 91734 hgsc.bcm.edu 37 10 1065491 1065491 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IDO1 3620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 39775606 39775606 + Splice_Site SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDO2 169355 broad.mit.edu;hgsc.bcm.edu 37 8 39836668 39836668 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDS 3423 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148577954 148577954 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDS 3423 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148586585 148586585 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IDUA 3425 broad.mit.edu 37 4 980873 980873 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IER2 9592 broad.mit.edu 37 19 13263983 13263983 + 5'UTR SNP T A A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IER2 9592 broad.mit.edu;hgsc.bcm.edu 37 19 13263991 13263991 + 5'UTR SNP T T C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IER5 51278 broad.mit.edu 37 1 181059036 181059036 + 3'UTR SNP C G G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFFO2 126917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19246190 19246190 + Silent SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFFO2 126917 hgsc.bcm.edu 37 1 19236957 19236957 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFFO2 126917 hgsc.bcm.edu;ucsc.edu 37 1 19235151 19235151 + Silent SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFI16 3428 broad.mit.edu 37 1 159002302 159002302 + 5'UTR SNP G A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFI16 3428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158988366 158988366 + Silent SNP G G A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFI27 3429 hgsc.bcm.edu;ucsc.edu 37 14 94581236 94581236 + Splice_Region SNP T T G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFI27L2 83982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94594972 94594972 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFI30 10437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18286140 18286140 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFI30 10437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18286174 18286174 + Silent SNP G G A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFI35 3430 broad.mit.edu 37 17 41158865 41158865 + 5'UTR SNP A G G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFI35 3430 broad.mit.edu 37 17 41158866 41158866 + 5'UTR SNP C A A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFI6 2537 broad.mit.edu 37 1 27992800 27992801 + 3'UTR INS - AAA AAA novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFI6(dist=16336) 0 hgsc.bcm.edu;ucsc.edu 37 1 28015060 28015060 + IGR SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIH1 64135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163144684 163144684 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIH1 64135 hgsc.bcm.edu;ucsc.edu 37 2 163150172 163150172 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFIT1 3434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91162071 91162071 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIT1 3434 hgsc.bcm.edu;ucsc.edu 37 10 91162803 91162803 + Silent SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIT2 3433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91065757 91065757 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIT2 3433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91066668 91066668 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIT3 3437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91092356 91092356 + 5'UTR SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFIT3 3437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91099779 91099779 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFITM1 8519 broad.mit.edu 37 11 314039 314039 + 5'UTR SNP T C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFITM2 10581 broad.mit.edu;hgsc.bcm.edu 37 11 308415 308415 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFLTD1 160492 broad.mit.edu 37 12 25706102 25706102 + 5'UTR SNP C T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNA1 3439 broad.mit.edu 37 9 21440985 21440985 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNA1 3439 hgsc.bcm.edu 37 9 21440579 21440579 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNA14 3448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 21239700 21239700 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNA16 3449 broad.mit.edu 37 9 21217253 21217253 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNA21 3452 broad.mit.edu 37 9 21166125 21166125 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNA5 3442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 21304871 21304871 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNA6 3443 hgsc.bcm.edu;ucsc.edu 37 9 21350656 21350656 + Silent SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNA8 3445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 21409486 21409486 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNA8 3445 hgsc.bcm.edu 37 9 21409246 21409246 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNAR1 3454 broad.mit.edu;hgsc.bcm.edu 37 21 34721421 34721421 + Silent SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNAR1 3454 hgsc.bcm.edu;ucsc.edu 37 21 34713364 34713364 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNB1 3456 hgsc.bcm.edu 37 9 21077712 21077712 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNB1 3456 hgsc.bcm.edu;ucsc.edu 37 9 21077494 21077494 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNGR1 3459 broad.mit.edu 37 6 137518967 137518967 + 3'UTR DEL A - - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNGR1 3459 broad.mit.edu 37 6 137518967 137518967 + 3'UTR DEL A - - novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNGR1 3459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 137519168 137519168 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNGR1 3459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 137528120 137528120 + Silent SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFNGR1 3459 hgsc.bcm.edu;ucsc.edu 37 6 137519571 137519571 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNGR2 3460 broad.mit.edu 37 21 34809434 34809434 + 3'UTR DEL T - - novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFNGR2 3460 hgsc.bcm.edu 37 21 34809269 34809269 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFNK 56832 hgsc.bcm.edu 37 9 27524364 27524365 + Frame_Shift_Ins INS - - TGTT novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFRD1 3475 broad.mit.edu 37 7 112090771 112090771 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFRD1 3475 broad.mit.edu 37 7 112097284 112097284 + Intron DEL A - - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFRD1 3475 broad.mit.edu;hgsc.bcm.edu 37 7 112097100 112097100 + Intron SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT122 55764 hgsc.bcm.edu 37 3 129233285 129233286 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT140 9742 broad.mit.edu 37 16 1570643 1570643 + Missense_Mutation SNP A T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFT140 9742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1616280 1616280 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT140 9742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1639724 1639724 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT140 9742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1652468 1652468 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT140 9742 hgsc.bcm.edu 37 16 1614096 1614096 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT140 9742 hgsc.bcm.edu 37 16 1636198 1636198 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT172 26160 broad.mit.edu 37 2 27694905 27694906 + Intron INS - A A rs112509425 unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFT172 26160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27704017 27704017 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT172 26160 hgsc.bcm.edu;ucsc.edu 37 2 27671791 27671791 + Silent SNP A A G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT172 26160 hgsc.bcm.edu;ucsc.edu 37 2 27684150 27684150 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT172 26160 hgsc.bcm.edu;ucsc.edu 37 2 27702943 27702946 + Frame_Shift_Del DEL ATAA ATAA - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 ATAA ATAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT27 11020 broad.mit.edu 37 22 37159081 37159081 + Intron SNP T C C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFT46 56912 hgsc.bcm.edu 37 11 118416217 118416217 + Intron SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT46 56912 hgsc.bcm.edu;ucsc.edu 37 11 118416581 118416581 + Intron SNP T T A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT46 56912 hgsc.bcm.edu;ucsc.edu 37 11 118427645 118427647 + In_Frame_Del DEL TCA TCA - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 TCA TCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT46 56912 broad.mit.edu 37 11 118430578 118430578 + 5'UTR SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFT52 51098 hgsc.bcm.edu;ucsc.edu 37 20 42242573 42242573 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT52 51098 hgsc.bcm.edu;ucsc.edu 37 20 42242577 42242577 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT57 55081 hgsc.bcm.edu;ucsc.edu 37 3 107910441 107910441 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT74 80173 hgsc.bcm.edu 37 9 26984278 26984278 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IFT80 57560 broad.mit.edu;ucsc.edu 37 3 160025463 160025463 + Missense_Mutation SNP C A A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IFT81 28981 hgsc.bcm.edu;ucsc.edu 37 12 110628765 110628766 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IFT88 8100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21205163 21205163 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGDCC3 9543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65621770 65621770 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGDCC3 9543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65624284 65624284 + Silent SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGDCC3 9543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65628159 65628159 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGDCC3 9543 hgsc.bcm.edu 37 15 65622992 65622992 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGDCC4 57722 broad.mit.edu 37 15 65674194 65674194 + 3'UTR DEL C - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGDCC4 57722 hgsc.bcm.edu 37 15 65681661 65681662 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF1 3479 broad.mit.edu 37 12 102811474 102811474 + 3'UTR SNP C T T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGF1 3479 broad.mit.edu 37 12 102811512 102811512 + 3'UTR SNP C G G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGF1R 3480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99192822 99192822 + Silent SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF1R 3480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99192876 99192876 + Silent SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF1R 3480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99482525 99482525 + Silent SNP C C T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IGF1R 3480 hgsc.bcm.edu;ucsc.edu 37 15 99482570 99482570 + Silent SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGF2 3481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 2154815 2154815 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2BP2 10644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 185393190 185393190 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2BP2 10644 hgsc.bcm.edu;ucsc.edu 37 3 185376129 185376129 + Silent SNP A A C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGF2BP3 10643 broad.mit.edu;hgsc.bcm.edu 37 7 23508130 23508130 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2R 3482 broad.mit.edu 37 6 160515133 160515133 + Intron SNP C A A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160461597 160461597 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160465623 160465623 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160468352 160468352 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160471666 160471666 + Silent SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160509177 160509177 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGF2R 3482 broad.mit.edu;ucsc.edu 37 6 160526024 160526024 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGFBP2 3485 broad.mit.edu 37 2 217526552 217526552 + Intron SNP C T T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGFBP2 3485 broad.mit.edu 37 2 217528566 217528566 + Intron DEL A - - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGFBP2 3485 hgsc.bcm.edu 37 2 217525490 217525491 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGFBP3 3486 hgsc.bcm.edu 37 7 45957039 45957039 + Splice_Site SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGFBP4 3487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38610249 38610249 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFBP6 3489 broad.mit.edu 37 12 53491636 53491638 + In_Frame_Del DEL GGA - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGFL1 374918 broad.mit.edu 37 19 46734248 46734248 + 3'UTR SNP A C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGFL4 444882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46543533 46543533 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFL4 444882 hgsc.bcm.edu 37 19 46543142 46543142 + 3'UTR SNP A A T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGFN1 91156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201190737 201190737 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201178849 201178849 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201179954 201179954 + Missense_Mutation SNP A A C rs77885442 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201179977 201179977 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201179984 201179984 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201180140 201180140 + Missense_Mutation SNP C C T rs58792551 byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201180222 201180222 + Silent SNP G G A rs28465285 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201180243 201180243 + Silent SNP A A G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201180361 201180361 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu 37 1 201181920 201181920 + 5'UTR SNP G G T rs12060924 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGFN1 91156 hgsc.bcm.edu;ucsc.edu 37 1 201176095 201176095 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGFN1 91156 hgsc.bcm.edu;ucsc.edu 37 1 201181639 201181639 + 5'Promoter SNP G G A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHD2-21 28502 hgsc.bcm.edu 37 14 106354450 106354450 + 5'Promoter SNP A A G rs113647906 by1000genomes TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHM 3507 hgsc.bcm.edu 37 14 106321657 106321657 + NCSD SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1-12 28471 hgsc.bcm.edu 37 14 106579137 106579137 + NCSD SNP C C A rs75210040 bycluster TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1-3 28473 hgsc.bcm.edu 37 14 106471353 106471353 + NCSD SNP C C T rs34069216 bycluster;byfrequency;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1-45 28466 hgsc.bcm.edu;ucsc.edu 37 14 106963374 106963374 + 5'Promoter SNP A A T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1OR15-3 646370 hgsc.bcm.edu 37 15 22466501 22466501 + 5'Promoter SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1OR15-9 390531 hgsc.bcm.edu 37 15 20170018 20170018 + NCSD SNP C C G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1OR15-9 390531 hgsc.bcm.edu 37 15 20170029 20170029 + NCSD SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1OR15-9 390531 hgsc.bcm.edu 37 15 20170103 20170103 + NCSD SNP A A G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1OR21-1 390530 hgsc.bcm.edu 37 21 10862853 10862853 + NCSD SNP G G A rs1961808 bycluster;byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV1OR21-1 390530 hgsc.bcm.edu 37 21 10862853 10862853 + NCSD SNP G G A rs1961808 bycluster;byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV3-43 28426 hgsc.bcm.edu 37 14 106926649 106926649 + 5'Promoter SNP C C A rs61999678 bycluster;byfrequency TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV3-64 28414 hgsc.bcm.edu;ucsc.edu 37 14 107114141 107114141 + NCSD SNP T T A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV4-28 28400 hgsc.bcm.edu 37 14 106780713 106780713 + NCSD SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV4-28 28400 hgsc.bcm.edu 37 14 106780740 106780740 + NCSD SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV4-31 28396 hgsc.bcm.edu 37 14 106805408 106805408 + NCSD SNP C C T rs61995642 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV4-31 28396 hgsc.bcm.edu 37 14 106805408 106805408 + NCSD SNP C C T rs61995642 bycluster;byfrequency;by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV4-39 28394 hgsc.bcm.edu;ucsc.edu 37 14 106878038 106878038 + NCSD SNP G G A rs113208890 bycluster;by1000genomes TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV4-61 28391 hgsc.bcm.edu 37 14 107095314 107095314 + NCSD SNP T T C rs182048984 unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV5-51 28388 hgsc.bcm.edu 37 14 107034822 107034822 + NCSD SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV5-51 28388 hgsc.bcm.edu 37 14 107034822 107034822 + NCSD SNP C C G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV5-51 28388 hgsc.bcm.edu 37 14 107034863 107034863 + NCSD SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV5-51 28388 hgsc.bcm.edu 37 14 107034967 107034967 + NCSD SNP T T C rs72686844 bycluster;by1000genomes TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV5-51 28388 hgsc.bcm.edu 37 14 107034967 107034967 + NCSD SNP T T C rs72686844 bycluster;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGHV5-51 28388 hgsc.bcm.edu;ucsc.edu 37 14 107034863 107034863 + NCSD SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGJ 3512 broad.mit.edu 37 4 71521932 71521932 + 3'UTR DEL A - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGJ 3512 broad.mit.edu 37 4 71521932 71521932 + 3'UTR DEL A - - novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGLL1 3543 broad.mit.edu;hgsc.bcm.edu 37 22 23915409 23915409 + 3'UTR SNP T T C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGLL1 3543 broad.mit.edu;ucsc.edu 37 22 23915501 23915501 + Silent SNP G A A rs1064418 bycluster;byfrequency TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGLL3P 91353 hgsc.bcm.edu 37 22 25714193 25714193 + upstream SNP C C T rs112211231 bycluster;byfrequency;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF10 285313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151154637 151154637 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF10 285313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151160939 151160939 + Silent SNP A A C novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF10 285313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151161389 151161389 + Silent SNP T T A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF10 285313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151165112 151165112 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF10 285313 hgsc.bcm.edu 37 3 151164336 151164336 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGSF10 285313 hgsc.bcm.edu;ucsc.edu 37 3 151160902 151160902 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGSF11 152404 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 118621704 118621704 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF11 152404 hgsc.bcm.edu;ucsc.edu 37 3 118621765 118621765 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF1 3547 broad.mit.edu 37 X 130409627 130409627 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF1 3547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 130410026 130410026 + Silent SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF1 3547 broad.mit.edu;ucsc.edu 37 X 130409967 130409967 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF1 3547 broad.mit.edu;ucsc.edu 37 X 130416649 130416649 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF21 84966 broad.mit.edu 37 1 18688657 18688657 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF22 283284 broad.mit.edu 37 11 18738394 18738394 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF22 283284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18729752 18729752 + Splice_Site SNP A A G novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF22 283284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18736130 18736130 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF22 283284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18738324 18738324 + Silent SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF22 283284 hgsc.bcm.edu;ucsc.edu 37 11 18738274 18738274 + Splice_Site SNP C C T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IGSF3 3321 broad.mit.edu 37 1 117131468 117131468 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF3 3321 broad.mit.edu;hgsc.bcm.edu 37 1 117156509 117156509 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF3 3321 hgsc.bcm.edu 37 1 117127342 117127343 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF3 3321 hgsc.bcm.edu 37 1 117142613 117142613 + Missense_Mutation SNP C C T rs76151115 bycluster;byfrequency TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF8 93185 broad.mit.edu;hgsc.bcm.edu 37 1 160063938 160063938 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF9 57549 broad.mit.edu 37 1 159896866 159896867 + 3'UTR INS - CA CA rs138111490 by1000genomes;alternate_allele TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF9 57549 broad.mit.edu 37 1 159896888 159896889 + 3'UTR DEL AG - - rs35733433 unknown;alternate_allele TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF9 57549 broad.mit.edu 37 1 159901558 159901558 + Intron SNP T G G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF9 57549 broad.mit.edu 37 1 159901558 159901558 + Intron SNP T G G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF9 57549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159897631 159897631 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF9B 22997 broad.mit.edu 37 11 133789678 133789678 + Silent SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF9B 22997 broad.mit.edu 37 11 133807380 133807380 + Silent SNP G A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IGSF9B 22997 hgsc.bcm.edu 37 11 133802056 133802056 + Silent SNP G G T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IGSF9B 22997 hgsc.bcm.edu;ucsc.edu 37 11 133807740 133807740 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IKBIP 121457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 99007799 99007799 + Missense_Mutation SNP A A G rs142312833 byfrequency TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKBIP 121457 broad.mit.edu 37 12 99007278 99007278 + 3'UTR SNP A T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IKBIP 121457 hgsc.bcm.edu 37 12 99007637 99007637 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IKBKAP 8518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111640376 111640376 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IKBKAP 8518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111659236 111659236 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IKBKE 9641 broad.mit.edu 37 1 206649530 206649530 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IKBKE 9641 hgsc.bcm.edu 37 1 206661295 206661295 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IKBKG 8517 broad.mit.edu 37 X 153770607 153770607 + Silent SNP G T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IKZF1 10320 broad.mit.edu 37 7 50467716 50467716 + Silent SNP C T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IKZF1 10320 broad.mit.edu;hgsc.bcm.edu 37 7 50467916 50467916 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKZF2 22807 broad.mit.edu;hgsc.bcm.edu 37 2 213878698 213878698 + Intron SNP T T A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKZF2 22807 hgsc.bcm.edu;ucsc.edu 37 2 213872194 213872194 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IKZF2 22807 hgsc.bcm.edu;ucsc.edu 37 2 213872774 213872774 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IKZF3 22806 broad.mit.edu;hgsc.bcm.edu 37 17 37922736 37922736 + Silent SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKZF3 22806 broad.mit.edu;hgsc.bcm.edu 37 17 37922737 37922737 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKZF3 22806 hgsc.bcm.edu;ucsc.edu 37 17 37948930 37948930 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKZF4 64375 hgsc.bcm.edu;ucsc.edu 37 12 56428493 56428493 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IKZF5 64376 broad.mit.edu 37 10 124753235 124753235 + 3'UTR SNP A G G novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IKZF5 64376 hgsc.bcm.edu;ucsc.edu 37 10 124753309 124753309 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL10 3586 broad.mit.edu 37 1 206945852 206945852 + 5'Flank SNP C A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL10 3586 hgsc.bcm.edu;ucsc.edu 37 1 206944318 206944318 + Silent SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL12RB1 3594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18191685 18191685 + Silent SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL12RB1 3594 hgsc.bcm.edu 37 19 18174754 18174754 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL12RB2 3595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67861487 67861487 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL12RB2 3595 hgsc.bcm.edu;ucsc.edu 37 1 67845752 67845761 + Frame_Shift_Del DEL CTGACAGCTG CTGACAGCTG - novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CTGACAGCTG CTGACAGCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL13 3596 hgsc.bcm.edu;ucsc.edu 37 5 131995185 131995185 + Intron SNP G G C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL13RA1 3597 hgsc.bcm.edu;ucsc.edu 37 X 117900881 117900882 + Frame_Shift_Ins INS - - AA novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL15 3600 broad.mit.edu 37 4 142654084 142654084 + 3'UTR SNP C A A rs10519613 bycluster;byfrequency;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL15 3600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 142651079 142651079 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL15 3600 hgsc.bcm.edu;ucsc.edu 37 4 142649075 142649075 + Intron SNP A A C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL15RA 3601 hgsc.bcm.edu 37 10 6001726 6001726 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL15RA 3601 hgsc.bcm.edu;ucsc.edu 37 10 6001735 6001735 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL16 3603 broad.mit.edu;hgsc.bcm.edu 37 15 81598949 81598949 + Intron SNP A A T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL16 3603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81552201 81552201 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL16 3603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81589274 81589274 + Silent SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL16 3603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81601012 81601012 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL16 3603 broad.mit.edu;ucsc.edu 37 15 81591913 81591913 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL16 3603 hgsc.bcm.edu;ucsc.edu 37 15 81582852 81582852 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL17A 3605 hgsc.bcm.edu;ucsc.edu 37 6 52054066 52054066 + Silent SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL17RA 23765 hgsc.bcm.edu 37 22 17589955 17589955 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL17RB 55540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53898830 53898830 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL17RC 84818 broad.mit.edu 37 3 9970113 9970113 + Silent SNP T G G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL17RC 84818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9960258 9960258 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL17RC 84818 hgsc.bcm.edu 37 3 9960273 9960273 + Missense_Mutation SNP G G C rs112627391 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL17RC 84818 hgsc.bcm.edu 37 3 9974300 9974300 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL17RC 84818 hgsc.bcm.edu;ucsc.edu 37 3 9965582 9965582 + Missense_Mutation SNP G G A rs75692599 bycluster;byfrequency;by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL17RE 132014 broad.mit.edu 37 3 9957050 9957050 + Silent SNP C T T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL18BP 10068 broad.mit.edu 37 11 71710115 71710115 + Intron DEL G - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL18BP 10068 broad.mit.edu 37 11 71710837 71710837 + Intron DEL C - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL18BP 10068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71711432 71711432 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL18R1 8809 hgsc.bcm.edu;ucsc.edu 37 2 103013085 103013085 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL18RAP 8807 broad.mit.edu 37 2 103035369 103035369 + 5'UTR DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL18RAP 8807 broad.mit.edu;hgsc.bcm.edu 37 2 103068649 103068649 + 3'UTR SNP C C T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL18RAP 8807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103067330 103067330 + Silent SNP C C T rs140183707 byfrequency TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL18RAP 8807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103068553 103068553 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL18RAP 8807 hgsc.bcm.edu;ucsc.edu 37 2 103067362 103067362 + Frame_Shift_Del DEL G G - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL18RAP 8807 hgsc.bcm.edu;ucsc.edu 37 2 103068343 103068343 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL19 29949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 206972280 206972280 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL19 29949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207014376 207014376 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1A 3552 broad.mit.edu 37 2 113532612 113532612 + 3'UTR SNP A C C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL1F10 84639 hgsc.bcm.edu 37 2 113832829 113832829 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1F5 0 broad.mit.edu 37 2 113820280 113820280 + 3'UTR SNP G A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL1F5 0 broad.mit.edu 37 2 113820292 113820292 + 3'UTR SNP C A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL1F8 0 broad.mit.edu 37 2 113785368 113785368 + Intron SNP G T T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL1F8 0 hgsc.bcm.edu;ucsc.edu 37 2 113788714 113788714 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1F9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 113736198 113736198 + Splice_Site SNP T T A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1R1 3554 hgsc.bcm.edu;ucsc.edu 37 2 102792950 102792950 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL1RAP 3556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 190321925 190321925 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1RAP 3556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 190366339 190366339 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1RAP 3556 hgsc.bcm.edu;ucsc.edu 37 3 190322001 190322001 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL1RAP 3556 hgsc.bcm.edu;ucsc.edu 37 3 190322001 190322001 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL1RAPL2 26280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 104961379 104961379 + Silent SNP C C G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1RAPL2 26280 hgsc.bcm.edu;ucsc.edu 37 X 103903657 103903657 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL1RAPL2 26280 hgsc.bcm.edu;ucsc.edu 37 X 104961395 104961395 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL1RL1 9173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 102956734 102956734 + Splice_Site SNP T T G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL1RL2 8808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 102851636 102851636 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL20RA 53832 broad.mit.edu 37 6 137322636 137322636 + 3'UTR SNP A G G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL20RA 53832 broad.mit.edu 37 6 137322636 137322636 + 3'UTR SNP A G G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL20RA 53832 broad.mit.edu 37 6 137322646 137322646 + 3'UTR SNP T G G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL20RB 53833 broad.mit.edu 37 3 136729130 136729130 + 3'UTR SNP C A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL20RB 53833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 136710849 136710849 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL21 59067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123542048 123542048 + Missense_Mutation SNP C C T rs141748932 bycluster;by1000genomes TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL21R 50615 broad.mit.edu 37 16 27460779 27460780 + 3'UTR INS - TG TG novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL21R 50615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27460474 27460474 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL21R 50615 broad.mit.edu;ucsc.edu 37 16 27455987 27455987 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL22 50616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 68646407 68646407 + Silent SNP C C A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL22 50616 hgsc.bcm.edu 37 12 68647174 68647174 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL22 50616 hgsc.bcm.edu 37 12 68647211 68647211 + Silent SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL22RA1 58985 hgsc.bcm.edu;ucsc.edu 37 1 24460780 24460780 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL23A 51561 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56733621 56733621 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL23R 149233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67705899 67705899 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL24 11009 hgsc.bcm.edu;ucsc.edu 37 1 207072689 207072689 + Silent SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL25 64806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23842465 23842465 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL25 64806 hgsc.bcm.edu 37 14 23844833 23844833 + Splice_Site SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL27RA 9466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14157046 14157046 + Silent SNP C C G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL27RA 9466 broad.mit.edu;ucsc.edu 37 19 14157347 14157347 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL27RA 9466 hgsc.bcm.edu;ucsc.edu 37 19 14157032 14157032 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL28A 0 broad.mit.edu 37 19 39759493 39759493 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL28A 0 broad.mit.edu;hgsc.bcm.edu 37 19 39759207 39759207 + 5'UTR SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL28B 0 broad.mit.edu;hgsc.bcm.edu 37 19 39735134 39735134 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL28B 0 hgsc.bcm.edu 37 19 39734352 39734352 + Missense_Mutation SNP C C T rs62120527 bycluster;byfrequency;by1000genomes TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL28RA 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24484205 24484205 + Silent SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL28RA 0 hgsc.bcm.edu 37 1 24485539 24485539 + Intron SNP T T C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL2RA 3559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6054846 6054846 + Silent SNP T T G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL2RA 3559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6067797 6067797 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL2RA 3559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6067802 6067802 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL2RB 3560 broad.mit.edu 37 22 37524097 37524097 + 3'UTR SNP A C C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL2RB 3560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37539570 37539570 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL31 386653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122656992 122656992 + Silent SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL31RA 133396 broad.mit.edu;hgsc.bcm.edu 37 5 55203210 55203210 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL31RA 133396 hgsc.bcm.edu 37 5 55164729 55164729 + Silent SNP A A C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL32 9235 hgsc.bcm.edu 37 16 3117425 3117425 + Intron SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL32 9235 hgsc.bcm.edu 37 16 3118029 3118029 + Intron SNP C C A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL3 3562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131396700 131396700 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL33 90865 broad.mit.edu;ucsc.edu 37 9 6251225 6251225 + Silent SNP C G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL33 90865 broad.mit.edu;ucsc.edu 37 9 6252967 6252967 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL33 90865 hgsc.bcm.edu 37 9 6256088 6256088 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL3RA 3563 broad.mit.edu 37 X 1501563 1501564 + 3'UTR INS - T T rs35294981 unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL3RA 3563 broad.mit.edu 37 X 1501563 1501564 + 3'UTR INS - T T rs35294981 unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL3RA 3563 broad.mit.edu 37 X 1501563 1501564 + 3'UTR INS - T T rs35294981 unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL4 3565 hgsc.bcm.edu 37 5 132018257 132018257 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL4I1 259307 hgsc.bcm.edu 37 19 50394326 50394326 + Silent SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL4R 3566 broad.mit.edu;hgsc.bcm.edu 37 16 27367167 27367167 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL4R 3566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27375116 27375116 + Missense_Mutation SNP G G T rs147700319 bycluster;by1000genomes;alternate_allele TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL6 3569 broad.mit.edu 37 7 22769440 22769443 + Intron DEL TTTG - - novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 TTTG TTTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL6 3569 hgsc.bcm.edu;ucsc.edu 37 7 22771126 22771126 + Silent SNP T T G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL6R 3570 hgsc.bcm.edu;ucsc.edu 37 1 154401718 154401718 + Silent SNP T T A novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL6ST 3572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55247810 55247810 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL6ST 3572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55256363 55256363 + Silent SNP G G T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL6ST 3572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55259325 55259325 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL6ST 3572 hgsc.bcm.edu 37 5 55264141 55264141 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL7R 3575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35871222 35871222 + Silent SNP G G T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL8 3576 broad.mit.edu;hgsc.bcm.edu 37 4 74606347 74606347 + 5'UTR SNP C C G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IL9 3578 hgsc.bcm.edu 37 5 135228122 135228122 + Silent SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IL9R 3581 broad.mit.edu 37 X 155233148 155233148 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL9R 3581 broad.mit.edu 37 X 155239824 155239824 + Missense_Mutation SNP A G G rs3852767 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IL9R 3581 broad.mit.edu 37 X 155239827 155239827 + Missense_Mutation SNP A G G rs3865220 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ILDR1 286676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121724198 121724198 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILDR2 387597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166908755 166908755 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILDR2 387597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166944470 166944470 + Silent SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILDR2 387597 hgsc.bcm.edu;ucsc.edu 37 1 166891956 166891956 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILF2 3608 broad.mit.edu 37 1 153634744 153634746 + 3'UTR DEL ATG - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 ATG ATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ILF2 3608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153637769 153637769 + Silent SNP A A G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILF3 3609 broad.mit.edu 37 19 10781221 10781221 + 5'UTR SNP C G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ILF3 3609 broad.mit.edu 37 19 10795850 10795850 + Intron DEL G - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ILF3 3609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10799269 10799269 + Silent SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILF3 3609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10799989 10799989 + 3'UTR SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILF3 3609 hgsc.bcm.edu 37 19 10793910 10793911 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILK 3611 hgsc.bcm.edu;ucsc.edu 37 11 6631379 6631379 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ILKAP 80895 broad.mit.edu 37 2 239079047 239079047 + 3'UTR DEL A - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ILKAP 80895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239102922 239102922 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILKAP 80895 hgsc.bcm.edu;ucsc.edu 37 2 239096830 239096830 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ILVBL 10994 broad.mit.edu;hgsc.bcm.edu 37 19 15227242 15227242 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ILVBL 10994 hgsc.bcm.edu 37 19 15228699 15228699 + Silent SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ILVBL 10994 hgsc.bcm.edu 37 19 15229993 15229993 + Silent SNP A A G rs1131177 bycluster;byfrequency;byhapmap;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IMMT 10989 broad.mit.edu 37 2 86389158 86389158 + Silent SNP A C C novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IMMT 10989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86385746 86385746 + Silent SNP A A T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IMMT 10989 hgsc.bcm.edu;ucsc.edu 37 2 86406617 86406617 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IMP5 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43923235 43923235 + Silent SNP G G A rs140813443 bycluster;by1000genomes TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMP5 0 hgsc.bcm.edu;ucsc.edu 37 17 43923077 43923077 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMPA2 3613 broad.mit.edu 37 18 12008391 12008391 + Intron SNP C T T rs17593321 bycluster;byfrequency;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IMPA2 3613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 11999101 11999101 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMPA2 3613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 11999109 11999109 + Silent SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMPA2 3613 hgsc.bcm.edu;ucsc.edu 37 18 12030440 12030440 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IMPDH1 3614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128049515 128049515 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMPDH2 3615 broad.mit.edu 37 3 49066862 49066862 + 5'UTR SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IMPDH2 3615 hgsc.bcm.edu;ucsc.edu 37 3 49065754 49065754 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IMPG1 3617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 76715159 76715159 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMPG2 50939 broad.mit.edu 37 3 101038459 101038459 + Silent SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IMPG2 50939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 100949947 100949947 + Silent SNP A A G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IMPG2 50939 broad.mit.edu;ucsc.edu 37 3 101038458 101038458 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IMPG2 50939 hgsc.bcm.edu;ucsc.edu 37 3 101023037 101023037 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62228715 62228715 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62237112 62237112 + Silent SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62288627 62288627 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62288675 62288675 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62330119 62330119 + Silent SNP A A G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62341007 62341007 + Silent SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62550236 62550236 + Silent SNP C C T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 hgsc.bcm.edu;ucsc.edu 37 1 62445728 62445728 + Intron SNP C C G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 hgsc.bcm.edu;ucsc.edu 37 1 62449168 62449168 + Intron SNP T T C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INADL 10207 hgsc.bcm.edu;ucsc.edu 37 1 62449476 62449476 + Intron SNP C C A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INCENP 3619 broad.mit.edu 37 11 61897352 61897352 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INCENP 3619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61897770 61897770 + Silent SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INCENP 3619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61897891 61897891 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INCENP 3619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61897892 61897892 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INCENP 3619 broad.mit.edu;ucsc.edu 37 11 61908398 61908398 + Missense_Mutation SNP T C C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING1 3621 broad.mit.edu 37 13 111367630 111367630 + 5'UTR DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING1 3621 broad.mit.edu 37 13 111367630 111367630 + 5'UTR DEL A - - novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING1 3621 broad.mit.edu 37 13 111367630 111367630 + 5'UTR DEL A - - novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING3 54556 broad.mit.edu 37 7 120590838 120590838 + 5'UTR SNP C T T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING3 54556 broad.mit.edu 37 7 120595899 120595899 + Intron SNP T A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING3 54556 broad.mit.edu 37 7 120596744 120596744 + Intron DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ING3 54556 hgsc.bcm.edu;ucsc.edu 37 7 120606668 120606668 + Intron SNP C C A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ING4 51147 hgsc.bcm.edu;ucsc.edu 37 12 6762198 6762198 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ING4 51147 hgsc.bcm.edu;ucsc.edu 37 12 6765975 6765975 + Intron SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ING5 84289 hgsc.bcm.edu 37 2 242661747 242661747 + Intron SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INHBA 3624 broad.mit.edu 37 7 41729120 41729120 + 3'UTR SNP T G G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INHBA 3624 broad.mit.edu 37 7 41729122 41729122 + 3'UTR SNP T G G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INHBA 3624 broad.mit.edu 37 7 41740067 41740067 + 5'UTR SNP A T T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INHBA 3624 broad.mit.edu 37 7 41740083 41740083 + 5'UTR DEL T - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INHBA 3624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 41729694 41729694 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INHBA 3624 hgsc.bcm.edu 37 7 41729840 41729840 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INHBB 3625 hgsc.bcm.edu 37 2 121107175 121107176 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INHBC 3626 hgsc.bcm.edu 37 12 57843412 57843413 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INHBE 83729 hgsc.bcm.edu;ucsc.edu 37 12 57850460 57850460 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INMT-FAM188B 100526825 broad.mit.edu;hgsc.bcm.edu 37 7 30931623 30931623 + RNA SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INO80 54617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41279359 41279359 + Silent SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INO80 54617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41364204 41364204 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INO80 54617 hgsc.bcm.edu 37 15 41280146 41280146 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INO80 54617 hgsc.bcm.edu;ucsc.edu 37 15 41313241 41313241 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INO80B 83444 broad.mit.edu 37 2 74682512 74682512 + Intron SNP C T T rs2268417 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INO80B 83444 hgsc.bcm.edu 37 2 74684832 74684832 + Silent SNP C C G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INO80D 54891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 206870035 206870035 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INO80D 54891 hgsc.bcm.edu 37 2 206882406 206882406 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INO80D 54891 hgsc.bcm.edu 37 2 206892941 206892941 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INPP4A 3631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99155379 99155379 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP4A 3631 hgsc.bcm.edu;ucsc.edu 37 2 99156037 99156037 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP4B 8821 broad.mit.edu 37 4 143348592 143348592 + Intron SNP A C C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP4B 8821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 143081662 143081662 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP4B 8821 hgsc.bcm.edu;ucsc.edu 37 4 143067033 143067034 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5A 3632 broad.mit.edu;ucsc.edu 37 10 134523924 134523924 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP5B 3633 broad.mit.edu 37 1 38327856 38327856 + 3'UTR SNP A T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP5B 3633 broad.mit.edu;hgsc.bcm.edu 37 1 38344007 38344007 + Intron SNP A A G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5B 3633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38343913 38343913 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5B 3633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38353034 38353034 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5D 3635 broad.mit.edu 37 2 234113207 234113207 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP5D 3635 hgsc.bcm.edu 37 2 234055004 234055004 + Splice_Region SNP T T C rs36189208 byfrequency;by1000genomes TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INPP5D 3635 hgsc.bcm.edu 37 2 234055004 234055004 + Splice_Region SNP T T C rs36189208 byfrequency;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INPP5E 56623 broad.mit.edu;hgsc.bcm.edu 37 9 139324071 139324071 + 3'UTR SNP G G C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5E 56623 hgsc.bcm.edu 37 9 139324835 139324835 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INPP5E 56623 hgsc.bcm.edu 37 9 139333264 139333264 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INPP5F 22876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 121567483 121567483 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5F 22876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 121567515 121567515 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5F 22876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 121587100 121587100 + Silent SNP T T A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPP5J 27124 broad.mit.edu 37 22 31520974 31520974 + Silent SNP A T T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP5K 51763 broad.mit.edu 37 17 1398611 1398611 + 3'UTR DEL C - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP5K 51763 broad.mit.edu 37 17 1412407 1412416 + Intron DEL GTGGGGGTTA - - rs11279273 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 GTGGGGGTTA GTGGGGGTTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INPP5K 51763 hgsc.bcm.edu 37 17 1401343 1401344 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPPL1 3636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71948448 71948448 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INPPL1 3636 hgsc.bcm.edu;ucsc.edu 37 11 71939276 71939278 + In_Frame_Del DEL AGA AGA - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSC 387755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 15170770 15170770 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSC 387755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 15222420 15222420 + Silent SNP G G C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSC 387755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 15267524 15267524 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSC 387755 hgsc.bcm.edu 37 11 15243190 15243190 + Silent SNP C C T rs61742947 bycluster;byfrequency;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSC 387755 hgsc.bcm.edu;ucsc.edu 37 11 15198716 15198716 + Splice_Region SNP T T C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INSC 387755 hgsc.bcm.edu;ucsc.edu 37 11 15198716 15198716 + Splice_Region SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INSIG1 3638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 155094505 155094505 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSL6 11172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5185530 5185530 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSM2 84684 hgsc.bcm.edu;ucsc.edu 37 14 36005119 36005119 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSR 3643 broad.mit.edu;hgsc.bcm.edu 37 19 7152929 7152929 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSR 3643 hgsc.bcm.edu 37 19 7184487 7184487 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID INSR 3643 hgsc.bcm.edu;ucsc.edu 37 19 7141807 7141807 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID INSRR 3645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156814334 156814334 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSRR 3645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156821582 156821582 + Splice_Site SNP T T C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INSRR 3645 broad.mit.edu;ucsc.edu 37 1 156812296 156812296 + Missense_Mutation SNP C T T rs138327752 bycluster;byfrequency;by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INSRR 3645 hgsc.bcm.edu 37 1 156823640 156823640 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS10 55174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 19687916 19687916 + Splice_Site SNP G G C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS1 26173 broad.mit.edu 37 7 1538900 1538900 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS1 26173 broad.mit.edu 37 7 1543553 1543553 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS1 26173 broad.mit.edu;hgsc.bcm.edu 37 7 1522154 1522154 + Intron SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS1 26173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 1523722 1523722 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS1 26173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 1539240 1539240 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS1 26173 hgsc.bcm.edu 37 7 1523682 1523682 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS2 57508 broad.mit.edu 37 17 59944674 59944674 + 3'UTR DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS2 57508 broad.mit.edu;hgsc.bcm.edu 37 17 60004006 60004006 + Silent SNP T T G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS3 65123 broad.mit.edu;hgsc.bcm.edu 37 1 153723568 153723568 + Intron SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS3 65123 hgsc.bcm.edu 37 1 153701140 153701140 + Silent SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS3 65123 hgsc.bcm.edu;ucsc.edu 37 1 153721235 153721235 + Intron SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS3 65123 hgsc.bcm.edu;ucsc.edu 37 1 153743221 153743221 + Intron SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS4 92105 broad.mit.edu 37 11 77689786 77689787 + Intron INS - A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS5 80789 broad.mit.edu 37 11 62414350 62414351 + 3'UTR INS - A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS5 80789 broad.mit.edu 37 11 62414351 62414351 + 3'UTR DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS5 80789 broad.mit.edu 37 11 62414351 62414351 + 3'UTR DEL A - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS6 26512 broad.mit.edu 37 13 51936274 51936274 + 3'UTR DEL T - - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS6 26512 broad.mit.edu;hgsc.bcm.edu 37 13 51969612 51969612 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS6 26512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 51943326 51943326 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS6 26512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 51948840 51948840 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS6 26512 hgsc.bcm.edu;ucsc.edu 37 13 51943308 51943308 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS7 25896 hgsc.bcm.edu 37 1 212161322 212161322 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS8 55656 broad.mit.edu 37 8 95892600 95892600 + 3'UTR SNP G T T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS8 55656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95861709 95861709 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTS8 55656 hgsc.bcm.edu;ucsc.edu 37 8 95850820 95850820 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS9 55756 broad.mit.edu 37 8 28625658 28625658 + 3'UTR SNP C G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS9 55756 broad.mit.edu 37 8 28651299 28651299 + Intron SNP A C C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS9 55756 broad.mit.edu;ucsc.edu 37 8 28625776 28625776 + Missense_Mutation SNP C G G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INTS9 55756 hgsc.bcm.edu 37 8 28645359 28645359 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INTS9 55756 hgsc.bcm.edu 37 8 28651299 28651299 + RNA SNP A A C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTU 27152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 128605608 128605608 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INTU 27152 broad.mit.edu;ucsc.edu 37 4 128632123 128632123 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx INVS 27130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 103002449 103002449 + Silent SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq INVS 27130 hgsc.bcm.edu 37 9 103054941 103054941 + Missense_Mutation SNP G G A rs76868679 bycluster;byfrequency;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID INVS 27130 hgsc.bcm.edu;ucsc.edu 37 9 103060232 103060232 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IP6K1 9807 broad.mit.edu;ucsc.edu 37 3 49775709 49775709 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IP6K2 51447 broad.mit.edu 37 3 48732030 48732030 + Intron SNP T A A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IP6K2 51447 broad.mit.edu;hgsc.bcm.edu 37 3 48725685 48725685 + 3'UTR SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IP6K2 51447 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48732607 48732607 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IP6K3 117283 broad.mit.edu 37 6 33690404 33690404 + 3'UTR SNP A G G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IP6K3 117283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33693343 33693343 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO11 51194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 61779118 61779118 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO11 51194 broad.mit.edu;ucsc.edu 37 5 61779841 61779841 + Silent SNP C T T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IPO13 9670 broad.mit.edu 37 1 44433044 44433044 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IPO13 9670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44422057 44422057 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO13 9670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44425962 44425962 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO4 79711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24651164 24651164 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO4 79711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24655987 24655987 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO4 79711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24657425 24657425 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO5 3843 broad.mit.edu 37 13 98654650 98654650 + Intron SNP A T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IPO5 3843 hgsc.bcm.edu;ucsc.edu 37 13 98666445 98666445 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO7 10527 broad.mit.edu;hgsc.bcm.edu 37 11 9446754 9446754 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO7 10527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9459375 9459375 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO7 10527 hgsc.bcm.edu;ucsc.edu 37 11 9424852 9424852 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IPO8 10526 hgsc.bcm.edu 37 12 30790090 30790090 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO9 55705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201843415 201843415 + Silent SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPO9 55705 broad.mit.edu;ucsc.edu 37 1 201845133 201845133 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IPO9 55705 hgsc.bcm.edu 37 1 201827588 201827588 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IPO9 55705 hgsc.bcm.edu 37 1 201827615 201827623 + In_Frame_Del DEL TGGCTGCTG TGGCTGCTG - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 TGGCTGCTG TGGCTGCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46180107 46180115 + In_Frame_Del DEL ATTGCTGAT ATTGCTGAT - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 ATTGCTGAT ATTGCTGAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46184982 46184982 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46184983 46184983 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46212019 46212019 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IPP 3652 hgsc.bcm.edu 37 1 46211923 46211924 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQCA1 79781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 237300665 237300665 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQCB1 9657 hgsc.bcm.edu 37 3 121544945 121544945 + Silent SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQCB1 9657 hgsc.bcm.edu;ucsc.edu 37 3 121545007 121545007 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQCE 23288 broad.mit.edu;hgsc.bcm.edu 37 7 2629606 2629606 + Silent SNP C C G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQCE 23288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 2645633 2645633 + Splice_Site SNP T T A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQCE 23288 hgsc.bcm.edu 37 7 2632756 2632756 + Silent SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQCF1 132141 hgsc.bcm.edu;ucsc.edu 37 3 51930931 51930931 + Intron SNP G G C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQCF2 389123 broad.mit.edu;ucsc.edu 37 3 51897084 51897084 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IQCG 84223 broad.mit.edu 37 3 197639882 197639882 + Intron DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IQCG 84223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197652965 197652965 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQCH 64799 hgsc.bcm.edu;ucsc.edu 37 15 67553613 67553613 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQGAP1 8826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91020913 91020913 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP1 8826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91025444 91025444 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP1 8826 hgsc.bcm.edu;ucsc.edu 37 15 90991847 90991847 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQGAP1 8826 hgsc.bcm.edu;ucsc.edu 37 15 91021009 91021009 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP1 8826 hgsc.bcm.edu;ucsc.edu 37 15 91021010 91021010 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP1 8826 hgsc.bcm.edu;ucsc.edu 37 15 91035819 91035819 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP2 10788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75866461 75866461 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP2 10788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75886273 75886273 + Silent SNP A A G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP2 10788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75896708 75896708 + Silent SNP C C G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP2 10788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75932958 75932958 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP2 10788 hgsc.bcm.edu;ucsc.edu 37 5 75886315 75886315 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP2 10788 hgsc.bcm.edu;ucsc.edu 37 5 75948664 75948664 + Intron SNP T T C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP3 128239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156498730 156498730 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQGAP3 128239 hgsc.bcm.edu;ucsc.edu 37 1 156501004 156501009 + In_Frame_Del DEL TGGAAC TGGAAC - novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 TGGAAC TGGAAC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQGAP3 128239 hgsc.bcm.edu;ucsc.edu 37 1 156521811 156521811 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IQSEC1 9922 broad.mit.edu 37 3 12949880 12949880 + Silent SNP G T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IQSEC2 23096 broad.mit.edu;hgsc.bcm.edu 37 X 53284001 53284001 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQSEC3 440073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 280284 280284 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQUB 154865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123119948 123119948 + Silent SNP A A C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQUB 154865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123142671 123142671 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IQUB 154865 hgsc.bcm.edu;ucsc.edu 37 7 123143012 123143012 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRAK1 3654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153278674 153278674 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRAK1 3654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153278782 153278782 + Missense_Mutation SNP C C T rs140583367 unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRAK1 3654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153283528 153283528 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRAK1BP1 134728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 79607842 79607842 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRAK1BP1 134728 hgsc.bcm.edu 37 6 79595172 79595172 + Intron SNP A A T rs79749552 bycluster TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRAK1BP1 134728 hgsc.bcm.edu;ucsc.edu 37 6 79607672 79607672 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRAK3 11213 broad.mit.edu 37 12 66648277 66648277 + 3'UTR DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRAK3 11213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 66638963 66638963 + Missense_Mutation SNP G G A rs146885838 unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRAK3 11213 hgsc.bcm.edu;ucsc.edu 37 12 66597547 66597547 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRAK4 51135 broad.mit.edu 37 12 44176279 44176279 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRAK4 51135 hgsc.bcm.edu 37 12 44180463 44180463 + Intron SNP T T G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IREB2 3658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78765670 78765670 + Missense_Mutation SNP G G T rs149685388 unknown;alternate_allele TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRF1 3659 hgsc.bcm.edu 37 5 131821389 131821389 + Silent SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRF2BP1 26145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46388204 46388204 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRF2BP2 359948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234743247 234743247 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRF2BP2 359948 hgsc.bcm.edu;ucsc.edu 37 1 234743339 234743339 + Silent SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRF7 3665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 614301 614301 + Silent SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRF8 3394 hgsc.bcm.edu 37 16 85946834 85946834 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRF9 10379 broad.mit.edu 37 14 24635590 24635590 + 3'UTR DEL T - - rs111232493 unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRF9 10379 broad.mit.edu;hgsc.bcm.edu 37 14 24635394 24635394 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRF9 10379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24633841 24633841 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRF9 10379 hgsc.bcm.edu;ucsc.edu 37 14 24632648 24632648 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IRGQ 126298 broad.mit.edu 37 19 44093268 44093269 + 3'UTR INS - G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRS1 3667 broad.mit.edu 37 2 227660037 227660037 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRS1 3667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227660084 227660084 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRS1 3667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227661146 227661146 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRS1 3667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227662246 227662246 + Silent SNP G G C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRS1 3667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227662870 227662870 + Silent SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq IRS2 8660 broad.mit.edu 37 13 110408476 110408476 + 3'UTR SNP T G G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRS2 8660 broad.mit.edu;hgsc.bcm.edu 37 13 110437883 110437883 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRS4 8471 hgsc.bcm.edu;ucsc.edu 37 X 107976255 107976258 + Frame_Shift_Del DEL CTGT CTGT - novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 CTGT CTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX1 79192 broad.mit.edu;hgsc.bcm.edu 37 5 3599934 3599934 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX1 79192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 3599432 3599432 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX2 153572 broad.mit.edu 37 5 2748714 2748714 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRX3 79191 broad.mit.edu;hgsc.bcm.edu 37 16 54319294 54319294 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX5 10265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 54966436 54966436 + Silent SNP C C A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX5 10265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 54967655 54967655 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX5(dist=27927) 0 hgsc.bcm.edu 37 16 54996322 54996322 + IGR SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX5(dist=27932) 0 hgsc.bcm.edu 37 16 54996327 54996327 + IGR SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX5(dist=27940) 0 hgsc.bcm.edu 37 16 54996335 54996335 + IGR SNP C C T rs184559014 by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX5(dist=28253) 0 hgsc.bcm.edu;ucsc.edu 37 16 54996648 54996648 + IGR SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IRX6 79190 broad.mit.edu 37 16 55362619 55362619 + Silent SNP T C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IRX6 79190 hgsc.bcm.edu 37 16 55360271 55360271 + Silent SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ISCU 23479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108960983 108960983 + Silent SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISCU 23479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108961053 108961053 + Intron SNP C C G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISCU 23479 hgsc.bcm.edu 37 12 108959179 108959179 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ISG15 9636 hgsc.bcm.edu 37 1 949654 949654 + Silent SNP A A G rs8997 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ISG20L2 81875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156697247 156697247 + Silent SNP C C T rs61742814 unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISL1 3670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 50685530 50685530 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISL1 3670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 50685635 50685635 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISL1 3670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 50685733 50685733 + Silent SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISL1 3670 hgsc.bcm.edu 37 5 50685624 50685624 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISL2 64843 broad.mit.edu 37 15 76634124 76634124 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISLR 3671 hgsc.bcm.edu 37 15 74467763 74467763 + Missense_Mutation SNP C C G rs138253214 unknown;alternate_allele TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ISM2 145501 broad.mit.edu 37 14 77941865 77941866 + 3'UTR INS - AGGGCCCTACC AGGGCCCTACC rs11276328 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISOC1 51015 broad.mit.edu 37 5 128430566 128430566 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISOC1 51015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 128441025 128441025 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISOC2 79763 broad.mit.edu 37 19 55964546 55964547 + 3'UTR INS - C C rs3214450 bycluster;by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISOC2 79763 broad.mit.edu 37 19 55964546 55964547 + 3'UTR INS - C C rs3214450 bycluster;by1000genomes TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISOC2 79763 broad.mit.edu 37 19 55964546 55964547 + 3'UTR INS - C C rs3214450 bycluster;by1000genomes TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISOC2 79763 broad.mit.edu 37 19 55964546 55964547 + 3'UTR INS - C C rs3214450 bycluster;by1000genomes TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ISPD 729920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 16445697 16445697 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISY1 57461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128848936 128848936 + Silent SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ISY1 57461 hgsc.bcm.edu 37 3 128875499 128875499 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ISY1 57461 hgsc.bcm.edu;ucsc.edu 37 3 128864701 128864701 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITCH 83737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33012330 33012330 + Silent SNP A A C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITCH 83737 broad.mit.edu;ucsc.edu 37 20 33026360 33026360 + Silent SNP A G G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITFG1 81533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 47493063 47493063 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITFG2 55846 hgsc.bcm.edu;ucsc.edu 37 12 2929366 2929366 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITFG2 55846 hgsc.bcm.edu;ucsc.edu 37 12 2932068 2932068 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA10 8515 broad.mit.edu;hgsc.bcm.edu 37 1 145534208 145534208 + Silent SNP G G A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ITGA10 8515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145530386 145530386 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA10 8515 hgsc.bcm.edu 37 1 145532550 145532550 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA11 22801 broad.mit.edu;hgsc.bcm.edu 37 15 68595444 68595444 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA11 22801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68596122 68596122 + Silent SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA11 22801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68628034 68628034 + Splice_Site SNP C C A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA11 22801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68642956 68642956 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA11 22801 hgsc.bcm.edu;ucsc.edu 37 15 68661592 68661592 + Silent SNP A A G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA1 3672 broad.mit.edu 37 5 52221113 52221113 + Silent SNP C G G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGA1 3672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 52221264 52221264 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA1 3672 broad.mit.edu;ucsc.edu 37 5 52145320 52145320 + Splice_Site SNP G T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGA1 3672 hgsc.bcm.edu;ucsc.edu 37 5 52206160 52206160 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA2 3673 broad.mit.edu 37 5 52386613 52386614 + 3'UTR INS - G G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGA2 3673 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 52363017 52363017 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA3 3675 broad.mit.edu 37 17 48148756 48148756 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGA3 3675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48148238 48148238 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA3 3675 hgsc.bcm.edu;ucsc.edu 37 17 48155654 48155654 + Intron SNP T T A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA4 3676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 182396472 182396472 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA5 3678 broad.mit.edu;hgsc.bcm.edu 37 12 54798566 54798566 + Silent SNP C C G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA5 3678 hgsc.bcm.edu 37 12 54792404 54792404 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA5 3678 hgsc.bcm.edu;ucsc.edu 37 12 54798984 54798984 + Silent SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA6 3655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173352130 173352130 + Silent SNP G G A rs141344340 unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA6 3655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173354250 173354250 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA6 3655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173354378 173354378 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA6 3655 hgsc.bcm.edu;ucsc.edu 37 2 173349850 173349850 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA6 3655 hgsc.bcm.edu;ucsc.edu 37 2 173356019 173356019 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA7 3679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56096858 56096858 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA8 8516 hgsc.bcm.edu 37 10 15647803 15647803 + Intron SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA8 8516 hgsc.bcm.edu;ucsc.edu 37 10 15714684 15714684 + Silent SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGA9 3680 broad.mit.edu;hgsc.bcm.edu 37 3 37670844 37670844 + Intron SNP T T G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGA9 3680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 37821430 37821442 + Frame_Shift_Del DEL ACTGTAACTTTAG ACTGTAACTTTAG - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 ACTGTAACTTTAG ACTGTAACTTTAG ACTGTAACTTTAG - ACTGTAACTTTAG ACTGTAACTTTAG Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ITGAD 3681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31435255 31435255 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAD 3681 broad.mit.edu;ucsc.edu 37 16 31424171 31424171 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGAE 3682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3657179 3657179 + Silent SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAE 3682 hgsc.bcm.edu;ucsc.edu 37 17 3643168 3643168 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAE 3682 hgsc.bcm.edu;ucsc.edu 37 17 3663516 3663516 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAE 3682 hgsc.bcm.edu;ucsc.edu 37 17 3667207 3667207 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAL 3683 broad.mit.edu;hgsc.bcm.edu 37 16 30507854 30507854 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAL 3683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30495241 30495241 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAL 3683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30505581 30505581 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAL 3683 hgsc.bcm.edu 37 16 30495168 30495168 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAM 3684 hgsc.bcm.edu 37 16 31309271 31309271 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAM 3684 hgsc.bcm.edu;ucsc.edu 37 16 31309149 31309149 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAM 3684 hgsc.bcm.edu;ucsc.edu 37 16 31336054 31336054 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAV 3685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 187500900 187500900 + Silent SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAV 3685 hgsc.bcm.edu;ucsc.edu 37 2 187521116 187521116 + Silent SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGAX 3687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31373943 31373943 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAX 3687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31388553 31388553 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGAX 3687 hgsc.bcm.edu 37 16 31373161 31373161 + Silent SNP G G T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB1 3688 broad.mit.edu;hgsc.bcm.edu 37 10 33199315 33199315 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB1 3688 broad.mit.edu;hgsc.bcm.edu 37 10 33199330 33199330 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB1 3688 hgsc.bcm.edu 37 10 33199253 33199258 + In_Frame_Del DEL CAGGAT CAGGAT - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 CAGGAT CAGGAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB1 3688 hgsc.bcm.edu 37 10 33217098 33217098 + Silent SNP G G A rs35057436 bycluster;byfrequency;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB1BP1 9270 broad.mit.edu 37 2 9552282 9552282 + Intron SNP C T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGB1BP1 9270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9548243 9548243 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB2 3689 broad.mit.edu;ucsc.edu 37 21 46321408 46321408 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGB3 3690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 45377874 45377874 + Silent SNP G G C novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB3 3690 hgsc.bcm.edu 37 17 45369718 45369719 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB3BP 23421 broad.mit.edu 37 1 63922885 63922885 + Intron DEL T - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGB3BP 23421 hgsc.bcm.edu;ucsc.edu 37 1 63988846 63988846 + 5'UTR SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB4 3691 broad.mit.edu;hgsc.bcm.edu 37 17 73729634 73729634 + Silent SNP G G A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB4 3691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73736440 73736440 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB4 3691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73745083 73745083 + Silent SNP C C T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB4 3691 hgsc.bcm.edu;ucsc.edu 37 17 73752790 73752790 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB5 3693 hgsc.bcm.edu 37 3 124482495 124482503 + In_Frame_Del DEL TTGTTGAAC TTGTTGAAC - rs150512726 bycluster;by1000genomes TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 TTGTTGAAC TTGTTGAAC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB5 3693 hgsc.bcm.edu 37 3 124527981 124527981 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB5 3693 hgsc.bcm.edu;ucsc.edu 37 3 124482495 124482503 + In_Frame_Del DEL TTGTTGAAC TTGTTGAAC - rs150512726 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TTGTTGAAC TTGTTGAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB5 3693 hgsc.bcm.edu;ucsc.edu 37 3 124536468 124536468 + Silent SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB6 3694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160994692 160994692 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB6 3694 broad.mit.edu;ucsc.edu 37 2 160983104 160983104 + Missense_Mutation SNP C A A rs143914557 unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITGB7 3695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53594099 53594099 + Silent SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB7 3695 hgsc.bcm.edu 37 12 53586257 53586257 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB7 3695 hgsc.bcm.edu 37 12 53591327 53591327 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITGB8 3696 broad.mit.edu;hgsc.bcm.edu 37 7 20438643 20438643 + Intron SNP T T G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITGB8 3696 hgsc.bcm.edu 37 7 20371478 20371478 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITIH1 3697 hgsc.bcm.edu;ucsc.edu 37 3 52825566 52825566 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITIH2 3698 broad.mit.edu 37 10 7791323 7791323 + 3'UTR SNP A G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITIH2 3698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7759749 7759749 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH2 3698 hgsc.bcm.edu;ucsc.edu 37 10 7780665 7780665 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITIH3 3699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52842629 52842629 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH3 3699 hgsc.bcm.edu 37 3 52833444 52833444 + Silent SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITIH4 3700 broad.mit.edu 37 3 52864693 52864693 + 5'UTR SNP T G G rs2071041 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITIH4 3700 broad.mit.edu;hgsc.bcm.edu 37 3 52858241 52858241 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH4 3700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52854657 52854657 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH4 3700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52858939 52858939 + Silent SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH4 3700 hgsc.bcm.edu;ucsc.edu 37 3 52853950 52853950 + Intron SNP T T A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5 80760 broad.mit.edu 37 10 7621991 7621991 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITIH5 80760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7682816 7682816 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5 80760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7683956 7683956 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5 80760 hgsc.bcm.edu 37 10 7608335 7608336 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5 80760 hgsc.bcm.edu;ucsc.edu 37 10 7627983 7627983 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5 80760 hgsc.bcm.edu;ucsc.edu 37 10 7697953 7697953 + Intron SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54785277 54785277 + Silent SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54785300 54785300 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITIH5L 0 hgsc.bcm.edu 37 X 54815020 54815020 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITK 3702 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156670646 156670646 + Silent SNP C C A rs142689933 unknown;alternate_allele TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ITK 3702 hgsc.bcm.edu;ucsc.edu 37 5 156641211 156641215 + Frame_Shift_Del DEL ATAAT ATAAT - novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 ATAAT ATAAT ATAAT - ATAAT ATAAT Unknown Valid Somatic Phase_I Capture 454 SOLID ITLN1 55600 hgsc.bcm.edu;ucsc.edu 37 1 160853223 160853223 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITM2A 9452 broad.mit.edu 37 X 78616443 78616444 + 3'UTR INS - T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITM2A 9452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78618083 78618083 + Silent SNP G G A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITM2B 9445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 48830433 48830438 + In_Frame_Del DEL GAAGAA GAAGAA - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 GAAGAA GAAGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITM2B 9445 hgsc.bcm.edu 37 13 48835350 48835350 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPKA 3706 hgsc.bcm.edu 37 15 41794987 41794987 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPKB 3707 broad.mit.edu 37 1 226836374 226836374 + Silent SNP T C C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITPKB 3707 broad.mit.edu;hgsc.bcm.edu 37 1 226834969 226834969 + Silent SNP G G A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPKB 3707 hgsc.bcm.edu 37 1 226924364 226924364 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPKB 3707 hgsc.bcm.edu 37 1 226924876 226924884 + In_Frame_Del DEL CTGCCGCTG CTGCCGCTG - rs147889095 bycluster;by1000genomes TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 CTGCCGCTG CTGCCGCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPKC 80271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41243662 41243662 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPKC 80271 hgsc.bcm.edu 37 19 41223765 41223765 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPR1 3708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 4669521 4669521 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR1 3708 hgsc.bcm.edu;ucsc.edu 37 3 4730230 4730230 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26540497 26540497 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26553126 26553126 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26839514 26839514 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26848561 26848561 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26848562 26848562 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR2 3709 hgsc.bcm.edu 37 12 26775308 26775308 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPR2 3709 hgsc.bcm.edu 37 12 26784955 26784955 + Silent SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPR2 3709 hgsc.bcm.edu 37 12 26834804 26834804 + Intron SNP T T C rs78447482 unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR2 3709 hgsc.bcm.edu;ucsc.edu 37 12 26589195 26589195 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPR2 3709 hgsc.bcm.edu;ucsc.edu 37 12 26703220 26703220 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPR3 3710 broad.mit.edu 37 6 33661519 33661519 + Intron SNP A C C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITPR3 3710 broad.mit.edu 37 6 33662647 33662647 + Intron SNP A G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITPR3 3710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33639879 33639879 + Silent SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ITPR3 3710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33657132 33657132 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR3 3710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33663430 33663430 + Intron SNP C C A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPR3 3710 hgsc.bcm.edu 37 6 33635706 33635706 + Silent SNP C C T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID ITPR3 3710 hgsc.bcm.edu 37 6 33662730 33662730 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID ITPR3 3710 hgsc.bcm.edu;ucsc.edu 37 6 33635679 33635679 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID ITPRIP 85450 hgsc.bcm.edu 37 10 106074435 106074435 + Missense_Mutation SNP G G A rs145628846 unknown;alternate_allele TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPRIPL1 150771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96992895 96992895 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPRIPL1 150771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96993809 96993809 + Silent SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITPRIPL1 150771 broad.mit.edu;ucsc.edu 37 2 96993737 96993737 + Silent SNP C G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITPRIPL1 150771 hgsc.bcm.edu;ucsc.edu 37 2 96993827 96993827 + Silent SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ITPRIPL2 162073 broad.mit.edu 37 16 19127313 19127313 + Silent SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITSN1 6453 broad.mit.edu 37 21 35153771 35153771 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITSN1 6453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 35144369 35144369 + Silent SNP G G C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN1 6453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 35254745 35254745 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN2 50618 broad.mit.edu 37 2 24524884 24524884 + Silent SNP T G G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ITSN2 50618 broad.mit.edu;hgsc.bcm.edu 37 2 24494732 24494732 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN2 50618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24469086 24469086 + Silent SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN2 50618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24535240 24535240 + Silent SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN2 50618 hgsc.bcm.edu;ucsc.edu 37 2 24435521 24435521 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN2 50618 hgsc.bcm.edu;ucsc.edu 37 2 24435589 24435589 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ITSN2 50618 hgsc.bcm.edu;ucsc.edu 37 2 24493591 24493591 + Silent SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IVD 3712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40707145 40707145 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IVL 3713 hgsc.bcm.edu 37 1 152882772 152882801 + In_Frame_Del DEL GAGCAGCAGGAGGGACAGCTGAAGCACCCG GAGCAGCAGGAGGGACAGCTGAAGCACCCG - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 GAGCAGCAGGAGGGACAGCTGAAGCACCCG GAGCAGCAGGAGGGACAGCTGAAGCACCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IVL 3713 hgsc.bcm.edu 37 1 152882772 152882801 + In_Frame_Del DEL GAGCAGCAGGAGGGACAGCTGAAGCACCCG GAGCAGCAGGAGGGACAGCTGAAGCACCCG - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 GAGCAGCAGGAGGGACAGCTGAAGCACCCG GAGCAGCAGGAGGGACAGCTGAAGCACCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IVL 3713 hgsc.bcm.edu;ucsc.edu 37 1 152882534 152882545 + In_Frame_Del DEL GCAGCAACAGCA GCAGCAACAGCA - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 GCAGCAACAGCA GCAGCAACAGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IVL 3713 hgsc.bcm.edu;ucsc.edu 37 1 152882546 152882547 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IVNS1ABP 10625 broad.mit.edu 37 1 185268681 185268681 + Intron SNP A T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IVNS1ABP 10625 broad.mit.edu;hgsc.bcm.edu 37 1 185267160 185267160 + 3'UTR SNP A A G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IWS1 55677 broad.mit.edu 37 2 128238565 128238565 + 3'UTR SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IWS1 55677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128252517 128252517 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IWS1 55677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128263302 128263302 + Silent SNP G G T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IWS1 55677 broad.mit.edu;ucsc.edu 37 2 128262532 128262532 + Missense_Mutation SNP T A A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IWS1 55677 broad.mit.edu;ucsc.edu 37 2 128262533 128262533 + Nonsense_Mutation SNP C A A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx IWS1 55677 hgsc.bcm.edu 37 2 128262648 128262648 + Silent SNP T T C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IYD 389434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150715251 150715251 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IYD 389434 hgsc.bcm.edu;ucsc.edu 37 6 150719261 150719261 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID IZUMO1 284359 broad.mit.edu;hgsc.bcm.edu 37 19 49245205 49245205 + Intron SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IZUMO1 284359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49246716 49246716 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IZUMO1 284359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49249008 49249008 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq IZUMO2 126123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50657881 50657881 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAG1 182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10627597 10627597 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAG2 3714 broad.mit.edu 37 14 105618587 105618587 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JAG2 3714 broad.mit.edu 37 14 105624079 105624079 + Nonsense_Mutation SNP C A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JAG2 3714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105617708 105617708 + Silent SNP C C T rs147768578 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAK1 3716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65344794 65344794 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq JAK1 3716 hgsc.bcm.edu;ucsc.edu 37 1 65310524 65310524 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAK1 3716 hgsc.bcm.edu;ucsc.edu 37 1 65330477 65330479 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAK1 3716 hgsc.bcm.edu;ucsc.edu 37 1 65335066 65335066 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID JAK2 3717 broad.mit.edu;hgsc.bcm.edu 37 9 5126444 5126444 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAK2 3717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5022145 5022145 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq JAK2 3717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5073717 5073717 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAK2 3717 hgsc.bcm.edu 37 9 5072516 5072516 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAK2 3717 hgsc.bcm.edu 37 9 5072549 5072549 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAK2 3717 hgsc.bcm.edu 37 9 5072560 5072560 + Silent SNP C C T rs146433914 bycluster;by1000genomes TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAK3 3718 broad.mit.edu 37 19 17947791 17947794 + Intron DEL ATAA - - rs3212757 bycluster;byfrequency;by1000genomes TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 ATAA ATAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JAK3 3718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17945490 17945490 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq JAK3 3718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17952457 17952457 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAK3 3718 broad.mit.edu;ucsc.edu 37 19 17954627 17954627 + Silent SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JAK3 3718 hgsc.bcm.edu 37 19 17945471 17945471 + Silent SNP G G A rs35458530 bycluster;byfrequency;by1000genomes TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAK3 3718 hgsc.bcm.edu 37 19 17945716 17945716 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAK3 3718 hgsc.bcm.edu 37 19 17954641 17954642 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAKMIP1 152789 broad.mit.edu 37 4 6055538 6055538 + 3'UTR SNP A T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JAKMIP1 152789 hgsc.bcm.edu 37 4 6086641 6086641 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAKMIP1 152789 hgsc.bcm.edu 37 4 6087193 6087193 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JAKMIP2 9832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147009293 147009293 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAKMIP2 9832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147040551 147040551 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAKMIP3 282973 broad.mit.edu 37 10 133961472 133961472 + Missense_Mutation SNP C T T rs138739966 by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JAKMIP3 282973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 133930691 133930691 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAKMIP3 282973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 133961488 133961488 + Silent SNP C C G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JAM2 58494 hgsc.bcm.edu;ucsc.edu 37 21 27084721 27084721 + Intron SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JARID2 3720 broad.mit.edu 37 6 15246614 15246614 + 5'UTR SNP G A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JARID2 3720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 15496611 15496611 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JARID2 3720 hgsc.bcm.edu;ucsc.edu 37 6 15513604 15513604 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JHDM1D 80853 hgsc.bcm.edu 37 7 139826594 139826594 + Missense_Mutation SNP A A G rs182952796 by1000genomes TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JHDM1D 80853 hgsc.bcm.edu;ucsc.edu 37 7 139798703 139798703 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JHDM1D 80853 hgsc.bcm.edu;ucsc.edu 37 7 139810990 139810990 + Intron SNP T T C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JKAMP 51528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59954452 59954452 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD1C 221037 broad.mit.edu 37 10 65139866 65139866 + Intron DEL T - - rs34420480 bycluster TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JMJD1C 221037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 64936178 64936178 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD1C 221037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 64954117 64954117 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD1C 221037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 64957276 64957276 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD1C 221037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 64968907 64968907 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD1C 221037 hgsc.bcm.edu 37 10 64975354 64975354 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JMJD1C 221037 hgsc.bcm.edu;ucsc.edu 37 10 64967020 64967020 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JMJD4 65094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227921679 227921679 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD6 23210 broad.mit.edu;hgsc.bcm.edu 37 17 74721938 74721938 + Splice_Site SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq JMJD6 23210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74719948 74719948 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq JMJD6 23210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74720100 74720100 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq JMJD6 23210 hgsc.bcm.edu;ucsc.edu 37 17 74717895 74717895 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM SOLID JMJD7 100137047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42127085 42127085 + Missense_Mutation SNP A A G rs148006565 unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD7 100137047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42128715 42128715 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMJD7-PLA2G4B 8681 broad.mit.edu 37 15 42136439 42136439 + Intron SNP A G G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JMJD7-PLA2G4B 8681 broad.mit.edu 37 15 42137191 42137191 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JMJD8 339123 broad.mit.edu;hgsc.bcm.edu 37 16 731897 731897 + 3'UTR SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMY 133746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78573870 78573870 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JMY 133746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78608277 78608277 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JOSD2 126119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51010902 51010902 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JPH1 56704 hgsc.bcm.edu 37 8 75157095 75157095 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JPH2 57158 broad.mit.edu 37 20 42788569 42788569 + Silent SNP G A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JPH3 57338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 87677876 87677876 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JRK 8629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143746492 143746492 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JRK 8629 hgsc.bcm.edu 37 8 143746088 143746089 + Frame_Shift_Del DEL CA CA - rs33951456 bycluster;by1000genomes TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JRKL 8690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 96124831 96124831 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JRKL 8690 hgsc.bcm.edu;ucsc.edu 37 11 96124291 96124291 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JSRP1 126306 broad.mit.edu;hgsc.bcm.edu 37 19 2252973 2252973 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JTB 10899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153949705 153949705 + Silent SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUB 0 hgsc.bcm.edu;ucsc.edu 37 14 23444054 23444054 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUB 0 hgsc.bcm.edu;ucsc.edu 37 14 23444255 23444260 + In_Frame_Del DEL TTGCAA TTGCAA - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 TTGCAA TTGCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUN 3725 broad.mit.edu;hgsc.bcm.edu 37 1 59248705 59248705 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUN 3725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 59247909 59247909 + Silent SNP G G C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUN 3725 hgsc.bcm.edu 37 1 59248076 59248076 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUNB 3726 broad.mit.edu;hgsc.bcm.edu 37 19 12903494 12903494 + Silent SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUNB 3726 hgsc.bcm.edu 37 19 12903618 12903618 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JUNB 3726 hgsc.bcm.edu 37 19 12903620 12903620 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID JUP 3728 broad.mit.edu 37 17 39783570 39783571 + Intron DEL CT - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx JUP 3728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39919273 39919273 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq JUP 3728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39927930 39927930 + Silent SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAL1 3730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 8504907 8504907 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KALRN 8997 broad.mit.edu 37 3 124303724 124303724 + Intron SNP C T T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KALRN 8997 broad.mit.edu 37 3 124438413 124438413 + 3'UTR SNP C T T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KALRN 8997 broad.mit.edu 37 3 124440025 124440025 + 3'UTR DEL T - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KALRN 8997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123987876 123987876 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KALRN 8997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124211627 124211627 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KALRN 8997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124215189 124215189 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KALRN 8997 hgsc.bcm.edu 37 3 124369683 124369683 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK1 23189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 732501 732501 + Silent SNP T T C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KANK1 23189 hgsc.bcm.edu;ucsc.edu 37 9 712578 712578 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK1 23189 hgsc.bcm.edu;ucsc.edu 37 9 745201 745201 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK2 25959 hgsc.bcm.edu;ucsc.edu 37 19 11277265 11277265 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK3 256949 broad.mit.edu 37 19 8387500 8387501 + 3'UTR DEL AG - - rs4147654 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK3 256949 hgsc.bcm.edu 37 19 8389893 8389895 + In_Frame_Del DEL TCC TCC - rs150055032 bycluster;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KANK3 256949 hgsc.bcm.edu 37 19 8389893 8389895 + In_Frame_Del DEL TCC TCC - rs150055032 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KANK4 163782 broad.mit.edu 37 1 62740313 62740313 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KANK4 163782 hgsc.bcm.edu 37 1 62740019 62740019 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK4 163782 hgsc.bcm.edu 37 1 62740019 62740019 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK4 163782 hgsc.bcm.edu 37 1 62740072 62740072 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KANK4 163782 hgsc.bcm.edu 37 1 62740524 62740524 + Silent SNP T G G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KARS 3735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 75678248 75678248 + Silent SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KARS 3735 hgsc.bcm.edu;ucsc.edu 37 16 75675563 75675563 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KAT2A 2648 hgsc.bcm.edu 37 17 40269163 40269163 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KAT2A 2648 hgsc.bcm.edu 37 17 40270030 40270068 + Frame_Shift_Del DEL CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAT2A 2648 hgsc.bcm.edu;ucsc.edu 37 17 40266241 40266241 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KAT2B 8850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 20153227 20153227 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAT2B 8850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 20153265 20153265 + Silent SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAT2B 8850 hgsc.bcm.edu 37 3 20113852 20113853 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAT2B 8850 hgsc.bcm.edu 37 3 20113852 20113853 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAT2B 8850 hgsc.bcm.edu;ucsc.edu 37 3 20113852 20113853 + Frame_Shift_Ins INS - - G novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAT5 10524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65480531 65480531 + Splice_Site SNP T T G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KATNA1 11104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 149944376 149944376 + Missense_Mutation SNP C C A rs142263647 unknown;alternate_allele TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KATNA1 11104 hgsc.bcm.edu 37 6 149918641 149918641 + Splice_Site SNP A A C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KATNB1 10300 broad.mit.edu 37 16 57775693 57775693 + Silent SNP C T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KATNB1 10300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57785950 57785950 + Silent SNP C C T rs141576914 unknown;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAZ 0 broad.mit.edu;hgsc.bcm.edu 37 1 15370643 15370643 + Silent SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAZ 0 broad.mit.edu;hgsc.bcm.edu 37 1 15428039 15428039 + Silent SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KAZ 0 broad.mit.edu 37 1 15440945 15440945 + Intron SNP G T T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KBTBD10 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170371427 170371427 + Silent SNP A A T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD12 166348 hgsc.bcm.edu;ucsc.edu 37 3 127642834 127642834 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KBTBD2 25948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 32909021 32909021 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD2 25948 broad.mit.edu;ucsc.edu 37 7 32909724 32909724 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KBTBD3 143879 hgsc.bcm.edu;ucsc.edu 37 11 105924485 105924486 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD4 55709 broad.mit.edu;hgsc.bcm.edu 37 11 47599123 47599123 + Silent SNP T T C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD4 55709 hgsc.bcm.edu;ucsc.edu 37 11 47599226 47599226 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD5 0 hgsc.bcm.edu 37 3 42727420 42727420 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KBTBD6 89890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41704758 41704758 + Silent SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD6 89890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41706026 41706026 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD6 89890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41706394 41706394 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD7 84078 broad.mit.edu 37 13 41768535 41768535 + 5'UTR SNP C G G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KBTBD7 84078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41767262 41767262 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67049417 67049417 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67049444 67049444 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67049590 67049590 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67054477 67054477 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67058722 67058722 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNA10 3744 hgsc.bcm.edu;ucsc.edu 37 1 111060345 111060345 + Silent SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNA1 3736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 5021702 5021702 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNA2 3737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111146166 111146166 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNA4 3739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30033589 30033589 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNA4 3739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30034211 30034211 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNA7 3743 broad.mit.edu 37 19 49575301 49575301 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNAB1 7881 broad.mit.edu 37 3 156009685 156009685 + Intron SNP C T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNAB1 7881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156009745 156009745 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNAB1 7881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156175241 156175241 + Splice_Site SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNAB1 7881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156249255 156249255 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNAB1 7881 hgsc.bcm.edu;ucsc.edu 37 3 156009880 156009880 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNAB2 8514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6157369 6157369 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNAB2 8514 hgsc.bcm.edu 37 1 6101899 6101899 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNAB3 9196 hgsc.bcm.edu 37 17 7827771 7827771 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNB1 3745 broad.mit.edu 37 20 47989322 47989323 + 3'UTR INS - T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNB1 3745 broad.mit.edu 37 20 47989458 47989458 + 3'UTR SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNB1 3745 broad.mit.edu 37 20 47989844 47989844 + Silent SNP A C C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNB2 9312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 73480273 73480273 + Missense_Mutation SNP T T A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNB2 9312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 73480522 73480522 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNB2 9312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 73848635 73848635 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNB2 9312 hgsc.bcm.edu 37 8 73849010 73849010 + Missense_Mutation SNP G G A rs140088625 unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNB2 9312 hgsc.bcm.edu;ucsc.edu 37 8 73849964 73849964 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNC1 3746 broad.mit.edu 37 11 17803886 17803887 + 3'UTR INS - A A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNC1 3746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17793557 17793557 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNC1 3746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17793714 17793714 + Missense_Mutation SNP T T C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNC1 3746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17793895 17793895 + Silent SNP T T C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNC2 3747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 75436883 75436883 + 3'UTR SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNC4 3749 broad.mit.edu;hgsc.bcm.edu 37 1 110766481 110766481 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNC4 3749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110768698 110768698 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCND2 3751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 119915314 119915314 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCND2 3751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 119915447 119915447 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCND2 3751 broad.mit.edu;ucsc.edu 37 7 119914961 119914961 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCND3 3752 broad.mit.edu 37 1 112524688 112524688 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCND3 3752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112319724 112319724 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCND3 3752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112524490 112524490 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCND3(dist=264929) 0 hgsc.bcm.edu;ucsc.edu 37 1 112796706 112796706 + IGR SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNE1L 23630 broad.mit.edu 37 X 108868069 108868069 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNF1 3754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11053935 11053935 + Silent SNP G G A novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNG2 26251 hgsc.bcm.edu 37 18 77659531 77659531 + Silent SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNG3 170850 hgsc.bcm.edu;ucsc.edu 37 2 42671444 42671444 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNG4 93107 broad.mit.edu 37 16 84270394 84270394 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNH1 3756 broad.mit.edu 37 1 211307396 211307396 + 5'UTR SNP C T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNH1 3756 hgsc.bcm.edu 37 1 210857394 210857394 + Silent SNP C C T novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNH2 3757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150675001 150675001 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH3 23416 hgsc.bcm.edu 37 12 49950251 49950251 + Missense_Mutation SNP C C G rs113209368 bycluster;byfrequency;by1000genomes TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNH3 23416 hgsc.bcm.edu 37 12 49950251 49950251 + Missense_Mutation SNP C C G rs113209368 bycluster;byfrequency;by1000genomes TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNH3 23416 hgsc.bcm.edu;ucsc.edu 37 12 49935453 49935453 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH3 23416 hgsc.bcm.edu;ucsc.edu 37 12 49950162 49950162 + Silent SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNH4 23415 broad.mit.edu 37 17 40315894 40315894 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNH4 23415 broad.mit.edu;ucsc.edu 37 17 40330118 40330118 + Silent SNP A G G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNH4 23415 hgsc.bcm.edu 37 17 40327694 40327694 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNH5 27133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 63447836 63447836 + Silent SNP A A T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH5 27133 broad.mit.edu;ucsc.edu 37 14 63473094 63473094 + Nonsense_Mutation SNP G T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNH6 81033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61607502 61607502 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH6 81033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61613155 61613155 + Silent SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH6 81033 hgsc.bcm.edu;ucsc.edu 37 17 61622984 61622984 + Silent SNP A A C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNH7 90134 broad.mit.edu;hgsc.bcm.edu 37 2 163253263 163253263 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163236424 163236424 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163241253 163241253 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163241431 163241431 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163279898 163279898 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163695012 163695012 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH8 131096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 19436689 19436689 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNH8 131096 hgsc.bcm.edu;ucsc.edu 37 3 19492864 19492864 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNIP1 30820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 170162829 170162829 + 3'UTR SNP T T A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNIP1 30820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 170162830 170162830 + 3'UTR SNP C C A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ10 3766 broad.mit.edu 37 1 160011200 160011200 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNJ11 3767 broad.mit.edu 37 11 17409650 17409650 + 5'UTR DEL C - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNJ12 3768 broad.mit.edu 37 17 21319528 21319528 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNJ12 3768 broad.mit.edu 37 17 21322860 21322861 + 3'UTR DEL TG - - rs112563903 unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNJ12 3768 hgsc.bcm.edu 37 17 21318741 21318741 + Silent SNP C C T rs75113504 unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ12 3768 hgsc.bcm.edu 37 17 21318760 21318760 + Missense_Mutation SNP G G T rs74880280 bycluster;byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21318912 21318912 + Silent SNP C C A rs35011501 bycluster;byfrequency TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319392 21319392 + Silent SNP G G A rs73979899 bycluster;byfrequency TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319392 21319392 + Silent SNP G G A rs73979899 bycluster;byfrequency TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319436 21319436 + Missense_Mutation SNP G G A rs77270326 bycluster;byfrequency TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319436 21319436 + Missense_Mutation SNP G G A rs77270326 bycluster;byfrequency TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319439 21319439 + Missense_Mutation SNP T T G rs76684759 bycluster;byfrequency TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319519 21319519 + Missense_Mutation SNP G G C rs78113532 bycluster;byfrequency TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319716 21319716 + Silent SNP G G A rs78135255 bycluster;byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ12 3768 hgsc.bcm.edu 37 17 21319786 21319786 + Missense_Mutation SNP G G A rs78547883 bycluster;byfrequency TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319786 21319786 + Missense_Mutation SNP G G A rs78547883 bycluster;byfrequency TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ12 3768 hgsc.bcm.edu 37 17 21319845 21319845 + Silent SNP C C T rs72846670 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ15 3772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 39671492 39671492 + Missense_Mutation SNP T T G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ15 3772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 39671523 39671523 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ16 3773 hgsc.bcm.edu;ucsc.edu 37 17 68128601 68128601 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ18 100134444 hgsc.bcm.edu 37 17 21318663 21318663 + Silent SNP G G A rs72846666 bycluster;byfrequency;by1000genomes TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ18 100134444 hgsc.bcm.edu 37 17 21318741 21318741 + Silent SNP C C T rs75113504 unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ18 100134444 hgsc.bcm.edu 37 17 21318760 21318760 + Missense_Mutation SNP G G T rs74880280 bycluster;byfrequency TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ18 100134444 hgsc.bcm.edu 37 17 21319519 21319519 + Missense_Mutation SNP G G C rs78113532 bycluster;byfrequency TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ18 100134444 hgsc.bcm.edu 37 17 21319527 21319527 + Silent SNP C C T rs80022364 bycluster;byfrequency TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ18 100134444 hgsc.bcm.edu 37 17 21319743 21319743 + Silent SNP A A G rs76267885 byfrequency TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ2 3759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 68171453 68171453 + Silent SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ2 3759 broad.mit.edu;ucsc.edu 37 17 68171679 68171679 + Missense_Mutation SNP G A A rs140147979 unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNJ2 3759 hgsc.bcm.edu;ucsc.edu 37 17 68172170 68172170 + Silent SNP C C G novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ2(dist=755619) 0 hgsc.bcm.edu 37 17 68931802 68931802 + IGR SNP C C A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ3 3760 broad.mit.edu 37 2 155555946 155555946 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNJ3 3760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155555495 155555495 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ3 3760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155555522 155555522 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNJ4 3761 hgsc.bcm.edu 37 22 38823676 38823676 + Silent SNP C C G rs77032485 bycluster;byfrequency TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ4 3761 hgsc.bcm.edu 37 22 38823945 38823945 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNJ8 3764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21918783 21918783 + Silent SNP G G T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK10 54207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88658594 88658594 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK1 3775 hgsc.bcm.edu 37 1 233802464 233802464 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNK16 83795 hgsc.bcm.edu 37 6 39285598 39285598 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNK17 89822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39267378 39267378 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK18 338567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118957020 118957020 + Silent SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK18 338567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118969176 118969176 + Missense_Mutation SNP G G A rs139101102 unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK2 3776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 215408257 215408257 + Silent SNP G G A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK2 3776 hgsc.bcm.edu 37 1 215259812 215259812 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNK4 50801 hgsc.bcm.edu 37 11 64065101 64065101 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNK5 8645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39162007 39162007 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK5 8645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39162421 39162421 + Silent SNP C C G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNK9 51305 hgsc.bcm.edu 37 8 140630792 140630792 + Silent SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNK9 51305 hgsc.bcm.edu 37 8 140631095 140631095 + Silent SNP G G A rs192943243 by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNMA1 3778 broad.mit.edu 37 10 78709126 78709126 + Splice_Site SNP T C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNMA1 3778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 78872137 78872137 + Silent SNP C C A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNMA1 3778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 78872140 78872140 + Silent SNP G G A rs79713097 bycluster;byfrequency;by1000genomes TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNMA1 3778 hgsc.bcm.edu 37 10 78647067 78647067 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNMA1 3778 hgsc.bcm.edu;ucsc.edu 37 10 78669819 78669819 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNMB1 3779 broad.mit.edu 37 5 169810630 169810630 + Intron SNP T C C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNMB3 27094 broad.mit.edu 37 3 178984772 178984773 + 5'UTR INS - TC TC novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNMB4 27345 hgsc.bcm.edu 37 12 70760617 70760617 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNMB4 27345 hgsc.bcm.edu 37 12 70760620 70760621 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNN1 3780 broad.mit.edu 37 19 18104303 18104303 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNN1 3780 hgsc.bcm.edu;ucsc.edu 37 19 18100537 18100537 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNN2 3781 broad.mit.edu 37 5 113698631 113698632 + In_Frame_Ins INS - GCC GCC novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNN2 3781 broad.mit.edu 37 5 113831942 113831942 + 3'UTR SNP T G G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNN2 3781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 113698884 113698884 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNN2 3781 hgsc.bcm.edu 37 5 113698631 113698632 + In_Frame_Ins INS - - GCC novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNN3 3782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154705482 154705482 + Silent SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNN3 3782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154744736 154744736 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNN3 3782 hgsc.bcm.edu 37 1 154705507 154705507 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNN4 3783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44273604 44273604 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNN4 3783 hgsc.bcm.edu;ucsc.edu 37 19 44276215 44276215 + Silent SNP G G C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNQ1 3784 broad.mit.edu 37 11 2482706 2482707 + Intron INS - C C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNQ1 3784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 2606466 2606466 + Silent SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ1 3784 hgsc.bcm.edu;ucsc.edu 37 11 2866229 2866229 + Intron SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNQ1(dist=7073) 0 hgsc.bcm.edu 37 11 2877413 2877413 + IGR SNP T T A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ2 3785 broad.mit.edu 37 20 62050979 62050979 + Missense_Mutation SNP G A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNQ2 3785 broad.mit.edu;hgsc.bcm.edu 37 20 62065065 62065065 + 3'UTR SNP T T G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ2 3785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62038115 62038115 + Missense_Mutation SNP A A G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ3 3786 broad.mit.edu 37 8 133492917 133492918 + 5'UTR INS - C C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNQ3 3786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 133141908 133141908 + Silent SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ3 3786 hgsc.bcm.edu 37 8 133492523 133492523 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ3 3786 hgsc.bcm.edu;ucsc.edu 37 8 133142094 133142094 + Silent SNP G G A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNQ3 3786 hgsc.bcm.edu;ucsc.edu 37 8 133157907 133157907 + Intron SNP G G C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNQ5 56479 broad.mit.edu 37 6 73904281 73904281 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNQ5 56479 broad.mit.edu;ucsc.edu 37 6 73904280 73904280 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCNRG 283518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 50594550 50594550 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNS3 3790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 18113665 18113665 + Missense_Mutation SNP G G A rs150320186 unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNS3 3790 hgsc.bcm.edu 37 2 18113361 18113362 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNS3 3790 hgsc.bcm.edu 37 2 18113407 18113407 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNT1 57582 broad.mit.edu;hgsc.bcm.edu 37 9 138662896 138662896 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNT1 57582 broad.mit.edu;hgsc.bcm.edu 37 9 138679959 138679959 + Intron SNP T T A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNT2 343450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196250087 196250087 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNT2 343450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196254849 196254849 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNT2 343450 hgsc.bcm.edu 37 1 196448294 196448294 + Intron SNP A A T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNU1 157855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 36746044 36746044 + Intron SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNU1 157855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 36790510 36790510 + Silent SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNU1 157855 hgsc.bcm.edu;ucsc.edu 37 8 36666317 36666317 + Splice_Region SNP C C A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNU1 157855 hgsc.bcm.edu;ucsc.edu 37 8 36694387 36694387 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCNV2 169522 broad.mit.edu;hgsc.bcm.edu 37 9 2718197 2718197 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNV2 169522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2729474 2729474 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCNV2 169522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2729659 2729659 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCP 375616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128519646 128519646 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD10 83892 broad.mit.edu 37 12 109889372 109889372 + 3'UTR SNP G C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCTD10 83892 hgsc.bcm.edu 37 12 109907503 109907503 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCTD12 115207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77459423 77459423 + Silent SNP C C G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD1 284252 hgsc.bcm.edu 37 18 24127779 24127779 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCTD14 65987 broad.mit.edu;ucsc.edu 37 11 77727894 77727894 + Nonsense_Mutation SNP G T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCTD16 57528 hgsc.bcm.edu 37 5 143586839 143586839 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCTD17 79734 hgsc.bcm.edu 37 22 37455447 37455447 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCTD18 130535 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201354993 201354993 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD18 130535 hgsc.bcm.edu;ucsc.edu 37 2 201371733 201371733 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD19 146212 broad.mit.edu;ucsc.edu 37 16 67324887 67324887 + Silent SNP G C C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCTD19 146212 hgsc.bcm.edu 37 16 67327642 67327642 + Missense_Mutation SNP C C T rs145649592 by1000genomes TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCTD19 146212 hgsc.bcm.edu 37 16 67338321 67338321 + Intron SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD19 146212 hgsc.bcm.edu;ucsc.edu 37 16 67327544 67327545 + In_Frame_Ins INS - - GCTCCA novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD20 222658 broad.mit.edu;ucsc.edu 37 6 36442785 36442785 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCTD21 283219 hgsc.bcm.edu;ucsc.edu 37 11 77885169 77885169 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KCTD2 23510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73058235 73058235 + Silent SNP C C G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD6 200845 broad.mit.edu 37 3 58487415 58487416 + 3'UTR INS - T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCTD7 154881 broad.mit.edu 37 7 66106882 66106882 + 3'UTR DEL A - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KCTD7 154881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 66103318 66103318 + Nonsense_Mutation SNP C C G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD7 154881 hgsc.bcm.edu;ucsc.edu 37 7 66103415 66103415 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD7 154881 hgsc.bcm.edu;ucsc.edu 37 7 66103415 66103415 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KCTD8 386617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 44450161 44450161 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDELC1 79070 hgsc.bcm.edu;ucsc.edu 37 13 103450921 103450921 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDELR1 10945 hgsc.bcm.edu 37 19 48893838 48893838 + Intron SNP C C G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDELR2 11014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6502730 6502730 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDELR2 11014 hgsc.bcm.edu 37 7 6505900 6505900 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDELR3 11015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38877247 38877247 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDELR3 11015 hgsc.bcm.edu;ucsc.edu 37 22 38877232 38877235 + Frame_Shift_Del DEL TCTA TCTA - novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 TCTA TCTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM1A 23028 hgsc.bcm.edu;ucsc.edu 37 1 23392608 23392608 + Intron SNP C C T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM2A 22992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67017906 67017906 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM2A 22992 hgsc.bcm.edu 37 11 67017709 67017709 + Silent SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM2A 22992 hgsc.bcm.edu;ucsc.edu 37 11 67021798 67021798 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM2B 84678 broad.mit.edu 37 12 121932322 121932322 + Intron SNP C T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM2B 84678 broad.mit.edu;hgsc.bcm.edu 37 12 121868005 121868005 + 3'UTR SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM2B 84678 hgsc.bcm.edu;ucsc.edu 37 12 121972425 121972429 + Frame_Shift_Del DEL ACCAA ACCAA - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 ACCAA ACCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM2B 84678 hgsc.bcm.edu;ucsc.edu 37 12 122013702 122013702 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM3A 55818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86712976 86712976 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM3B 51780 broad.mit.edu 37 5 137771430 137771430 + 3'UTR SNP C A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM3B 51780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137708520 137708520 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM4A 9682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44128741 44128741 + Silent SNP T T C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4A 9682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44154664 44154664 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4A 9682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44159696 44159696 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4B 23030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5137677 5137677 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4B 23030 hgsc.bcm.edu 37 19 5077475 5077475 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM4C 23081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 7013979 7013979 + Silent SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4C 23081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 7015920 7015920 + Silent SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM4D 55693 broad.mit.edu;hgsc.bcm.edu 37 11 94730799 94730799 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4D 55693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94731985 94731985 + Silent SNP T T A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM4DL 0 broad.mit.edu 37 11 94758636 94758636 + 5'UTR SNP G T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM4DL 0 broad.mit.edu 37 11 94759338 94759338 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM5A 5927 broad.mit.edu 37 12 393122 393123 + 3'UTR DEL AA - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM5A 5927 broad.mit.edu 37 12 394401 394401 + 3'UTR SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM5A 5927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 442697 442697 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5A 5927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 442728 442728 + Silent SNP A A G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5A 5927 hgsc.bcm.edu;ucsc.edu 37 12 416170 416170 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM5A 5927 hgsc.bcm.edu;ucsc.edu 37 12 419082 419082 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM5B 10765 broad.mit.edu 37 1 202697912 202697913 + 3'UTR DEL AC - - rs138976460 bycluster;by1000genomes TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM5B 10765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202725626 202725626 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5B 10765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202733213 202733213 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5B 10765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202743819 202743819 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5B 10765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202777266 202777266 + Silent SNP G G C rs150129345 byfrequency;alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5B 10765 hgsc.bcm.edu 37 1 202710614 202710614 + Silent SNP T T G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM5B 10765 hgsc.bcm.edu;ucsc.edu 37 1 202710756 202710756 + Frame_Shift_Del DEL T T - novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu 37 X 53224222 53224222 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu 37 X 53227751 53227751 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu 37 X 53227796 53227796 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu 37 X 53246339 53246339 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53225887 53225887 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53228204 53228204 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53228213 53228213 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53231127 53231127 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53239736 53239736 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53239905 53239905 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53253992 53253992 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G G - G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 broad.mit.edu;ucsc.edu 37 X 53230876 53230877 + Frame_Shift_Ins INS - T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 - - - T - - Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx KDM5C 8242 broad.mit.edu;ucsc.edu 37 X 53244975 53244975 + Splice_Site SNP A G G novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx KDM5C 8242 hgsc.bcm.edu 37 X 53222460 53222460 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4710-01A-01W-1528-10 TCGA-B0-4710-11A-02W-1528-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq KDM5C 8242 hgsc.bcm.edu 37 X 53223905 53223905 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDM5C 8242 hgsc.bcm.edu 37 X 53228259 53228259 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID KDM5C 8242 hgsc.bcm.edu 37 X 53230752 53230752 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID KDM5C 8242 hgsc.bcm.edu 37 X 53230855 53230855 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID KDM5C 8242 hgsc.bcm.edu 37 X 53240705 53240705 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM SOLID KDM5C 8242 hgsc.bcm.edu 37 X 53245090 53245090 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID KDM5C 8242 hgsc.bcm.edu 37 X 53250107 53250107 + Splice_Region SNP G G C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM SOLID KDM5C 8242 hgsc.bcm.edu;ucsc.edu 37 X 53228214 53228214 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID KDM5C 8242 hgsc.bcm.edu;ucsc.edu 37 X 53247129 53247135 + Frame_Shift_Del DEL CCACCTT CCACCTT - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 CCACCTT CCACCTT CCACCTT - CCACCTT CCACCTT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq KDM5D 8284 broad.mit.edu;ucsc.edu 37 Y 21903350 21903350 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KDM5D 8284 hgsc.bcm.edu 37 Y 21868427 21868427 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM6A 7403 broad.mit.edu;hgsc.bcm.edu 37 X 44928976 44928976 + Silent SNP G G A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM6A 7403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44879876 44879878 + In_Frame_Del DEL GGT GGT - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 GGT GGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM6A 7403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44949174 44949174 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDM6A 7403 hgsc.bcm.edu 37 X 44732886 44732886 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1392-10 TCGA-B0-5075-11A-01D-1392-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq KDM6A 7403 hgsc.bcm.edu 37 X 44922760 44922760 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM6B 23135 hgsc.bcm.edu 37 17 7753240 7753240 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM6B 23135 hgsc.bcm.edu 37 17 7753474 7753474 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDM6B 23135 hgsc.bcm.edu 37 17 7755027 7755027 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KDR 3791 broad.mit.edu;hgsc.bcm.edu 37 4 55973949 55973949 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KDR 3791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55955623 55955623 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDR 3791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55956163 55956163 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDR 3791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55979581 55979581 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A A - A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KDR 3791 hgsc.bcm.edu;ucsc.edu 37 4 55968633 55968633 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID KEAP1 9817 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10602352 10602352 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KEAP1 9817 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10610395 10610395 + Silent SNP A A G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KEAP1 9817 broad.mit.edu;ucsc.edu 37 19 10599946 10599946 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KEL 3792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142649604 142649604 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KEL 3792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142655413 142655413 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KGFLP2 654466 broad.mit.edu 37 9 41962424 41962424 + RNA SNP T A A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KHDC1 80759 broad.mit.edu 37 6 74000432 74000436 + Intron DEL TCACT - - novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 TCACT TCACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KHDRBS1 10657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32504213 32504213 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KHDRBS2 202559 broad.mit.edu;ucsc.edu 37 6 62604655 62604655 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KHDRBS2 202559 hgsc.bcm.edu 37 6 62604617 62604617 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KHDRBS3 10656 hgsc.bcm.edu;ucsc.edu 37 8 136533552 136533552 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KHK 3795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27317803 27317803 + Splice_Site SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KHK 3795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27320383 27320383 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KHK 3795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27320391 27320391 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KHK 3795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27322321 27322321 + Silent SNP C C T rs142428157 byfrequency TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KHK 3795 hgsc.bcm.edu 37 2 27319663 27319663 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KHNYN 23351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24901665 24901665 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KHSRP 8570 hgsc.bcm.edu;ucsc.edu 37 19 6421360 6421360 + Intron SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0020 9933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2823805 2823805 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0020 9933 hgsc.bcm.edu;ucsc.edu 37 9 2807851 2807851 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0040 9674 hgsc.bcm.edu 37 1 175129955 175129955 + Missense_Mutation SNP G G C rs3208835 bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0090 0 broad.mit.edu 37 1 19545706 19545706 + 3'UTR SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0100 9703 broad.mit.edu 37 17 26942001 26942001 + 3'UTR SNP C T T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0100 9703 broad.mit.edu 37 17 26966765 26966765 + Intron SNP A C C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0100 9703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26961748 26961748 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0100 9703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26965110 26965110 + Silent SNP A A G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0100 9703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26969021 26969021 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0100 9703 hgsc.bcm.edu;ucsc.edu 37 17 26961036 26961036 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0100 9703 hgsc.bcm.edu;ucsc.edu 37 17 26966630 26966630 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0146 23514 broad.mit.edu 37 8 48586205 48586205 + Intron DEL T - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0146 23514 broad.mit.edu 37 8 48586205 48586205 + Intron DEL T - - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0146 23514 broad.mit.edu 37 8 48586205 48586205 + Intron DEL T - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0146 23514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48353095 48353095 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0146 23514 broad.mit.edu;ucsc.edu 37 8 48309113 48309113 + Silent SNP T C C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0174 0 broad.mit.edu;hgsc.bcm.edu 37 16 71951006 71951006 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0174 0 broad.mit.edu;hgsc.bcm.edu 37 16 71956438 71956438 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0174 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71961539 71961539 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0174 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71961673 71961673 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0174 0 hgsc.bcm.edu 37 16 71956529 71956529 + Silent SNP C C T rs28701631 bycluster;byfrequency;by1000genomes TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0182 0 broad.mit.edu 37 16 85696485 85696485 + Intron SNP G T T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0182 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 85696693 85696693 + Silent SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0182 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 85701801 85701801 + Silent SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0195 9772 broad.mit.edu 37 17 73495648 73495649 + 3'UTR INS - G G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0195 9772 broad.mit.edu;hgsc.bcm.edu 37 17 73485346 73485346 + Splice_Site SNP G G A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0195 9772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73488654 73488654 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0196 9897 broad.mit.edu 37 8 126036702 126036702 + 3'UTR SNP C T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0196 9897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 126075842 126075842 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0196 9897 hgsc.bcm.edu 37 8 126036907 126036907 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0226 9711 broad.mit.edu 37 3 197401752 197401752 + 3'UTR DEL A - - novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0226 9711 broad.mit.edu 37 3 197403751 197403751 + Intron SNP C T T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0226 9711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197410178 197410178 + Silent SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0226 9711 hgsc.bcm.edu;ucsc.edu 37 3 197427934 197427934 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0232 9778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 6843902 6843902 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0232 9778 hgsc.bcm.edu;ucsc.edu 37 4 6862718 6862718 + Silent SNP C C T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0240 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42796273 42796273 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0240 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42832809 42832809 + Silent SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0240 0 hgsc.bcm.edu;ucsc.edu 37 6 42832830 42832830 + Silent SNP G G T rs140608307 byfrequency;alternate_allele TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0247 9766 broad.mit.edu;hgsc.bcm.edu 37 14 70170292 70170292 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0284 0 broad.mit.edu 37 14 105361169 105361169 + Silent SNP A C C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0284 0 hgsc.bcm.edu 37 14 105352885 105352890 + In_Frame_Del DEL GCAGGA GCAGGA - rs150426191 bycluster;by1000genomes TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 GCAGGA GCAGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0284 0 hgsc.bcm.edu;ucsc.edu 37 14 105356097 105356097 + Splice_Site SNP T T G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0317 9870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75136411 75136411 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0317 9870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75136696 75136696 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0319 9856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24547467 24547467 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0319 9856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24569057 24569057 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0319 9856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24596226 24596226 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0319 9856 hgsc.bcm.edu 37 6 24596479 24596479 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0319 9856 hgsc.bcm.edu 37 6 24596606 24596606 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0319 9856 hgsc.bcm.edu;ucsc.edu 37 6 24547461 24547461 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0319 9856 hgsc.bcm.edu;ucsc.edu 37 6 24551659 24551659 + Intron SNP T T A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0319L 79932 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35909816 35909816 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0319L 79932 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35917273 35917273 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0355 9710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34791500 34791500 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0355 9710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34832722 34832722 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0355 9710 hgsc.bcm.edu 37 19 34819026 34819026 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0355 9710 hgsc.bcm.edu;ucsc.edu 37 19 34832888 34832888 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0368 23392 broad.mit.edu 37 9 114145539 114145539 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0368 23392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114132845 114132845 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0368 23392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114134741 114134741 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0368 23392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114159361 114159361 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0368 23392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114184459 114184459 + Silent SNP A A T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0368 23392 hgsc.bcm.edu;ucsc.edu 37 9 114133030 114133030 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0368 23392 hgsc.bcm.edu;ucsc.edu 37 9 114182377 114182377 + Silent SNP C C G novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0368 23392 hgsc.bcm.edu;ucsc.edu 37 9 114199285 114199285 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0406 0 broad.mit.edu 37 20 36611752 36611752 + 3'UTR SNP A G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0408 9729 hgsc.bcm.edu;ucsc.edu 37 6 127767753 127767753 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0415 0 broad.mit.edu;ucsc.edu 37 7 4824670 4824670 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0415 0 broad.mit.edu;ucsc.edu 37 7 4830219 4830219 + Silent SNP C T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0415 0 broad.mit.edu;ucsc.edu 37 7 4830337 4830337 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0427 0 broad.mit.edu 37 18 46284644 46284644 + Silent SNP A C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0430 9665 broad.mit.edu 37 16 15690453 15690453 + 3'UTR SNP T G G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0430 9665 broad.mit.edu 37 16 15728972 15728972 + Intron SNP C A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0430 9665 broad.mit.edu;hgsc.bcm.edu 37 16 15728825 15728825 + Intron SNP G G C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0430 9665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15706525 15706525 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0430 9665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15711240 15711240 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0430 9665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15719413 15719413 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0430 9665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15724209 15724210 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0430 9665 hgsc.bcm.edu;ucsc.edu 37 16 15690639 15690639 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0467 0 broad.mit.edu 37 1 43880873 43880873 + Frame_Shift_Del DEL C - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0467 0 broad.mit.edu 37 1 43918042 43918042 + 3'UTR SNP T G G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0467 0 broad.mit.edu;hgsc.bcm.edu 37 1 43914130 43914130 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KIAA0467 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43905719 43905719 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KIAA0467 0 broad.mit.edu;ucsc.edu 37 1 43897031 43897031 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0467 0 hgsc.bcm.edu 37 1 43907706 43907706 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0494 0 hgsc.bcm.edu;ucsc.edu 37 1 47144229 47144229 + Silent SNP A A G novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0513 9764 broad.mit.edu 37 16 85100597 85100597 + 5'UTR SNP C G G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0513 9764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 85120766 85120766 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0528 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22676365 22676365 + Missense_Mutation SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0528 0 hgsc.bcm.edu;ucsc.edu 37 12 22606900 22606900 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0556 23247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27689189 27689189 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0556 23247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27715251 27715251 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0556 23247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27732992 27732992 + Silent SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 broad.mit.edu 37 13 42293563 42293563 + Intron SNP A C C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42263606 42263606 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42361642 42361642 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42440166 42440166 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42461433 42461433 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 hgsc.bcm.edu 37 13 42273315 42273324 + Frame_Shift_Del DEL GTCCACAAAG GTCCACAAAG - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 GTCCACAAAG GTCCACAAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 hgsc.bcm.edu 37 13 42460952 42460952 + Silent SNP C C T rs138269345 by1000genomes;alternate_allele TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0564 0 hgsc.bcm.edu;ucsc.edu 37 13 42335354 42335354 + Intron SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0564 0 hgsc.bcm.edu;ucsc.edu 37 13 42461384 42461384 + Silent SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0564 0 hgsc.bcm.edu;ucsc.edu 37 13 42461418 42461428 + Frame_Shift_Del DEL GGCAAGCCCAA GGCAAGCCCAA - novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 GGCAAGCCCAA GGCAAGCCCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58932590 58932590 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58937442 58937442 + Splice_Site SNP G G T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58949396 58949396 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58954685 58954685 + Missense_Mutation SNP T T G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0586 9786 hgsc.bcm.edu 37 14 58954742 58954742 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0649 0 broad.mit.edu;hgsc.bcm.edu 37 9 138379621 138379621 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0664 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2596082 2596082 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0664 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2606746 2606746 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0664 0 hgsc.bcm.edu 37 17 2597324 2597324 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0748 0 broad.mit.edu 37 12 55357546 55357546 + Missense_Mutation SNP T G G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0748 0 hgsc.bcm.edu;ucsc.edu 37 12 55356811 55356811 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0748 0 hgsc.bcm.edu;ucsc.edu 37 12 55356980 55356980 + Silent SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0754 643314 broad.mit.edu 37 1 39879328 39879328 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0754 643314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39877427 39877427 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0754 643314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39877862 39877862 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0754 643314 hgsc.bcm.edu 37 1 39879397 39879435 + In_Frame_Del DEL GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0754 643314 hgsc.bcm.edu 37 1 39879412 39879412 + Missense_Mutation SNP G G C rs55976345 byfrequency TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0754 643314 hgsc.bcm.edu;ucsc.edu 37 1 39876896 39876896 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0754 643314 hgsc.bcm.edu;ucsc.edu 37 1 39877885 39877885 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0776 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 96997453 96997453 + Silent SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0802 0 broad.mit.edu 37 18 8786001 8786001 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0802 0 broad.mit.edu 37 18 8786109 8786109 + Intron DEL C - - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0802 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 8793068 8793068 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0802 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 8825236 8825236 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0802 0 hgsc.bcm.edu 37 18 8819154 8819154 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0895 23366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 36396886 36396886 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0895L 653319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67214015 67214015 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0907 22889 broad.mit.edu 37 1 155887399 155887399 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0907 22889 broad.mit.edu;hgsc.bcm.edu 37 1 155895374 155895374 + Intron SNP C C G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0907 22889 hgsc.bcm.edu 37 1 155887391 155887391 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0913 0 broad.mit.edu 37 10 75551975 75551975 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA0913 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75545700 75545700 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0913 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75553698 75553698 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0913 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75556685 75556685 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0913 0 hgsc.bcm.edu;ucsc.edu 37 10 75557166 75557168 + In_Frame_Del DEL AAC AAC - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0922 23240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 154504367 154504367 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0922 23240 hgsc.bcm.edu;ucsc.edu 37 4 154506662 154506662 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA0947 23379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 5462477 5462477 + Silent SNP G G T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0947 23379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 5462929 5462929 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA0947 23379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 5464188 5464188 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1009 22832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 84894950 84894950 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1009 22832 hgsc.bcm.edu 37 6 84896316 84896316 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1012 0 broad.mit.edu 37 18 29454189 29454189 + Intron DEL T - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1012 0 broad.mit.edu 37 18 29454189 29454189 + Intron DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1012 0 broad.mit.edu;ucsc.edu 37 18 29435680 29435680 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1012 0 hgsc.bcm.edu 37 18 29437670 29437670 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1012 0 hgsc.bcm.edu 37 18 29477770 29477770 + Silent SNP G G A rs17855000 bycluster;byfrequency;by1000genomes TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1012 0 hgsc.bcm.edu;ucsc.edu 37 18 29488925 29488925 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1024 23251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79748707 79748707 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1024 23251 hgsc.bcm.edu;ucsc.edu 37 15 79749416 79749416 + Silent SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1033 23325 broad.mit.edu;hgsc.bcm.edu 37 12 105537004 105537004 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1033 23325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 105536914 105536914 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1033 23325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 105538583 105538583 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1045 23349 broad.mit.edu 37 9 34971509 34971509 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1107 23285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 92643949 92643949 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1109 84162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123150305 123150305 + Silent SNP T T C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1109 84162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123150307 123150307 + Nonsense_Mutation SNP C C A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1109 84162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123274224 123274224 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1109 84162 hgsc.bcm.edu;ucsc.edu 37 4 123265686 123265686 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1147 57189 broad.mit.edu 37 7 141357344 141357344 + 3'UTR SNP C G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1147 57189 broad.mit.edu 37 7 141364002 141364002 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1147 57189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 141365016 141365016 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1161 57462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34371724 34371724 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1199 57214 broad.mit.edu 37 15 81166242 81166242 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1199 57214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81172060 81172060 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1199 57214 hgsc.bcm.edu;ucsc.edu 37 15 81173292 81173292 + Silent SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1199 57214 hgsc.bcm.edu;ucsc.edu 37 15 81224218 81224218 + Silent SNP A A T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1210 57481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118217056 118217056 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1210 57481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118219357 118219357 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1210 57481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118222879 118222879 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1210 57481 hgsc.bcm.edu 37 X 118284272 118284272 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1211 57482 hgsc.bcm.edu 37 4 57182389 57182389 + Silent SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1217 56243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 24498121 24498121 + 5'UTR SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1217 56243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 24669919 24669919 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1217 56243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 24834980 24834980 + Silent SNP C C A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1217 56243 hgsc.bcm.edu 37 10 24832825 24832825 + Silent SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1217 56243 hgsc.bcm.edu 37 10 24832825 24832825 + Silent SNP G G A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1217 56243 hgsc.bcm.edu;ucsc.edu 37 10 24784134 24784134 + Intron SNP G G A novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1239 57495 broad.mit.edu 37 4 37448889 37448889 + 3'UTR DEL A - - novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1244 57221 broad.mit.edu 37 6 138628466 138628466 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1244 57221 broad.mit.edu 37 6 138655319 138655319 + Missense_Mutation SNP G A A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1244 57221 hgsc.bcm.edu 37 6 138584327 138584327 + Silent SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1244 57221 hgsc.bcm.edu 37 6 138657590 138657591 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1244 57221 hgsc.bcm.edu;ucsc.edu 37 6 138601236 138601236 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1267 0 broad.mit.edu 37 17 44107957 44107957 + 3'UTR DEL A - - rs35400776 unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1267 0 broad.mit.edu 37 17 44270154 44270156 + 5'UTR DEL AGG - - rs143625699 by1000genomes TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 AGG AGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44116407 44116407 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44127972 44127981 + Frame_Shift_Del DEL GTGAATTTCG GTGAATTTCG - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 GTGAATTTCG GTGAATTTCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44248335 44248335 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44248412 44248412 + Silent SNP T T C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1267 0 hgsc.bcm.edu;ucsc.edu 37 17 44144984 44144984 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1279 26128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70748679 70748679 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1310 0 broad.mit.edu 37 2 97266544 97266544 + Intron DEL A - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1310 0 broad.mit.edu;hgsc.bcm.edu 37 2 97267383 97267383 + Silent SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1310 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97285435 97285435 + Silent SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1310 0 hgsc.bcm.edu 37 2 97278028 97278028 + Silent SNP C C T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1310 0 hgsc.bcm.edu;ucsc.edu 37 2 97270575 97270575 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1310 0 hgsc.bcm.edu;ucsc.edu 37 2 97278654 97278654 + Silent SNP A A G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1324L 222223 hgsc.bcm.edu;ucsc.edu 37 7 86548618 86548618 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1370 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52892355 52892355 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1370 0 hgsc.bcm.edu 37 15 52970176 52970176 + Intron SNP C C A novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1370 0 hgsc.bcm.edu;ucsc.edu 37 15 52897437 52897437 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1377 57562 broad.mit.edu 37 11 101868446 101868446 + 3'UTR SNP A C C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1377 57562 broad.mit.edu 37 11 101868446 101868446 + 3'UTR SNP A C C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1377 57562 hgsc.bcm.edu 37 11 101833645 101833645 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1383 54627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 232942950 232942950 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1383 54627 hgsc.bcm.edu;ucsc.edu 37 1 232943660 232943660 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1407 57577 broad.mit.edu 37 3 113723397 113723397 + Intron SNP G T T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1409 0 broad.mit.edu;hgsc.bcm.edu 37 14 94129061 94129061 + Splice_Site SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1409 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94088412 94088412 + Silent SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1409 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94088745 94088745 + Silent SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1409 0 hgsc.bcm.edu 37 14 93994955 93994955 + Silent SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95530150 95530150 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95531232 95531232 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95538745 95538745 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1429 25962 hgsc.bcm.edu 37 8 95518778 95518778 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1429 25962 hgsc.bcm.edu;ucsc.edu 37 8 95513612 95513612 + Intron SNP A A C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1429 25962 hgsc.bcm.edu;ucsc.edu 37 8 95539238 95539238 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1429 25962 hgsc.bcm.edu;ucsc.edu 37 8 95541534 95541534 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1430 57587 hgsc.bcm.edu;ucsc.edu 37 4 186085307 186085307 + Silent SNP C C A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1430 57587 hgsc.bcm.edu;ucsc.edu 37 4 186096970 186096970 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1432 57589 broad.mit.edu 37 9 5765320 5765320 + Intron SNP C A A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1432 57589 broad.mit.edu 37 9 5765320 5765320 + Intron SNP C A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1432 57589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5763502 5763502 + Silent SNP G G A rs149258225 unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1432 57589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5763718 5763718 + Silent SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1462 57608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 30315665 30315665 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1462 57608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 30316404 30316404 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1462 57608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 30316647 30316647 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1467 57613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13233561 13233561 + Missense_Mutation SNP C C G rs192853755 by1000genomes TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1467 57613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13233566 13233566 + 3'UTR SNP C C G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1467 57613 hgsc.bcm.edu;ucsc.edu 37 12 13208556 13208556 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1467 57613 hgsc.bcm.edu;ucsc.edu 37 12 13224254 13224254 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1468 57614 broad.mit.edu;hgsc.bcm.edu 37 18 59854885 59854885 + Silent SNP T T G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1468 57614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 59949659 59949659 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1486 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 226378271 226378271 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1486 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 226447525 226447525 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1486 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 226447526 226447526 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1486 0 hgsc.bcm.edu 37 2 226273688 226273688 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1522 57648 broad.mit.edu 37 1 33236584 33236584 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1522 57648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33237800 33237800 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1524 57650 broad.mit.edu;ucsc.edu 37 3 108281998 108281998 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1529 0 hgsc.bcm.edu 37 9 100079448 100079448 + Silent SNP C C T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1529 0 hgsc.bcm.edu;ucsc.edu 37 9 100053695 100053695 + Silent SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1530 0 broad.mit.edu 37 4 1343562 1343562 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1530 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1348531 1348531 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1539 0 broad.mit.edu 37 9 35108319 35108319 + 5'UTR DEL G - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1543 0 broad.mit.edu;hgsc.bcm.edu 37 19 7677733 7677733 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1543 0 hgsc.bcm.edu 37 19 7675369 7675369 + Silent SNP C C T rs62113420 bycluster;by1000genomes TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1543 0 hgsc.bcm.edu 37 19 7675369 7675369 + Silent SNP C C T rs62113420 bycluster;by1000genomes TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1543 0 hgsc.bcm.edu 37 19 7675454 7675455 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1549 57670 hgsc.bcm.edu 37 7 138546115 138546115 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1549 57670 hgsc.bcm.edu;ucsc.edu 37 7 138556052 138556052 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1549 57670 hgsc.bcm.edu;ucsc.edu 37 7 138595936 138595936 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1549 57670 hgsc.bcm.edu;ucsc.edu 37 7 138603070 138603070 + Silent SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1586 57691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56917523 56917523 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1598 57698 broad.mit.edu 37 10 118645923 118645923 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1598 57698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118719667 118719667 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1609 57707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84516270 84516270 + Silent SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1609 57707 hgsc.bcm.edu 37 16 84523001 84523001 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1609 57707 hgsc.bcm.edu 37 16 84529460 84529460 + Silent SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1614 57710 broad.mit.edu 37 1 180913303 180913303 + Intron DEL A - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1614 57710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180904820 180904820 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1614 57710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180910371 180910371 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1614 57710 hgsc.bcm.edu 37 1 180910302 180910302 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1632 0 broad.mit.edu 37 18 43432246 43432247 + 3'UTR DEL AC - - rs112643058 unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1632 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43492338 43492338 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1632 0 hgsc.bcm.edu;ucsc.edu 37 18 43440143 43440143 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1632 0 hgsc.bcm.edu;ucsc.edu 37 18 43523194 43523194 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID KIAA1644 85352 hgsc.bcm.edu 37 22 44681611 44681611 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1671 85379 hgsc.bcm.edu;ucsc.edu 37 22 25586728 25586728 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1683 80726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18376414 18376414 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1683 80726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18377009 18377009 + Silent SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1683 80726 hgsc.bcm.edu 37 19 18377981 18377981 + Silent SNP C C G rs61740692 bycluster;byfrequency;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1704 55425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 45578485 45578485 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1704 55425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 45589098 45589098 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1712 0 broad.mit.edu 37 4 175238739 175238739 + 3'UTR DEL T - - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1731 85459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93432025 93432025 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1731 85459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93436013 93436013 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1731 85459 hgsc.bcm.edu 37 11 93400881 93400881 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1737 85457 hgsc.bcm.edu 37 14 77580149 77580149 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1751 85452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1888064 1888064 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1751 85452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1919956 1919956 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1751 85452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1920343 1920343 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1751 85452 broad.mit.edu;ucsc.edu 37 1 1919956 1919956 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1751 85452 hgsc.bcm.edu 37 1 1886346 1886346 + 3'UTR SNP G G A novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1751 85452 hgsc.bcm.edu 37 1 1886346 1886346 + 3'UTR SNP G G A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1751 85452 hgsc.bcm.edu 37 1 1897857 1897857 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1751 85452 hgsc.bcm.edu 37 1 1897857 1897857 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1755 85449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36869596 36869596 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1755 85449 hgsc.bcm.edu;ucsc.edu 37 20 36869005 36869005 + Nonsense_Mutation SNP G G A rs41282820 bycluster;byfrequency;by1000genomes TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1797 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 20874780 20874780 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1797 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 20990252 20990253 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1797 0 hgsc.bcm.edu;ucsc.edu 37 9 20758088 20758088 + Splice_Site SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1826 0 hgsc.bcm.edu 37 11 105881275 105881275 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1841 84542 broad.mit.edu 37 2 61336340 61336340 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1875 340390 broad.mit.edu 37 8 145169270 145169270 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1919 91749 hgsc.bcm.edu;ucsc.edu 37 6 111587971 111587971 + Silent SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1967 57805 broad.mit.edu 37 8 22477079 22477085 + Intron DEL GCAGTCC - - rs11277601 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GCAGTCC GCAGTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA1967 57805 hgsc.bcm.edu 37 8 22463673 22463673 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA1984 84960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139697161 139697161 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA1984 84960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139701099 139701099 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2013 90231 broad.mit.edu 37 1 11980221 11980246 + 3'UTR DEL GGTGTATCCACACTCACTTCTGCGTC - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 GGTGTATCCACACTCACTTCTGCGTC GGTGTATCCACACTCACTTCTGCGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA2013 90231 broad.mit.edu 37 1 11982556 11982556 + Intron SNP G A A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA2013 90231 hgsc.bcm.edu 37 1 11985493 11985494 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2018 205717 broad.mit.edu 37 3 113371901 113371901 + 3'UTR DEL A - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA2018 205717 broad.mit.edu 37 3 113371901 113371901 + 3'UTR DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA2018 205717 broad.mit.edu 37 3 113371901 113371901 + 3'UTR DEL A - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA2018 205717 broad.mit.edu;hgsc.bcm.edu 37 3 113379013 113379013 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2018 205717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113374665 113374665 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2018 205717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113377055 113377055 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2018 205717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113379615 113379615 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2018 205717 hgsc.bcm.edu 37 3 113376125 113376125 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2018 205717 hgsc.bcm.edu 37 3 113379781 113379782 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA2018 205717 hgsc.bcm.edu;ucsc.edu 37 3 113377605 113377605 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA2022 340533 broad.mit.edu;hgsc.bcm.edu 37 X 73962314 73962314 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KIAA2022 340533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 73960856 73960856 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2022 340533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 73962035 73962035 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIAA2022 340533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 73963362 73963362 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KIAA2022 340533 broad.mit.edu;ucsc.edu 37 X 73961521 73961521 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIAA2022 340533 hgsc.bcm.edu 37 X 73964285 73964285 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA2022 340533 hgsc.bcm.edu;ucsc.edu 37 X 73962408 73962408 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID KIAA2026 158358 hgsc.bcm.edu 37 9 5968932 5968932 + Silent SNP A A G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIAA2026 158358 hgsc.bcm.edu;ucsc.edu 37 9 5968196 5968196 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIDINS220 57498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 8871251 8871251 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIDINS220 57498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 8890360 8890360 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIDINS220 57498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 8919170 8919170 + Silent SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIDINS220 57498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 8953448 8953448 + Silent SNP A A C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIDINS220 57498 hgsc.bcm.edu;ucsc.edu 37 2 8891618 8891618 + Silent SNP G G C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF11 3832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94397051 94397051 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF12 113220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116859632 116859632 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13A 63971 broad.mit.edu;hgsc.bcm.edu 37 6 17850652 17850652 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13A 63971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17783914 17783914 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13A 63971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17794626 17794626 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13A 63971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17828563 17828563 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13A 63971 broad.mit.edu;ucsc.edu 37 6 17898399 17898399 + Silent SNP C T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF13A 63971 hgsc.bcm.edu;ucsc.edu 37 6 17764666 17764666 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13B 23303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 29018273 29018273 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13B 23303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 29018370 29018370 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF13B 23303 hgsc.bcm.edu;ucsc.edu 37 8 28976473 28976473 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200555334 200555334 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200562851 200562851 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200586908 200586908 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200587085 200587085 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200587322 200587322 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200587653 200587653 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF15 56992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44816791 44816791 + Silent SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF15 56992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44847461 44847461 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF15 56992 hgsc.bcm.edu 37 3 44846572 44846572 + Missense_Mutation SNP A A T rs113556197 unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF15 56992 hgsc.bcm.edu;ucsc.edu 37 3 44816879 44816879 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF16B 55614 broad.mit.edu;hgsc.bcm.edu 37 20 16316573 16316573 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF16B 55614 broad.mit.edu;hgsc.bcm.edu 37 20 16316574 16316574 + Silent SNP T T G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF16B 55614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 16359478 16359478 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KIF16B 55614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 16509021 16509021 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KIF16B 55614 hgsc.bcm.edu 37 20 16359582 16359582 + Missense_Mutation SNP T T C rs34336583 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF16B 55614 hgsc.bcm.edu;ucsc.edu 37 20 16478322 16478322 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF17 57576 broad.mit.edu 37 1 20990992 20990992 + 3'UTR SNP T G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF17 57576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20998503 20998503 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF17 57576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20998504 20998504 + Silent SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF17 57576 hgsc.bcm.edu 37 1 21042033 21042033 + Missense_Mutation SNP T T C rs35835983 bycluster;byfrequency;by1000genomes TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF18A 81930 broad.mit.edu;ucsc.edu 37 11 28045366 28045366 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF18A 81930 hgsc.bcm.edu;ucsc.edu 37 11 28058129 28058129 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF18B 146909 hgsc.bcm.edu 37 17 43011388 43011388 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF19 124602 broad.mit.edu 37 17 72342609 72342609 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF19 124602 broad.mit.edu 37 17 72343936 72343936 + Silent SNP C T T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF19 124602 broad.mit.edu 37 17 72347133 72347133 + Intron SNP G T T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF19 124602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72340956 72340956 + Silent SNP C C A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF19 124602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72345372 72345372 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF19 124602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72350319 72350319 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1A 547 broad.mit.edu 37 2 241660401 241660401 + Missense_Mutation SNP C A A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF1A 547 broad.mit.edu 37 2 241665266 241665266 + Intron DEL C - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF1A 547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241686667 241686667 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1A 547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241724433 241724433 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1A 547 broad.mit.edu;ucsc.edu 37 2 241662861 241662861 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF1A 547 hgsc.bcm.edu;ucsc.edu 37 2 241722488 241722488 + Silent SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF1A 547 hgsc.bcm.edu;ucsc.edu 37 2 241725926 241725926 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10318553 10318553 + Silent SNP C C T rs141998703 bycluster;byfrequency;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10363881 10363881 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10364568 10364568 + Silent SNP T T C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10394639 10394639 + Missense_Mutation SNP G G A rs145596547 unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10421772 10421772 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10425659 10425659 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10434522 10434522 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1B 23095 broad.mit.edu;ucsc.edu 37 1 10412718 10412718 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF1B 23095 hgsc.bcm.edu 37 1 10318706 10318706 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF1B 23095 hgsc.bcm.edu;ucsc.edu 37 1 10397234 10397234 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF1C 10749 broad.mit.edu 37 17 4924146 4924146 + Silent SNP C T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF1C 10749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4923903 4923903 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1C 10749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4926964 4926964 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF1C 10749 hgsc.bcm.edu 37 17 4926877 4926879 + In_Frame_Del DEL TCG TCG - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 TCG TCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20A 10112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137519224 137519224 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20A 10112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137520633 137520633 + Silent SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20A 10112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137522079 137522079 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20A 10112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137522869 137522869 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20B 9585 broad.mit.edu;hgsc.bcm.edu 37 10 91476196 91476196 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20B 9585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91469205 91469205 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20B 9585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91497461 91497461 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20B 9585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91528517 91528517 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF20B 9585 hgsc.bcm.edu 37 10 91469727 91469727 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF20B 9585 hgsc.bcm.edu 37 10 91497907 91497907 + Silent SNP G G A rs76057302 unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF20B 9585 hgsc.bcm.edu 37 10 91532538 91532538 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF20B 9585 hgsc.bcm.edu;ucsc.edu 37 10 91497621 91497621 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21A 55605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 39730918 39730918 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21A 55605 hgsc.bcm.edu 37 12 39695437 39695437 + Silent SNP C C A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF21A 55605 hgsc.bcm.edu 37 12 39726836 39726836 + Nonsense_Mutation SNP G G C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21B 23046 broad.mit.edu 37 1 200994851 200994851 + 5'Flank DEL G - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200943295 200943295 + Silent SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200954092 200954092 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200959172 200959172 + Splice_Site SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200960791 200960791 + Silent SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF21B 23046 hgsc.bcm.edu;ucsc.edu 37 1 200956041 200956046 + In_Frame_Del DEL CTAGGG CTAGGG - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 CTAGGG CTAGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF22 3835 broad.mit.edu;hgsc.bcm.edu 37 16 29810383 29810383 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF23 9493 hgsc.bcm.edu;ucsc.edu 37 15 69714040 69714040 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF24 347240 hgsc.bcm.edu;ucsc.edu 37 9 34271874 34271874 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF25 3834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168440859 168440859 + Silent SNP G G A rs147571413 byfrequency;alternate_allele TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF25 3834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168443302 168443302 + Silent SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF26A 26153 broad.mit.edu 37 14 104643367 104643367 + Silent SNP G A A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF26B 55083 broad.mit.edu 37 1 245848753 245848753 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF26B 55083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 245583033 245583033 + Silent SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF26B 55083 hgsc.bcm.edu 37 1 245850299 245850299 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF27 55582 broad.mit.edu 37 9 86451766 86451767 + 3'UTR INS - T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF27 55582 broad.mit.edu 37 9 86451774 86451776 + 3'UTR DEL AGC - - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 AGC AGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF27 55582 broad.mit.edu;hgsc.bcm.edu 37 9 86474157 86474157 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF27 55582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86518027 86518027 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF27 55582 hgsc.bcm.edu;ucsc.edu 37 9 86502010 86502010 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF2A 3796 broad.mit.edu 37 5 61649100 61649100 + Splice_Site SNP A G G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF2A 3796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 61643911 61643911 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF2A 3796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 61677018 61677018 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF2A 3796 hgsc.bcm.edu 37 5 61659522 61659522 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF2B 84643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 51900736 51900736 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF2B 84643 hgsc.bcm.edu 37 17 51900836 51900836 + Missense_Mutation SNP C C T rs59657238 bycluster;byfrequency;by1000genomes TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF2B 84643 hgsc.bcm.edu;ucsc.edu 37 17 51902361 51902361 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF2C 11004 hgsc.bcm.edu 37 1 45205617 45205617 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF3A 11127 hgsc.bcm.edu;ucsc.edu 37 5 132070046 132070062 + Frame_Shift_Del DEL CCCCTCATCTCATCCAC CCCCTCATCTCATCCAC - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 CCCCTCATCTCATCCAC CCCCTCATCTCATCCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3B 9371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30897808 30897808 + Silent SNP G G C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3B 9371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30898421 30898421 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3B 9371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30918079 30918079 + Missense_Mutation SNP G G A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3B 9371 hgsc.bcm.edu;ucsc.edu 37 20 30898460 30898460 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3B 9371 hgsc.bcm.edu;ucsc.edu 37 20 30915461 30915461 + Silent SNP T T C rs1129012 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3B 9371 hgsc.bcm.edu;ucsc.edu 37 20 30919118 30919119 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF3C 3797 hgsc.bcm.edu 37 2 26203995 26203996 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4A 24137 broad.mit.edu 37 X 69510208 69510208 + Intron SNP G A A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF4A 24137 broad.mit.edu;hgsc.bcm.edu 37 X 69595153 69595153 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4A 24137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69622483 69622483 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4A 24137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69622533 69622533 + Silent SNP T T C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4A 24137 hgsc.bcm.edu 37 X 69561758 69561758 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF4A 24137 hgsc.bcm.edu 37 X 69637742 69637742 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF4B 285643 broad.mit.edu;hgsc.bcm.edu 37 5 154394373 154394373 + Silent SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4B 285643 broad.mit.edu;hgsc.bcm.edu 37 5 154396598 154396598 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4B 285643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154394675 154394675 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4B 285643 hgsc.bcm.edu 37 5 154393562 154393562 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF4B 285643 hgsc.bcm.edu;ucsc.edu 37 5 154395061 154395061 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF5B 3799 broad.mit.edu 37 10 32298588 32298588 + 3'UTR DEL A - - rs71651785 unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF5B 3799 broad.mit.edu 37 10 32300020 32300020 + 3'UTR DEL A - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF5B 3799 hgsc.bcm.edu;ucsc.edu 37 10 32304512 32304512 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIF5C 3800 broad.mit.edu 37 2 149853959 149853959 + Intron SNP A C C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIF5C 3800 broad.mit.edu;hgsc.bcm.edu 37 2 149793902 149793902 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF5C 3800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 149851037 149851037 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIF6 221458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39304293 39304293 + 3'UTR SNP A A G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIFAP3 22920 hgsc.bcm.edu;ucsc.edu 37 1 170003574 170003574 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIFC1 3833 broad.mit.edu 37 6 33359693 33359693 + 5'UTR SNP A G G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIFC1 3833 broad.mit.edu 37 6 33367780 33367780 + Intron DEL T - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIFC1 3833 broad.mit.edu 37 6 33367780 33367780 + Intron DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIFC1 3833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33374604 33374604 + Silent SNP G G T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIFC2 90990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145697356 145697356 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIN 22944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7829795 7829795 + Silent SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIR2DS4 3809 broad.mit.edu;hgsc.bcm.edu 37 19 55351066 55351066 + Missense_Mutation SNP C C T rs1130503 unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIR3DL1 3811 hgsc.bcm.edu;ucsc.edu 37 19 55341674 55341674 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIR3DL3 100133046 broad.mit.edu 37 19 55239272 55239272 + Missense_Mutation SNP C T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIR3DP1 548594 broad.mit.edu 37 19 55297923 55297923 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIR3DX1 90011 hgsc.bcm.edu;ucsc.edu 37 19 55049158 55049158 + Intron SNP C C A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIRREL3 84623 broad.mit.edu;hgsc.bcm.edu 37 11 126294453 126294453 + 3'UTR SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIRREL 55243 broad.mit.edu 37 1 158059420 158059420 + Splice_Site SNP T G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIRREL 55243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158057581 158057581 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KIRREL 55243 hgsc.bcm.edu;ucsc.edu 37 1 158054231 158054231 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KISS1R 84634 broad.mit.edu 37 19 918608 918608 + Silent SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KIT 3815 hgsc.bcm.edu 37 4 55524186 55524186 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIT 3815 hgsc.bcm.edu 37 4 55593631 55593631 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KIT 3815 hgsc.bcm.edu 37 4 55593646 55593646 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KITLG 4254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88910211 88910211 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KITLG 4254 hgsc.bcm.edu;ucsc.edu 37 12 88939566 88939566 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KL 9365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33634984 33634984 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KL 9365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33635592 33635592 + Silent SNP T T C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLB 152831 broad.mit.edu;hgsc.bcm.edu 37 4 39436298 39436298 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLC1 3831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 104123884 104123884 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLC1 3831 hgsc.bcm.edu;ucsc.edu 37 14 104129226 104129226 + Silent SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLC3 147700 broad.mit.edu 37 19 45850598 45850599 + Intron INS - A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLC3 147700 broad.mit.edu 37 19 45850598 45850599 + Intron INS - A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLC3 147700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45854226 45854226 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLC4 89953 hgsc.bcm.edu;ucsc.edu 37 6 43042370 43042370 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLF10 7071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 103663602 103663602 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF10 7071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 103664082 103664082 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF1 10661 broad.mit.edu 37 19 12997970 12997970 + 5'UTR SNP A C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF11 8462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10186515 10186515 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF12 11278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 74420129 74420129 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF15 28999 hgsc.bcm.edu 37 3 126070874 126070874 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLF17 128209 broad.mit.edu 37 1 44516768 44516768 + 5'UTR DEL C - - rs139698697 bycluster;by1000genomes TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF17 128209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44596402 44596402 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF3 51274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38690220 38690220 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF3 51274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38698861 38698861 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF3 51274 hgsc.bcm.edu;ucsc.edu 37 4 38698823 38698823 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF5 688 broad.mit.edu 37 13 73650108 73650109 + 3'UTR INS - A A novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF5 688 hgsc.bcm.edu 37 13 73636044 73636044 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLF7 8609 hgsc.bcm.edu 37 2 207988751 207988751 + Silent SNP G G A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLF8 11279 broad.mit.edu 37 X 56291625 56291625 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF8 11279 broad.mit.edu 37 X 56295626 56295626 + Intron DEL A - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF8 11279 broad.mit.edu 37 X 56310756 56310756 + Silent SNP T G G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF8 11279 broad.mit.edu;hgsc.bcm.edu 37 X 56295819 56295819 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF8 11279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 56292017 56292017 + Silent SNP T T C novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF8 11279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 56310908 56310908 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF9 687 broad.mit.edu 37 9 73001090 73001090 + 3'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF9 687 broad.mit.edu 37 9 73027890 73027890 + Silent SNP T C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLF9 687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73027803 73027803 + Silent SNP A A G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF9 687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73027946 73027946 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF9 687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73028059 73028059 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLF9 687 hgsc.bcm.edu 37 9 73027905 73027905 + Silent SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHDC10 23008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129761893 129761893 + Splice_Site SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHDC1 122773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50206889 50206889 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHDC2 23588 hgsc.bcm.edu;ucsc.edu 37 14 50249623 50249623 + Silent SNP T T G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHDC4 54758 hgsc.bcm.edu;ucsc.edu 37 16 87754285 87754285 + Intron SNP G G A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHDC5 57542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27933951 27933951 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHDC5 57542 hgsc.bcm.edu 37 12 27950786 27950786 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHDC5 57542 hgsc.bcm.edu;ucsc.edu 37 12 27944776 27944776 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHDC7A 127707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 18807868 18807868 + Silent SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHDC7B 113730 broad.mit.edu;hgsc.bcm.edu 37 22 50987493 50987493 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHDC8B 200942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49212294 49212294 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHDC8B 200942 hgsc.bcm.edu 37 3 49210262 49210262 + Silent SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL10 317719 broad.mit.edu 37 17 39994097 39994097 + 5'UTR SNP A T T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL10 317719 broad.mit.edu;hgsc.bcm.edu 37 17 40001990 40001990 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL10 317719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40004451 40004451 + Silent SNP A A C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL12 59349 broad.mit.edu 37 1 202861464 202861466 + 3'UTR DEL CTG - - rs35443455 bycluster TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL12 59349 broad.mit.edu 37 1 202861464 202861466 + 3'UTR DEL CTG - - rs35443455 bycluster TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL12 59349 broad.mit.edu;hgsc.bcm.edu 37 1 202861658 202861658 + 3'UTR SNP T T G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL13 90293 broad.mit.edu 37 X 117032810 117032810 + 3'UTR SNP G T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL13 90293 hgsc.bcm.edu;ucsc.edu 37 X 117032986 117032986 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL1 57626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 70281831 70281831 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL1 57626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 70681442 70681442 + Silent SNP C C A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL15 80311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24006422 24006422 + Silent SNP C C A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL15 80311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24007140 24007140 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL17 339451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 897302 897302 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL17 339451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 900441 900441 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL17 339451 hgsc.bcm.edu;ucsc.edu 37 1 897301 897301 + Silent SNP G G T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL20 27252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173703125 173703125 + Silent SNP A A T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL2 11275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 166239048 166239048 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL21 9903 broad.mit.edu;hgsc.bcm.edu 37 1 6655551 6655551 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL21 9903 hgsc.bcm.edu 37 1 6661906 6661906 + Silent SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL22 84861 hgsc.bcm.edu 37 22 20843449 20843449 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL24 54800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183390233 183390233 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL24 54800 hgsc.bcm.edu;ucsc.edu 37 3 183368567 183368567 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL25 64410 broad.mit.edu 37 15 86312584 86312584 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL25 64410 broad.mit.edu;hgsc.bcm.edu 37 15 86311567 86311567 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL25 64410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86312287 86312287 + Missense_Mutation SNP C C T rs142937016 unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL26 55295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18778755 18778755 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL26 55295 hgsc.bcm.edu 37 19 18778933 18778937 + Frame_Shift_Del DEL GCGCG GCGCG - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 GCGCG GCGCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL31 401265 broad.mit.edu 37 6 53516197 53516198 + 3'UTR INS - AAAAAAA AAAAAAA novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL31 401265 broad.mit.edu 37 6 53516197 53516198 + 3'UTR INS - AAAAAAA AAAAAAA novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL31 401265 broad.mit.edu;hgsc.bcm.edu 37 6 53520057 53520057 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL31 401265 broad.mit.edu;hgsc.bcm.edu 37 6 53520093 53520093 + 5'UTR SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL31 401265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 53516418 53516418 + Missense_Mutation SNP G G T rs12204882 unknown;alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL32 114792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97562309 97562309 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL32 114792 broad.mit.edu;ucsc.edu 37 6 97423877 97423877 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL3 26249 broad.mit.edu;ucsc.edu 37 5 136974757 136974757 + Silent SNP G A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL3 26249 hgsc.bcm.edu;ucsc.edu 37 5 136963990 136963990 + Silent SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL34 257240 broad.mit.edu 37 X 21674384 21674384 + Frame_Shift_Del DEL T - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL34 257240 broad.mit.edu;hgsc.bcm.edu 37 X 21674907 21674907 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL36 79786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84691436 84691436 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL36 79786 hgsc.bcm.edu;ucsc.edu 37 16 84690712 84690712 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL38 340359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 124664647 124664647 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL4 56062 broad.mit.edu 37 X 86924520 86924521 + 3'UTR INS - A A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL4 56062 broad.mit.edu 37 X 86924534 86924534 + 3'UTR SNP G T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL4 56062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 86890606 86890606 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL4 56062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 86890699 86890699 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL4 56062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 86921522 86921522 + Silent SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL5 51088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39083717 39083717 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL5 51088 hgsc.bcm.edu;ucsc.edu 37 4 39116919 39116919 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL6 89857 broad.mit.edu;hgsc.bcm.edu 37 3 183217550 183217550 + Silent SNP G G T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL6 89857 broad.mit.edu;ucsc.edu 37 3 183211912 183211912 + Silent SNP G T T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL7 55975 broad.mit.edu 37 7 23142476 23142477 + 5'Flank DEL AA - - rs35152293 bycluster;by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL7 55975 broad.mit.edu 37 7 23214077 23214077 + 3'UTR SNP C T T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL7 55975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23183605 23183605 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL7 55975 broad.mit.edu;ucsc.edu 37 7 23207478 23207478 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLHL8 57563 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88106697 88106697 + Silent SNP A A G novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLHL8 57563 hgsc.bcm.edu;ucsc.edu 37 4 88099693 88099693 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLHL9 55958 hgsc.bcm.edu;ucsc.edu 37 9 21334022 21334022 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK10 5655 broad.mit.edu 37 19 51516024 51516024 + 3'UTR DEL T - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLK10 5655 broad.mit.edu 37 19 51517901 51517901 + 3'UTR SNP G T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLK10 5655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51518692 51518692 + Missense_Mutation SNP C C T rs142960865 unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK10 5655 hgsc.bcm.edu 37 19 51519365 51519365 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK10 5655 hgsc.bcm.edu 37 19 51519366 51519366 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK11 11012 broad.mit.edu;hgsc.bcm.edu 37 19 51525739 51525739 + 3'UTR SNP T T G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK11 11012 hgsc.bcm.edu;ucsc.edu 37 19 51527639 51527639 + Intron SNP T T G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK12 43849 hgsc.bcm.edu;ucsc.edu 37 19 51533388 51533388 + Intron SNP C C G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK13 26085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51559929 51559929 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK13 26085 hgsc.bcm.edu 37 19 51561827 51561829 + In_Frame_Del DEL CGG CGG - novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK13 26085 hgsc.bcm.edu 37 19 51561875 51561875 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK13 26085 hgsc.bcm.edu;ucsc.edu 37 19 51559915 51559915 + Missense_Mutation SNP C C T rs150383488 unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK14 43847 broad.mit.edu 37 19 51581198 51581198 + 3'UTR DEL C - - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLK14 43847 broad.mit.edu;hgsc.bcm.edu 37 19 51582708 51582708 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK14 43847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51585845 51585845 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK2 3817 broad.mit.edu;hgsc.bcm.edu 37 19 51378153 51378153 + Intron SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK2 3817 hgsc.bcm.edu 37 19 51378100 51378100 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK2 3817 hgsc.bcm.edu 37 19 51378101 51378101 + Silent SNP C A A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK2 3817 hgsc.bcm.edu 37 19 51378101 51378101 + Silent SNP C C A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK3 354 broad.mit.edu 37 19 51361427 51361427 + Missense_Mutation SNP T C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLK3 354 broad.mit.edu 37 19 51362940 51362940 + 3'UTR SNP G A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLK3 354 hgsc.bcm.edu;ucsc.edu 37 19 51363270 51363270 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK4 9622 broad.mit.edu;hgsc.bcm.edu 37 19 51410162 51410162 + 3'UTR SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK4 9622 hgsc.bcm.edu 37 19 51411978 51411978 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK5 25818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51453328 51453328 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK6 5653 broad.mit.edu 37 19 51462529 51462529 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLK6 5653 broad.mit.edu;hgsc.bcm.edu 37 19 51462556 51462556 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK6 5653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51466690 51466690 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLK6 5653 hgsc.bcm.edu;ucsc.edu 37 19 51462555 51462555 + Silent SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KLK8 11202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51503868 51503868 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLKB1 3818 broad.mit.edu 37 4 187172722 187172722 + Missense_Mutation SNP T A A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KLRAQ1 0 broad.mit.edu;hgsc.bcm.edu 37 2 48681713 48681713 + RNA SNP T T C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRAQ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48687267 48687267 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRAQ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48698316 48698316 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRAQ1 0 hgsc.bcm.edu;ucsc.edu 37 2 48692136 48692136 + RNA SNP A A G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRC1 3821 broad.mit.edu;hgsc.bcm.edu 37 12 10599220 10599220 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRC1 3821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10603588 10603588 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRC2 3822 broad.mit.edu;hgsc.bcm.edu 37 12 10584769 10584769 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRC2 3822 broad.mit.edu;hgsc.bcm.edu 37 12 10584769 10584770 + Frame_Shift_Ins INS - - AA novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRC2 3822 broad.mit.edu;hgsc.bcm.edu 37 12 10588502 10588502 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRC2 3822 hgsc.bcm.edu 37 12 10586422 10586422 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KLRG1 10219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9144837 9144837 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KMO 8564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241723981 241723981 + Silent SNP C C G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KNDC1 85442 broad.mit.edu 37 10 135039707 135039707 + 3'UTR DEL T - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KNDC1 85442 broad.mit.edu;hgsc.bcm.edu 37 10 135012532 135012532 + Silent SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KNG1 3827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186459690 186459690 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KNG1 3827 hgsc.bcm.edu;ucsc.edu 37 3 186460113 186460114 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KNTC1 9735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123034395 123034395 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KNTC1 9735 hgsc.bcm.edu;ucsc.edu 37 12 123028814 123028814 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KPNA1 3836 broad.mit.edu;ucsc.edu 37 3 122160886 122160886 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA2 3838 broad.mit.edu;hgsc.bcm.edu 37 17 66042696 66042696 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KPNA4 3840 broad.mit.edu 37 3 160219829 160219829 + 3'UTR SNP C T T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA4 3840 broad.mit.edu 37 3 160219829 160219829 + 3'UTR SNP C T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA4 3840 broad.mit.edu 37 3 160219837 160219837 + 3'UTR SNP C T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA4 3840 broad.mit.edu 37 3 160219839 160219839 + 3'UTR SNP T C C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA4 3840 broad.mit.edu 37 3 160219839 160219839 + 3'UTR SNP T C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA4 3840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 160227602 160227602 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KPNA4 3840 broad.mit.edu;ucsc.edu 37 3 160254590 160254590 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA4 3840 hgsc.bcm.edu;ucsc.edu 37 3 160249299 160249299 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KPNA6 23633 broad.mit.edu 37 1 32636838 32636838 + 3'UTR DEL T - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPNA6 23633 hgsc.bcm.edu;ucsc.edu 37 1 32605410 32605410 + Intron SNP G G T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KPNB1 3837 hgsc.bcm.edu 37 17 45745724 45745724 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KPRP 448834 broad.mit.edu 37 1 152733814 152733814 + 3'UTR SNP G T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KPRP 448834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152732829 152732829 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KPRP 448834 hgsc.bcm.edu;ucsc.edu 37 1 152732937 152732937 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KPTN 11133 hgsc.bcm.edu 37 19 47980067 47980067 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRAS 3845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 25380282 25380282 + Missense_Mutation SNP G G C rs104886029 unknown;alternate_allele TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRBA2 124751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8273274 8273274 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRBA2 124751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8274814 8274814 + Silent SNP T T G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRI1 65095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10668296 10668296 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRIT1 889 broad.mit.edu 37 7 91865513 91865514 + Intron INS - A A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRIT1 889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91842561 91842561 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRIT1 889 broad.mit.edu;ucsc.edu 37 7 91855963 91855963 + Silent SNP T C C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRR1 11103 broad.mit.edu 37 12 75899999 75899999 + Intron SNP A C C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT10 3858 hgsc.bcm.edu;ucsc.edu 37 17 38977371 38977371 + Splice_Site SNP T T A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT12 3859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39021170 39021171 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT12 3859 hgsc.bcm.edu;ucsc.edu 37 17 39021185 39021185 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT13 3860 broad.mit.edu 37 17 39658558 39658558 + Intron DEL C - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT13 3860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39659227 39659227 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT13 3860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39659631 39659631 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT13 3860 hgsc.bcm.edu 37 17 39658938 39658938 + Splice_Site SNP C C T rs145167376 unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT1 3848 broad.mit.edu 37 12 53069236 53069256 + In_Frame_Del DEL TAGCTGCTACCTCCGGAGCCA - - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 TAGCTGCTACCTCCGGAGCCA TAGCTGCTACCTCCGGAGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT1 3848 broad.mit.edu 37 12 53069236 53069256 + In_Frame_Del DEL TAGCTGCTACCTCCGGAGCCA - - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 TAGCTGCTACCTCCGGAGCCA TAGCTGCTACCTCCGGAGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT1 3848 broad.mit.edu 37 12 53069236 53069256 + In_Frame_Del DEL TAGCTGCTACCTCCGGAGCCA - - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 TAGCTGCTACCTCCGGAGCCA TAGCTGCTACCTCCGGAGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT1 3848 broad.mit.edu 37 12 53069236 53069256 + In_Frame_Del DEL TAGCTGCTACCTCCGGAGCCA - - novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 TAGCTGCTACCTCCGGAGCCA TAGCTGCTACCTCCGGAGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT1 3848 broad.mit.edu;ucsc.edu 37 12 53069018 53069018 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT1 3848 hgsc.bcm.edu 37 12 53069223 53069243 + In_Frame_Del DEL ACCTCCGGAGCCGTAGCTGCT ACCTCCGGAGCCGTAGCTGCT - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 ACCTCCGGAGCCGTAGCTGCT ACCTCCGGAGCCGTAGCTGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT1 3848 hgsc.bcm.edu 37 12 53069223 53069243 + In_Frame_Del DEL ACCTCCGGAGCCGTAGCTGCT ACCTCCGGAGCCGTAGCTGCT - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 ACCTCCGGAGCCGTAGCTGCT ACCTCCGGAGCCGTAGCTGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT15 3866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39673185 39673185 + Missense_Mutation SNP C C T rs138271368 unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT15 3866 hgsc.bcm.edu 37 17 39672246 39672246 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT16 3868 broad.mit.edu 37 17 39768515 39768515 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT17 3872 broad.mit.edu 37 17 39775697 39775697 + 3'UTR SNP C G G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT17 3872 broad.mit.edu 37 17 39779138 39779138 + Intron SNP G C C novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT17 3872 hgsc.bcm.edu 37 17 39780391 39780392 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT18 3875 broad.mit.edu 37 12 53344268 53344268 + Intron SNP T G G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT18 3875 broad.mit.edu 37 12 53346304 53346304 + Intron SNP G C C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT18 3875 broad.mit.edu;hgsc.bcm.edu 37 12 53342910 53342910 + 5'UTR SNP C C T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT19 3880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39680198 39680198 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT20 54474 broad.mit.edu 37 17 39032535 39032535 + 3'UTR SNP A G G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT20 54474 broad.mit.edu 37 17 39032535 39032535 + 3'UTR SNP A G G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT222 125113 broad.mit.edu 37 17 38813462 38813463 + Intron INS - A A rs34128971 unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT222 125113 broad.mit.edu 37 17 38821207 38821207 + Intron SNP T A A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT23 25984 broad.mit.edu 37 17 39081564 39081564 + Intron SNP G C C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT23 25984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39086293 39086293 + Nonsense_Mutation SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT2 3849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53043743 53043743 + Silent SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT2 3849 broad.mit.edu;ucsc.edu 37 12 53045802 53045802 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT2 3849 hgsc.bcm.edu 37 12 53039079 53039079 + Silent SNP G G T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT2 3849 hgsc.bcm.edu 37 12 53042852 53042852 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT2 3849 hgsc.bcm.edu 37 12 53042852 53042852 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT2 3849 hgsc.bcm.edu 37 12 53045597 53045597 + Silent SNP A A T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT2 3849 hgsc.bcm.edu 37 12 53045615 53045615 + Silent SNP A A G rs75253159 bycluster;byfrequency TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT2 3849 hgsc.bcm.edu 37 12 53045840 53045840 + Silent SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT24 192666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38859430 38859430 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT24 192666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38859817 38859817 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT24 192666 hgsc.bcm.edu 37 17 38856334 38856335 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT25 147183 hgsc.bcm.edu;ucsc.edu 37 17 38905499 38905499 + Intron SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT26 353288 hgsc.bcm.edu;ucsc.edu 37 17 38925284 38925284 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT27 342574 broad.mit.edu;ucsc.edu 37 17 38933946 38933946 + Missense_Mutation SNP A T T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT27 342574 hgsc.bcm.edu;ucsc.edu 37 17 38933558 38933558 + Splice_Region SNP T T G novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT28 162605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38953169 38953169 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT31 3881 broad.mit.edu;hgsc.bcm.edu 37 17 39553695 39553695 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT32 3882 broad.mit.edu;hgsc.bcm.edu 37 17 39619147 39619147 + Silent SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53188042 53188042 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53185580 53185580 + Silent SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT3 3850 hgsc.bcm.edu 37 12 53189410 53189410 + Silent SNP A A C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53189410 53189410 + Silent SNP A A C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53189427 53189427 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53189428 53189428 + Silent SNP C C A rs184322044 by1000genomes TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53189428 53189428 + Silent SNP C C A rs184322044 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53189446 53189446 + Silent SNP C C T rs117364830 byfrequency;by1000genomes TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT3 3850 hgsc.bcm.edu 37 12 53189696 53189696 + Missense_Mutation SNP C C G rs28721426 bycluster;byfrequency;by1000genomes TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT35 3886 broad.mit.edu 37 17 39637366 39637366 + 5'UTR SNP A T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT35 3886 broad.mit.edu;hgsc.bcm.edu 37 17 39635602 39635602 + Silent SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT35 3886 hgsc.bcm.edu;ucsc.edu 37 17 39635663 39635663 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT36 8689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39643651 39643651 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT36 8689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39643672 39643672 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT37 8688 broad.mit.edu 37 17 39579887 39579887 + Intron SNP G A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT37 8688 broad.mit.edu;hgsc.bcm.edu 37 17 39579096 39579096 + Silent SNP G G A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT37 8688 hgsc.bcm.edu 37 17 39579168 39579168 + Silent SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT38 8687 hgsc.bcm.edu 37 17 39595484 39595484 + Nonsense_Mutation SNP G G A rs148768443 byfrequency TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT4 3851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53207418 53207418 + Missense_Mutation SNP T T C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT4 3851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53207945 53207945 + Silent SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT4 3851 hgsc.bcm.edu 37 12 53207576 53207576 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT4 3851 hgsc.bcm.edu 37 12 53207602 53207603 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT4 3851 hgsc.bcm.edu 37 12 53207602 53207603 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT4 3851 hgsc.bcm.edu 37 12 53207606 53207606 + Silent SNP G G A rs79164931 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT4 3851 hgsc.bcm.edu 37 12 53207990 53207990 + Silent SNP G G A novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT5 3852 broad.mit.edu 37 12 52908651 52908651 + 3'UTR SNP G T T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT5 3852 broad.mit.edu 37 12 52908651 52908651 + 3'UTR SNP G T T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT5 3852 broad.mit.edu;hgsc.bcm.edu 37 12 52910988 52910988 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT6A 3853 broad.mit.edu;hgsc.bcm.edu 37 12 52881498 52881498 + 3'UTR SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT6A 3853 hgsc.bcm.edu 37 12 52881649 52881649 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT6B 3854 broad.mit.edu;hgsc.bcm.edu 37 12 52842629 52842629 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT6B 3854 hgsc.bcm.edu;ucsc.edu 37 12 52843781 52843781 + Intron SNP G G C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT6C 286887 broad.mit.edu 37 12 52864378 52864378 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT6C 286887 hgsc.bcm.edu 37 12 52863663 52863663 + Silent SNP C C T rs11540291 unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT71 112802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52940112 52940112 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT71 112802 hgsc.bcm.edu 37 12 52946779 52946779 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT72 140807 broad.mit.edu 37 12 52979562 52979562 + 3'UTR SNP C A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT72 140807 hgsc.bcm.edu;ucsc.edu 37 12 52981581 52981581 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT73 319101 broad.mit.edu 37 12 53001781 53001781 + 3'UTR SNP A C C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT73 319101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53012201 53012201 + Silent SNP G G T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT73 319101 hgsc.bcm.edu;ucsc.edu 37 12 53009994 53009994 + Silent SNP C C T rs139888404 unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT73 319101 hgsc.bcm.edu;ucsc.edu 37 12 53011976 53011977 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT7 3855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52629134 52629134 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT74 121391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52967395 52967395 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT74 121391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52967397 52967397 + Silent SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT75 9119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52827998 52827998 + Missense_Mutation SNP G G A rs148964521 unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT75 9119 hgsc.bcm.edu 37 12 52824455 52824455 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT75 9119 hgsc.bcm.edu;ucsc.edu 37 12 52818423 52818423 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT76 51350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53162498 53162498 + Silent SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT76 51350 hgsc.bcm.edu 37 12 53162773 53162773 + Silent SNP A A G rs1464423 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT77 374454 hgsc.bcm.edu 37 12 53086577 53086577 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT78 196374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53242514 53242514 + Silent SNP C C T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT78 196374 hgsc.bcm.edu;ucsc.edu 37 12 53242598 53242615 + In_Frame_Del DEL CCTGCTGCTGAAGCCGCC CCTGCTGCTGAAGCCGCC - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 CCTGCTGCTGAAGCCGCC CCTGCTGCTGAAGCCGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT79 338785 broad.mit.edu;ucsc.edu 37 12 53216799 53216799 + Splice_Site SNP C T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT79 338785 hgsc.bcm.edu 37 12 53218102 53218103 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT80 144501 hgsc.bcm.edu 37 12 52565297 52565297 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT82 3888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52788815 52788815 + Missense_Mutation SNP G G A rs139996519 unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT82 3888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52793886 52793886 + Silent SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT82 3888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52795073 52795075 + Frame_Shift_Del DEL CTT CTT - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT82 3888 hgsc.bcm.edu 37 12 52797691 52797691 + Silent SNP G G A rs145667835 unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRT83 3889 hgsc.bcm.edu 37 12 52711741 52711743 + In_Frame_Del DEL CTT CTT - rs149269323 by1000genomes TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT8 3856 broad.mit.edu 37 12 53291008 53291008 + 3'UTR DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRT84 3890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52774232 52774232 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT85 3891 broad.mit.edu;hgsc.bcm.edu 37 12 52760791 52760791 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT85 3891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52756641 52756641 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRT86 3892 hgsc.bcm.edu;ucsc.edu 37 12 52695702 52695703 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP10-10 353333 broad.mit.edu 37 21 46057319 46057319 + 5'UTR SNP G T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-10 353333 hgsc.bcm.edu 37 21 46057625 46057625 + Silent SNP T T C rs55677560 bycluster TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-11 386678 broad.mit.edu;hgsc.bcm.edu 37 21 46066342 46066342 + 5'UTR SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-12 386685 broad.mit.edu 37 21 46117944 46117944 + 3'UTR SNP G C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-2 386679 hgsc.bcm.edu 37 21 45970772 45970772 + Silent SNP A A G rs76021731 unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-3 386682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45978577 45978577 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-3 386682 hgsc.bcm.edu 37 21 45978591 45978591 + Missense_Mutation SNP G G A rs79221051 bycluster;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP10-4 386672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45993662 45993662 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-5 386680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46000020 46000020 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-5 386680 hgsc.bcm.edu 37 21 45999613 45999613 + 3'UTR SNP A A G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-6 386674 broad.mit.edu 37 21 46011170 46011170 + 3'UTR SNP T C C rs233302 bycluster;byfrequency;by1000genomes TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-6 386674 broad.mit.edu 37 21 46011526 46011526 + Silent SNP T A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-6 386674 broad.mit.edu 37 21 46012219 46012220 + In_Frame_Ins INS - GGGGCGCAGCAGCTG GGGGCGCAGCAGCTG novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-6 386674 broad.mit.edu 37 21 46012291 46012291 + Silent SNP A G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-6 386674 hgsc.bcm.edu 37 21 46012219 46012220 + In_Frame_Ins INS - - GGGGCGCAGCAGCTG novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP10-8 386681 hgsc.bcm.edu 37 21 46032305 46032305 + Silent SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP10-9 386676 broad.mit.edu 37 21 46048132 46048132 + 3'UTR DEL C - - rs148315464 bycluster;by1000genomes TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-9 386676 broad.mit.edu 37 21 46048132 46048132 + 3'UTR DEL C - - rs148315464 bycluster;by1000genomes TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP10-9 386676 hgsc.bcm.edu 37 21 46047394 46047394 + Silent SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-1 81851 broad.mit.edu 37 17 39197549 39197549 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP1-1 81851 broad.mit.edu 37 17 39197549 39197549 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP1-1 81851 broad.mit.edu;ucsc.edu 37 17 39197549 39197549 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197538 39197538 + Missense_Mutation SNP G G T rs146863522 by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197549 39197549 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197609 39197609 + Missense_Mutation SNP C C A rs138200823 by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197614 39197614 + Silent SNP G G A rs141856614 by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197614 39197614 + Silent SNP G G A rs141856614 by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197638 39197638 + Silent SNP A A G rs112542604 by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP12-1 353332 broad.mit.edu 37 21 46101556 46101556 + 3'UTR DEL T - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP12-3 386683 hgsc.bcm.edu 37 21 46078132 46078132 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP13-1 140258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31768458 31768458 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP13-1 140258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31768847 31768847 + Missense_Mutation SNP G G C rs151147550 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP13-2 337959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31744251 31744251 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP13-3 337960 hgsc.bcm.edu 37 21 31797889 31797889 + Silent SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP13-4 284827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31802847 31802847 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-3 81850 broad.mit.edu 37 17 39190639 39190639 + Silent SNP G A A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP1-3 81850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39191063 39191063 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-3 81850 hgsc.bcm.edu 37 17 39190953 39190953 + Missense_Mutation SNP G G C rs78298475 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-3 81850 hgsc.bcm.edu 37 17 39190954 39190954 + Silent SNP G G A rs75033421 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP15-1 254950 broad.mit.edu;hgsc.bcm.edu 37 21 31812784 31812784 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP1-5 83895 broad.mit.edu 37 17 39183145 39183145 + Missense_Mutation SNP A G G novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP19-2 337969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31859596 31859596 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP19-3 337970 broad.mit.edu 37 21 31863890 31863891 + 3'UTR DEL AA - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP19-6 337973 hgsc.bcm.edu 37 21 31913982 31913982 + Frame_Shift_Del DEL G G - rs146186553 bycluster;by1000genomes TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP19-6 337973 hgsc.bcm.edu 37 21 31913982 31913982 + Frame_Shift_Del DEL G G - rs146186553 bycluster;by1000genomes TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP19-8 728299 hgsc.bcm.edu 37 21 32410670 32410671 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP22-1 337979 broad.mit.edu;ucsc.edu 37 21 31973474 31973474 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP25-1 100131902 hgsc.bcm.edu;ucsc.edu 37 21 31661643 31661643 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP3-3 85293 hgsc.bcm.edu;ucsc.edu 37 17 39150329 39150329 + Silent SNP T T G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP4-11 653240 broad.mit.edu 37 17 39274150 39274150 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-11 653240 broad.mit.edu 37 17 39274206 39274206 + Missense_Mutation SNP C T T rs79388709 unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-11 653240 broad.mit.edu 37 17 39274291 39274291 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-11 653240 broad.mit.edu 37 17 39274415 39274415 + Silent SNP C T T rs425487 unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-12 83755 broad.mit.edu;hgsc.bcm.edu 37 17 39279933 39279933 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-1 85285 broad.mit.edu 37 17 39340475 39340477 + Splice_Site DEL TGC - - rs5820392 bycluster;by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 TGC TGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-1 85285 broad.mit.edu;ucsc.edu 37 17 39340703 39340703 + Missense_Mutation SNP G C C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-1 85285 hgsc.bcm.edu 37 17 39340729 39340729 + Silent SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-1 85285 hgsc.bcm.edu 37 17 39340796 39340852 + Frame_Shift_Del DEL CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-1 85285 hgsc.bcm.edu 37 17 39340812 39340812 + Intron SNP T T C rs483929 bycluster;by1000genomes TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-1 85285 hgsc.bcm.edu;ucsc.edu 37 17 39341039 39341039 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-2 85291 broad.mit.edu;hgsc.bcm.edu 37 17 39334330 39334330 + Silent SNP G G T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-3 85290 hgsc.bcm.edu 37 17 39324284 39324284 + Silent SNP G G A rs78226710 byfrequency TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-4 84616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39316569 39316569 + Nonsense_Mutation SNP G G T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-7 100132476 broad.mit.edu 37 17 39240627 39240627 + Missense_Mutation SNP T C C rs189343211 unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-8 728224 broad.mit.edu 37 17 39253956 39253956 + Silent SNP G A A rs76327324 byfrequency TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-8 728224 broad.mit.edu 37 17 39254054 39254054 + Missense_Mutation SNP A T T rs76270529 unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-8 728224 hgsc.bcm.edu 37 17 39254247 39254247 + Nonsense_Mutation SNP A A T rs137943557 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP4-9 100132386 broad.mit.edu 37 17 39261693 39261693 + Missense_Mutation SNP A T T rs113059833 bycluster TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-9 100132386 broad.mit.edu 37 17 39261865 39261865 + Nonsense_Mutation SNP C A A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP4-9 100132386 broad.mit.edu 37 17 39261882 39261882 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-10 387273 broad.mit.edu 37 11 71277393 71277393 + 3'UTR SNP T C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-10 387273 hgsc.bcm.edu 37 11 71276827 71276827 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP5-10 387273 hgsc.bcm.edu 37 11 71276888 71276888 + Silent SNP T T C rs12793134 bycluster TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-10 387273 hgsc.bcm.edu 37 11 71276939 71276939 + Silent SNP G G A rs111317671 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-11 440051 hgsc.bcm.edu 37 11 71293803 71293805 + In_Frame_Del DEL GCC GCC - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-11 440051 hgsc.bcm.edu 37 11 71293818 71293818 + Silent SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-1 387264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1605898 1605898 + Silent SNP C C T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-1 387264 hgsc.bcm.edu 37 11 1606121 1606150 + In_Frame_Del DEL CCACAGCCACCCTTGGATCCCCCACAAGAG CCACAGCCACCCTTGGATCCCCCACAAGAG - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 CCACAGCCACCCTTGGATCCCCCACAAGAG CCACAGCCACCCTTGGATCCCCCACAAGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-1 387264 hgsc.bcm.edu 37 11 1606129 1606129 + Silent SNP A A C rs76191756 bycluster;byfrequency;by1000genomes TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP5-1 387264 hgsc.bcm.edu 37 11 1606138 1606138 + Silent SNP T T G rs80025267 bycluster;byfrequency;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP5-2 440021 hgsc.bcm.edu 37 11 1619173 1619202 + In_Frame_Del DEL CCCCCACAGGAGCCACAGCCCCCCTTGGAG CCCCCACAGGAGCCACAGCCCCCCTTGGAG - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 CCCCCACAGGAGCCACAGCCCCCCTTGGAG CCCCCACAGGAGCCACAGCCCCCCTTGGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-2 440021 hgsc.bcm.edu 37 11 1619173 1619202 + In_Frame_Del DEL CCCCCACAGGAGCCACAGCCCCCCTTGGAG CCCCCACAGGAGCCACAGCCCCCCTTGGAG - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CCCCCACAGGAGCCACAGCCCCCCTTGGAG CCCCCACAGGAGCCACAGCCCCCCTTGGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-2 440021 hgsc.bcm.edu 37 11 1619181 1619181 + Silent SNP G G A rs61869704 unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-3 387266 hgsc.bcm.edu 37 11 1629359 1629359 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-4 387267 broad.mit.edu 37 11 1642604 1642604 + 3'UTR SNP A T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-4 387267 broad.mit.edu 37 11 1643006 1643006 + Silent SNP G C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-4 387267 broad.mit.edu 37 11 1643335 1643335 + 5'UTR SNP A G G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-4 387267 broad.mit.edu;hgsc.bcm.edu 37 11 1643255 1643255 + Silent SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-4 387267 hgsc.bcm.edu 37 11 1642703 1642703 + Silent SNP A A G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-5 439915 broad.mit.edu;hgsc.bcm.edu 37 11 1651231 1651231 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-5 439915 hgsc.bcm.edu 37 11 1651120 1651120 + Missense_Mutation SNP G G T rs66665994 bycluster;by1000genomes TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP5-5 439915 hgsc.bcm.edu 37 11 1651228 1651228 + Missense_Mutation SNP C C G rs71454096 bycluster;by1000genomes TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP5-5 439915 hgsc.bcm.edu 37 11 1651228 1651228 + Missense_Mutation SNP C C G rs71454096 bycluster;by1000genomes TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP5-7 440050 broad.mit.edu 37 11 71238705 71238705 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-7 440050 broad.mit.edu 37 11 71238705 71238705 + Missense_Mutation SNP G A A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP5-8 57830 hgsc.bcm.edu 37 11 71249532 71249532 + Missense_Mutation SNP C C G rs11234084 unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-8 57830 hgsc.bcm.edu 37 11 71249558 71249558 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP5-9 3846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71260168 71260168 + Silent SNP C C A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP7-1 337878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 32202006 32202006 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP7-1 337878 hgsc.bcm.edu 37 21 32201969 32201969 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP7-1 337878 hgsc.bcm.edu 37 21 32201969 32201969 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP9-2 83899 hgsc.bcm.edu 37 17 39383027 39383027 + Missense_Mutation SNP G G T rs71371478 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP9-2 83899 hgsc.bcm.edu 37 17 39383323 39383334 + In_Frame_Del DEL CTGCTGCCAGCC CTGCTGCCAGCC - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 CTGCTGCCAGCC CTGCTGCCAGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP9-2 83899 hgsc.bcm.edu 37 17 39383323 39383334 + In_Frame_Del DEL CTGCTGCCAGCC CTGCTGCCAGCC - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 CTGCTGCCAGCC CTGCTGCCAGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP9-4 85280 hgsc.bcm.edu 37 17 39406343 39406343 + Missense_Mutation SNP A A G rs76766237 unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTAP9-9 81870 broad.mit.edu 37 17 39412339 39412340 + 3'UTR INS - C C novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTAP9-9 81870 hgsc.bcm.edu 37 17 39412063 39412063 + Silent SNP C C A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KRTCAP2 200185 broad.mit.edu 37 1 155145437 155145437 + Intron SNP A G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KRTCAP2 200185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155145769 155145771 + In_Frame_Del DEL CTA CTA - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 CTA CTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KSR1 8844 broad.mit.edu 37 17 25936969 25936969 + Intron SNP T C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KSR1 8844 hgsc.bcm.edu;ucsc.edu 37 17 25919598 25919598 + Silent SNP G G T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KSR1 8844 hgsc.bcm.edu;ucsc.edu 37 17 25936231 25936231 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KSR2 283455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 118020150 118020150 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq KSR2 283455 hgsc.bcm.edu 37 12 118105409 118105409 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KTELC1 0 broad.mit.edu 37 3 119198873 119198873 + Intron SNP G A A rs4688007 bycluster;byfrequency;byhapmap;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KTI12 112970 broad.mit.edu 37 1 52498351 52498351 + 3'UTR SNP C T T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx KTI12 112970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 52498994 52498994 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq KTN1 3895 hgsc.bcm.edu;ucsc.edu 37 14 56103977 56103977 + Silent SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KTN1 3895 hgsc.bcm.edu;ucsc.edu 37 14 56137506 56137506 + Silent SNP T T A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KY 339855 broad.mit.edu 37 3 134327334 134327337 + Intron DEL CACT - - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 CACT CACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx L1CAM 3897 broad.mit.edu 37 X 153130647 153130647 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx L1CAM 3897 broad.mit.edu 37 X 153135050 153135050 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx L1CAM 3897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153129373 153129373 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1CAM 3897 hgsc.bcm.edu 37 X 153130543 153130543 + Silent SNP G G A rs35902890 bycluster;byfrequency;alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1CAM 3897 hgsc.bcm.edu 37 X 153131183 153131183 + Silent SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID L1CAM 3897 hgsc.bcm.edu 37 X 153131183 153131183 + Silent SNP G G A novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID L1CAM 3897 hgsc.bcm.edu 37 X 153131185 153131185 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID L1TD1 54596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62673128 62673128 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62672389 62672390 + In_Frame_Ins INS - - AACAGA novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62675673 62675673 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62675673 62675673 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62675674 62675674 + Missense_Mutation SNP C C A rs141196718 by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62675674 62675674 + Missense_Mutation SNP C C A rs141196718 by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62676248 62676251 + Frame_Shift_Del DEL AACT AACT - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 AACT AACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L1TD1 54596 hgsc.bcm.edu 37 1 62676248 62676251 + Frame_Shift_Del DEL AACT AACT - novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 AACT AACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L2HGDH 79944 broad.mit.edu 37 14 50736035 50736035 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx L3MBTL 0 hgsc.bcm.edu 37 20 42162041 42162041 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID L3MBTL2 83746 broad.mit.edu 37 22 41609749 41609749 + Intron SNP C A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx L3MBTL2 83746 broad.mit.edu;hgsc.bcm.edu 37 22 41605639 41605639 + Intron SNP C C T rs62889861 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L3MBTL4 91133 broad.mit.edu;hgsc.bcm.edu 37 18 6215828 6215828 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L3MBTL4 91133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6311557 6311557 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq L3MBTL4 91133 hgsc.bcm.edu;ucsc.edu 37 18 5960153 5960153 + Silent SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LACRT 90070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55026040 55026040 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LACRT 90070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55026135 55026135 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LACTB 114294 broad.mit.edu 37 15 63421946 63421946 + Intron SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LACTB 114294 broad.mit.edu 37 15 63421946 63421946 + Intron SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LACTB 114294 broad.mit.edu 37 15 63421946 63421946 + Intron SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LACTB 114294 broad.mit.edu 37 15 63421946 63421946 + Intron SNP A C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LACTB 114294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63419762 63419762 + Silent SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAD1 3898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201353894 201353894 + Intron SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAD1 3898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201354881 201354881 + Missense_Mutation SNP C C A rs143101113 unknown;alternate_allele TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAD1 3898 broad.mit.edu;ucsc.edu 37 1 201354880 201354880 + Silent SNP T G G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAD1 3898 hgsc.bcm.edu 37 1 201356002 201356004 + In_Frame_Del DEL CCA CCA - rs139441737 bycluster;by1000genomes TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAD1 3898 hgsc.bcm.edu 37 1 201356002 201356004 + In_Frame_Del DEL CCA CCA - rs139441737 bycluster;by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAG3 3902 broad.mit.edu 37 12 6882234 6882234 + Intron SNP G A A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAIR1 3903 broad.mit.edu 37 19 54876460 54876460 + 5'UTR SNP G A A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAIR1 3903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54872809 54872809 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAIR2 3904 broad.mit.edu;ucsc.edu 37 19 55019389 55019389 + Silent SNP G T T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAIR2 3904 hgsc.bcm.edu 37 19 55020248 55020248 + Missense_Mutation SNP G G C rs12949 by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LALBA 3906 hgsc.bcm.edu;ucsc.edu 37 12 48961740 48961740 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA1 284217 broad.mit.edu 37 18 6941968 6941968 + 3'UTR SNP C T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMA1 284217 broad.mit.edu 37 18 6955495 6955495 + Intron SNP C T T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6966196 6966196 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6980564 6980564 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6983124 6983124 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6983136 6983136 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7009293 7009293 + Missense_Mutation SNP C C T rs149753863 byfrequency TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7026067 7026067 + Silent SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7032162 7032162 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7036007 7036007 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7042148 7042148 + Silent SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LAMA1 284217 hgsc.bcm.edu 37 18 7023198 7023198 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA1 284217 hgsc.bcm.edu;ucsc.edu 37 18 7008502 7008502 + Silent SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129371227 129371227 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129588309 129588309 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129588336 129588336 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129663519 129663519 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129799907 129799907 + Silent SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA2 3908 hgsc.bcm.edu 37 6 129796548 129796548 + Splice_Site SNP T T C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA2 3908 hgsc.bcm.edu;ucsc.edu 37 6 129419358 129419358 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA3 3909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21417039 21417039 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA3 3909 broad.mit.edu;ucsc.edu 37 18 21508604 21508604 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMA3 3909 hgsc.bcm.edu 37 18 21353525 21353525 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA3 3909 hgsc.bcm.edu 37 18 21441702 21441702 + Silent SNP T T C rs35565501 bycluster;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA3 3909 hgsc.bcm.edu 37 18 21441744 21441744 + Silent SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA3 3909 hgsc.bcm.edu 37 18 21470048 21470048 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA3 3909 hgsc.bcm.edu;ucsc.edu 37 18 21353526 21353527 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA3 3909 hgsc.bcm.edu;ucsc.edu 37 18 21406683 21406683 + Silent SNP C C A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA3 3909 hgsc.bcm.edu;ucsc.edu 37 18 21422710 21422710 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112441543 112441543 + Silent SNP A A T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112471821 112471821 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112513053 112513053 + Splice_Site SNP C C G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112575349 112575349 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA4 3910 broad.mit.edu;ucsc.edu 37 6 112441542 112441542 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMA4 3910 hgsc.bcm.edu 37 6 112455692 112455692 + Silent SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMA4 3910 hgsc.bcm.edu;ucsc.edu 37 6 112522880 112522880 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA5 3911 broad.mit.edu 37 20 60895706 60895706 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMA5 3911 broad.mit.edu;hgsc.bcm.edu 37 20 60888399 60888399 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA5 3911 broad.mit.edu;hgsc.bcm.edu 37 20 60921136 60921136 + Splice_Site SNP C C T rs112620160 unknown;alternate_allele TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA5 3911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60895846 60895846 + Silent SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA5 3911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60904899 60904899 + Silent SNP C C G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA5 3911 hgsc.bcm.edu 37 20 60902342 60902342 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMA5 3911 hgsc.bcm.edu 37 20 60906109 60906109 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMB1 3912 broad.mit.edu 37 7 107569729 107569729 + Intron SNP A G G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMB1 3912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107564469 107564469 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB1 3912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107596066 107596066 + Silent SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB1 3912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107605113 107605113 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB2 3913 broad.mit.edu 37 3 49168474 49168474 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMB2 3913 broad.mit.edu;hgsc.bcm.edu 37 3 49158615 49158615 + 3'UTR SNP C C T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB2 3913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49160288 49160288 + Silent SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB2 3913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49169156 49169156 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB2 3913 hgsc.bcm.edu 37 3 49159423 49159423 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMB3 3914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 209799337 209799337 + Silent SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB3 3914 hgsc.bcm.edu 37 1 209796913 209796913 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMB3 3914 hgsc.bcm.edu 37 1 209796944 209796950 + Frame_Shift_Del DEL TGCCGCA TGCCGCA - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 TGCCGCA TGCCGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB3 3914 hgsc.bcm.edu 37 1 209799286 209799286 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB3 3914 hgsc.bcm.edu 37 1 209807972 209807972 + Silent SNP G G A rs1130667 bycluster;byfrequency;byhapmap;by1000genomes TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMB4 22798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107717486 107717486 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB4 22798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107720165 107720165 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB4 22798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107763582 107763582 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMB4 22798 hgsc.bcm.edu 37 7 107748183 107748183 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMC1 3915 broad.mit.edu;hgsc.bcm.edu 37 1 183072788 183072788 + Intron SNP C C G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC1 3915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183086460 183086460 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC1 3915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183102612 183102612 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC1 3915 hgsc.bcm.edu;ucsc.edu 37 1 183094629 183094629 + Frame_Shift_Del DEL C C - novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu 37 1 183195848 183195848 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183177097 183177097 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183177098 183177098 + Silent SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183194784 183194784 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183196680 183196680 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183197726 183197726 + Silent SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183204764 183204764 + Nonsense_Mutation SNP T T G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC3 10319 broad.mit.edu 37 9 133901946 133901947 + Frame_Shift_Del DEL CT - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMC3 10319 broad.mit.edu;hgsc.bcm.edu 37 9 133911651 133911651 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC3 10319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133911635 133911635 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC3 10319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133914405 133914405 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC3 10319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133914596 133914596 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC3 10319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133942552 133942552 + Silent SNP C C T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMC3 10319 hgsc.bcm.edu 37 9 133928345 133928345 + Silent SNP C C T rs12349966 bycluster;byfrequency;by1000genomes TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMC3 10319 hgsc.bcm.edu 37 9 133942399 133942399 + Silent SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMC3 10319 hgsc.bcm.edu;ucsc.edu 37 9 133942465 133942465 + Silent SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMP2 3920 hgsc.bcm.edu;ucsc.edu 37 X 119562465 119562465 + Silent SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMP2 3920 hgsc.bcm.edu;ucsc.edu 37 X 119581775 119581775 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAMP3 27074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182871518 182871518 + Silent SNP A A G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMP3 27074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182871600 182871600 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAMP3 27074 broad.mit.edu;ucsc.edu 37 3 182871951 182871951 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAMTOR1 55004 hgsc.bcm.edu 37 11 71809888 71809888 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LANCL2 55915 hgsc.bcm.edu 37 7 55466150 55466150 + Silent SNP C C T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAP3 51056 broad.mit.edu 37 4 17579162 17579162 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAP3 51056 broad.mit.edu;hgsc.bcm.edu 37 4 17609234 17609234 + 3'UTR SNP T T G novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAP3 51056 hgsc.bcm.edu 37 4 17579091 17579091 + Missense_Mutation SNP G G A rs139709924 unknown;alternate_allele TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAPTM4A 9741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20237323 20237323 + Silent SNP T T G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAPTM4B 55353 broad.mit.edu 37 8 98787866 98787866 + 5'UTR SNP G T T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAPTM4B 55353 hgsc.bcm.edu 37 8 98817636 98817636 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LARGE 9215 broad.mit.edu;hgsc.bcm.edu 37 22 33700423 33700423 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARGE 9215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 33780246 33780246 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1 23367 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154179286 154179286 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1 23367 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154181675 154181676 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1 23367 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154183854 154183854 + Missense_Mutation SNP A A T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1 23367 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154191178 154191185 + Frame_Shift_Del DEL GTCTTGAA GTCTTGAA - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 GTCTTGAA GTCTTGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1 23367 hgsc.bcm.edu;ucsc.edu 37 5 154185452 154185452 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LARP1B 55132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129012653 129012653 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1B 55132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129043237 129043237 + Missense_Mutation SNP G G C rs142360155 unknown;alternate_allele TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP1B 55132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129128464 129128464 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP4 113251 broad.mit.edu 37 12 50794655 50794655 + 5'UTR SNP A G G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LARP4 113251 broad.mit.edu 37 12 50794655 50794655 + 5'UTR SNP A G G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LARP4 113251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50821653 50821653 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARP6 55323 hgsc.bcm.edu 37 15 71124525 71124525 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LARP6 55323 hgsc.bcm.edu 37 15 71125110 71125110 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LARS2 23395 hgsc.bcm.edu 37 3 45583404 45583404 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LARS 51520 broad.mit.edu 37 5 145562154 145562154 + 5'UTR SNP C G G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LARS 51520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145524053 145524053 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARS 51520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145557190 145557190 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARS 51520 hgsc.bcm.edu 37 5 145543912 145543913 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LARS 51520 hgsc.bcm.edu 37 5 145543912 145543913 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAS1L 81887 broad.mit.edu 37 X 64738891 64738891 + Intron DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LAS1L 81887 hgsc.bcm.edu 37 X 64744051 64744051 + Silent SNP C C A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LASP1 3927 broad.mit.edu 37 17 37026398 37026398 + 5'UTR SNP A T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LASP1 3927 broad.mit.edu 37 17 37075097 37075097 + 3'UTR SNP G A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LASS2 0 broad.mit.edu;hgsc.bcm.edu 37 1 150938559 150938559 + 3'UTR SNP A A C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS2 0 broad.mit.edu;hgsc.bcm.edu 37 1 150939613 150939613 + Silent SNP G G T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150939585 150939585 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS2 0 hgsc.bcm.edu;ucsc.edu 37 1 150938648 150938648 + Silent SNP A A G novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LASS3 0 broad.mit.edu;hgsc.bcm.edu 37 15 100943022 100943022 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101009686 101009686 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS3 0 hgsc.bcm.edu;ucsc.edu 37 15 101031104 101031104 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LASS4 0 hgsc.bcm.edu 37 19 8316056 8316056 + Silent SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LASS4 0 hgsc.bcm.edu 37 19 8316056 8316056 + Silent SNP C C T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LASS4 0 hgsc.bcm.edu;ucsc.edu 37 19 8322788 8322790 + In_Frame_Del DEL AGT AGT - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 AGT AGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS4 0 hgsc.bcm.edu;ucsc.edu 37 19 8322833 8322835 + In_Frame_Del DEL TCT TCT - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LASS6 0 broad.mit.edu;hgsc.bcm.edu 37 2 169622847 169622847 + Intron SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAT2 7462 hgsc.bcm.edu;ucsc.edu 37 7 73638987 73638987 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LATS1 9113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150004564 150004564 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LATS1 9113 broad.mit.edu;ucsc.edu 37 6 150023180 150023180 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LATS1 9113 hgsc.bcm.edu;ucsc.edu 37 6 150001249 150001249 + Silent SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID LATS2 26524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21557681 21557681 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LATS2 26524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21562131 21562131 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LATS2 26524 hgsc.bcm.edu;ucsc.edu 37 13 21557521 21557521 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID LATS2 26524 hgsc.bcm.edu;ucsc.edu 37 13 21557669 21557669 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID LATS2 26524 hgsc.bcm.edu;ucsc.edu 37 13 21557772 21557773 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LAX1 54900 hgsc.bcm.edu;ucsc.edu 37 1 203741246 203741246 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LAYN 143903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111431066 111431066 + Silent SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LBH 81606 broad.mit.edu 37 2 30454520 30454520 + 5'UTR SNP C G G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LBH 81606 broad.mit.edu 37 2 30480654 30480656 + 3'UTR DEL GCC - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LBH 81606 hgsc.bcm.edu 37 2 30480413 30480413 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LBP 3929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36978015 36978015 + Silent SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LBP 3929 hgsc.bcm.edu 37 20 36982823 36982823 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LBR 3930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225599096 225599096 + Silent SNP T T A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LBX2 85474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74725150 74725150 + Silent SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCA5 167691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 80203392 80203392 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCAT 3931 hgsc.bcm.edu;ucsc.edu 37 16 67974104 67974117 + Frame_Shift_Del DEL GCCCACGCCGTAAA GCCCACGCCGTAAA - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GCCCACGCCGTAAA GCCCACGCCGTAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCE1B 353132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152785104 152785104 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCE1B 353132 hgsc.bcm.edu 37 1 152785261 152785261 + Missense_Mutation SNP C C G rs76754774 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCE1E 353135 broad.mit.edu;hgsc.bcm.edu 37 1 152759771 152759771 + 5'UTR SNP C C A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCE1E 353135 hgsc.bcm.edu 37 1 152760113 152760115 + In_Frame_Del DEL ACT ACT - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 ACT ACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCE1F 353137 hgsc.bcm.edu 37 1 152749037 152749042 + In_Frame_Del DEL GGTGGT GGTGGT - rs149277953 by1000genomes TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 GGTGGT GGTGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCE3E 353145 broad.mit.edu;hgsc.bcm.edu 37 1 152538366 152538366 + 3'UTR SNP T T G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCLAT1 253558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 30756119 30756119 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCLAT1 253558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 30785088 30785088 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCMT1 51451 broad.mit.edu 37 16 25189485 25189485 + 3'UTR SNP C T T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LCMT1 51451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 25162930 25162930 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCMT2 9836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43621597 43621597 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCMT2 9836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43621613 43621613 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCMT2 9836 hgsc.bcm.edu 37 15 43621544 43621544 + Silent SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCMT2 9836 hgsc.bcm.edu;ucsc.edu 37 15 43621583 43621583 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCN12 286256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139849846 139849846 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCN1 3933 broad.mit.edu 37 9 138416709 138416709 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LCN1 3933 broad.mit.edu;hgsc.bcm.edu 37 9 138413417 138413417 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCN1 3933 hgsc.bcm.edu 37 9 138414015 138414016 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCN6 158062 broad.mit.edu 37 9 139642142 139642142 + Intron DEL C - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LCN6 158062 broad.mit.edu 37 9 139642146 139642146 + Intron DEL C - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LCN6 158062 broad.mit.edu 37 9 139642171 139642172 + Intron INS - C C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LCN9 392399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138555246 138555246 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCOR 84458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98715214 98715214 + Silent SNP A A G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCORL 254251 broad.mit.edu 37 4 17847182 17847182 + 3'UTR DEL A - - rs138876030 bycluster;by1000genomes TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LCORL 254251 hgsc.bcm.edu 37 4 17886342 17886342 + Intron SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCORL 254251 hgsc.bcm.edu;ucsc.edu 37 4 17885441 17885441 + Intron SNP T T A novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCP1 3936 hgsc.bcm.edu 37 13 46717458 46717459 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCP1 3936 hgsc.bcm.edu 37 13 46717458 46717459 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCP2 3937 broad.mit.edu;hgsc.bcm.edu 37 5 169694070 169694070 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCP2 3937 hgsc.bcm.edu;ucsc.edu 37 5 169720396 169720396 + Intron SNP G G C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCT 3938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 136566891 136566891 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LCT 3938 hgsc.bcm.edu;ucsc.edu 37 2 136566271 136566271 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCT 3938 hgsc.bcm.edu;ucsc.edu 37 2 136566910 136566910 + Silent SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LCTL 197021 broad.mit.edu 37 15 66853375 66853375 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LDB1 8861 hgsc.bcm.edu;ucsc.edu 37 10 103870867 103870868 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LDB3 11155 broad.mit.edu 37 10 88466360 88466360 + Silent SNP A C C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LDB3 11155 broad.mit.edu 37 10 88476170 88476170 + Missense_Mutation SNP T C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LDB3 11155 hgsc.bcm.edu 37 10 88476148 88476148 + Silent SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDB3 11155 hgsc.bcm.edu 37 10 88476148 88476148 + Silent SNP C C A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDB3 11155 hgsc.bcm.edu 37 10 88476182 88476182 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDHA 3939 hgsc.bcm.edu 37 11 18424451 18424451 + Silent SNP C C T rs5030621 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDHAL6A 160287 broad.mit.edu 37 11 18477953 18477954 + Intron INS - CT CT novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LDHAL6A 160287 broad.mit.edu 37 11 18477953 18477954 + Intron INS - CT CT novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LDHAL6A 160287 broad.mit.edu 37 11 18478173 18478173 + Intron SNP A G G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LDHAL6B 92483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59499176 59499176 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LDHB 3945 hgsc.bcm.edu;ucsc.edu 37 12 21791314 21791314 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDHC 3948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18460186 18460186 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LDLR 3949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11224382 11224382 + Silent SNP G G A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LDLR 3949 hgsc.bcm.edu;ucsc.edu 37 19 11217289 11217289 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDLRAD1 388633 hgsc.bcm.edu;ucsc.edu 37 1 54477874 54477874 + Silent SNP C C T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDLRAD1 388633 hgsc.bcm.edu;ucsc.edu 37 1 54483033 54483033 + Intron SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LDLRAD2 401944 hgsc.bcm.edu;ucsc.edu 37 1 22148091 22148091 + Silent SNP C C T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LDOC1L 84247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 44893405 44893405 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEAP2 116842 hgsc.bcm.edu;ucsc.edu 37 5 132209384 132209384 + 5'UTR SNP A A T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LECT1 11061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 53313233 53313233 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEF1 51176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109004590 109004590 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEF1 51176 hgsc.bcm.edu 37 4 109084820 109084820 + Silent SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEFTY1 10637 broad.mit.edu 37 1 226075411 226075411 + Intron DEL C - - novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LEFTY1 10637 broad.mit.edu 37 1 226075411 226075411 + Intron DEL C - - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LELP1 149018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153177408 153177408 + Silent SNP C C A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEMD1 93273 broad.mit.edu 37 1 205350814 205350814 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LEMD2 221496 broad.mit.edu 37 6 33754592 33754592 + Intron SNP G A A rs4711351 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LEMD3 23592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 65564430 65564430 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LENEP 55891 broad.mit.edu 37 1 154966078 154966078 + 5'UTR SNP G A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LENG1 79165 hgsc.bcm.edu 37 19 54663351 54663351 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LENG8 114823 hgsc.bcm.edu 37 19 54969354 54969354 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LENG9 94059 broad.mit.edu;ucsc.edu 37 19 54973869 54973869 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LEO1 123169 hgsc.bcm.edu 37 15 52246708 52246708 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEO1 123169 hgsc.bcm.edu 37 15 52254683 52254683 + Silent SNP T T C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LEO1 123169 hgsc.bcm.edu;ucsc.edu 37 15 52242167 52242167 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LEP 3952 hgsc.bcm.edu;ucsc.edu 37 7 127894682 127894682 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEPR 3953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 66067338 66067338 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEPRE1 64175 hgsc.bcm.edu;ucsc.edu 37 1 43228105 43228105 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LEPREL1 55214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 189689771 189689771 + Silent SNP G G T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEPREL4 10609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39967279 39967279 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LEPROTL1 23484 broad.mit.edu 37 8 29994916 29994916 + Silent SNP T G G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LETM1 3954 hgsc.bcm.edu 37 4 1823987 1823988 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LETMD1 25875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51449626 51449626 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LETMD1 25875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51449970 51449970 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LETMD1 25875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51450212 51450212 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGALS12 85329 hgsc.bcm.edu 37 11 63276054 63276054 + Silent SNP A A G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGALS12 85329 hgsc.bcm.edu 37 11 63278527 63278527 + Intron SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGALS12 85329 hgsc.bcm.edu 37 11 63278527 63278527 + Intron SNP G G C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGALS13 29124 broad.mit.edu;hgsc.bcm.edu 37 19 40098030 40098030 + 3'UTR SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGALS14 56891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40199946 40199946 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGALS8 3964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236711354 236711354 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGALS9B 284194 broad.mit.edu 37 17 20370782 20370783 + Frame_Shift_Ins INS - TC TC novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LGALS9B 284194 hgsc.bcm.edu 37 17 20359942 20359942 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGALS9B 284194 hgsc.bcm.edu 37 17 20370782 20370783 + Frame_Shift_Ins INS - - TC novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGALS9B 284194 hgsc.bcm.edu 37 17 20370782 20370783 + Frame_Shift_Ins INS - - TC novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGALS9C 654346 broad.mit.edu 37 17 18380154 18380154 + 5'UTR SNP A G G rs1682220 bycluster;byfrequency;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LGALS9C 654346 hgsc.bcm.edu;ucsc.edu 37 17 18387268 18387268 + Missense_Mutation SNP G G C rs1682207 bycluster TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGI1 9211 hgsc.bcm.edu;ucsc.edu 37 10 95557392 95557392 + Silent SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGI2 55203 broad.mit.edu 37 4 25003443 25003443 + 3'UTR DEL A - - rs147003339 bycluster;by1000genomes TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LGI2 55203 broad.mit.edu 37 4 25004856 25004856 + 3'UTR DEL T - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LGI2 55203 broad.mit.edu;ucsc.edu 37 4 25032128 25032128 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LGI2 55203 hgsc.bcm.edu 37 4 25032135 25032135 + Missense_Mutation SNP C C T rs74901868 bycluster;byfrequency;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGI4 163175 hgsc.bcm.edu;ucsc.edu 37 19 35622768 35622768 + Intron SNP G G T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGR4 55366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 27390552 27390552 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGR6 59352 broad.mit.edu;hgsc.bcm.edu 37 1 202287589 202287589 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LGR6 59352 hgsc.bcm.edu 37 1 202273686 202273686 + Splice_Site SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGSN 51557 broad.mit.edu;ucsc.edu 37 6 63990712 63990712 + Nonsense_Mutation SNP A C C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LGTN 100529141 hgsc.bcm.edu 37 1 206776435 206776435 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LGTN 100529141 hgsc.bcm.edu;ucsc.edu 37 1 206776436 206776436 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LHB 3972 hgsc.bcm.edu 37 19 49520301 49520301 + Intron SNP G G C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LHCGR 3973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48960052 48960052 + Intron SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHFP 10186 broad.mit.edu 37 13 39917692 39917692 + 3'UTR DEL A - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LHFP 10186 broad.mit.edu 37 13 40106434 40106434 + Intron DEL C - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LHFPL1 340596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 111874741 111874741 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHFPL1 340596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 111914248 111914248 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHFPL3 375612 broad.mit.edu 37 7 103969251 103969251 + Silent SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LHFPL4 375323 hgsc.bcm.edu 37 3 9543917 9543917 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LHX1 3975 broad.mit.edu 37 17 35299577 35299577 + Silent SNP C T T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LHX1 3975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35297675 35297675 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHX1 3975 hgsc.bcm.edu;ucsc.edu 37 17 35295520 35295520 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHX2 9355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 126783560 126783560 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHX6 26468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 124975917 124975917 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LHX8 431707 hgsc.bcm.edu;ucsc.edu 37 1 75608988 75608988 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LHX9 56956 broad.mit.edu 37 1 197886867 197886867 + 5'UTR SNP C G G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LHX9 56956 broad.mit.edu;hgsc.bcm.edu 37 1 197886895 197886895 + 5'UTR SNP C C T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIAS 11019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39472863 39472863 + Silent SNP T T C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIAS 11019 hgsc.bcm.edu;ucsc.edu 37 4 39469138 39469138 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIF 3976 broad.mit.edu 37 22 30642773 30642773 + 5'UTR SNP T A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIF 3976 broad.mit.edu;hgsc.bcm.edu 37 22 30639581 30639581 + 3'UTR SNP C C G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIFR 3977 broad.mit.edu;hgsc.bcm.edu 37 5 38484964 38484964 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIFR 3977 hgsc.bcm.edu;ucsc.edu 37 5 38486023 38486023 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIG1 3978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48634399 48634399 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIG3 3980 broad.mit.edu 37 17 33316728 33316728 + Intron SNP A G G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIG3 3980 hgsc.bcm.edu 37 17 33326363 33326363 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIG4 3981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 108861063 108861063 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA1 11024 broad.mit.edu 37 19 55105673 55105673 + 5'UTR SNP C T T rs28545324 bycluster;byfrequency;by1000genomes TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRA1 11024 broad.mit.edu;hgsc.bcm.edu 37 19 55110797 55110797 + Intron SNP C C T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA1 11024 hgsc.bcm.edu 37 19 55106622 55106622 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LILRA2 11027 broad.mit.edu 37 19 55086976 55086976 + Silent SNP C T T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRA2 11027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55085805 55085805 + Silent SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA2 11027 broad.mit.edu;ucsc.edu 37 19 55085835 55085835 + Silent SNP C A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRA2 11027 hgsc.bcm.edu 37 19 55085309 55085309 + 5'UTR SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA3 11026 broad.mit.edu;hgsc.bcm.edu 37 19 54803946 54803946 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA5 353514 broad.mit.edu 37 19 54818526 54818526 + 3'UTR DEL A - - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRA5 353514 hgsc.bcm.edu 37 19 54824256 54824256 + Intron SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA5 353514 hgsc.bcm.edu;ucsc.edu 37 19 54822747 54822747 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LILRA6 79168 broad.mit.edu 37 19 54742661 54742661 + 3'UTR SNP A T T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRA6 79168 broad.mit.edu 37 19 54744735 54744735 + Silent SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRA6 79168 broad.mit.edu;hgsc.bcm.edu 37 19 54744308 54744308 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA6 79168 hgsc.bcm.edu 37 19 54744772 54744772 + Missense_Mutation SNP T T G rs77717986 unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA6 79168 hgsc.bcm.edu 37 19 54744777 54744777 + Silent SNP C C T rs76127474 unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRA6 79168 hgsc.bcm.edu 37 19 54745508 54745508 + Missense_Mutation SNP G G A rs61734497 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB1 10859 broad.mit.edu 37 19 55147170 55147170 + Intron SNP C T T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB1 10859 broad.mit.edu 37 19 55147219 55147219 + Intron SNP C T T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB1 10859 broad.mit.edu 37 19 55147219 55147219 + Intron SNP C T T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB1 10859 broad.mit.edu;hgsc.bcm.edu 37 19 55142960 55142960 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB1 10859 broad.mit.edu;hgsc.bcm.edu 37 19 55143551 55143551 + Missense_Mutation SNP G G A rs112916853 byfrequency TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB1 10859 hgsc.bcm.edu 37 19 55147074 55147074 + Intron SNP C C T rs10421874 bycluster;byfrequency;by1000genomes TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LILRB3 11025 broad.mit.edu 37 19 54725530 54725531 + Intron INS - T T rs141300393 unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB3 11025 broad.mit.edu 37 19 54746128 54746128 + Missense_Mutation SNP G C C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB3 11025 broad.mit.edu;hgsc.bcm.edu 37 19 54721109 54721109 + Splice_Site SNP C C A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB3 11025 hgsc.bcm.edu 37 19 54721256 54721256 + Missense_Mutation SNP A A G rs117030367 byfrequency;by1000genomes TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB3 11025 hgsc.bcm.edu 37 19 54726241 54726241 + Missense_Mutation SNP C C T rs77279742 bycluster;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB4 11006 broad.mit.edu 37 19 55174375 55174375 + 5'UTR SNP C A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB4 11006 broad.mit.edu 37 19 55176277 55176277 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB4 11006 broad.mit.edu;hgsc.bcm.edu 37 19 55174440 55174440 + 5'UTR SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB4 11006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55177763 55177763 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB4 11006 hgsc.bcm.edu 37 19 55176302 55176302 + Splice_Site SNP T T A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LILRB4 11006 hgsc.bcm.edu 37 19 55179244 55179244 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB4 11006 hgsc.bcm.edu 37 19 55179244 55179244 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB4 11006 hgsc.bcm.edu 37 19 55179244 55179244 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB5 10990 broad.mit.edu 37 19 54754843 54754843 + Intron SNP A G G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB5 10990 broad.mit.edu 37 19 54754901 54754901 + Intron SNP T A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB5 10990 broad.mit.edu 37 19 54754989 54754989 + Intron SNP T G G rs77680604 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB5 10990 broad.mit.edu 37 19 54754990 54754990 + Intron SNP C G G rs76763913 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRB5 10990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54756788 54756788 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB5 10990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54758770 54758770 + Silent SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB5 10990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54760026 54760026 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRB5 10990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54760570 54760570 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LILRP2 79166 broad.mit.edu 37 19 55221501 55221501 + RNA SNP C G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LILRP2 79166 broad.mit.edu 37 19 55221840 55221840 + RNA SNP A G G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMA1 51474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50571222 50571222 + Silent SNP T T C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIMA1 51474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50571732 50571732 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIMA1 51474 broad.mit.edu;ucsc.edu 37 12 50616129 50616129 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMA1 51474 hgsc.bcm.edu 37 12 50589647 50589647 + Silent SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIMA1 51474 hgsc.bcm.edu 37 12 50615812 50615812 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIMA1 51474 hgsc.bcm.edu;ucsc.edu 37 12 50642463 50642463 + Silent SNP A A C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIMCH1 22998 broad.mit.edu 37 4 41699388 41699388 + 3'UTR DEL T - - rs113753743 unknown;alternate_allele TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMCH1 22998 broad.mit.edu 37 4 41699388 41699388 + 3'UTR DEL T - - rs113753743 unknown;alternate_allele TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMCH1 22998 broad.mit.edu 37 4 41699388 41699388 + 3'UTR DEL T - - rs113753743 unknown;alternate_allele TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMCH1 22998 hgsc.bcm.edu 37 4 41664844 41664844 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIMCH1 22998 hgsc.bcm.edu;ucsc.edu 37 4 41694356 41694356 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIMD1 8994 broad.mit.edu 37 3 45677639 45677639 + Intron DEL A - - rs5848762 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMD1 8994 broad.mit.edu 37 3 45677639 45677639 + Intron DEL A - - rs5848762 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMD1 8994 broad.mit.edu 37 3 45677639 45677639 + Intron DEL A - - rs5848762 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMD1 8994 broad.mit.edu 37 3 45677639 45677639 + Intron DEL A - - rs5848762 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMD1 8994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 45637344 45637344 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIME1 54923 broad.mit.edu 37 20 62370185 62370185 + Missense_Mutation SNP A G G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMK2 3985 broad.mit.edu 37 22 31674430 31674430 + 3'UTR SNP C G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMK2 3985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31664140 31664140 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIMK2 3985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31674310 31674310 + Silent SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIMK2 3985 hgsc.bcm.edu 37 22 31658681 31658681 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIMS1 3987 broad.mit.edu 37 2 109293101 109293101 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMS2 55679 broad.mit.edu 37 2 128396655 128396655 + 3'UTR SNP T C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIMS2 55679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128414990 128414990 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIN28A 79727 hgsc.bcm.edu 37 1 26742193 26742193 + Intron SNP A A C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIN28A 79727 hgsc.bcm.edu 37 1 26742193 26742193 + Intron SNP A A C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIN28A 79727 broad.mit.edu 37 1 26737960 26737960 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIN28A 79727 hgsc.bcm.edu 37 1 26742193 26742193 + Intron SNP A A C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIN28B 389421 broad.mit.edu 37 6 105526668 105526668 + 3'UTR SNP T G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIN28B 389421 broad.mit.edu;hgsc.bcm.edu 37 6 105526661 105526661 + 3'UTR SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIN54 132660 broad.mit.edu 37 4 83849233 83849233 + 3'UTR SNP T G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIN54 132660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83857207 83857207 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIN54 132660 hgsc.bcm.edu;ucsc.edu 37 4 83849392 83849392 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIN7A 8825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 81239638 81239638 + Silent SNP A A T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIN7A 8825 hgsc.bcm.edu 37 12 81239680 81239680 + Silent SNP G G C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LINGO1 84894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77906716 77906716 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LINGO1 84894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77907673 77907673 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LINGO1 84894 hgsc.bcm.edu 37 15 77907534 77907534 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LINGO2 158038 broad.mit.edu 37 9 27948759 27948759 + 3'UTR SNP G A A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LINGO2 158038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27949564 27949564 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LINGO2 158038 hgsc.bcm.edu;ucsc.edu 37 9 27948987 27948987 + Silent SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LINS 55180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101109927 101109927 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LINS 55180 hgsc.bcm.edu;ucsc.edu 37 15 101110153 101110153 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LINS 55180 hgsc.bcm.edu;ucsc.edu 37 15 101112168 101112168 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPC 3990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58834808 58834808 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPC 3990 hgsc.bcm.edu;ucsc.edu 37 15 58838059 58838059 + Silent SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIPE 3991 broad.mit.edu;hgsc.bcm.edu 37 19 42912198 42912198 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPE 3991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42907058 42907058 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPE 3991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42910438 42910438 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPE 3991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42912472 42912472 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPE 3991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42930828 42930828 + Silent SNP C C T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPF 8513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90438403 90438403 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPG 9388 hgsc.bcm.edu 37 18 47116864 47116864 + Intron SNP C C A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPG 9388 hgsc.bcm.edu;ucsc.edu 37 18 47095827 47095827 + Silent SNP C C T rs146146617 unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPI 149998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15481370 15481370 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPI 149998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15561671 15561671 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPI 149998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15579141 15579141 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPJ 142910 hgsc.bcm.edu 37 10 90356597 90356597 + Silent SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIPK 643414 broad.mit.edu;hgsc.bcm.edu 37 10 90497391 90497391 + Splice_Site SNP G G T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPN 643418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90534901 90534901 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LIPN 643418 hgsc.bcm.edu 37 10 90521220 90521220 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LIPT1 51601 broad.mit.edu 37 2 99779609 99779609 + 3'UTR SNP G T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LIX1L 128077 hgsc.bcm.edu 37 1 145497422 145497422 + Missense_Mutation SNP T T A rs189730184 by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LLGL1 3996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18135884 18135884 + Silent SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LLGL1 3996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18137246 18137246 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LLGL1 3996 broad.mit.edu;ucsc.edu 37 17 18141525 18141526 + Frame_Shift_Ins INS - A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LLGL1 3996 hgsc.bcm.edu 37 17 18136083 18136083 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LLGL2 3993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73565078 73565078 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LLGL2 3993 hgsc.bcm.edu 37 17 73569631 73569631 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMAN1 3998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57013225 57013225 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMAN1 3998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57026429 57026429 + Silent SNP C C T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMAN1L 79748 broad.mit.edu 37 15 75111763 75111763 + Intron SNP G A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMAN1L 79748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75108801 75108801 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMAN1L 79748 hgsc.bcm.edu;ucsc.edu 37 15 75115023 75115023 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMAN2 10960 broad.mit.edu 37 5 176778599 176778599 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMBR1 64327 broad.mit.edu 37 7 156476499 156476499 + 3'UTR SNP A G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMBR1 64327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156518213 156518213 + Silent SNP A A G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMBR1L 55716 broad.mit.edu 37 12 49496928 49496928 + Missense_Mutation SNP A G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMBR1L 55716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49495927 49495927 + Silent SNP A A G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMBRD1 55788 hgsc.bcm.edu;ucsc.edu 37 6 70459304 70459304 + Intron SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMBRD1 55788 hgsc.bcm.edu;ucsc.edu 37 6 70490383 70490383 + Splice_Region SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMBRD2 92255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36117868 36117868 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMBRD2 92255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36136613 36136613 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMLN 89782 broad.mit.edu 37 3 197765731 197765731 + 3'UTR DEL T - - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMLN 89782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197707203 197707203 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMLN 89782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197748373 197748373 + Silent SNP C C A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMNA 4000 broad.mit.edu;hgsc.bcm.edu 37 1 156105094 156105094 + Silent SNP C C G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMNB1 4001 broad.mit.edu 37 5 126172027 126172027 + 3'UTR SNP C G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMNB1 4001 broad.mit.edu;ucsc.edu 37 5 126158526 126158526 + Silent SNP C T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMNB1 4001 hgsc.bcm.edu;ucsc.edu 37 5 126154654 126154654 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMNB2 84823 hgsc.bcm.edu 37 19 2444467 2444467 + Silent SNP T T A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO4 8543 broad.mit.edu 37 1 87813144 87813144 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMO4 8543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87805218 87805218 + Splice_Site SNP G G C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO4 8543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87805242 87805242 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO4 8543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87805280 87805280 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO7 4008 broad.mit.edu 37 13 76431981 76431981 + Intron SNP T C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMO7 4008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 76335071 76335071 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO7 4008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 76369561 76369561 + Silent SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO7 4008 hgsc.bcm.edu 37 13 76195901 76195901 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMO7 4008 hgsc.bcm.edu;ucsc.edu 37 13 76381790 76381791 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMO7 4008 hgsc.bcm.edu;ucsc.edu 37 13 76427480 76427480 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMOD1 25802 broad.mit.edu 37 1 201869657 201869657 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMOD2 442721 broad.mit.edu 37 7 123302309 123302309 + Missense_Mutation SNP C A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMOD2 442721 broad.mit.edu 37 7 123303919 123303919 + 3'UTR SNP C A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMOD3 56203 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 69168594 69168595 + Frame_Shift_Ins INS - - T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMOD3 56203 hgsc.bcm.edu 37 3 69171497 69171499 + In_Frame_Del DEL AGA AGA - rs139192915 bycluster;by1000genomes TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMOD3 56203 hgsc.bcm.edu 37 3 69171497 69171499 + In_Frame_Del DEL AGA AGA - rs139192915 bycluster;by1000genomes TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMOD3 56203 hgsc.bcm.edu;ucsc.edu 37 3 69169051 69169056 + In_Frame_Del DEL TCTTCT TCTTCT - novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TCTTCT TCTTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LMTK2 22853 broad.mit.edu 37 7 97834847 97834847 + 3'UTR SNP G T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMTK2 22853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 97766647 97766647 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LMTK2 22853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 97822827 97822827 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LMTK3 114783 broad.mit.edu 37 19 48988934 48988934 + 3'UTR SNP C T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMTK3 114783 broad.mit.edu 37 19 48994751 48994751 + Frame_Shift_Del DEL C - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMTK3 114783 broad.mit.edu 37 19 49001136 49001136 + Frame_Shift_Del DEL A - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LMTK3 114783 hgsc.bcm.edu 37 19 49016459 49016459 + 5'Promoter SNP T T A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LMX1A 4009 hgsc.bcm.edu 37 1 165183037 165183037 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LNP1 348801 hgsc.bcm.edu 37 3 100170598 100170598 + Silent SNP C C T rs78633312 unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LNPEP 4012 broad.mit.edu 37 5 96350753 96350753 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LNPEP 4012 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96315099 96315099 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LNPEP 4012 hgsc.bcm.edu;ucsc.edu 37 5 96320855 96320855 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOC100101266 0 broad.mit.edu 37 19 24346194 24346194 + RNA SNP C T T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100124692 100124692 broad.mit.edu 37 7 141895981 141895982 + RNA INS - G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100125556 0 broad.mit.edu 37 3 125647387 125647387 + RNA SNP G A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100125556 0 broad.mit.edu 37 3 125647396 125647396 + RNA SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100128788 0 broad.mit.edu 37 16 2787095 2787095 + RNA DEL T - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100128842 0 broad.mit.edu 37 1 1195951 1195952 + 3'UTR DEL CA - - rs140487070 by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100129550 100129550 broad.mit.edu 37 3 122608187 122608187 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132247 100132247 broad.mit.edu 37 16 22503208 22503208 + Intron SNP A T T rs71221548 unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132288 0 broad.mit.edu 37 21 9907198 9907198 + 3'UTR SNP C T T rs71263208 unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132288 0 broad.mit.edu 37 21 9907198 9907198 + 3'UTR SNP C T T rs71263208 unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132288 0 broad.mit.edu 37 21 9907346 9907346 + 3'UTR SNP G A A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132288 0 broad.mit.edu 37 21 9907480 9907480 + 3'UTR SNP G T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132354 100132354 broad.mit.edu 37 6 43858933 43858934 + RNA INS - TC TC rs77608736 bycluster;by1000genomes TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100132832 100132832 broad.mit.edu 37 7 76681226 76681226 + RNA SNP G C C rs76001678 unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133308 0 broad.mit.edu 37 10 45602513 45602513 + RNA SNP T C C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133308 0 broad.mit.edu 37 10 45644312 45644312 + Intron SNP A C C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133308 0 broad.mit.edu 37 10 45652235 45652235 + 5'Flank SNP C G G rs149362183 unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133308 0 broad.mit.edu 37 10 45652504 45652504 + 5'Flank SNP T G G rs3842995 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100133893 0 broad.mit.edu;ucsc.edu 37 12 27916081 27916081 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100134368 100134368 broad.mit.edu 37 16 436725 436725 + Intron SNP C A A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100286793 100286793 broad.mit.edu 37 1 143663875 143663875 + RNA SNP G T T rs487704 by2hit2allele TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100287718 0 broad.mit.edu;ucsc.edu 37 6 46721623 46721623 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100288778 100288778 broad.mit.edu 37 12 88237 88237 + Intron DEL C - - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100288778 100288778 broad.mit.edu 37 12 88906 88906 + Silent SNP A T T rs17854554 unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100288778 100288778 broad.mit.edu 37 12 88906 88906 + Silent SNP A T T rs17854554 unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100288778 100288778 broad.mit.edu 37 12 88906 88906 + Silent SNP A T T rs17854554 unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100288778 100288778 broad.mit.edu 37 12 90953 90953 + 3'UTR SNP C G G rs1062957 unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC100506776 100506776 hgsc.bcm.edu;ucsc.edu 37 7 38402537 38402537 + RNA SNP G G T rs2392564 unknown;alternate_allele TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOC116437 116437 broad.mit.edu 37 12 131696762 131696762 + RNA DEL G - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC144438 0 broad.mit.edu 37 12 49082927 49082927 + RNA DEL T - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC146481 146481 broad.mit.edu 37 16 34713678 34713678 + Intron SNP T C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC146880 146880 broad.mit.edu 37 17 62750126 62750126 + RNA SNP A G G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC149620 0 broad.mit.edu 37 1 111824291 111824291 + RNA SNP T G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC150568 150568 broad.mit.edu 37 2 105128744 105128744 + RNA DEL A - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC152024 0 broad.mit.edu 37 3 24138195 24138196 + RNA INS - T T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC152024 0 broad.mit.edu 37 3 24138196 24138196 + RNA DEL T - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC152024 0 broad.mit.edu 37 3 24138699 24138699 + RNA DEL A - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC168474 0 broad.mit.edu 37 7 64313515 64313515 + Silent SNP A G G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC200030 0 broad.mit.edu 37 1 148017563 148017563 + Silent SNP A G G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC200030 0 broad.mit.edu 37 1 148251814 148251814 + Intron SNP T A A rs711765 unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC200030 0 broad.mit.edu 37 1 148346783 148346783 + 5'UTR SNP A G G rs9442114 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC200030 0 broad.mit.edu 37 1 148346785 148346785 + 5'UTR SNP T C C rs78990505 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC201651 201651 broad.mit.edu 37 3 151502565 151502566 + RNA INS - AG AG rs10680776 bycluster;by1000genomes TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC202181 202181 broad.mit.edu 37 5 177059003 177059003 + Intron SNP G T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC219347 0 broad.mit.edu 37 10 81808001 81808001 + RNA DEL T - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC220429 0 broad.mit.edu 37 13 50466749 50466749 + Missense_Mutation SNP C G G rs57976037 bycluster;byfrequency;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC220429 0 broad.mit.edu 37 13 50466815 50466815 + Missense_Mutation SNP C T T rs56215346 byfrequency;by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC220729 220729 broad.mit.edu 37 3 197348668 197348668 + RNA SNP C G G rs79940815 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC220729 220729 broad.mit.edu 37 3 197348674 197348674 + RNA SNP A G G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC222699 0 broad.mit.edu 37 6 28185356 28185356 + RNA DEL G - - rs10694454 unknown;alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC222699 0 broad.mit.edu 37 6 28185441 28185441 + RNA SNP A G G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC253724 0 broad.mit.edu 37 12 104308157 104308157 + 3'UTR DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283761 283761 broad.mit.edu 37 15 90048926 90048927 + RNA INS - C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283922 283922 broad.mit.edu 37 16 74366481 74366481 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283922 283922 broad.mit.edu 37 16 74372644 74372644 + Silent SNP A G G rs2549260 bycluster TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283922 283922 broad.mit.edu 37 16 74372644 74372644 + Silent SNP A G G rs2549260 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283922 283922 broad.mit.edu 37 16 74372753 74372753 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283922 283922 broad.mit.edu 37 16 74394745 74394745 + 5'UTR SNP A G G rs80352939 unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC283922 283922 broad.mit.edu 37 16 74394745 74394745 + 5'UTR SNP A G G rs80352939 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284100 284100 broad.mit.edu 37 17 36214775 36214775 + RNA SNP G T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19409453 19409453 + RNA SNP T C C rs138555198 by1000genomes TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19411895 19411895 + RNA SNP A G G rs7334605 bycluster;by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19412668 19412668 + RNA SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19413025 19413025 + RNA SNP A G G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19413033 19413033 + RNA SNP G A A rs78610290 unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19414102 19414102 + RNA SNP C T T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19414102 19414102 + RNA SNP C T T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19414116 19414116 + RNA SNP C T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19414287 19414287 + RNA SNP G T T rs4037774 bycluster;byfrequency;by1000genomes TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19415641 19415641 + RNA SNP A T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19415641 19415641 + RNA SNP A T T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19415644 19415644 + RNA SNP C A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19419613 19419613 + RNA SNP G C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19419620 19419620 + RNA SNP A T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19420016 19420016 + RNA SNP C G G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19420047 19420053 + RNA DEL TTCGTAT - - rs78241386 unknown;alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 TTCGTAT TTCGTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19432891 19432891 + RNA SNP C A A rs1937748 by2hit2allele;by1000genomes TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19433013 19433013 + RNA SNP G A A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19435836 19435836 + RNA SNP A C C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19442373 19442373 + RNA SNP G A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284232 0 broad.mit.edu 37 13 19445972 19445972 + RNA SNP C A A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC284837 284837 broad.mit.edu 37 21 45225896 45225896 + RNA DEL T - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC285074 285074 broad.mit.edu 37 2 87261325 87261325 + Missense_Mutation SNP T C C rs3187359 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC285359 0 broad.mit.edu 37 3 101431291 101431291 + RNA SNP C T T novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC285359 0 broad.mit.edu 37 3 101432120 101432120 + RNA SNP C G G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC285501 285501 broad.mit.edu 37 4 178911782 178911782 + RNA SNP A G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC286238 286238 broad.mit.edu;ucsc.edu 37 9 91262512 91262512 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC340094 340094 broad.mit.edu 37 5 5057795 5057795 + RNA DEL T - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC341056 341056 broad.mit.edu 37 11 122888720 122888720 + RNA SNP C T T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC342346 0 broad.mit.edu;ucsc.edu 37 16 4606857 4606857 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC344595 344595 broad.mit.edu 37 3 106968825 106968825 + Intron DEL T - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC344967 344967 broad.mit.edu 37 4 40045118 40045118 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC347376 0 broad.mit.edu 37 X 50648543 50648543 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC347376 0 broad.mit.edu 37 X 50648692 50648692 + Silent SNP C T T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC347376 0 broad.mit.edu 37 X 50648823 50648823 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC374491 0 broad.mit.edu 37 13 25161438 25161438 + RNA SNP T A A rs3869320 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC374491 0 broad.mit.edu 37 13 25161456 25161456 + RNA SNP C T T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC374491 0 broad.mit.edu 37 13 25168432 25168432 + RNA SNP T C C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC387646 0 broad.mit.edu 37 10 27536000 27536000 + 3'UTR SNP G T T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC387646 0 broad.mit.edu 37 10 27537037 27537042 + 3'UTR DEL TAACTT - - rs145787873 bycluster;by1000genomes;alternate_allele TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 TAACTT TAACTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC387646 0 broad.mit.edu 37 10 27538014 27538014 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC387646 0 broad.mit.edu 37 10 27539928 27539928 + 5'UTR SNP A G G rs604705 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC387646 0 broad.mit.edu;ucsc.edu 37 10 27538399 27538399 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC388692 388692 broad.mit.edu 37 1 149280301 149280302 + RNA INS - A A rs11386501 bycluster;byfrequency TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC388692 388692 broad.mit.edu 37 1 149280301 149280302 + RNA INS - A A rs11386501 bycluster;byfrequency TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC388692 388692 broad.mit.edu 37 1 149281361 149281362 + RNA INS - T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC388692 388692 broad.mit.edu 37 1 149287048 149287049 + RNA INS - A A rs78792181 bycluster;by1000genomes TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC389333 0 broad.mit.edu 37 5 138728573 138728574 + Frame_Shift_Del DEL AT - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC389333 0 broad.mit.edu 37 5 138728579 138728579 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC389333 0 broad.mit.edu 37 5 138728583 138728584 + Frame_Shift_Ins INS - T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC390595 0 broad.mit.edu;ucsc.edu 37 15 65386873 65386873 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC391322 391322 broad.mit.edu;ucsc.edu 37 22 24373819 24373819 + Silent SNP T C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC400759 0 broad.mit.edu 37 1 89875916 89875916 + RNA SNP C T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC400759 0 broad.mit.edu 37 1 89889894 89889894 + RNA SNP A C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC400759 0 broad.mit.edu 37 1 89890132 89890132 + RNA SNP G A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC401010 401010 broad.mit.edu 37 2 132201085 132201085 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC401010 401010 broad.mit.edu 37 2 132201889 132201889 + Missense_Mutation SNP C A A rs2007096 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC401010 401010 broad.mit.edu 37 2 132202007 132202007 + 5'UTR SNP G C C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC401127 401127 broad.mit.edu 37 4 39482474 39482474 + RNA SNP A C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC401127 401127 broad.mit.edu 37 4 39482624 39482624 + RNA SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC402644 402644 broad.mit.edu 37 7 28319099 28319099 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC407835 407835 broad.mit.edu 37 7 128767412 128767412 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440040 440040 broad.mit.edu 37 11 49830092 49830092 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440354 440354 broad.mit.edu 37 16 29538827 29538827 + Intron SNP A T T rs79882560 unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440354 440354 broad.mit.edu 37 16 30278810 30278811 + RNA INS - A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440354 440354 broad.mit.edu 37 16 30278845 30278845 + RNA DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440354 440354 broad.mit.edu 37 16 30278845 30278845 + RNA DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440563 440563 broad.mit.edu 37 1 13183480 13183480 + Silent SNP A G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440563 440563 broad.mit.edu 37 1 13183615 13183615 + Silent SNP T C C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440896 440896 broad.mit.edu 37 9 69192740 69192740 + RNA SNP A G G rs62551649 bycluster TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440905 440905 broad.mit.edu 37 2 130785949 130785949 + RNA SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440905 440905 broad.mit.edu 37 2 130786055 130786055 + RNA SNP A T T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC440905 440905 broad.mit.edu 37 2 130786063 130786063 + Intron SNP G A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441089 0 broad.mit.edu 37 5 79646840 79646840 + RNA DEL T - - rs150619956 bycluster;by1000genomes TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441089 0 broad.mit.edu 37 5 79646840 79646840 + RNA DEL T - - rs150619956 bycluster;by1000genomes TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832015 42832015 + RNA SNP A C C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832122 42832122 + RNA SNP C T T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832122 42832122 + RNA SNP C T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832122 42832122 + RNA SNP C T T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832147 42832147 + RNA SNP G T T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832426 42832426 + RNA SNP T C C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42832499 42832499 + RNA SNP C G G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42833086 42833087 + RNA DEL TA - - rs142580076 by1000genomes TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42833142 42833142 + RNA SNP A T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42833154 42833154 + RNA SNP T C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42833154 42833154 + RNA SNP T C C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42833429 42833429 + RNA SNP A G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC441666 441666 broad.mit.edu 37 10 42833429 42833429 + RNA SNP A G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442308 442308 broad.mit.edu 37 7 55714466 55714466 + RNA SNP C T T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499680 66499680 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499716 66499716 + Missense_Mutation SNP A G G rs62549179 unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499764 66499764 + Silent SNP C T T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499770 66499770 + Missense_Mutation SNP G T T rs7850185 bycluster;by2hit2allele TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499795 66499795 + Missense_Mutation SNP G A A rs28526589 unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499823 66499824 + Frame_Shift_Ins INS - TC TC novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499867 66499867 + Missense_Mutation SNP T C C rs7862419 bycluster;byfrequency;by2hit2allele TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499888 66499888 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66499904 66499904 + Silent SNP C T T rs76668373 byfrequency TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66500794 66500794 + RNA SNP T C C rs7866420 bycluster;by2hit2allele TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66500808 66500808 + RNA SNP T G G rs62562158 unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66500810 66500810 + RNA SNP G A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66500841 66500841 + RNA SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66502883 66502884 + RNA DEL AT - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66502885 66502885 + RNA DEL A - - rs72184572 unknown;alternate_allele TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC442421 0 broad.mit.edu 37 9 66502886 66502886 + RNA DEL T - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC493754 493754 broad.mit.edu 37 7 66019362 66019363 + Intron INS - C C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC493754 493754 broad.mit.edu 37 7 66019363 66019364 + Intron INS - C C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC494141 494141 broad.mit.edu 37 11 18231485 18231485 + RNA SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC494141 494141 broad.mit.edu 37 11 18231982 18231982 + RNA SNP G A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC554202 0 broad.mit.edu 37 9 21455929 21455929 + RNA SNP G T T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC642587 0 broad.mit.edu 37 1 209605623 209605623 + Missense_Mutation SNP G A A rs12407854 byhapmap TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC642597 0 broad.mit.edu 37 18 5197060 5197060 + 5'UTR SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC642826 0 broad.mit.edu 37 10 47207813 47207813 + RNA SNP T C C rs79933604 unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC642846 642846 broad.mit.edu 37 12 9453702 9453702 + RNA SNP C T T rs71447578 unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC642846 642846 broad.mit.edu 37 12 9458891 9458891 + RNA SNP A G G rs2911828 bycluster TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643387 643387 broad.mit.edu 37 2 239140426 239140427 + 5'UTR INS - C C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643387 643387 broad.mit.edu 37 2 239140426 239140427 + 5'UTR INS - C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643387 643387 broad.mit.edu 37 2 239141375 239141375 + 3'UTR SNP G A A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643486 643486 broad.mit.edu 37 X 95592534 95592534 + RNA SNP C T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643955 0 broad.mit.edu 37 7 62752443 62752443 + 3'UTR SNP G C C rs685206 bycluster TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643955 0 broad.mit.edu 37 7 62752443 62752443 + 3'UTR SNP G C C rs685206 bycluster TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643955 0 broad.mit.edu 37 7 62752443 62752443 + 3'UTR SNP G C C rs685206 bycluster TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643955 0 broad.mit.edu 37 7 62752443 62752443 + 3'UTR SNP G C C rs685206 bycluster TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC643955 0 broad.mit.edu 37 7 62752706 62752706 + 3'UTR SNP G A A rs71275256 unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC644165 0 broad.mit.edu 37 22 25043061 25043062 + Intron INS - CCGG CCGG novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC644669 644669 broad.mit.edu 37 18 15323276 15323276 + RNA SNP A T T rs71354236 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC644669 644669 broad.mit.edu 37 18 15323316 15323316 + RNA SNP G C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC644669 644669 broad.mit.edu 37 18 15325675 15325675 + RNA SNP C A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC644669 644669 broad.mit.edu 37 18 15325895 15325895 + RNA SNP C A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645166 645166 broad.mit.edu 37 1 148933289 148933289 + Splice_Site SNP A G G rs9729175 bycluster;by2hit2allele TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645323 0 broad.mit.edu 37 5 87980582 87980583 + RNA DEL TC - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645332 0 broad.mit.edu 37 11 67560337 67560337 + 3'UTR SNP G A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645332 0 broad.mit.edu 37 11 67560384 67560384 + 3'UTR SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645332 0 broad.mit.edu 37 11 67560590 67560590 + 3'UTR SNP C T T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645332 0 broad.mit.edu 37 11 67560590 67560590 + 3'UTR SNP C T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645332 0 broad.mit.edu 37 11 67560717 67560717 + Silent SNP G A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645752 645752 broad.mit.edu 37 15 78207569 78207569 + Missense_Mutation SNP G A A rs56314252 byfrequency;by1000genomes TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645752 645752 broad.mit.edu 37 15 78207580 78207580 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645752 645752 broad.mit.edu 37 15 78208239 78208239 + Silent SNP T C C rs74587726 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC645752 645752 broad.mit.edu 37 15 78208251 78208251 + Silent SNP C T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646214 646214 broad.mit.edu 37 15 21934828 21934828 + RNA DEL G - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646214 646214 broad.mit.edu 37 15 21934898 21934899 + RNA INS - C C rs60809088 unknown;alternate_allele TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646214 646214 broad.mit.edu 37 15 21935217 21935221 + RNA DEL AAAAC - - rs138804430 by1000genomes TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 AAAAC AAAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646214 646214 broad.mit.edu 37 15 21936308 21936308 + RNA SNP G T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646214 646214 broad.mit.edu 37 15 21936872 21936872 + RNA SNP G A A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646214 646214 broad.mit.edu 37 15 21940266 21940267 + RNA INS - A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC646813 646813 broad.mit.edu 37 11 50379673 50379673 + RNA SNP C T T rs117065335 byfrequency;by1000genomes TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC647121 0 broad.mit.edu 37 1 121298440 121298440 + RNA SNP T C C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC647121 0 broad.mit.edu 37 1 121306707 121306707 + Silent SNP C T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC647288 0 broad.mit.edu 37 13 75812076 75812076 + 3'UTR SNP C T T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC647288 0 broad.mit.edu 37 13 75813748 75813749 + 3'UTR INS - T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC648740 0 broad.mit.edu 37 1 104114048 104114048 + 5'UTR SNP A G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650293 650293 broad.mit.edu 37 4 8951518 8951518 + Silent SNP G T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427759 3427759 + RNA SNP C T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427885 3427885 + RNA SNP A G G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650368 650368 broad.mit.edu 37 11 3427885 3427885 + RNA SNP A G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650623 0 broad.mit.edu 37 10 81444807 81444807 + RNA DEL G - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC650623 0 broad.mit.edu 37 10 81444997 81444997 + RNA SNP T C C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC651250 0 broad.mit.edu 37 17 66123801 66123801 + RNA SNP C A A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC651250 0 broad.mit.edu 37 17 66123962 66123962 + RNA SNP C T T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC653113 0 broad.mit.edu 37 12 8384525 8384525 + RNA SNP G T T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC653786 653786 broad.mit.edu 37 16 22563729 22563729 + 5'UTR SNP G C C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC653786 653786 broad.mit.edu 37 16 22588020 22588020 + 3'UTR SNP G A A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC654342 654342 broad.mit.edu 37 2 91809094 91809094 + Intron SNP G A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC654342 654342 broad.mit.edu 37 2 91843471 91843471 + RNA SNP C T T rs113954000 unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC727896 727896 broad.mit.edu 37 18 2945478 2945478 + 3'UTR SNP C A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728024 728024 broad.mit.edu 37 8 37604944 37604944 + Silent SNP G A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728264 0 broad.mit.edu 37 5 148804230 148804231 + RNA DEL CT - - rs137913465 bycluster;by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728323 728323 broad.mit.edu 37 2 243056808 243056808 + RNA SNP T A A rs62192205 unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728323 728323 broad.mit.edu 37 2 243056818 243056818 + RNA SNP C T T rs62192206 unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728392 728392 broad.mit.edu 37 17 5402935 5402935 + 3'UTR DEL T - - rs145486237 bycluster;by1000genomes TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728855 0 broad.mit.edu 37 1 149648476 149648476 + Intron SNP G A A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728989 728989 broad.mit.edu 37 1 146493351 146493351 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC728989 728989 broad.mit.edu 37 1 146494537 146494537 + Silent SNP C T T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC732275 732275 broad.mit.edu 37 16 86371988 86371988 + 5'Flank DEL C - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC81691 81691 broad.mit.edu;ucsc.edu 37 16 20824600 20824600 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC81691 81691 broad.mit.edu;ucsc.edu 37 16 20851655 20851655 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC90586 0 broad.mit.edu 37 17 41020052 41020052 + 3'UTR SNP C T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC91316 0 broad.mit.edu 37 22 23980988 23980988 + RNA SNP G A A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC91316 0 broad.mit.edu 37 22 24056489 24056489 + Intron SNP A G G novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22661517 22661517 + RNA SNP G A A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22661517 22661517 + RNA SNP G A A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22661721 22661721 + Intron SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22661756 22661756 + Intron SNP T G G rs17841937 unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22661762 22661762 + Intron SNP C G G rs191838635 unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22662971 22662971 + Intron SNP A G G rs4043412 unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22662995 22662995 + Intron SNP C T T rs79792109 unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22663086 22663086 + RNA SNP T G G rs71318762 unknown;alternate_allele TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22663086 22663086 + RNA SNP T G G rs71318762 unknown;alternate_allele TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22663087 22663087 + RNA SNP A G G rs1054158 bycluster;byhapmap;by1000genomes TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22664115 22664115 + RNA SNP A T T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22664606 22664606 + RNA SNP A G G rs187344612 unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22664721 22664721 + RNA SNP T C C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22677327 22677327 + Splice_Site SNP A G G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22724315 22724315 + RNA SNP G C C novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22975975 22975975 + Intron SNP A G G rs1631817 byfrequency TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 22977554 22977554 + Intron SNP G C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 23006960 23006960 + RNA SNP C A A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 23006960 23006960 + RNA SNP C A A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 23006960 23006960 + RNA SNP C A A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 23006961 23006961 + RNA SNP C T T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 23006961 23006961 + RNA SNP C T T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOC96610 96610 broad.mit.edu 37 22 23006961 23006961 + RNA SNP C T T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOH12CR1 118426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 12618552 12618552 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LONP1 9361 broad.mit.edu;hgsc.bcm.edu 37 19 5699170 5699170 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LONP1 9361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5699087 5699087 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LONP1 9361 hgsc.bcm.edu 37 19 5693589 5693589 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LONP2 83752 hgsc.bcm.edu;ucsc.edu 37 16 48286144 48286144 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LONP2 83752 hgsc.bcm.edu;ucsc.edu 37 16 48311325 48311325 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LONP2 83752 hgsc.bcm.edu;ucsc.edu 37 16 48385510 48385510 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LONRF1 91694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 12586770 12586770 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LONRF1 91694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 12592860 12592860 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LONRF2 164832 hgsc.bcm.edu 37 2 100903525 100903525 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LONRF2 164832 hgsc.bcm.edu;ucsc.edu 37 2 100906805 100906805 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LONRF3 79836 broad.mit.edu;hgsc.bcm.edu 37 X 118108850 118108850 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LONRF3 79836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118140161 118140161 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOR 4014 hgsc.bcm.edu 37 1 153233488 153233489 + In_Frame_Ins INS - - GGCGGT novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOX 4015 hgsc.bcm.edu;ucsc.edu 37 5 121411209 121411209 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44069072 44069072 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44114312 44114312 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44122812 44122812 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44137417 44137417 + Silent SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXHD1 125336 broad.mit.edu;ucsc.edu 37 18 44098173 44098173 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOXHD1 125336 hgsc.bcm.edu 37 18 44104452 44104452 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOXHD1 125336 hgsc.bcm.edu 37 18 44104808 44104808 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOXHD1 125336 hgsc.bcm.edu;ucsc.edu 37 18 44102102 44102102 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOXHD1 125336 hgsc.bcm.edu;ucsc.edu 37 18 44181243 44181243 + Intron SNP G G A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOXL1 4016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 74239485 74239485 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL1 4016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 74239564 74239564 + Silent SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL2 4017 broad.mit.edu;hgsc.bcm.edu 37 8 23167334 23167334 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL2 4017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 23217701 23217701 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL3 84695 broad.mit.edu 37 2 74760680 74760680 + 3'UTR SNP C G G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LOXL3 84695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74763177 74763177 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL3 84695 hgsc.bcm.edu;ucsc.edu 37 2 74763244 74763244 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LOXL4 84171 broad.mit.edu;hgsc.bcm.edu 37 10 100022771 100022771 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL4 84171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100015482 100015482 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LOXL4 84171 hgsc.bcm.edu;ucsc.edu 37 10 100018882 100018882 + Missense_Mutation SNP G G C rs151150208 unknown;alternate_allele TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPA 4018 broad.mit.edu 37 6 161032706 161032706 + Nonsense_Mutation SNP C A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPA 4018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160969596 160969596 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPA 4018 hgsc.bcm.edu 37 6 161027525 161027525 + Silent SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPAL2 80350 broad.mit.edu;ucsc.edu 37 6 160908435 160908435 + RNA SNP G A A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPAL2 80350 hgsc.bcm.edu;ucsc.edu 37 6 160908425 160908425 + 3'UTR SNP C C T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPAR3 23566 broad.mit.edu 37 1 85279467 85279467 + 3'UTR SNP T C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPAR4 2846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78011131 78011131 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPAR4 2846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78011222 78011222 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPCAT1 79888 broad.mit.edu 37 5 1461878 1461878 + 3'UTR DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPCAT2 54947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55565881 55565881 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPCAT3 10162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7086391 7086391 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPCAT3 10162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7087581 7087581 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPCAT3 10162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7090783 7090783 + Silent SNP A A C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPCAT3 10162 hgsc.bcm.edu;ucsc.edu 37 12 7090193 7090193 + Missense_Mutation SNP A A C rs1984564 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPCAT4 254531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34651395 34651395 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN1 22859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14268697 14268697 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN2 23266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 82372717 82372717 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN2 23266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 82408996 82408996 + Silent SNP T T C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN2 23266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 82456186 82456186 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN3 23284 broad.mit.edu 37 4 62362891 62362891 + 5'UTR SNP T C C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPHN3 23284 broad.mit.edu 37 4 62936764 62936764 + 3'UTR DEL T - - rs113701278 unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPHN3 23284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 62800598 62800598 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN3 23284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 62812747 62812747 + Silent SNP C C T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LPHN3 23284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 62813877 62813877 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LPHN3 23284 hgsc.bcm.edu 37 4 62936198 62936198 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPHN3 23284 hgsc.bcm.edu;ucsc.edu 37 4 62801740 62801740 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID LPHN3 23284 hgsc.bcm.edu;ucsc.edu 37 4 62849248 62849248 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID LPHN3 23284 hgsc.bcm.edu;ucsc.edu 37 4 62935947 62935947 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID LPHN3 23284 hgsc.bcm.edu;ucsc.edu 37 4 62936168 62936168 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPIN1 23175 broad.mit.edu;hgsc.bcm.edu 37 2 11911528 11911528 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPIN1 23175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11911638 11911638 + Missense_Mutation SNP C C A rs145629147 byfrequency;alternate_allele TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPIN1 23175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11919652 11919652 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPIN1 23175 hgsc.bcm.edu;ucsc.edu 37 2 11932122 11932122 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPIN3 64900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39987126 39987126 + Silent SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPIN3 64900 broad.mit.edu;ucsc.edu 37 20 39984632 39984632 + Silent SNP T C C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPL 4023 hgsc.bcm.edu;ucsc.edu 37 8 19819627 19819627 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPP 4026 broad.mit.edu 37 3 187896827 187896828 + Intron DEL AG - - rs71843736 bycluster;by1000genomes TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPP 4026 broad.mit.edu 37 3 188426268 188426268 + Intron SNP G A A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPP 4026 broad.mit.edu;hgsc.bcm.edu 37 3 188426055 188426055 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPP 4026 broad.mit.edu;ucsc.edu 37 3 187897064 187897064 + Intron SNP G T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPPR1 54886 hgsc.bcm.edu;ucsc.edu 37 9 104048510 104048510 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPPR1 54886 broad.mit.edu 37 9 104086507 104086507 + 3'UTR DEL T - - rs10560929 unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LPPR2 64748 hgsc.bcm.edu 37 19 11473235 11473235 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPPR3 79948 hgsc.bcm.edu 37 19 821530 821530 + Silent SNP G G A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LPPR4 9890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 99771417 99771417 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPPR4 9890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 99771434 99771434 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LPPR4 9890 broad.mit.edu;ucsc.edu 37 1 99767414 99767414 + Silent SNP T C C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRBA 987 broad.mit.edu 37 4 151604748 151604748 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRBA 987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 151511868 151511868 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRBA 987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 151511932 151511932 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRBA 987 hgsc.bcm.edu 37 4 151358010 151358010 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRBA 987 hgsc.bcm.edu;ucsc.edu 37 4 151729464 151729464 + Intron SNP T T A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRCH1 23143 broad.mit.edu 37 13 47279738 47279739 + Intron INS - C C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRCH1 23143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 47279205 47279205 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRCH1 23143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 47303069 47303069 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRCH1 23143 hgsc.bcm.edu;ucsc.edu 37 13 47279242 47279242 + Silent SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRCH2 57631 broad.mit.edu 37 X 114400841 114400841 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRCH2 57631 broad.mit.edu;hgsc.bcm.edu 37 X 114398272 114398272 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRCH2 57631 hgsc.bcm.edu 37 X 114357118 114357118 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRCH2 57631 hgsc.bcm.edu 37 X 114357118 114357118 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRCH2 57631 hgsc.bcm.edu 37 X 114357120 114357120 + Silent SNP A A T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRCH3 84859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197557694 197557694 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRDD 0 broad.mit.edu;hgsc.bcm.edu 37 11 803579 803579 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRFN1 57622 broad.mit.edu 37 19 39805558 39805558 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRFN2 57497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 40400076 40400076 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRFN2 57497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 40400231 40400231 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRFN3 79414 broad.mit.edu 37 19 36435683 36435683 + Nonsense_Mutation SNP C A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRFN3 79414 broad.mit.edu;hgsc.bcm.edu 37 19 36430547 36430547 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRFN5 145581 broad.mit.edu 37 14 42356893 42356893 + Missense_Mutation SNP T A A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRFN5 145581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 42356025 42356025 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRFN5 145581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 42360818 42360818 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRFN5 145581 hgsc.bcm.edu;ucsc.edu 37 14 42356392 42356392 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRGUK 136332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 133812165 133812165 + Silent SNP T T C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRGUK 136332 hgsc.bcm.edu;ucsc.edu 37 7 133848194 133848198 + Frame_Shift_Del DEL GCCCT GCCCT - novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 GCCCT GCCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG1 26018 broad.mit.edu 37 3 66436782 66436782 + Intron SNP G T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIG1 26018 broad.mit.edu 37 3 66436782 66436782 + Intron SNP G T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIG1 26018 broad.mit.edu 37 3 66436782 66436782 + Intron SNP G T T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIG1 26018 broad.mit.edu 37 3 66436782 66436782 + Intron SNP G T T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIG1 26018 broad.mit.edu 37 3 66436782 66436782 + Intron SNP G T T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIG1 26018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 66502055 66502055 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG1 26018 hgsc.bcm.edu 37 3 66444578 66444579 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG1 26018 hgsc.bcm.edu;ucsc.edu 37 3 66463415 66463415 + Missense_Mutation SNP C C T rs142754753 unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRIG2 9860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113616152 113616152 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG2 9860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113633959 113633959 + Silent SNP T T C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG2 9860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113635893 113635893 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG2 9860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113657274 113657274 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG2 9860 hgsc.bcm.edu;ucsc.edu 37 1 113652931 113652931 + Silent SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRIG3 121227 broad.mit.edu 37 12 59266250 59266250 + 3'UTR SNP T A A rs11172787 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIG3 121227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 59268041 59268041 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG3 121227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 59276667 59276667 + Silent SNP T T C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIG3 121227 hgsc.bcm.edu;ucsc.edu 37 12 59271294 59271294 + Silent SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRIG3 121227 hgsc.bcm.edu;ucsc.edu 37 12 59280606 59280606 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRIG3 121227 hgsc.bcm.edu;ucsc.edu 37 12 59313201 59313201 + Splice_Region SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRIT1 26103 broad.mit.edu 37 10 85991413 85991413 + 3'UTR DEL C - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIT1 26103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 85991773 85991773 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRIT1 26103 hgsc.bcm.edu 37 10 85992243 85992243 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRIT2 340745 broad.mit.edu 37 10 85982281 85982281 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIT3 345193 broad.mit.edu 37 4 110792127 110792127 + 3'UTR DEL T - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRIT3 345193 hgsc.bcm.edu 37 4 110791088 110791090 + In_Frame_Del DEL TCT TCT - rs147608421 by1000genomes TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRMP 4033 broad.mit.edu;hgsc.bcm.edu 37 12 25232580 25232580 + Intron SNP C C G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRMP 4033 hgsc.bcm.edu 37 12 25256754 25256754 + Intron SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRMP 4033 hgsc.bcm.edu 37 12 25256754 25256754 + Intron SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRMP 4033 hgsc.bcm.edu;ucsc.edu 37 12 25232386 25232386 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP10 26020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23344975 23344975 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150164137 150164137 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150164138 150164138 + Silent SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150174138 150174138 + Splice_Site SNP C C A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150174142 150174142 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP12 29967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 105503616 105503616 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP12 29967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 105507335 105507335 + Silent SNP A A T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP12 29967 hgsc.bcm.edu;ucsc.edu 37 8 105503470 105503470 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP12 29967 hgsc.bcm.edu;ucsc.edu 37 8 105503566 105503566 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP12 29967 hgsc.bcm.edu;ucsc.edu 37 8 105544140 105544140 + Nonsense_Mutation SNP G G C novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP1 4035 broad.mit.edu;hgsc.bcm.edu 37 12 57577934 57577934 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu 37 12 57588207 57588207 + Silent SNP C C A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu 37 12 57588284 57588284 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57548478 57548478 + Silent SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57554852 57554852 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57589705 57589705 + Missense_Mutation SNP C C A rs148336699 unknown;alternate_allele TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57590881 57590881 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57591375 57591375 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57600464 57600464 + Silent SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1 4035 hgsc.bcm.edu;ucsc.edu 37 12 57548278 57548278 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID LRP1 4035 hgsc.bcm.edu;ucsc.edu 37 12 57550598 57550598 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1 4035 hgsc.bcm.edu;ucsc.edu 37 12 57560827 57560833 + Frame_Shift_Del DEL GTGGTAA GTGGTAA - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 GTGGTAA GTGGTAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1 4035 hgsc.bcm.edu;ucsc.edu 37 12 57570892 57570892 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP1B 53353 broad.mit.edu 37 2 142888338 142888338 + 5'UTR SNP C A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141032077 141032077 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141116420 141116420 + Missense_Mutation SNP C C T rs150879175 bycluster;byfrequency;by1000genomes TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141122269 141122269 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141128833 141128833 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141135789 141135789 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141143576 141143576 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141643767 141643767 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141773379 141773379 + Silent SNP T T G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141777522 141777522 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141806678 141806678 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141812722 141812722 + Silent SNP A A T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 142238027 142238027 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP1B 53353 hgsc.bcm.edu 37 2 141259355 141259355 + Silent SNP G G A rs148504930 unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID LRP1B 53353 hgsc.bcm.edu 37 2 141571374 141571374 + Silent SNP A A G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP1B 53353 hgsc.bcm.edu 37 2 141665553 141665553 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP1B 53353 hgsc.bcm.edu;ucsc.edu 37 2 141812795 141812796 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP2 4036 broad.mit.edu 37 2 170136059 170136059 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx LRP2 4036 broad.mit.edu;hgsc.bcm.edu 37 2 170177379 170177379 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 169995117 169995117 + Silent SNP A A C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170011038 170011038 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170026249 170026249 + Silent SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170027130 170027130 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170028541 170028541 + Silent SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170060531 170060531 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170081963 170081963 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170103247 170103247 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170163814 170163814 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID LRP2 4036 hgsc.bcm.edu 37 2 169989163 169989163 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP2 4036 hgsc.bcm.edu;ucsc.edu 37 2 169989165 169989165 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP2 4036 hgsc.bcm.edu;ucsc.edu 37 2 170003359 170003359 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID LRP2 4036 hgsc.bcm.edu;ucsc.edu 37 2 170027076 170027076 + Missense_Mutation SNP C C A rs71430659 unknown;alternate_allele TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID LRP2 4036 hgsc.bcm.edu;ucsc.edu 37 2 170029718 170029718 + Silent SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP2 4036 hgsc.bcm.edu;ucsc.edu 37 2 170115607 170115607 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID LRP4 4038 broad.mit.edu 37 11 46880363 46880363 + 3'UTR SNP A G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRP4 4038 broad.mit.edu 37 11 46880421 46880421 + 3'UTR SNP G A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRP4 4038 broad.mit.edu 37 11 46880422 46880422 + 3'UTR SNP G A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRP4 4038 broad.mit.edu;hgsc.bcm.edu 37 11 46880582 46880582 + Silent SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP4 4038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46894661 46894661 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP4 4038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46895081 46895081 + Silent SNP G G A rs17848229 unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP4 4038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46898361 46898361 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP4 4038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46916747 46916747 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP4 4038 hgsc.bcm.edu 37 11 46914588 46914588 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP4 4038 hgsc.bcm.edu 37 11 46914588 46914588 + Silent SNP G G T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRP5 4041 broad.mit.edu;hgsc.bcm.edu 37 11 68216349 68216349 + Silent SNP C C T rs112415702 bycluster TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP5 4041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68125161 68125161 + Silent SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP5 4041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68183829 68183829 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP5 4041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68193567 68193567 + Silent SNP C C G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP5 4041 broad.mit.edu;ucsc.edu 37 11 68181463 68181474 + In_Frame_Del DEL GCAGCCGCAACT - - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 GCAGCCGCAACT GCAGCCGCAACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRP6 4040 broad.mit.edu;hgsc.bcm.edu 37 12 12278312 12278312 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRP6 4040 hgsc.bcm.edu;ucsc.edu 37 12 12315207 12315207 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP8 7804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53741419 53741419 + Missense_Mutation SNP C C T rs149347479 unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRP8 7804 hgsc.bcm.edu 37 1 53792606 53792606 + Silent SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRPPRC 10128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44145201 44145201 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRPPRC 10128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44176772 44176772 + Silent SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRPPRC 10128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44201856 44201856 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRPPRC 10128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44209499 44209499 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRPPRC 10128 hgsc.bcm.edu 37 2 44190792 44190792 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC10 376132 broad.mit.edu;hgsc.bcm.edu 37 12 70003903 70003903 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC14B 389257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 194972 194972 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC15 131578 hgsc.bcm.edu 37 3 194080112 194080112 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC15 131578 hgsc.bcm.edu 37 3 194081358 194081358 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC1 55227 broad.mit.edu 37 6 53787794 53787794 + 3'UTR DEL T - - rs67155925 unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC1 55227 broad.mit.edu 37 6 53787794 53787794 + 3'UTR DEL T - - rs67155925 unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC1 55227 broad.mit.edu 37 6 53787794 53787794 + 3'UTR DEL T - - rs67155925 unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC1 55227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 53787556 53787556 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC1 55227 hgsc.bcm.edu 37 6 53787551 53787551 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC16A 55604 broad.mit.edu 37 6 25279922 25279922 + 5'UTR SNP A G G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC16A 55604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25285102 25285102 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC16A 55604 broad.mit.edu;ucsc.edu 37 6 25509937 25509937 + Silent SNP C T T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC16A 55604 hgsc.bcm.edu;ucsc.edu 37 6 25538187 25538187 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC17 10234 broad.mit.edu;hgsc.bcm.edu 37 7 102585103 102585103 + 3'UTR SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC18 474354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50121787 50121787 + Silent SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC19 64922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 26999658 26999658 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC19 64922 hgsc.bcm.edu 37 9 26998211 26998211 + Frame_Shift_Del DEL T T - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC19 64922 hgsc.bcm.edu;ucsc.edu 37 9 26995607 26995607 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC20 55222 broad.mit.edu 37 10 72136294 72136294 + 5'UTR SNP A G G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC23 10233 broad.mit.edu 37 12 6993420 6993420 + Intron DEL C - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC23 10233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7023184 7023184 + Silent SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC24 441381 broad.mit.edu;hgsc.bcm.edu 37 8 145748563 145748563 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC27 80313 hgsc.bcm.edu 37 10 134161545 134161545 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC28 123355 broad.mit.edu 37 15 99926442 99926442 + 3'UTR SNP A G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC30 339291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7232028 7232028 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC32 2615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76371567 76371567 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196387147 196387147 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196387275 196387275 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196388312 196388312 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196388313 196388313 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC33 375387 hgsc.bcm.edu;ucsc.edu 37 3 196386769 196386775 + Frame_Shift_Del DEL CCTCAGC CCTCAGC - novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 CCTCAGC CCTCAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC34 151827 hgsc.bcm.edu;ucsc.edu 37 3 169514626 169514626 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC36 55282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67404969 67404969 + Silent SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC37A2 474170 broad.mit.edu 37 17 44625842 44625842 + Frame_Shift_Del DEL G - - novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37A3 374819 broad.mit.edu 37 17 62850588 62850588 + 3'UTR SNP G T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37A3 374819 broad.mit.edu 37 17 62892204 62892204 + Missense_Mutation SNP T A A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37A4 0 broad.mit.edu 37 17 43580698 43580698 + Intron SNP G A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37A4 0 broad.mit.edu 37 17 43587569 43587569 + Intron SNP G C C rs2667851 unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37A4 0 broad.mit.edu 37 17 43596309 43596309 + 5'Flank SNP G A A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37B 114659 broad.mit.edu 37 17 30357718 30357718 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC37B 114659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30348328 30348328 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC37B 114659 hgsc.bcm.edu;ucsc.edu 37 17 30358422 30358422 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC37B2 0 broad.mit.edu 37 17 28961189 28961189 + Frame_Shift_Del DEL A - - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC3 81543 broad.mit.edu 37 21 45876499 45876499 + 5'UTR SNP G C C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC3 81543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45876771 45876771 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC3B 116135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 26751684 26751684 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC40 55631 broad.mit.edu 37 1 70611331 70611331 + 3'UTR SNP G C C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC40 55631 broad.mit.edu;hgsc.bcm.edu 37 1 70671195 70671195 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC40 55631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70618119 70618119 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC41 10489 hgsc.bcm.edu 37 1 46744679 46744679 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC42 115353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54428053 54428053 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC42 115353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54433413 54433413 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC43 254050 hgsc.bcm.edu 37 12 122685163 122685163 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC43 254050 hgsc.bcm.edu 37 12 122685164 122685164 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC43 254050 hgsc.bcm.edu 37 12 122685176 122685176 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC45 201255 hgsc.bcm.edu;ucsc.edu 37 17 79986136 79986136 + Silent SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC4 64101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127669258 127669258 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC4 64101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127670011 127670011 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC4 64101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127670481 127670481 + Silent SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC46 90506 broad.mit.edu 37 17 45909254 45909254 + 5'UTR SNP T C C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC46 90506 broad.mit.edu;hgsc.bcm.edu 37 17 45914323 45914323 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC48 83450 hgsc.bcm.edu;ucsc.edu 37 17 17910368 17910368 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC49 54839 hgsc.bcm.edu;ucsc.edu 37 15 71211393 71211393 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC4C 57689 broad.mit.edu 37 11 40314365 40314368 + 5'UTR DEL CTTC - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 CTTC CTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC50 0 broad.mit.edu;hgsc.bcm.edu 37 16 84211446 84211446 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC52 440699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 165513950 165513950 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC55 219527 broad.mit.edu 37 11 56958045 56958045 + RNA DEL G - - rs34507924 unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC55 219527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56954876 56954876 + Silent SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC55 219527 hgsc.bcm.edu 37 11 56950122 56950122 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC56 115399 broad.mit.edu 37 11 551241 551241 + Silent SNP G C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC56 115399 broad.mit.edu;hgsc.bcm.edu 37 11 554294 554294 + 3'UTR SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC57 255252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42837393 42837393 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC57 255252 hgsc.bcm.edu 37 15 42837375 42837375 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC59 55379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48470252 48470252 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC61 65999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150034457 150034457 + Silent SNP T T A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC6 23639 hgsc.bcm.edu;ucsc.edu 37 8 133627359 133627359 + Intron SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC66 339977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 52861345 52861345 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC66 339977 hgsc.bcm.edu 37 4 52861963 52861963 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC66 339977 hgsc.bcm.edu;ucsc.edu 37 4 52862202 52862202 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC66 339977 hgsc.bcm.edu;ucsc.edu 37 4 52864031 52864031 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC69 100130742 broad.mit.edu 37 8 92231447 92231447 + 3'UTR DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC70 100130733 hgsc.bcm.edu;ucsc.edu 37 5 61877084 61877084 + Missense_Mutation SNP G G A rs147839866 by1000genomes TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC7 57554 broad.mit.edu 37 1 70505476 70505476 + Silent SNP G A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC7 57554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70504369 70504369 + Silent SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRRC7 57554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70518807 70518807 + Silent SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC7 57554 hgsc.bcm.edu;ucsc.edu 37 1 70555438 70555438 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC8A 56262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131669449 131669449 + Silent SNP T T A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC8A 56262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131678652 131678652 + 3'UTR SNP C C T novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC8B 23507 broad.mit.edu 37 1 90060838 90060838 + 3'UTR DEL T - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC8B 23507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90049487 90049487 + Silent SNP T T C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC8B 23507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90049715 90049715 + Silent SNP C C T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC8B 23507 broad.mit.edu;ucsc.edu 37 1 90048980 90048980 + Silent SNP A G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC8B 23507 hgsc.bcm.edu;ucsc.edu 37 1 90049857 90049857 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC8C 84230 hgsc.bcm.edu 37 1 90179731 90179731 + Silent SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC8D 55144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90400298 90400298 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRC8D 55144 hgsc.bcm.edu;ucsc.edu 37 1 90400549 90400549 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRC8E 80131 broad.mit.edu 37 19 7964517 7964517 + Silent SNP C T T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC8E 80131 broad.mit.edu 37 19 7965904 7965905 + 3'UTR INS - G G rs147400269 by1000genomes;alternate_allele TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRC8E 80131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7964495 7964495 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu 37 8 86019572 86019572 + Silent SNP G G T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86022019 86022019 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86037088 86037088 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86044062 86044062 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86047101 86047101 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86048083 86048083 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86050475 86050475 + Missense_Mutation SNP A A C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRFIP2 9209 hgsc.bcm.edu 37 3 37146934 37146934 + Intron SNP A A C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRIQ1 84125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 85438507 85438507 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ1 84125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 85450294 85450294 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ1 84125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 85546098 85546098 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ1 84125 hgsc.bcm.edu 37 12 85638646 85638646 + Frame_Shift_Del DEL A A - rs142232627 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ1 84125 hgsc.bcm.edu;ucsc.edu 37 12 85439805 85439805 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRIQ3 127255 broad.mit.edu 37 1 74663859 74663859 + 5'UTR SNP T C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74507303 74507303 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74507410 74507410 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74540469 74540469 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74575231 74575231 + Silent SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ4 344657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 169555371 169555371 + Silent SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRIQ4 344657 hgsc.bcm.edu 37 3 169540305 169540305 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRK1 79705 broad.mit.edu;hgsc.bcm.edu 37 15 101528945 101528945 + Silent SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRRK1 79705 broad.mit.edu;hgsc.bcm.edu 37 15 101606007 101606007 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRK1 79705 broad.mit.edu;hgsc.bcm.edu 37 15 101606305 101606305 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRK1 79705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101597210 101597210 + Silent SNP A A T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRRK1 79705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101601457 101601457 + Silent SNP G G A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRRK1 79705 hgsc.bcm.edu 37 15 101593136 101593136 + Silent SNP G G T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRK1 79705 hgsc.bcm.edu 37 15 101595284 101595284 + Silent SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRK1 79705 hgsc.bcm.edu 37 15 101595297 101595297 + Nonsense_Mutation SNP G G T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRK1 79705 hgsc.bcm.edu;ucsc.edu 37 15 101569276 101569276 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID LRRK2 120892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40689408 40689408 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRRK2 120892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40745464 40745464 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRK2 120892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40745465 40745465 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRK2 120892 hgsc.bcm.edu;ucsc.edu 37 12 40692241 40692241 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID LRRK2 120892 hgsc.bcm.edu;ucsc.edu 37 12 40702937 40702937 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LRRK2 120892 hgsc.bcm.edu;ucsc.edu 37 12 40714842 40714844 + In_Frame_Del DEL TGA TGA - novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 TGA TGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRRK2 120892 hgsc.bcm.edu;ucsc.edu 37 12 40758835 40758835 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID LRRN3 54674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 110764578 110764578 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRN4CL 221091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62455461 62455461 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRTM1 347730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80530941 80530941 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRTM2 26045 broad.mit.edu 37 5 138210719 138210719 + 5'UTR SNP G T T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRRTM2 26045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138209538 138209538 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRTM3 347731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 68687373 68687373 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRRTM3 347731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 68688186 68688186 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRSAM1 90678 hgsc.bcm.edu;ucsc.edu 37 9 130241215 130241215 + Silent SNP C C T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LRTM1 57408 broad.mit.edu 37 3 54962027 54962027 + 5'UTR SNP G C C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRTOMT 220074 broad.mit.edu 37 11 71820659 71820659 + 3'UTR DEL A - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRTOMT 220074 broad.mit.edu 37 11 71821373 71821373 + 3'UTR SNP A C C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRTOMT 220074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71816983 71816983 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRTOMT 220074 hgsc.bcm.edu;ucsc.edu 37 11 71816076 71816076 + Intron SNP T T A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRWD1 222229 broad.mit.edu 37 7 102108803 102108803 + Missense_Mutation SNP T A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LRWD1 222229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 102106463 102106463 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LRWD1 222229 hgsc.bcm.edu 37 7 102110011 102110011 + Intron SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSAMP 4045 broad.mit.edu 37 3 116163562 116163563 + Intron DEL AC - - rs139517990 by1000genomes TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSAMP 4045 broad.mit.edu 37 3 116163562 116163563 + Intron DEL AC - - rs139517990 by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSAMP 4045 broad.mit.edu 37 3 116163562 116163563 + Intron DEL AC - - rs139517990 by1000genomes TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM11 134353 broad.mit.edu 37 5 157170976 157170976 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM12 124801 broad.mit.edu;hgsc.bcm.edu 37 17 42141197 42141197 + Missense_Mutation SNP G G T rs17854322 unknown;alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSM1 27257 broad.mit.edu 37 8 38021012 38021013 + 3'UTR INS - A A rs34402880 unknown;alternate_allele TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM1 27257 broad.mit.edu 37 8 38021013 38021013 + 3'UTR DEL A - - rs34402880 unknown;alternate_allele TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM1 27257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38029515 38029515 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSM14A 26065 broad.mit.edu 37 19 34718608 34718608 + 3'UTR DEL T - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM14B 149986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60701436 60701436 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSM14B 149986 hgsc.bcm.edu;ucsc.edu 37 20 60705681 60705681 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LSM14B 149986 hgsc.bcm.edu;ucsc.edu 37 20 60708449 60708449 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSM4 25804 broad.mit.edu 37 19 18418165 18418165 + 3'UTR SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM6 11157 broad.mit.edu 37 4 147110954 147110954 + 3'UTR SNP C T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSM7 51690 broad.mit.edu;hgsc.bcm.edu 37 19 2321719 2321719 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSP1 4046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1908764 1908764 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LSP1 4046 broad.mit.edu;ucsc.edu 37 11 1908746 1908746 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSR 51599 hgsc.bcm.edu;ucsc.edu 37 19 35758705 35758705 + Intron SNP C C G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LSS 4047 broad.mit.edu 37 21 47629493 47629493 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LSS 4047 hgsc.bcm.edu 37 21 47642638 47642638 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LST-3TM12 0 broad.mit.edu;ucsc.edu 37 12 21172281 21172281 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LTA 4049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31541279 31541279 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTA4H 4048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96397644 96397644 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTA4H 4048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96414872 96414872 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTA4H 4048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96421288 96421288 + Silent SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTA4H 4048 hgsc.bcm.edu 37 12 96421314 96421314 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTA4H 4048 hgsc.bcm.edu 37 12 96421314 96421314 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTB4R 1241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24785139 24785139 + Silent SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33413692 33413692 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33534505 33534505 + Silent SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33534615 33534615 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33622348 33622348 + Silent SNP C C G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP1 4052 hgsc.bcm.edu 37 2 33412083 33412083 + Silent SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTBP2 4053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74967715 74967715 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP2 4053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74972836 74972836 + Silent SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP2 4053 hgsc.bcm.edu 37 14 75052560 75052560 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP2 4053 hgsc.bcm.edu;ucsc.edu 37 14 74983607 74983607 + Silent SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTBP3 4054 broad.mit.edu 37 11 65311761 65311762 + Intron DEL TC - - rs34294277 bycluster;by1000genomes TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LTBP3 4054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65308037 65308037 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP3 4054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65318874 65318874 + Silent SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP3 4054 hgsc.bcm.edu;ucsc.edu 37 11 65310998 65310998 + Silent SNP C C A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTBP4 8425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41105107 41105107 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP4 8425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41120306 41120306 + Silent SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP4 8425 hgsc.bcm.edu 37 19 41119376 41119376 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTBP4 8425 hgsc.bcm.edu 37 19 41132932 41132932 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP4 8425 hgsc.bcm.edu;ucsc.edu 37 19 41129556 41129556 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBP4 8425 hgsc.bcm.edu;ucsc.edu 37 19 41132926 41132926 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBR 4055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6493822 6493822 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTBR 4055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6495606 6495606 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTC4S 4056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179221063 179221063 + 5'UTR SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTF 4057 broad.mit.edu 37 3 46477692 46477692 + Silent SNP C T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LTF 4057 hgsc.bcm.edu 37 3 46479585 46479585 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTF 4057 hgsc.bcm.edu 37 3 46480866 46480866 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LTF 4057 hgsc.bcm.edu 37 3 46501284 46501285 + In_Frame_Ins INS - - CTT rs10662431 bycluster TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTN1 26046 hgsc.bcm.edu;ucsc.edu 37 21 30339421 30339422 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LTV1 84946 broad.mit.edu 37 6 144178368 144178368 + Intron SNP T G G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUC7L2 51631 broad.mit.edu;ucsc.edu 37 7 139086943 139086943 + Nonsense_Mutation SNP A T T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUC7L2 51631 broad.mit.edu;ucsc.edu 37 7 139097305 139097305 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUC7L3 51747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48818534 48818534 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LUC7L 55692 broad.mit.edu 37 16 239632 239633 + Intron INS - A A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUC7L 55692 broad.mit.edu 37 16 239633 239633 + Intron DEL A - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUM 4060 broad.mit.edu 37 12 91497883 91497883 + 3'UTR SNP C A A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUM 4060 broad.mit.edu 37 12 91497883 91497883 + 3'UTR SNP C A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUM 4060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 91502697 91502697 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LUM 4060 hgsc.bcm.edu 37 12 91502421 91502421 + Silent SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LUZP1 7798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 23418890 23418890 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LUZP1 7798 hgsc.bcm.edu;ucsc.edu 37 1 23418897 23418897 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LUZP2 338645 broad.mit.edu 37 11 25100121 25100121 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUZP2 338645 broad.mit.edu 37 11 25100364 25100364 + 3'UTR SNP A T T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LUZP2 338645 hgsc.bcm.edu 37 11 24927522 24927522 + Intron SNP T T C novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LUZP2 338645 hgsc.bcm.edu;ucsc.edu 37 11 24753686 24753686 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LUZP6 767558 broad.mit.edu 37 7 135614509 135614510 + 3'UTR INS - T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LXN 56925 broad.mit.edu 37 3 158390257 158390257 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LXN 56925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 158387254 158387254 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY6E 4061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144103076 144103076 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY6E 4061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144103077 144103077 + Silent SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY6G6C 80740 broad.mit.edu 37 6 31686821 31686821 + 3'UTR SNP G A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LY6G6F 259215 broad.mit.edu;hgsc.bcm.edu 37 6 31675443 31675444 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY6H 4062 broad.mit.edu 37 8 144240447 144240447 + Intron SNP C T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LY75 4065 broad.mit.edu 37 2 160628210 160628211 + 3'UTR DEL TT - - rs149298944 bycluster;by1000genomes TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LY75 4065 broad.mit.edu 37 2 160628210 160628211 + 3'UTR DEL TT - - rs149298944 bycluster;by1000genomes TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LY75 4065 broad.mit.edu 37 2 160661456 160661456 + 3'UTR SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LY75 4065 hgsc.bcm.edu 37 2 160697359 160697359 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LY75-CD302 100526664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160667078 160667078 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY75-CD302 100526664 hgsc.bcm.edu;ucsc.edu 37 2 160721395 160721395 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY86-AS1 285780 hgsc.bcm.edu;ucsc.edu 37 6 6536404 6536404 + RNA SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LY86-AS1 285780 hgsc.bcm.edu;ucsc.edu 37 6 6591390 6591390 + RNA SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY9 4063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160769615 160769615 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LY96 23643 hgsc.bcm.edu 37 8 74903724 74903724 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYAR 55646 hgsc.bcm.edu 37 4 4285456 4285456 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYG1 129530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99901199 99901199 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYL1 4066 broad.mit.edu 37 19 13211728 13211728 + Silent SNP C T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYNX1 66004 broad.mit.edu 37 8 143852785 143852785 + 3'UTR DEL C - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYPD1 116372 hgsc.bcm.edu;ucsc.edu 37 2 133403819 133403819 + Silent SNP C C T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYPD2 137797 broad.mit.edu;hgsc.bcm.edu 37 8 143832568 143832568 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYPD3 27076 broad.mit.edu 37 19 43966188 43966189 + Intron INS - A A rs35056869 bycluster;byfrequency TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYPD3 27076 broad.mit.edu 37 19 43969757 43969757 + 5'UTR SNP A G G rs2259013 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYPD3 27076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43967403 43967403 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYPD3 27076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43969649 43969649 + Silent SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYPD4 147719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42341277 42341277 + Silent SNP G G A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYPD4 147719 hgsc.bcm.edu 37 19 42341417 42341417 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYPD5 284348 broad.mit.edu 37 19 44300532 44300550 + 3'UTR DEL ATGAAAGTGTCCTGCACTC - - rs146604284 by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 ATGAAAGTGTCCTGCACTC ATGAAAGTGTCCTGCACTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYPD5 284348 broad.mit.edu 37 19 44303017 44303017 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYPD5 284348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44301842 44301842 + Silent SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYPLA1 10434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 54978369 54978369 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYPLA1 10434 hgsc.bcm.edu;ucsc.edu 37 8 54975949 54975949 + Intron SNP A A C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYPLA2P1 653639 broad.mit.edu 37 6 33333333 33333333 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYPLAL1 127018 hgsc.bcm.edu 37 1 219347283 219347283 + Silent SNP A A G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYRM4 57128 broad.mit.edu;hgsc.bcm.edu 37 6 5109597 5109597 + 3'UTR SNP A A C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYSMD4 145748 broad.mit.edu 37 15 100269225 100269225 + 3'UTR SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYSMD4 145748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 100269538 100269538 + Silent SNP C C T rs150607972 unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYSMD4 145748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 100269896 100269896 + Missense_Mutation SNP T T G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYST 1130 broad.mit.edu 37 1 235993390 235993390 + Intron DEL T - - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYST 1130 broad.mit.edu 37 1 235993390 235993390 + Intron DEL T - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235894212 235894212 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235918806 235918806 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235918888 235918889 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235922372 235922372 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235944201 235944201 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235969775 235969775 + Silent SNP C C T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235971939 235971939 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq LYST 1130 hgsc.bcm.edu 37 1 235971988 235971988 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYST 1130 hgsc.bcm.edu 37 1 235971988 235971988 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LYST 1130 hgsc.bcm.edu;ucsc.edu 37 1 235884146 235884146 + Silent SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYST 1130 hgsc.bcm.edu;ucsc.edu 37 1 235904825 235904825 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID LYST 1130 hgsc.bcm.edu;ucsc.edu 37 1 235950642 235950643 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LYVE1 10894 broad.mit.edu 37 11 10580541 10580541 + 3'UTR SNP G A A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LYZL4 131375 hgsc.bcm.edu 37 3 42438812 42438812 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID LZTR1 8216 broad.mit.edu 37 22 21351285 21351285 + Intron SNP C G G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LZTR1 8216 hgsc.bcm.edu 37 22 21348927 21348927 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq LZTS1 11178 broad.mit.edu 37 8 20112763 20112763 + 5'UTR SNP C T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx LZTS1 11178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 20107281 20107281 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq M6PR 4074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9098098 9098098 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq M6PR 4074 hgsc.bcm.edu 37 12 9098995 9098996 + In_Frame_Ins INS - - AAC novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAB21L1 4081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 36049398 36049398 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAB21L1 4081 broad.mit.edu;ucsc.edu 37 13 36049373 36049373 + Silent SNP G A A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAB21L2 10586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 151504561 151504561 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACC1 346389 broad.mit.edu 37 7 20180449 20180449 + 3'UTR SNP G C C rs113534252 unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MACC1 346389 broad.mit.edu 37 7 20180463 20180463 + 3'UTR SNP G C C rs113938645 unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MACC1 346389 hgsc.bcm.edu 37 7 20199087 20199087 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MACF1 23499 broad.mit.edu;hgsc.bcm.edu 37 1 39788664 39788664 + Missense_Mutation SNP G G A rs148253091 bycluster;by1000genomes TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G G A G G Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu 37 1 39934334 39934334 + Silent SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39715714 39715714 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39801310 39801310 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39823255 39823255 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39893209 39893209 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39908131 39908131 + Silent SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39909151 39909151 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACF1 23499 broad.mit.edu;ucsc.edu 37 1 39919424 39919424 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MACF1 23499 broad.mit.edu;ucsc.edu 37 1 39919425 39919425 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MACF1 23499 hgsc.bcm.edu 37 1 39799059 39799060 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACF1 23499 hgsc.bcm.edu 37 1 39900149 39900149 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MACF1 23499 hgsc.bcm.edu;ucsc.edu 37 1 39781186 39781194 + In_Frame_Del DEL ACACCCAGG ACACCCAGG - novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 ACACCCAGG ACACCCAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MACF1 23499 hgsc.bcm.edu;ucsc.edu 37 1 39799692 39799692 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID MACF1 23499 hgsc.bcm.edu;ucsc.edu 37 1 39889851 39889851 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MACROD2 140733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 15412069 15412069 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MACROD2 140733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 15967710 15967710 + Splice_Site SNP G G C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MACROD2 140733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 15967789 15967789 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MACROD2 140733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 16021897 16021897 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MAD1L1 8379 broad.mit.edu 37 7 1887069 1887069 + Intron DEL G - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAD1L1 8379 broad.mit.edu 37 7 1888764 1888765 + Intron INS - CA CA rs71548206 bycluster;by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAD1L1 8379 broad.mit.edu;hgsc.bcm.edu 37 7 2260622 2260622 + Intron SNP G G C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAD1L1 8379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 2255571 2255571 + Silent SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAD2L1 4085 broad.mit.edu;hgsc.bcm.edu 37 4 120981284 120981284 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MADCAM1 8174 broad.mit.edu 37 19 501762 501762 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MADCAM1 8174 broad.mit.edu 37 19 501762 501762 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MADCAM1 8174 hgsc.bcm.edu 37 19 501762 501762 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MADCAM1 8174 hgsc.bcm.edu 37 19 501767 501767 + Missense_Mutation SNP C C T rs78245161 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MADD 8567 broad.mit.edu;hgsc.bcm.edu 37 11 47336865 47336865 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MADD 8567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47306055 47306055 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MADD 8567 hgsc.bcm.edu;ucsc.edu 37 11 47299728 47299730 + In_Frame_Del DEL CCA CCA - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MADD 8567 hgsc.bcm.edu;ucsc.edu 37 11 47330867 47330867 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID MAEA 10296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1305934 1305934 + Silent SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAEL 84944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166962002 166962002 + Silent SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAF 4094 broad.mit.edu 37 16 79632478 79632479 + 3'UTR INS - GTGT GTGT rs72469829 unknown;alternate_allele TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAF 4094 broad.mit.edu 37 16 79632506 79632507 + 3'UTR INS - GG GG novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAF 4094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 79632954 79632954 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAF 4094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 79633710 79633710 + Silent SNP A A G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAFA 389692 broad.mit.edu 37 8 144511954 144511956 + In_Frame_Del DEL TGG - - rs141816879 bycluster;by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 TGG TGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAFA 389692 broad.mit.edu 37 8 144511954 144511956 + In_Frame_Del DEL TGG - - rs141816879 bycluster;by1000genomes TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 TGG TGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAFB 9935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39317054 39317054 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA10 4109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151303310 151303310 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA10 4109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151303633 151303633 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA11 4110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148797543 148797543 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA11(dist=47157) 0 hgsc.bcm.edu;ucsc.edu 37 X 148846085 148846085 + IGR SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA11(dist=47268) 0 hgsc.bcm.edu;ucsc.edu 37 X 148846196 148846196 + IGR SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA12 4111 broad.mit.edu 37 X 151896050 151896050 + RNA SNP G T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGEA12 4111 broad.mit.edu 37 X 151896334 151896334 + RNA SNP G A A rs2515828 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGEA4 4103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151092616 151092616 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA4 4103 hgsc.bcm.edu;ucsc.edu 37 X 151092605 151092605 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEA5 4104 broad.mit.edu 37 X 151283038 151283038 + 3'UTR SNP C A A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGEA5 4104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151283746 151283746 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEA6 4105 broad.mit.edu;hgsc.bcm.edu 37 X 151870276 151870276 + 3'UTR SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB10 139422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27840135 27840135 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB10 139422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27840420 27840420 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB16 139604 broad.mit.edu 37 X 35821205 35821205 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGEB16 139604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 35820494 35820494 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB16 139604 hgsc.bcm.edu;ucsc.edu 37 X 35821146 35821146 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEB2 4113 hgsc.bcm.edu 37 X 30236765 30236765 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEB2 4113 hgsc.bcm.edu 37 X 30236765 30236765 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEB2 4113 hgsc.bcm.edu 37 X 30236766 30236766 + Silent SNP G G A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEB3 4114 broad.mit.edu;hgsc.bcm.edu 37 X 30253983 30253983 + 5'UTR SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB3 4114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30254277 30254277 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB3 4114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30254882 30254882 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB4 4115 broad.mit.edu;hgsc.bcm.edu 37 X 30260747 30260747 + Silent SNP C C G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB6 158809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 26212326 26212326 + Silent SNP C C G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEB6 158809 hgsc.bcm.edu;ucsc.edu 37 X 26212893 26212893 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu 37 X 140994211 140994211 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140993373 140993373 + Silent SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140993825 140993825 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140994794 140994794 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140995587 140995587 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 broad.mit.edu;ucsc.edu 37 X 140996270 140996270 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGEC1 9947 hgsc.bcm.edu 37 X 140993864 140993864 + Missense_Mutation SNP T T C rs34836042 bycluster TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEC1 9947 hgsc.bcm.edu 37 X 140993877 140993877 + Silent SNP C C A rs176039 bycluster;byfrequency TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEC1 9947 hgsc.bcm.edu 37 X 140993904 140993906 + In_Frame_Del DEL CCC CCC - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 CCC CCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 hgsc.bcm.edu 37 X 140993904 140993906 + In_Frame_Del DEL CCC CCC - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 CCC CCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 hgsc.bcm.edu 37 X 140994055 140994068 + Frame_Shift_Del DEL GAGAGAACTCAGAG GAGAGAACTCAGAG - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GAGAGAACTCAGAG GAGAGAACTCAGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 hgsc.bcm.edu 37 X 140994462 140994462 + Missense_Mutation SNP A C C rs56675069 bycluster;byfrequency TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEC1 9947 hgsc.bcm.edu 37 X 140995291 140995291 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 hgsc.bcm.edu;ucsc.edu 37 X 140993716 140993716 + Missense_Mutation SNP G G C rs78700965 bycluster;byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEC1 9947 hgsc.bcm.edu;ucsc.edu 37 X 140996378 140996380 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEC3 139081 broad.mit.edu 37 X 140984220 140984220 + Intron SNP C A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGEC3 139081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140953292 140953292 + Silent SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGED1 9500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 51638670 51638670 + Silent SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGED1 9500 hgsc.bcm.edu 37 X 51638328 51638328 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGED1 9500 hgsc.bcm.edu 37 X 51640358 51640358 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGED1 9500 hgsc.bcm.edu;ucsc.edu 37 X 51637859 51637859 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGED2 10916 broad.mit.edu;hgsc.bcm.edu 37 X 54841822 54841822 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGED2 10916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54839919 54839919 + Splice_Site SNP A A G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGED2 10916 hgsc.bcm.edu 37 X 54834146 54834146 + 5'Promoter SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEE1 57692 broad.mit.edu;hgsc.bcm.edu 37 X 75649863 75649863 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAGEE1 57692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75648791 75648791 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEE1 57692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75650469 75650469 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAGEE2 139599 broad.mit.edu;hgsc.bcm.edu 37 X 75003527 75003527 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEE2 139599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75004670 75004670 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGEF1 64110 hgsc.bcm.edu 37 3 184429133 184429134 + In_Frame_Ins INS - - TCC novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGEL2 54551 hgsc.bcm.edu;ucsc.edu 37 15 23890714 23890714 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGI1 9223 broad.mit.edu 37 3 65346763 65346763 + Intron SNP T G G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGI1 9223 broad.mit.edu 37 3 65364846 65364846 + Intron SNP C T T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGI1 9223 broad.mit.edu;hgsc.bcm.edu 37 3 65425588 65425588 + Silent SNP C C T rs139785185 unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI1 9223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 65415803 65415805 + In_Frame_Del DEL ACA ACA - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 ACA ACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI1 9223 hgsc.bcm.edu 37 3 65415780 65415780 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGI1 9223 hgsc.bcm.edu 37 3 65425579 65425579 + Silent SNP C C T rs148523603 by1000genomes TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI2 9863 broad.mit.edu 37 7 77814874 77814874 + Intron SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAGI2 9863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 77885771 77885771 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI2 9863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 79082436 79082436 + Silent SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI2 9863 hgsc.bcm.edu 37 7 77998512 77998513 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI2 9863 hgsc.bcm.edu;ucsc.edu 37 7 78119122 78119122 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGI2 9863 hgsc.bcm.edu;ucsc.edu 37 7 78131009 78131010 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI3 260425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114184768 114184768 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI3 260425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114193677 114193677 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGI3 260425 hgsc.bcm.edu;ucsc.edu 37 1 113995310 113995310 + Intron SNP T T A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGI3 260425 hgsc.bcm.edu;ucsc.edu 37 1 114157263 114157263 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAGI3 260425 hgsc.bcm.edu;ucsc.edu 37 1 114193718 114193718 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGT1 84061 broad.mit.edu;hgsc.bcm.edu 37 X 77096799 77096799 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAGT1 84061 broad.mit.edu;hgsc.bcm.edu 37 X 77150869 77150869 + Silent SNP G G T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAK16 84549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 33354168 33354168 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAK16 84549 hgsc.bcm.edu 37 8 33346635 33346635 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAK16 84549 hgsc.bcm.edu 37 8 33354235 33354236 + In_Frame_Ins INS - - GAT novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAK 4117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10802230 10802230 + Silent SNP A A T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAK 4117 hgsc.bcm.edu 37 6 10796273 10796274 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALAT1 378938 broad.mit.edu 37 11 65270349 65270349 + RNA SNP T C C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MALAT1 378938 broad.mit.edu 37 11 65271716 65271716 + RNA SNP C T T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65266030 65266030 + RNA SNP C C G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65268083 65268083 + RNA SNP A A G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65270626 65270626 + RNA SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65272965 65272965 + RNA SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65273309 65273309 + RNA SNP A A G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65273403 65273403 + RNA SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MALT1 10892 hgsc.bcm.edu;ucsc.edu 37 18 56414818 56414818 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MALT1 10892 hgsc.bcm.edu;ucsc.edu 37 18 56414893 56414893 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAMDC4 158056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139748706 139748706 + Silent SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML1 9794 broad.mit.edu 37 5 179203181 179203181 + 3'UTR DEL T - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAML1 9794 broad.mit.edu 37 5 179222879 179222879 + 3'UTR SNP G C C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAML1 9794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179193074 179193074 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML1 9794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179193308 179193308 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML1 9794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179201812 179201812 + Silent SNP C C G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML1 9794 hgsc.bcm.edu 37 5 179195993 179195993 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAML1 9794 hgsc.bcm.edu 37 5 179201298 179201298 + Missense_Mutation SNP C C T rs61753466 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAML2 84441 broad.mit.edu 37 11 96074938 96074938 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAML2 84441 broad.mit.edu;hgsc.bcm.edu 37 11 95825502 95825502 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML2 84441 hgsc.bcm.edu 37 11 95825383 95825383 + Silent SNP C C T rs113349418 unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML2 84441 hgsc.bcm.edu 37 11 95825401 95825401 + Silent SNP C C T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML2 84441 hgsc.bcm.edu 37 11 95825797 95825797 + Silent SNP A A G rs7931870 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAML3 55534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 140640547 140640547 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML3 55534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 140811637 140811637 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAML3 55534 broad.mit.edu;ucsc.edu 37 4 140640694 140640694 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAML3 55534 hgsc.bcm.edu;ucsc.edu 37 4 140641167 140641167 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAML3 55534 hgsc.bcm.edu;ucsc.edu 37 4 140646919 140646919 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAMLD1 10046 broad.mit.edu 37 X 149639327 149639327 + Silent SNP G A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAMLD1 10046 broad.mit.edu;hgsc.bcm.edu 37 X 149639659 149639659 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAMLD1 10046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 149638089 149638089 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAMLD1 10046 hgsc.bcm.edu;ucsc.edu 37 X 149613802 149613802 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAMSTR 284358 broad.mit.edu 37 19 49216785 49216785 + Silent SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN1A1 4121 hgsc.bcm.edu;ucsc.edu 37 6 119522461 119522461 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN1A1 4121 hgsc.bcm.edu;ucsc.edu 37 6 119623209 119623209 + Missense_Mutation SNP T T G novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN1A2 10905 hgsc.bcm.edu;ucsc.edu 37 1 117984948 117984948 + Splice_Site SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAN1B1 11253 broad.mit.edu 37 9 139996194 139996195 + Intron DEL TG - - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN1B1 11253 broad.mit.edu 37 9 139996194 139996195 + Intron DEL TG - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN1B1 11253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140002045 140002045 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN1C1 57134 hgsc.bcm.edu;ucsc.edu 37 1 26083912 26083912 + Intron SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2A1 4124 broad.mit.edu 37 5 109202857 109202858 + 3'UTR DEL AG - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN2A1 4124 broad.mit.edu 37 5 109202858 109202858 + 3'UTR DEL G - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN2A1 4124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 109110522 109110522 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2A1 4124 hgsc.bcm.edu;ucsc.edu 37 5 109049281 109049281 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAN2A2 4122 broad.mit.edu 37 15 91454153 91454153 + Missense_Mutation SNP A C C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN2A2 4122 broad.mit.edu;ucsc.edu 37 15 91449980 91449980 + Silent SNP C A A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN2B2 23324 broad.mit.edu 37 4 6623175 6623175 + 3'UTR SNP T A A rs189314845 by1000genomes;alternate_allele TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAN2B2 23324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 6611625 6611625 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2B2 23324 hgsc.bcm.edu 37 4 6588812 6588812 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAN2C1 4123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75648339 75648339 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2C1 4123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75650634 75650634 + Missense_Mutation SNP C C G rs150703780 unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2C1 4123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75654746 75654746 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2C1 4123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75655087 75655087 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAN2C1 4123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75659878 75659878 + Missense_Mutation SNP C C G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MANBAL 63905 broad.mit.edu 37 20 35944852 35944852 + 3'UTR SNP G A A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANBAL 63905 hgsc.bcm.edu 37 20 35929689 35929692 + Frame_Shift_Del DEL CACC CACC - novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 CACC CACC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MANEA 79694 broad.mit.edu 37 6 96034896 96034897 + Intron DEL TG - - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANEA 79694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 96053676 96053676 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MANEA 79694 hgsc.bcm.edu 37 6 96053922 96053922 + Missense_Mutation SNP T T A rs35772543 bycluster;byfrequency;by1000genomes TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MANEAL 149175 broad.mit.edu 37 1 38261312 38261312 + Intron SNP G C C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANEAL 149175 broad.mit.edu;hgsc.bcm.edu 37 1 38260262 38260262 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MANSC1 54682 broad.mit.edu 37 12 12482819 12482819 + 3'UTR DEL C - - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANSC1 54682 broad.mit.edu 37 12 12482819 12482819 + 3'UTR DEL C - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANSC1 54682 broad.mit.edu 37 12 12482820 12482821 + 3'UTR INS - A A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANSC1 54682 broad.mit.edu 37 12 12482821 12482821 + 3'UTR DEL A - - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MANSC1 54682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 12483330 12483330 + Silent SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MANSC1 54682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 12483626 12483626 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MANSC1 54682 hgsc.bcm.edu;ucsc.edu 37 12 12483181 12483181 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MANSC1 54682 hgsc.bcm.edu;ucsc.edu 37 12 12491487 12491487 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAOA 4128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 43515580 43515580 + 5'UTR SNP C C T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAOA 4128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 43571201 43571201 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAOA 4128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 43571993 43571993 + Silent SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1A 4130 broad.mit.edu 37 15 43818938 43818938 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1A 4130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43821515 43821515 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1A 4130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43821933 43821933 + Silent SNP T T A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1A 4130 hgsc.bcm.edu 37 15 43816122 43816123 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1B 4131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 71494891 71494891 + Silent SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1B 4131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 71495395 71495395 + Silent SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1B 4131 hgsc.bcm.edu 37 5 71492078 71492078 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP1B 4131 hgsc.bcm.edu;ucsc.edu 37 5 71489932 71489932 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1B 4131 hgsc.bcm.edu;ucsc.edu 37 5 71493194 71493194 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP1B 4131 hgsc.bcm.edu;ucsc.edu 37 5 71495734 71495734 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP1LC3A 84557 broad.mit.edu;hgsc.bcm.edu 37 20 33137723 33137723 + 5'UTR SNP C C A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1LC3A 84557 broad.mit.edu;hgsc.bcm.edu 37 20 33147238 33147238 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1LC3B2 643246 broad.mit.edu 37 12 117013678 117013678 + 5'UTR SNP C T T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1LC3B2 643246 broad.mit.edu 37 12 117014397 117014397 + 3'UTR DEL A - - rs143046138 unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1LC3B2 643246 broad.mit.edu;hgsc.bcm.edu 37 12 117013990 117013990 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1LC3B2 643246 hgsc.bcm.edu 37 12 117014183 117014183 + 3'UTR SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1LC3B2 643246 hgsc.bcm.edu 37 12 117014183 117014183 + 3'UTR SNP A A G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1LC3B 81631 broad.mit.edu 37 16 87436808 87436808 + 3'UTR SNP G C C rs7865 bycluster;byfrequency;by1000genomes TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1LC3B 81631 broad.mit.edu 37 16 87436808 87436808 + 3'UTR SNP G C C rs7865 bycluster;byfrequency;by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1S 55201 broad.mit.edu 37 19 17836823 17836823 + Silent SNP C T T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1S 55201 broad.mit.edu 37 19 17838751 17838751 + Missense_Mutation SNP C A A rs138807804 unknown;alternate_allele TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP1S 55201 broad.mit.edu;hgsc.bcm.edu 37 19 17837059 17837059 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1S 55201 broad.mit.edu;hgsc.bcm.edu 37 19 17838796 17838796 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1S 55201 broad.mit.edu;hgsc.bcm.edu 37 19 17845254 17845254 + 3'UTR SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP1S 55201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17838790 17838790 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2 4133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 210561004 210561004 + Silent SNP C C T rs147926728 unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2 4133 hgsc.bcm.edu 37 2 210386079 210386079 + Intron SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2 4133 hgsc.bcm.edu 37 2 210386285 210386285 + Intron SNP A A C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2 4133 hgsc.bcm.edu 37 2 210386865 210386865 + Intron SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2 4133 hgsc.bcm.edu 37 2 210559405 210559405 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2 4133 hgsc.bcm.edu;ucsc.edu 37 2 210383254 210383254 + Intron SNP C C A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2 4133 hgsc.bcm.edu;ucsc.edu 37 2 210383708 210383708 + Intron SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2 4133 hgsc.bcm.edu;ucsc.edu 37 2 210559008 210559008 + Missense_Mutation SNP C C T rs146432517 unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21203907 21203907 + Silent SNP T T C rs73311539 bycluster;byfrequency TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2K3 5606 hgsc.bcm.edu 37 17 21204187 21204187 + Missense_Mutation SNP G G T rs56067280 bycluster;byfrequency;by1000genomes TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21204187 21204187 + Missense_Mutation SNP G G T rs56067280 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2K3 5606 hgsc.bcm.edu 37 17 21204187 21204187 + Missense_Mutation SNP G G T rs56067280 bycluster;byfrequency;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21204192 21204192 + Missense_Mutation SNP C C T rs56216806 bycluster;byfrequency;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21204192 21204192 + Missense_Mutation SNP C C T rs56216806 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2K3 5606 hgsc.bcm.edu 37 17 21204192 21204192 + Missense_Mutation SNP C C T rs56216806 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2K3 5606 hgsc.bcm.edu 37 17 21207795 21207795 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21207813 21207813 + Missense_Mutation SNP T T G rs74575904 bycluster;byfrequency TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2K3 5606 hgsc.bcm.edu 37 17 21215483 21215483 + Silent SNP C C T rs55935757 bycluster;byfrequency;by1000genomes TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP2K3 5606 hgsc.bcm.edu 37 17 21215552 21215552 + Silent SNP C C T rs56369732 bycluster;byfrequency;by1000genomes TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21215552 21215552 + Silent SNP C C T rs56369732 bycluster;byfrequency;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K3 5606 hgsc.bcm.edu 37 17 21215557 21215557 + Missense_Mutation SNP G G A rs35206134 bycluster;byfrequency;by1000genomes TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K5 5607 broad.mit.edu 37 15 67841455 67841455 + Intron DEL G - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP2K5 5607 hgsc.bcm.edu 37 15 68099075 68099075 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K5 5607 hgsc.bcm.edu 37 15 68099075 68099075 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K5 5607 hgsc.bcm.edu;ucsc.edu 37 15 67878293 67878293 + Intron SNP G G T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K6 5608 broad.mit.edu 37 17 67515735 67515735 + Intron SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP2K6 5608 hgsc.bcm.edu 37 17 67537827 67537827 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP2K7 5609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7977212 7977212 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K10 4294 broad.mit.edu 37 19 40720964 40720964 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP3K10 4294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40698354 40698354 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K10 4294 hgsc.bcm.edu 37 19 40698258 40698258 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP3K11 4296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65375920 65375920 + Splice_Site SNP C C A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K12 7786 broad.mit.edu;hgsc.bcm.edu 37 12 53880961 53880961 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K12 7786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53877445 53877445 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K12 7786 hgsc.bcm.edu 37 12 53878111 53878111 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP3K13 9175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 185195185 185195185 + Splice_Site SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K1 4214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56152549 56152549 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K1 4214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56160679 56160679 + Nonsense_Mutation SNP T T G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K1 4214 hgsc.bcm.edu 37 5 56177851 56177851 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K1 4214 hgsc.bcm.edu 37 5 56178606 56178606 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP3K1 4214 hgsc.bcm.edu;ucsc.edu 37 5 56178013 56178013 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP3K14 9020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43347888 43347888 + Silent SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K14 9020 hgsc.bcm.edu;ucsc.edu 37 17 43368049 43368049 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 broad.mit.edu;hgsc.bcm.edu 37 X 19378823 19378823 + 3'UTR SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 broad.mit.edu;hgsc.bcm.edu 37 X 19398325 19398325 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 19389075 19389075 + Splice_Site SNP A A C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 19410163 19410163 + Silent SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 hgsc.bcm.edu 37 X 19387229 19387230 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 hgsc.bcm.edu;ucsc.edu 37 X 19379616 19379617 + Frame_Shift_Del INS - - A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K15 389840 hgsc.bcm.edu;ucsc.edu 37 X 19398361 19398361 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K2 10746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128066283 128066283 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K2 10746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128066323 128066323 + Missense_Mutation SNP C C A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K3 4215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61762880 61762880 + Silent SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K4 4216 broad.mit.edu 37 6 161522201 161522201 + Intron DEL T - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu 37 6 161507426 161507426 + Silent SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu 37 6 161507427 161507427 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu 37 6 161537951 161537951 + 3'UTR SNP G G T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161470927 161470927 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161513128 161513128 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161523807 161523807 + Silent SNP T T C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAP3K4 4216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161530934 161530934 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAP3K4 4216 hgsc.bcm.edu 37 6 161519378 161519378 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K5 4217 broad.mit.edu 37 6 136878752 136878752 + 3'UTR DEL T - - rs71747329 unknown;alternate_allele TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP3K5 4217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136923035 136923035 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K5 4217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136972151 136972151 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K5 4217 broad.mit.edu;ucsc.edu 37 6 136932484 136932484 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP3K5 4217 hgsc.bcm.edu 37 6 137112970 137112970 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP3K5 4217 hgsc.bcm.edu;ucsc.edu 37 6 136879991 136879991 + Silent SNP T T C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP3K5 4217 hgsc.bcm.edu;ucsc.edu 37 6 137015318 137015319 + Frame_Shift_Del INS - - A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K6 9064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27684801 27684801 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K6 9064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27690800 27690800 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K7 6885 broad.mit.edu;hgsc.bcm.edu 37 6 91228282 91228282 + Splice_Site SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP3K9 4293 broad.mit.edu 37 14 71197381 71197381 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP3K9 4293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71267589 71267589 + Silent SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4 4134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47912403 47912403 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4 4134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47957988 47957988 + Silent SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4 4134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48019414 48019414 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K1 11184 hgsc.bcm.edu 37 19 39090705 39090705 + Intron SNP A A T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K1 11184 hgsc.bcm.edu 37 19 39108207 39108207 + Splice_Site SNP C C T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K2 5871 hgsc.bcm.edu;ucsc.edu 37 11 64564471 64564471 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K3 8491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39519948 39519948 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K3 8491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39564108 39564108 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K3 8491 hgsc.bcm.edu;ucsc.edu 37 2 39552914 39552914 + Missense_Mutation SNP G G A rs182117796 by1000genomes TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K3 8491 hgsc.bcm.edu;ucsc.edu 37 2 39564675 39564675 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K4 9448 broad.mit.edu 37 2 102486844 102486844 + Silent SNP C G G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP4K4 9448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 102460601 102460601 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K4 9448 hgsc.bcm.edu 37 2 102413263 102413263 + Intron SNP G G C rs141324519 by1000genomes;alternate_allele TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K4 9448 hgsc.bcm.edu;ucsc.edu 37 2 102490653 102490653 + Silent SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K5 11183 hgsc.bcm.edu 37 14 50943023 50943023 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP4K5 11183 hgsc.bcm.edu;ucsc.edu 37 14 50904202 50904202 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K5 11183 hgsc.bcm.edu;ucsc.edu 37 14 50904252 50904252 + Missense_Mutation SNP T T G rs10150701 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP4K5 11183 hgsc.bcm.edu;ucsc.edu 37 14 50952347 50952348 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP6 4135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 75298336 75298336 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP7 9053 broad.mit.edu;hgsc.bcm.edu 37 6 136683700 136683700 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP7 9053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136682267 136682267 + Missense_Mutation SNP C C T rs35107962 bycluster;byfrequency;alternate_allele TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP7 9053 hgsc.bcm.edu;ucsc.edu 37 6 136710548 136710548 + Frame_Shift_Del DEL C C - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP7D1 55700 broad.mit.edu 37 1 36643701 36643703 + In_Frame_Del DEL AGA - - rs141305015 bycluster;by1000genomes TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP7D1 55700 broad.mit.edu 37 1 36644331 36644333 + In_Frame_Del DEL GGA - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP7D1 55700 hgsc.bcm.edu 37 1 36644627 36644627 + Splice_Site SNP G G A rs111254290 unknown;alternate_allele TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP7D2 256714 broad.mit.edu 37 X 20074911 20074911 + Splice_Site SNP T C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP7D2 256714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 20081684 20081684 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP7D2 256714 hgsc.bcm.edu 37 X 20060638 20060638 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAP7D3 79649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135314179 135314179 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP7D3 79649 hgsc.bcm.edu 37 X 135328306 135328306 + Silent SNP T T A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP9 79884 broad.mit.edu 37 4 156268906 156268906 + 3'UTR SNP A G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAP9 79884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156281456 156281457 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAP9 79884 hgsc.bcm.edu 37 4 156276291 156276291 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAPK10 5602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87023072 87023072 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK10 5602 hgsc.bcm.edu;ucsc.edu 37 4 87024405 87024405 + Intron SNP A A G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK12 6300 broad.mit.edu;hgsc.bcm.edu 37 22 50695076 50695076 + Splice_Site SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK13 5603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36103575 36103575 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK14 1432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36043701 36043701 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK15 225689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144800451 144800451 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK15 225689 hgsc.bcm.edu 37 8 144801567 144801567 + Silent SNP G G C rs140965473 byfrequency TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAPK1 5594 hgsc.bcm.edu;ucsc.edu 37 22 22142570 22142570 + Silent SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAPK1IP1L 93487 broad.mit.edu 37 14 55531491 55531491 + 3'UTR SNP C A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAPK1IP1L 93487 broad.mit.edu 37 14 55531522 55531522 + 3'UTR SNP A G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAPK3 5595 broad.mit.edu;ucsc.edu 37 16 30133218 30133218 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAPK4 5596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48190332 48190332 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK4 5596 hgsc.bcm.edu 37 18 48190484 48190484 + Silent SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAPK7 5598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19284305 19284305 + Silent SNP C C G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK8IP1 9479 broad.mit.edu;hgsc.bcm.edu 37 11 45925587 45925587 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK8IP1 9479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45925699 45925699 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK8IP1 9479 hgsc.bcm.edu;ucsc.edu 37 11 45925694 45925694 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK8IP2 23542 broad.mit.edu 37 22 51042064 51042064 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAPK8IP3 23162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1793404 1793404 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK8IP3 23162 hgsc.bcm.edu 37 16 1808201 1808201 + Intron SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPK9 5601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179668101 179668101 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAPK9 5601 hgsc.bcm.edu 37 5 179676014 179676014 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAPKAP1 79109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 128284008 128284008 + 3'UTR SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPKAPK2 9261 broad.mit.edu 37 1 206906624 206906625 + 3'UTR DEL TA - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAPKAPK2 9261 broad.mit.edu 37 1 206906626 206906629 + 3'UTR DEL TGTG - - rs5780359 bycluster;by1000genomes;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 TGTG TGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAPKAPK2 9261 hgsc.bcm.edu 37 1 206903392 206903393 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPKAPK2 9261 hgsc.bcm.edu 37 1 206903392 206903393 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPKAPK5 8550 hgsc.bcm.edu;ucsc.edu 37 12 112305374 112305374 + Splice_Site SNP A A C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAPKBP1 23005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42107967 42107967 + Missense_Mutation SNP T T A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPKBP1 23005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42108803 42108803 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPRE3 22924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27245101 27245101 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAPT 4137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44061288 44061288 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH10 162333 broad.mit.edu 37 17 60782793 60782793 + Intron SNP G T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH10 162333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60802312 60802312 + Silent SNP C C A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH10 162333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60813347 60813347 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH10 162333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60814440 60814440 + Silent SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH10 162333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60814441 60814441 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH1 55016 broad.mit.edu 37 4 164449736 164449737 + 3'UTR INS - TGTT TGTT rs3832317 bycluster;by1000genomes TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH1 55016 broad.mit.edu 37 4 164449736 164449737 + 3'UTR INS - TGTT TGTT rs3832317 bycluster;by1000genomes TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH1 55016 broad.mit.edu 37 4 164449736 164449737 + 3'UTR INS - TGTT TGTT rs3832317 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH1 55016 broad.mit.edu;ucsc.edu 37 4 164450028 164450028 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH1 55016 hgsc.bcm.edu 37 4 164449988 164449988 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MARCH2 51257 hgsc.bcm.edu 37 19 8486884 8486884 + Missense_Mutation SNP G G A rs1133893 bycluster;byfrequency;byhapmap;by1000genomes TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MARCH5 54708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94109483 94109483 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH5 54708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94110949 94110949 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH6 10299 broad.mit.edu;ucsc.edu 37 5 10407230 10407230 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH7 64844 broad.mit.edu 37 2 160623882 160623882 + 3'UTR SNP G A A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH7 64844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160585646 160585646 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH8 220972 broad.mit.edu 37 10 45953559 45953559 + 3'UTR SNP G A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH8 220972 broad.mit.edu 37 10 45956930 45956930 + Intron SNP G C C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCH8 220972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 45959707 45959707 + Silent SNP T T A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCH9 92979 broad.mit.edu 37 12 58153294 58153294 + 3'UTR DEL G - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCKS 4082 broad.mit.edu 37 6 114181210 114181210 + Frame_Shift_Del DEL A - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCKS 4082 broad.mit.edu 37 6 114181210 114181210 + Frame_Shift_Del DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARCKS 4082 broad.mit.edu;hgsc.bcm.edu 37 6 114178975 114178975 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCKS 4082 hgsc.bcm.edu 37 6 114181301 114181302 + In_Frame_Ins INS - - TGAGGC novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARCKSL1 65108 broad.mit.edu 37 1 32799988 32799988 + 3'UTR DEL C - - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARK1 4139 broad.mit.edu;hgsc.bcm.edu 37 1 220835248 220835248 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MARK1 4139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220752837 220752837 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MARK1 4139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220835299 220835299 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARK1 4139 hgsc.bcm.edu 37 1 220789361 220789361 + Intron SNP T T A rs75194007 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARK2 2011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63668343 63668343 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARK2 2011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63670173 63670173 + Silent SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARK4 57787 broad.mit.edu;ucsc.edu 37 19 45800968 45800968 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARS2 92935 broad.mit.edu 37 2 198572076 198572077 + 3'UTR INS - TTC TTC rs34688524 bycluster;by1000genomes TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARS2 92935 broad.mit.edu 37 2 198572076 198572077 + 3'UTR INS - TTC TTC rs34688524 bycluster;by1000genomes TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MARS2 92935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 198571443 198571443 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARS2 92935 hgsc.bcm.edu 37 2 198570416 198570416 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARS2 92935 hgsc.bcm.edu 37 2 198571042 198571042 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MARS2 92935 hgsc.bcm.edu 37 2 198571043 198571043 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MARS 4141 broad.mit.edu;hgsc.bcm.edu 37 12 57881962 57881962 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARS 4141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57908819 57908819 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MARVELD3 91862 hgsc.bcm.edu 37 16 71663303 71663303 + Silent SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAS1 4142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160328147 160328147 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAS1L 116511 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29454618 29454618 + Silent SNP T T A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MASP1 5648 broad.mit.edu 37 3 186937265 186937266 + 3'UTR INS - T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MASP1 5648 broad.mit.edu 37 3 186953403 186953403 + Intron SNP T C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MASP1 5648 broad.mit.edu 37 3 186964879 186964880 + Intron INS - T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MASP1 5648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186947662 186947662 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MASP1 5648 hgsc.bcm.edu;ucsc.edu 37 3 186937985 186937985 + Silent SNP G G A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MASP2 10747 hgsc.bcm.edu;ucsc.edu 37 1 11087333 11087333 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAST1 22983 hgsc.bcm.edu 37 19 12975920 12975920 + Silent SNP G G T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MAST2 23139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46497886 46497886 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAST2 23139 hgsc.bcm.edu 37 1 46493446 46493446 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAST3 23031 broad.mit.edu 37 19 18234143 18234143 + Silent SNP C A A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAST3 23031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18254635 18254635 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAST3 23031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18255405 18255405 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAST4 375449 broad.mit.edu 37 5 66438350 66438350 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66448561 66448561 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66459285 66459285 + Silent SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66459741 66459741 + Silent SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66460450 66460450 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66462356 66462356 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MAST4 375449 broad.mit.edu;ucsc.edu 37 5 66462005 66462005 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MASTL 84930 hgsc.bcm.edu;ucsc.edu 37 10 27458935 27458935 + Silent SNP A A C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAT2A 4144 broad.mit.edu;hgsc.bcm.edu 37 2 85770896 85770896 + 3'UTR SNP A A C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAT2A 4144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85768975 85768975 + Silent SNP T T C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAT2A 4144 hgsc.bcm.edu;ucsc.edu 37 2 85768223 85768223 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAT2A 4144 hgsc.bcm.edu;ucsc.edu 37 2 85769804 85769804 + Silent SNP T T C novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAT2B 27430 broad.mit.edu 37 5 162944783 162944783 + Intron SNP T C C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MATK 4145 broad.mit.edu 37 19 3783901 3783901 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MATN1 4146 broad.mit.edu 37 1 31186225 31186226 + 3'UTR DEL CA - - rs71794590 bycluster;by1000genomes TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MATN1 4146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 31188992 31188992 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MATN2 4147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99028778 99028778 + Silent SNP T T C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MATN2 4147 hgsc.bcm.edu;ucsc.edu 37 8 99028832 99028832 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MATN2 4147 hgsc.bcm.edu;ucsc.edu 37 8 99030307 99030307 + Silent SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MATR3 9782 broad.mit.edu 37 5 138665246 138665246 + 3'UTR DEL A - - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MATR3 9782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138643267 138643267 + Silent SNP T T C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MATR3 9782 hgsc.bcm.edu 37 5 138653359 138653360 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MAU2 23383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19453474 19453474 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAU2 23383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19459978 19459978 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAVS 57506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3845153 3845153 + Silent SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAX 4149 broad.mit.edu 37 14 65543066 65543066 + 3'UTR DEL A - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAX 4149 broad.mit.edu 37 14 65569055 65569055 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAX 4149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65569042 65569042 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAX 4149 hgsc.bcm.edu;ucsc.edu 37 14 65560495 65560495 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MAZ 4150 broad.mit.edu 37 16 29820816 29820817 + Intron INS - C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAZ 4150 broad.mit.edu 37 16 29821179 29821179 + Intron SNP A G G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MAZ 4150 broad.mit.edu;hgsc.bcm.edu 37 16 29819646 29819646 + Intron SNP T T C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD1 4152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47799982 47799982 + Silent SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD1 4152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47803544 47803544 + Silent SNP A A C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD1 4152 hgsc.bcm.edu;ucsc.edu 37 18 47799227 47799227 + Silent SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD1 4152 hgsc.bcm.edu;ucsc.edu 37 18 47799782 47799782 + Silent SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBD3L1 85509 broad.mit.edu 37 19 8953327 8953327 + 5'UTR SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD3L3 653657 hgsc.bcm.edu 37 19 7056593 7056593 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD4 8930 broad.mit.edu 37 3 129150264 129150264 + 3'UTR SNP A G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD4 8930 broad.mit.edu 37 3 129150264 129150264 + 3'UTR SNP A G G novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD4 8930 broad.mit.edu 37 3 129150269 129150269 + 3'UTR SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD4 8930 broad.mit.edu 37 3 129150269 129150269 + 3'UTR SNP T G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD4 8930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129152917 129152917 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD4 8930 broad.mit.edu;ucsc.edu 37 3 129152727 129152727 + Silent SNP A G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD4 8930 hgsc.bcm.edu 37 3 129152947 129152950 + Frame_Shift_Del DEL TTCT TTCT - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 TTCT TTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD5 55777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 149227852 149227852 + Silent SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD5 55777 hgsc.bcm.edu;ucsc.edu 37 2 149226840 149226840 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBD6 114785 broad.mit.edu;hgsc.bcm.edu 37 12 57919671 57919671 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD6 114785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57920770 57920770 + Silent SNP T T G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD6 114785 broad.mit.edu;ucsc.edu 37 12 57921633 57921633 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MBD6 114785 hgsc.bcm.edu 37 12 57919667 57919667 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBD6 114785 hgsc.bcm.edu;ucsc.edu 37 12 57919663 57919663 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBL2 4153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 54527937 54527937 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBLAC1 255374 hgsc.bcm.edu;ucsc.edu 37 7 99725646 99725646 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBLAC2 153364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89757120 89757120 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBNL3 55796 hgsc.bcm.edu 37 X 131525019 131525019 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBOAT1 154141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 20144501 20144501 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBOAT2 129642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9048798 9048798 + Silent SNP A A C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBOAT7 79143 broad.mit.edu;hgsc.bcm.edu 37 19 54682431 54682431 + 3'UTR SNP C C A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBP 4155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 74728852 74728852 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBP 4155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 74778271 74778271 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBTD1 54799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 49279412 49279412 + Missense_Mutation SNP A A T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBTD1 54799 hgsc.bcm.edu 37 17 49294689 49294689 + Splice_Region SNP A A T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBTD1 54799 hgsc.bcm.edu;ucsc.edu 37 17 49281212 49281212 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBTD1 54799 hgsc.bcm.edu;ucsc.edu 37 17 49281222 49281222 + Silent SNP A A G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBTPS1 8720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84101412 84101412 + Silent SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MBTPS1 8720 hgsc.bcm.edu 37 16 84089720 84089720 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MBTPS1 8720 hgsc.bcm.edu;ucsc.edu 37 16 84103636 84103636 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MC2R 4158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 13885108 13885108 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MC2R 4158 hgsc.bcm.edu 37 18 13884683 13884683 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MC2R 4158 hgsc.bcm.edu;ucsc.edu 37 18 13885200 13885200 + Silent SNP G G T rs147706299 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MC3R 4159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 54824097 54824097 + Silent SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MC3R 4159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 54824370 54824370 + Silent SNP C C A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MC3R 4159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 54824503 54824503 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MC3R 4159 hgsc.bcm.edu;ucsc.edu 37 20 54824473 54824473 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MC4R 4160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 58039328 58039328 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MC5R 4161 hgsc.bcm.edu;ucsc.edu 37 18 13826006 13826006 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCAM 4162 broad.mit.edu 37 11 119187759 119187761 + In_Frame_Del DEL CAG - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCAM 4162 hgsc.bcm.edu;ucsc.edu 37 11 119182813 119182813 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCART3P 0 broad.mit.edu 37 6 66498794 66498794 + RNA SNP C T T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCART6 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 103349894 103349894 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCAT 27349 broad.mit.edu 37 22 43528217 43528217 + 3'UTR DEL G - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCC 4163 broad.mit.edu 37 5 112824048 112824049 + In_Frame_Ins INS - GCC GCC novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCC 4163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112437520 112437520 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCC 4163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112458491 112458491 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCC 4163 hgsc.bcm.edu 37 5 112399691 112399692 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC1 56922 broad.mit.edu 37 3 182733066 182733066 + 3'UTR SNP G A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCCC1 56922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182740269 182740269 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC1 56922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182759359 182759359 + Silent SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC1 56922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182759471 182759471 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC2 64087 broad.mit.edu 37 5 70952871 70952871 + 3'UTR SNP T C C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCCC2 64087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70928000 70928000 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC2 64087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70930789 70930789 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC2 64087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70945080 70945080 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCCC2 64087 hgsc.bcm.edu 37 5 70922483 70922483 + Missense_Mutation SNP G G A rs277995 unknown;alternate_allele TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCEE 84693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71351338 71351338 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCF2 4168 broad.mit.edu 37 X 138724842 138724842 + 5'UTR DEL A - - novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCF2 4168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 138713618 138713618 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCF2L2 23101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182897463 182897463 + Silent SNP C C T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCF2L2 23101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183035915 183035915 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCF2L2 23101 hgsc.bcm.edu 37 3 182923678 182923678 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCHR2 84539 broad.mit.edu;hgsc.bcm.edu 37 6 100368762 100368762 + 3'UTR SNP A A T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCHR2 84539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100390871 100390871 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCHR2 84539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100395756 100395756 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM10 55388 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13213138 13213138 + Missense_Mutation SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM2 4171 broad.mit.edu 37 3 127340675 127340675 + 3'UTR SNP C A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCM2 4171 broad.mit.edu;hgsc.bcm.edu 37 3 127337930 127337930 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM2 4171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 127325478 127325478 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM2 4171 hgsc.bcm.edu 37 3 127323892 127323893 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM3 4172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52129392 52129392 + Silent SNP G G A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM3AP 8888 broad.mit.edu 37 21 47686137 47686137 + Intron SNP C A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCM3AP 8888 broad.mit.edu;hgsc.bcm.edu 37 21 47692488 47692488 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM3AP 8888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47663535 47663535 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM3AP 8888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47692476 47692476 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM3AP 8888 broad.mit.edu;ucsc.edu 37 21 47685911 47685911 + Missense_Mutation SNP T A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCM3AP 8888 broad.mit.edu;ucsc.edu 37 21 47705106 47705106 + Missense_Mutation SNP C A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCM4 4173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48874107 48874107 + Silent SNP T T A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM4 4173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48889311 48889311 + Silent SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM5 4174 broad.mit.edu 37 22 35806526 35806527 + Intron INS - CAAT CAAT novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCM5 4174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 35815920 35815920 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM6 4175 broad.mit.edu;hgsc.bcm.edu 37 2 136633848 136633848 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM6 4175 hgsc.bcm.edu 37 2 136626383 136626383 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCM6 4175 hgsc.bcm.edu;ucsc.edu 37 2 136608981 136608981 + Silent SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCM7 4176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99693535 99693535 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM7 4176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99695276 99695276 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM7 4176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99697218 99697218 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCM7 4176 broad.mit.edu;ucsc.edu 37 7 99693479 99693479 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCM8 84515 broad.mit.edu 37 20 5975124 5975125 + 3'UTR INS - AC AC rs10541892 unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCOLN1 57192 hgsc.bcm.edu;ucsc.edu 37 19 7589957 7589957 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCOLN3 55283 broad.mit.edu 37 1 85488090 85488090 + Intron SNP G C C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCOLN3 55283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85491737 85491737 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCOLN3 55283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85511028 85511028 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCOLN3 55283 hgsc.bcm.edu 37 1 85487844 85487844 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCOLN3 55283 hgsc.bcm.edu 37 1 85494842 85494842 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCOLN3 55283 hgsc.bcm.edu;ucsc.edu 37 1 85486913 85486913 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCPH1 79648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 6302771 6302771 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCPH1 79648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 6302811 6302811 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCPH1 79648 hgsc.bcm.edu 37 8 6302121 6302122 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCPH1 79648 hgsc.bcm.edu 37 8 6312675 6312675 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCPH1 79648 hgsc.bcm.edu;ucsc.edu 37 8 6296490 6296502 + Frame_Shift_Del DEL TCTCTTATTTGAA TCTCTTATTTGAA - novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 TCTCTTATTTGAA TCTCTTATTTGAA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCPH1 79648 hgsc.bcm.edu;ucsc.edu 37 8 6302310 6302310 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MCRS1 10445 broad.mit.edu 37 12 49952386 49952386 + 3'UTR SNP A G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCRS1 10445 broad.mit.edu 37 12 49960072 49960072 + Intron SNP C T T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCRS1 10445 broad.mit.edu 37 12 49960086 49960086 + Intron SNP A T T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MCRS1 10445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49954117 49954117 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCTP2 55784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 95001402 95001402 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCTP2 55784 hgsc.bcm.edu;ucsc.edu 37 15 95013580 95013580 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MCTS1 28985 hgsc.bcm.edu 37 X 119739390 119739390 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDC1 9656 hgsc.bcm.edu;ucsc.edu 37 6 30672175 30672175 + Silent SNP C C G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDFIC 29969 broad.mit.edu 37 7 114656337 114656338 + 3'UTR DEL CA - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MDGA1 266727 broad.mit.edu 37 6 37603708 37603708 + 3'UTR SNP A T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MDGA1 266727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 37606075 37606075 + Silent SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDGA1 266727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 37615095 37615095 + Missense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDGA1 266727 hgsc.bcm.edu 37 6 37623473 37623473 + Intron SNP G G C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDGA2 161357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 47600945 47600945 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDGA2 161357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 47613333 47613333 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDGA2 161357 hgsc.bcm.edu 37 14 47566320 47566320 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDGA2 161357 hgsc.bcm.edu;ucsc.edu 37 14 47613397 47613397 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDH1 4190 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63834039 63834039 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDH1B 130752 broad.mit.edu 37 2 207603138 207603138 + 3'UTR SNP C A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MDH1B 130752 hgsc.bcm.edu 37 2 207619861 207619861 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDK 4192 broad.mit.edu 37 11 46404867 46404867 + Intron SNP C G G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MDM1 56890 broad.mit.edu 37 12 68721137 68721137 + Intron DEL A - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MDM1 56890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 68720392 68720392 + Silent SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDM2 4193 broad.mit.edu 37 12 69233935 69233935 + 3'UTR DEL T - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MDN1 23195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90358035 90358035 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDN1 23195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90388338 90388338 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDN1 23195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90399594 90399595 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDN1 23195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90513110 90513110 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDN1 23195 hgsc.bcm.edu 37 6 90356250 90356250 + Splice_Region SNP G G C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDN1 23195 hgsc.bcm.edu 37 6 90356250 90356250 + Splice_Region SNP G G C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDN1 23195 hgsc.bcm.edu;ucsc.edu 37 6 90362818 90362818 + Missense_Mutation SNP G G A rs149487165 bycluster;by1000genomes;alternate_allele TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MDN1 23195 hgsc.bcm.edu;ucsc.edu 37 6 90440533 90440534 + Frame_Shift_Ins INS - - T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MDN1 23195 hgsc.bcm.edu;ucsc.edu 37 6 90499925 90499925 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ME1 4199 broad.mit.edu 37 6 84140689 84140691 + 5'UTR DEL CGG - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ME1 4199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 83963360 83963360 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ME2 4200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48422198 48422198 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ME2 4200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48439249 48439249 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ME3 10873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 86159278 86159278 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ME3 10873 hgsc.bcm.edu;ucsc.edu 37 11 86198484 86198484 + Splice_Site SNP T T G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MEAF6 64769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 37975131 37975131 + Silent SNP G G A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MECOM 2122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 168802758 168802758 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MECOM 2122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 168833688 168833688 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MECOM 2122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 168833806 168833806 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MECOM 2122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 168849313 168849314 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MECOM 2122 broad.mit.edu 37 3 168802651 168802651 + 3'UTR SNP C T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MECOM 2122 broad.mit.edu 37 3 168862968 168862981 + Intron DEL ACACACACACAGAG - - rs151149708 bycluster;by1000genomes TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 ACACACACACAGAG ACACACACACAGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MECOM 2122 broad.mit.edu 37 3 168864961 168864961 + 5'Flank DEL C - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MECOM 2122 hgsc.bcm.edu 37 3 168818756 168818756 + Splice_Region SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MECP2 4204 broad.mit.edu 37 X 153295696 153295696 + 3'UTR DEL A - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MECP2 4204 broad.mit.edu;ucsc.edu 37 X 153296886 153296886 + Silent SNP G C C rs61748385 unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MECR 51102 hgsc.bcm.edu 37 1 29528533 29528533 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED10 84246 broad.mit.edu;hgsc.bcm.edu 37 5 6372588 6372588 + 3'UTR SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED10 84246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 6372701 6372701 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED12 9968 broad.mit.edu 37 X 70360569 70360569 + Silent SNP T C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED12 9968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70341181 70341181 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED12 9968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70342188 70342188 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED12 9968 hgsc.bcm.edu 37 X 70349584 70349584 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED12 9968 hgsc.bcm.edu 37 X 70352801 70352801 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED12L 116931 broad.mit.edu 37 3 151100523 151100523 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED12L 116931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150874118 150874118 + Splice_Site SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED12L 116931 broad.mit.edu;ucsc.edu 37 3 151134124 151134124 + Frame_Shift_Del DEL C - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED12L 116931 hgsc.bcm.edu 37 3 150845660 150845660 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED12L 116931 hgsc.bcm.edu 37 3 151134118 151134118 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED12L 116931 hgsc.bcm.edu 37 3 151134118 151134118 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED12L 116931 hgsc.bcm.edu;ucsc.edu 37 3 150845653 150845653 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED12L 116931 hgsc.bcm.edu;ucsc.edu 37 3 150903129 150903129 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED12L 116931 hgsc.bcm.edu;ucsc.edu 37 3 151067920 151067920 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED13 9969 broad.mit.edu 37 17 60020018 60020018 + 3'UTR DEL T - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED13 9969 broad.mit.edu 37 17 60023567 60023568 + 3'UTR INS - A A rs71727113 unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED13 9969 broad.mit.edu 37 17 60023568 60023568 + 3'UTR DEL A - - rs71727113 unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED13 9969 broad.mit.edu;hgsc.bcm.edu 37 17 60072679 60072679 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60028244 60028244 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60038959 60038959 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60129921 60129921 + Silent SNP T T C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60140520 60140520 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 hgsc.bcm.edu 37 17 60023848 60023848 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED13 9969 hgsc.bcm.edu 37 17 60088124 60088124 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED13 9969 hgsc.bcm.edu 37 17 60140649 60140649 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED13 9969 hgsc.bcm.edu;ucsc.edu 37 17 60039068 60039073 + In_Frame_Del DEL ATTTTA ATTTTA - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 ATTTTA ATTTTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 hgsc.bcm.edu;ucsc.edu 37 17 60059957 60059957 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13 9969 hgsc.bcm.edu;ucsc.edu 37 17 60088502 60088502 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED13L 23389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 116409971 116409971 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED13L 23389 broad.mit.edu;ucsc.edu 37 12 116429263 116429263 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED13L 23389 broad.mit.edu;ucsc.edu 37 12 116549250 116549250 + Silent SNP G T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED14 9282 broad.mit.edu;hgsc.bcm.edu 37 X 40568603 40568603 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MED14 9282 broad.mit.edu;hgsc.bcm.edu 37 X 40573155 40573155 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MED14 9282 hgsc.bcm.edu 37 X 40526075 40526075 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED14 9282 hgsc.bcm.edu;ucsc.edu 37 X 40570475 40570475 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED1 5469 broad.mit.edu 37 17 37562165 37562165 + 3'UTR DEL T - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED1 5469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37565879 37565879 + Silent SNP G G A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED1 5469 hgsc.bcm.edu;ucsc.edu 37 17 37580984 37580984 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED15 51586 broad.mit.edu 37 22 20861886 20861886 + 5'UTR SNP G T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED15 51586 broad.mit.edu 37 22 20920819 20920819 + Silent SNP G A A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED15 51586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 20921042 20921042 + Silent SNP T T C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED15 51586 broad.mit.edu;ucsc.edu 37 22 20929497 20929497 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED16 10025 broad.mit.edu 37 19 873769 873770 + Intron INS - C C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED16 10025 broad.mit.edu;hgsc.bcm.edu 37 19 884992 884992 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED16 10025 hgsc.bcm.edu 37 19 871987 871987 + Silent SNP G G A rs78047294 bycluster;byfrequency;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED17 9440 hgsc.bcm.edu 37 11 93526948 93526948 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED17 9440 hgsc.bcm.edu;ucsc.edu 37 11 93521254 93521254 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED17 9440 hgsc.bcm.edu;ucsc.edu 37 11 93535101 93535101 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED18 54797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28661113 28661113 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED18 54797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28661233 28661233 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED18 54797 hgsc.bcm.edu;ucsc.edu 37 1 28657186 28657186 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED18 54797 hgsc.bcm.edu;ucsc.edu 37 1 28660959 28660959 + Silent SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED19 219541 broad.mit.edu 37 11 57471904 57471904 + Intron SNP C G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED20 9477 hgsc.bcm.edu;ucsc.edu 37 6 41884633 41884633 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED23 9439 broad.mit.edu 37 6 131931276 131931276 + Silent SNP G T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED23 9439 hgsc.bcm.edu;ucsc.edu 37 6 131936512 131936512 + Intron SNP C C T novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED24 9862 broad.mit.edu;ucsc.edu 37 17 38182523 38182523 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED24 9862 hgsc.bcm.edu;ucsc.edu 37 17 38176135 38176135 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED24 9862 hgsc.bcm.edu;ucsc.edu 37 17 38184150 38184150 + Intron SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED25 81857 broad.mit.edu 37 19 50322611 50322611 + Intron SNP T G G rs1640512 bycluster;byfrequency;by1000genomes TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED25 81857 broad.mit.edu;hgsc.bcm.edu 37 19 50338353 50338353 + Silent SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED25 81857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50322487 50322487 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED25 81857 hgsc.bcm.edu 37 19 50333063 50333063 + Silent SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED26 9441 broad.mit.edu 37 19 16686550 16686550 + 3'UTR DEL T - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED26 9441 broad.mit.edu;ucsc.edu 37 19 16687395 16687395 + Missense_Mutation SNP T G G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED27 9442 broad.mit.edu 37 9 134735980 134735980 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED27 9442 broad.mit.edu 37 9 134955076 134955076 + Silent SNP A G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED27 9442 hgsc.bcm.edu 37 9 134889741 134889741 + Silent SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MED30 90390 broad.mit.edu 37 8 118552346 118552346 + 3'UTR SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED30 90390 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 118552190 118552190 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED4 29079 broad.mit.edu 37 13 48669155 48669155 + Silent SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED4 29079 broad.mit.edu;hgsc.bcm.edu 37 13 48669206 48669206 + Silent SNP C C G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED4 29079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 48651403 48651403 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED6 10001 broad.mit.edu 37 14 71067337 71067337 + Silent SNP G A A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED7 9443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156565914 156565914 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MED8 112950 broad.mit.edu 37 1 43849988 43849988 + 3'UTR SNP G T T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MED9 55090 broad.mit.edu;hgsc.bcm.edu 37 17 17380342 17380342 + 5'UTR SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEF2A 4205 broad.mit.edu 37 15 100252892 100252892 + Frame_Shift_Del DEL A - - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEF2A 4205 hgsc.bcm.edu 37 15 100211780 100211780 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEF2C 4208 broad.mit.edu 37 5 88018306 88018306 + 3'UTR DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEF2D 4209 broad.mit.edu 37 1 156435200 156435201 + 3'UTR INS - C C novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEF2D 4209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156446973 156446973 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEFV 4210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3304667 3304667 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEFV 4210 broad.mit.edu;ucsc.edu 37 16 3293876 3293876 + Silent SNP G A A rs104895161 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF10 84466 broad.mit.edu 37 5 126793028 126793028 + 3'UTR SNP G T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF10 84466 broad.mit.edu 37 5 126793028 126793028 + 3'UTR SNP G T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF10 84466 broad.mit.edu 37 5 126793028 126793028 + 3'UTR SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF10 84466 broad.mit.edu 37 5 126793028 126793028 + 3'UTR SNP G T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF10 84466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 126774247 126774247 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF10 84466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 126776499 126776499 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF10 84466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 126778709 126778709 + Nonsense_Mutation SNP T T G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF10 84466 hgsc.bcm.edu 37 5 126754856 126754856 + Silent SNP A A T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF10 84466 hgsc.bcm.edu;ucsc.edu 37 5 126754854 126754854 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF11 84465 hgsc.bcm.edu;ucsc.edu 37 15 66411490 66411490 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MEGF6 1953 broad.mit.edu 37 1 3405820 3405822 + 3'UTR DEL CTC - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF6 1953 broad.mit.edu 37 1 3519151 3519152 + Frame_Shift_Del DEL CA - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF6 1953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3519075 3519075 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF6 1953 hgsc.bcm.edu 37 1 3413839 3413840 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF6 1953 hgsc.bcm.edu 37 1 3424401 3424402 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF6 1953 hgsc.bcm.edu;ucsc.edu 37 1 3424401 3424402 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF8 1954 broad.mit.edu 37 19 42860310 42860310 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEGF8 1954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42848626 42848626 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF8 1954 hgsc.bcm.edu 37 19 42830478 42830478 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF8 1954 hgsc.bcm.edu 37 19 42840365 42840365 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MEGF8 1954 hgsc.bcm.edu;ucsc.edu 37 19 42882619 42882619 + 3'UTR SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MEGF9 1955 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123384993 123384993 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEGF9 1955 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123476115 123476115 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEI1 150365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42172238 42172238 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEI1 150365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42180387 42180387 + Silent SNP T T C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEI1 150365 hgsc.bcm.edu 37 22 42180689 42180690 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEIS1 4211 broad.mit.edu 37 2 66667009 66667009 + Nonsense_Mutation SNP G T T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEIS1 4211 hgsc.bcm.edu 37 2 66739382 66739383 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEIS2 4212 broad.mit.edu 37 15 37391375 37391376 + Intron DEL CA - - rs147531180 by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEIS3 56917 hgsc.bcm.edu 37 19 47912501 47912501 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MELK 9833 broad.mit.edu 37 9 36665415 36665415 + Silent SNP A G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEMO1 51072 broad.mit.edu 37 2 32093458 32093458 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEMO1 51072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32117195 32117195 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEN1 4221 broad.mit.edu 37 11 64571721 64571721 + 3'UTR SNP G A A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEN1 4221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64573234 64573234 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEN1 4221 hgsc.bcm.edu;ucsc.edu 37 11 64577153 64577153 + Silent SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID MEOX1 4222 broad.mit.edu 37 17 41719182 41719182 + 3'UTR SNP C G G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEOX1 4222 broad.mit.edu;hgsc.bcm.edu 37 17 41738797 41738797 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEP1A 4224 hgsc.bcm.edu 37 6 46787323 46787323 + Silent SNP A A G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MEP1B 4225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29775406 29775406 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEP1B 4225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29788192 29788192 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEPCE 56257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100031142 100031142 + Missense_Mutation SNP T T A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEPE 56955 broad.mit.edu;hgsc.bcm.edu 37 4 88755860 88755860 + 5'UTR SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEPE 56955 hgsc.bcm.edu;ucsc.edu 37 4 88755919 88755919 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MERTK 10461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 112767558 112767559 + Frame_Shift_Ins INS - - A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MESDC1 59274 broad.mit.edu 37 15 81296130 81296130 + 3'UTR DEL T - - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MESDC2 23184 hgsc.bcm.edu;ucsc.edu 37 15 81274514 81274514 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MESP1 55897 broad.mit.edu;hgsc.bcm.edu 37 15 90293454 90293454 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MESP2 145873 broad.mit.edu 37 15 90321551 90321551 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116339927 116339927 + Silent SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116380121 116380121 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116411638 116411638 + Silent SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116415115 116415115 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116422132 116422132 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METAP1 23173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99955422 99955422 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METAP2 10988 broad.mit.edu 37 12 95867897 95867897 + 5'UTR SNP T G G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METRNL 284207 broad.mit.edu 37 17 81042716 81042716 + Intron SNP C A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METRNL 284207 broad.mit.edu 37 17 81052554 81052554 + 3'UTR DEL T - - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METRNL 284207 hgsc.bcm.edu 37 17 81043052 81043053 + Frame_Shift_Ins INS - - G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METT10D 0 broad.mit.edu 37 17 2323260 2323260 + 3'UTR SNP G T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METT10D 0 broad.mit.edu;hgsc.bcm.edu 37 17 2323872 2323872 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METT10D 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2323880 2323880 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METT11D1 0 broad.mit.edu;hgsc.bcm.edu 37 14 21461234 21461234 + Intron SNP A A C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METT11D1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21461323 21461323 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METT5D1 0 hgsc.bcm.edu 37 11 28352293 28352293 + Silent SNP T T C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID METT5D1 0 hgsc.bcm.edu;ucsc.edu 37 11 28349621 28349621 + Intron SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID METTL10 399818 broad.mit.edu 37 10 126480432 126480433 + 5'UTR INS - C C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL10 399818 hgsc.bcm.edu;ucsc.edu 37 10 126477708 126477708 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID METTL11A 0 broad.mit.edu;hgsc.bcm.edu 37 9 132394938 132394938 + 5'UTR SNP G G C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL11B 149281 hgsc.bcm.edu 37 1 170129707 170129707 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID METTL12 751071 broad.mit.edu 37 11 62433322 62433322 + 5'UTR SNP T C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL13 51603 broad.mit.edu;hgsc.bcm.edu 37 1 171765592 171765592 + Intron SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL13 51603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171753287 171753287 + Silent SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL13 51603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171756896 171756896 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL13 51603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171756920 171756920 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL14 57721 broad.mit.edu;hgsc.bcm.edu 37 4 119631494 119631494 + 3'UTR SNP C C A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL14 57721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 119626961 119626961 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL2A 339175 hgsc.bcm.edu 37 17 60501288 60501288 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID METTL3 56339 broad.mit.edu 37 14 21969662 21969662 + Intron DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL3 56339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21966492 21966492 + Silent SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL3 56339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21967449 21967449 + Splice_Site SNP C C G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL3 56339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21967473 21967473 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL3 56339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21967512 21967512 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL3 56339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21967647 21967647 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL4 64863 broad.mit.edu 37 18 2538952 2538952 + 3'UTR SNP G C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL4 64863 broad.mit.edu 37 18 2538990 2538990 + 3'UTR SNP A T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL4 64863 broad.mit.edu;hgsc.bcm.edu 37 18 2567241 2567241 + 5'UTR SNP G G A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL4 64863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2547514 2547514 + Nonsense_Mutation SNP G G C novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL4 64863 hgsc.bcm.edu 37 18 2555005 2555005 + Silent SNP C C T rs61730027 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID METTL7A 25840 broad.mit.edu 37 12 51318598 51318598 + 5'UTR SNP C T T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL7A 25840 broad.mit.edu 37 12 51324058 51324058 + 3'UTR DEL T - - novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL7A 25840 broad.mit.edu 37 12 51324058 51324058 + 3'UTR DEL T - - novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL7A 25840 broad.mit.edu 37 12 51324058 51324058 + 3'UTR DEL T - - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx METTL7B 196410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56076036 56076036 + Silent SNP G G A rs144071589 unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL9 51108 broad.mit.edu;hgsc.bcm.edu 37 16 21611123 21611123 + Silent SNP G G C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq METTL9 51108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21666709 21666709 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEX3A 92312 broad.mit.edu 37 1 156046832 156046832 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEX3A 92312 broad.mit.edu;ucsc.edu 37 1 156047265 156047265 + Silent SNP G A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEX3B 84206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 82336581 82336581 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEX3C 51320 broad.mit.edu 37 18 48702651 48702651 + 3'UTR DEL G - - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEX3C 51320 broad.mit.edu 37 18 48702708 48702709 + 3'UTR DEL TA - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MEX3C 51320 hgsc.bcm.edu 37 18 48723146 48723154 + In_Frame_Del DEL GCCGCCGCG GCCGCCGCG - rs147438518 bycluster;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GCCGCCGCG GCCGCCGCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MEX3C 51320 hgsc.bcm.edu;ucsc.edu 37 18 48703023 48703023 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFAP2 4237 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17303611 17303611 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFAP2 4237 hgsc.bcm.edu;ucsc.edu 37 1 17304699 17304699 + Intron SNP G G A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFAP3 4238 broad.mit.edu 37 5 153429206 153429206 + 5'UTR SNP T G G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFAP3 4238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153432673 153432673 + Silent SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFAP3L 9848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 170913100 170913100 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFAP3L 9848 hgsc.bcm.edu;ucsc.edu 37 4 170926995 170926995 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFAP4 4239 hgsc.bcm.edu 37 17 19289709 19289709 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFAP4 4239 hgsc.bcm.edu;ucsc.edu 37 17 19288733 19288734 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFAP5 8076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 8802129 8802129 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFF 56947 broad.mit.edu 37 2 228222186 228222186 + 3'UTR DEL A - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFGE8 4240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89449935 89449935 + Silent SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFHAS1 9258 broad.mit.edu 37 8 8642675 8642675 + 3'UTR DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFHAS1 9258 broad.mit.edu 37 8 8749266 8749266 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8747924 8747924 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8748228 8748228 + Silent SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8748320 8748320 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8749927 8749927 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFI2 4241 broad.mit.edu 37 3 196733606 196733606 + Silent SNP G T T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFI2 4241 broad.mit.edu;hgsc.bcm.edu 37 3 196753618 196753618 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFN1 55669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 179096586 179096586 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFN2 9927 hgsc.bcm.edu 37 1 12066592 12066592 + Intron SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFRP 83552 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119212284 119212284 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD10 10227 hgsc.bcm.edu 37 4 2934201 2934201 + Silent SNP C C G novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFSD10 10227 hgsc.bcm.edu;ucsc.edu 37 4 2933580 2933580 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFSD10 10227 hgsc.bcm.edu;ucsc.edu 37 4 2935293 2935293 + Splice_Site SNP C C A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFSD11 79157 broad.mit.edu 37 17 74734379 74734379 + 5'UTR SNP C T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFSD1 64747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 158523240 158523240 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD1 64747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 158545109 158545109 + Silent SNP A A T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD1 64747 hgsc.bcm.edu 37 3 158524889 158524889 + Intron SNP A A T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFSD2A 84879 broad.mit.edu;hgsc.bcm.edu 37 1 40434358 40434358 + Silent SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD2A 84879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40430907 40430907 + Silent SNP C C T rs115805986 bycluster;by1000genomes TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD2A 84879 broad.mit.edu;ucsc.edu 37 1 40435189 40435189 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MFSD3 113655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145735861 145735861 + Silent SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD5 84975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53647588 53647588 + Silent SNP C C G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MFSD5 84975 hgsc.bcm.edu 37 12 53647204 53647204 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MFSD6 54842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191301590 191301590 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD6 54842 hgsc.bcm.edu;ucsc.edu 37 2 191334581 191334581 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD6L 162387 broad.mit.edu;hgsc.bcm.edu 37 17 8702333 8702333 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD6L 162387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8701942 8701942 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD6L 162387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8702126 8702126 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD6L 162387 hgsc.bcm.edu 37 17 8701341 8701341 + Silent SNP G G A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MFSD7 84179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 677418 677418 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD7 84179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 680061 680061 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MFSD9 84804 hgsc.bcm.edu 37 2 103353153 103353153 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGA 23269 broad.mit.edu 37 15 42042855 42042855 + 3'UTR SNP T G G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGA 23269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42035185 42035185 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGA 23269 hgsc.bcm.edu;ucsc.edu 37 15 41961876 41961876 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGA 23269 hgsc.bcm.edu;ucsc.edu 37 15 41988561 41988561 + Silent SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID MGA 23269 hgsc.bcm.edu;ucsc.edu 37 15 42003437 42003437 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAM 8972 broad.mit.edu 37 7 141762388 141762388 + Silent SNP C T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGAM 8972 broad.mit.edu;hgsc.bcm.edu 37 7 141770916 141770916 + Intron SNP A A T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAM 8972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 141752123 141752123 + Silent SNP C C A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAM 8972 hgsc.bcm.edu 37 7 141752215 141752215 + Missense_Mutation SNP A A C rs116536012 bycluster;byfrequency;by1000genomes TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGAM 8972 hgsc.bcm.edu 37 7 141760115 141760115 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAM 8972 hgsc.bcm.edu;ucsc.edu 37 7 141752215 141752215 + Missense_Mutation SNP A A C rs116536012 bycluster;byfrequency;by1000genomes TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGAM 8972 hgsc.bcm.edu;ucsc.edu 37 7 141755356 141755356 + Splice_Site SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGAT2 4247 broad.mit.edu 37 14 50087975 50087976 + 5'UTR INS - T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGAT3 4248 hgsc.bcm.edu 37 22 39883403 39883403 + Silent SNP G G C novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGAT4A 11320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99256416 99256416 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT4A 11320 broad.mit.edu;ucsc.edu 37 2 99242002 99242002 + 3'UTR SNP G T T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGAT4A 11320 broad.mit.edu;ucsc.edu 37 2 99272830 99272830 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGAT4B 11282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179225513 179225513 + Silent SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT4B 11282 broad.mit.edu;ucsc.edu 37 5 179229049 179229049 + Intron SNP T C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGAT4B 11282 hgsc.bcm.edu 37 5 179228972 179228972 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGAT4C 25834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 86373140 86373140 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT4C 25834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 86383258 86383258 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT5 4249 broad.mit.edu;hgsc.bcm.edu 37 2 135076310 135076310 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT5 4249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135012082 135012082 + Silent SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT5 4249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135107382 135107382 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGAT5 4249 hgsc.bcm.edu;ucsc.edu 37 2 135160678 135160678 + Silent SNP G G A rs148494322 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGAT5B 146664 broad.mit.edu 37 17 74944960 74944961 + 3'UTR INS - G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGAT5B 146664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74936814 74936814 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGC29506 0 broad.mit.edu 37 5 138724269 138724269 + Nonsense_Mutation SNP C T T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGC42105 0 hgsc.bcm.edu 37 5 43280310 43280310 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGC70857 0 broad.mit.edu 37 8 145751848 145751848 + 3'UTR DEL C - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGC87042 0 broad.mit.edu;hgsc.bcm.edu 37 7 22534457 22534457 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGEA5 10724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103557823 103557823 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGEA5 10724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103565869 103565869 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGEA5 10724 hgsc.bcm.edu 37 10 103547234 103547234 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGLL 11343 broad.mit.edu 37 3 127410961 127410961 + 3'UTR SNP C A A rs73859251 unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGLL 11343 hgsc.bcm.edu;ucsc.edu 37 3 127541110 127541110 + Intron SNP G G C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGRN1 23295 broad.mit.edu 37 16 4727555 4727555 + Silent SNP G A A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MGRN1 23295 hgsc.bcm.edu 37 16 4721421 4721421 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MGST3 4259 hgsc.bcm.edu 37 1 165624711 165624712 + Frame_Shift_Ins INS - - T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MGST3 4259 hgsc.bcm.edu 37 1 165624711 165624712 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIA3 375056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222794531 222794531 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIA3 375056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222826645 222826645 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIA3 375056 hgsc.bcm.edu;ucsc.edu 37 1 222802075 222802075 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIA3 375056 hgsc.bcm.edu;ucsc.edu 37 1 222826679 222826679 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIA3 375056 hgsc.bcm.edu;ucsc.edu 37 1 222832875 222832875 + Intron SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICA 100507436 broad.mit.edu;ucsc.edu 37 6 31379000 31379000 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICA 100507436 hgsc.bcm.edu 37 6 31380161 31380161 + Frame_Shift_Del DEL G G - rs147667828 by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL1 64780 broad.mit.edu 37 6 109771288 109771288 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICAL1 64780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 109769530 109769530 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL1 64780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 109774523 109774523 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL1 64780 hgsc.bcm.edu;ucsc.edu 37 6 109771217 109771217 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL2 9645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 12278355 12278355 + Silent SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL2 9645 hgsc.bcm.edu 37 11 12243299 12243299 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL2 9645 hgsc.bcm.edu 37 11 12246315 12246315 + Missense_Mutation SNP C C T rs190895714 by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL2 9645 hgsc.bcm.edu;ucsc.edu 37 11 12225972 12225972 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL3 57553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18368682 18368682 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL3 57553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18376628 18376628 + Silent SNP G G A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICAL3 57553 broad.mit.edu;ucsc.edu 37 22 18382309 18382309 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICAL3 57553 hgsc.bcm.edu 37 22 18304890 18304890 + Silent SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL3 57553 hgsc.bcm.edu 37 22 18389489 18389489 + Silent SNP C C T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL3 57553 hgsc.bcm.edu 37 22 18389489 18389489 + Silent SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL3 57553 hgsc.bcm.edu;ucsc.edu 37 22 18362165 18362165 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICAL3 57553 hgsc.bcm.edu;ucsc.edu 37 22 18382260 18382260 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICALCL 84953 broad.mit.edu 37 11 12316358 12316358 + Silent SNP T C C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALCL 84953 broad.mit.edu;hgsc.bcm.edu 37 11 12316279 12316279 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICALCL 84953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 12315780 12315780 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICALCL 84953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 12376331 12376331 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICALCL 84953 broad.mit.edu;ucsc.edu 37 11 12316166 12316166 + Silent SNP T G G novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALL2 79778 broad.mit.edu 37 7 1487214 1487214 + Silent SNP C T T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALL2 79778 broad.mit.edu 37 7 1491334 1491334 + Intron DEL G - - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALL2 79778 broad.mit.edu 37 7 1498817 1498818 + Intron INS - A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALL2 79778 broad.mit.edu;hgsc.bcm.edu 37 7 1489845 1489845 + Intron SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICALL2 79778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 1489860 1489860 + Intron SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MICALL2 79778 broad.mit.edu;ucsc.edu 37 7 1474748 1474748 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALL2 79778 broad.mit.edu;ucsc.edu 37 7 1478560 1478560 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MICALL2 79778 hgsc.bcm.edu 37 7 1480280 1480280 + Silent SNP C C T rs58636013 bycluster;byfrequency;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICALL2 79778 hgsc.bcm.edu 37 7 1480286 1480286 + Silent SNP G G A rs61741872 bycluster;byfrequency;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MICB 4277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31475252 31475252 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MID1 4281 broad.mit.edu;hgsc.bcm.edu 37 X 10437719 10437719 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MID1 4281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 10427708 10427708 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MID1IP1 58526 broad.mit.edu 37 X 38664279 38664279 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MID1IP1 58526 broad.mit.edu 37 X 38664818 38664818 + 3'UTR DEL T - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIDN 90007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1257108 1257108 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIER1 57708 broad.mit.edu 37 1 67396021 67396021 + Intron SNP G C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIER1 57708 broad.mit.edu 37 1 67412098 67412098 + Intron SNP A T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIER1 57708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67450321 67450321 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIER1 57708 hgsc.bcm.edu 37 1 67394620 67394620 + Intron SNP T T A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIER1 57708 hgsc.bcm.edu 37 1 67405743 67405743 + Intron SNP T T G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIER1 57708 hgsc.bcm.edu;ucsc.edu 37 1 67442342 67442342 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIER2 54531 hgsc.bcm.edu 37 19 306686 306686 + 3'UTR SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIIP 60672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12081816 12081816 + Silent SNP G G T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MINA 84864 broad.mit.edu 37 3 97661478 97661478 + 3'UTR SNP T A A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MINA 84864 broad.mit.edu 37 3 97661535 97661535 + 3'UTR SNP A G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MINA 84864 broad.mit.edu 37 3 97664021 97664021 + 3'UTR DEL A - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MINK1 50488 broad.mit.edu;hgsc.bcm.edu 37 17 4794820 4794820 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MIOS 54468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 7636022 7636022 + Silent SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIOS 54468 hgsc.bcm.edu;ucsc.edu 37 7 7612146 7612146 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIOS 54468 hgsc.bcm.edu;ucsc.edu 37 7 7635995 7635995 + Silent SNP G G T rs115055951 byfrequency;by1000genomes;alternate_allele TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIOX 55586 broad.mit.edu 37 22 50926751 50926751 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIOX 55586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50927866 50927867 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIOX 55586 hgsc.bcm.edu;ucsc.edu 37 22 50927640 50927640 + Intron SNP C C G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIPEP 4285 hgsc.bcm.edu 37 13 24411774 24411774 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIPOL1 145282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 37777677 37777677 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR1185-1 100302157 hgsc.bcm.edu;ucsc.edu 37 14 101509407 101509407 + downstream SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR1250 100302229 broad.mit.edu 37 17 79107042 79107042 + RNA SNP A T T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR1256 100302155 hgsc.bcm.edu;ucsc.edu 37 10 74269155 74269155 + RNA SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR125B1 406911 broad.mit.edu 37 11 121970479 121970479 + RNA SNP C A A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR1293 100302220 broad.mit.edu 37 12 50627995 50627995 + RNA DEL T - - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR1293 100302220 broad.mit.edu 37 12 50627995 50627995 + RNA DEL T - - novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR1296 100302150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 65132766 65132766 + RNA SNP C C G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR1297 100302187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 54886172 54886172 + RNA SNP T T A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR1298 100302153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 113949683 113949683 + RNA SNP G G T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR1298 100302153 hgsc.bcm.edu 37 X 113949683 113949683 + RNA SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR1323 100302255 hgsc.bcm.edu 37 19 54175285 54175285 + NCSD SNP G G T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR137 406928 hgsc.bcm.edu 37 1 98511733 98511733 + upstream SNP G G A rs75853046 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR181A1(dist=74061) 0 hgsc.bcm.edu;ucsc.edu 37 1 198902343 198902343 + IGR SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR181B1 406955 hgsc.bcm.edu;ucsc.edu 37 1 198828108 198828108 + RNA SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR181D 574457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 13985689 13985689 + RNA SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR182 406958 hgsc.bcm.edu 37 7 129410227 129410227 + NCSD SNP C C T rs76481776 bycluster;byfrequency;by1000genomes TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR1826 0 hgsc.bcm.edu 37 16 33965507 33965507 + 5'Promoter SNP G G C rs74614199 bycluster;byfrequency TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR1826 0 hgsc.bcm.edu 37 16 33965560 33965560 + NCSD SNP T T A rs75603223 bycluster TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR192 406967 broad.mit.edu 37 11 64658636 64658636 + RNA SNP A G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR193B 574455 hgsc.bcm.edu 37 16 14397884 14397884 + NCSD SNP C C G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR196A2 406973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54385596 54385596 + RNA SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR199A2 406977 broad.mit.edu;hgsc.bcm.edu 37 1 172113783 172113783 + RNA SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR204 406987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73424944 73424944 + RNA SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR208B 100126336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23887232 23887232 + RNA SNP G G T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR218-1 407000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 20529994 20529994 + RNA SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR222 407007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 45606471 45606471 + RNA SNP C C T rs72631825 byfrequency TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR299 407023 broad.mit.edu 37 14 101490139 101490139 + RNA SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR30C1 407031 hgsc.bcm.edu 37 1 41222991 41222991 + RNA SNP C C G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR30C2 407032 hgsc.bcm.edu;ucsc.edu 37 6 72086755 72086755 + 5'Promoter SNP A A G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR3134(dist=6316) 0 hgsc.bcm.edu 37 9 115118861 115118861 + IGR SNP C C A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR3184 100423003 broad.mit.edu;hgsc.bcm.edu 37 17 28444131 28444131 + RNA SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR384 494333 broad.mit.edu 37 X 76139785 76139785 + RNA SNP A G G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR4255(dist=121286) 0 hgsc.bcm.edu;ucsc.edu 37 1 37748521 37748521 + IGR SNP G G T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR429 554210 broad.mit.edu;ucsc.edu 37 1 1104459 1104459 + RNA SNP A G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR450A1 554214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133674458 133674458 + RNA SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR495 574453 hgsc.bcm.edu 37 14 101500159 101500159 + NCSD SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR515-1 574462 broad.mit.edu 37 19 54182305 54182305 + RNA SNP C T T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR518E 574487 hgsc.bcm.edu 37 19 54233149 54233149 + NCSD SNP C C A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR519C 574466 broad.mit.edu;hgsc.bcm.edu 37 19 54189764 54189764 + RNA SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR519C 574466 hgsc.bcm.edu 37 19 54189823 54189823 + 3'Promoter SNP C C T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR520D 574482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54223429 54223429 + RNA SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR544 0 broad.mit.edu 37 14 101515030 101515030 + RNA SNP T G G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR548F1 100302192 broad.mit.edu;hgsc.bcm.edu 37 1 186281526 186281526 + RNA SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548F1 100302192 broad.mit.edu;hgsc.bcm.edu 37 1 186281553 186281553 + RNA SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548H3 100302287 broad.mit.edu;hgsc.bcm.edu 37 6 97587192 97587192 + RNA SNP A A C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548N 100302152 broad.mit.edu;hgsc.bcm.edu 37 2 179403617 179403617 + RNA SNP A A C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548N 100302152 hgsc.bcm.edu 37 2 179321446 179321446 + RNA SNP A A G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548N 100302152 hgsc.bcm.edu 37 2 179337645 179337645 + RNA SNP A A T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548N 100302152 hgsc.bcm.edu;ucsc.edu 37 2 179320446 179320446 + RNA SNP T T G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR548N 100302152 hgsc.bcm.edu;ucsc.edu 37 2 179344242 179344242 + RNA SNP C C G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548N 100302152 hgsc.bcm.edu;ucsc.edu 37 2 179350870 179350870 + RNA SNP G G C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR548N 100302152 hgsc.bcm.edu;ucsc.edu 37 2 179375304 179375304 + RNA SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR553 693138 hgsc.bcm.edu;ucsc.edu 37 1 100746822 100746822 + RNA SNP G G C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR578 693163 hgsc.bcm.edu 37 4 166307408 166307408 + RNA SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR592 693177 hgsc.bcm.edu 37 7 126698160 126698160 + RNA SNP A A G novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR593 693178 broad.mit.edu;ucsc.edu 37 7 127721977 127721977 + RNA SNP A G G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR598 693183 hgsc.bcm.edu;ucsc.edu 37 8 10892793 10892793 + RNA SNP C C A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR601 693186 hgsc.bcm.edu;ucsc.edu 37 9 126164863 126164863 + RNA SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR650(dist=58147) 0 hgsc.bcm.edu;ucsc.edu 37 22 23223512 23223512 + IGR SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR659 724029 hgsc.bcm.edu 37 22 38243727 38243727 + NCSD SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR663B 100313824 broad.mit.edu 37 2 133014651 133014652 + RNA INS - C C rs111708138 unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015476 133015476 + 5'Flank SNP A T T rs437455 bycluster TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015485 133015485 + 5'Flank SNP C A A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015485 133015485 + 5'Flank SNP C A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015485 133015485 + 5'Flank SNP C A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015485 133015485 + 5'Flank SNP C A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015512 133015512 + 5'Flank SNP C T T rs75932541 byfrequency TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015519 133015519 + 5'Flank SNP G T T rs77644836 bycluster;byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015522 133015522 + 5'Flank SNP C A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR663B 100313824 broad.mit.edu 37 2 133015522 133015522 + 5'Flank SNP C A A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MIR665 100126315 broad.mit.edu;hgsc.bcm.edu 37 14 101341381 101341381 + RNA SNP G G T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR766 768218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118780702 118780702 + RNA SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIR873 100126316 hgsc.bcm.edu 37 9 28888889 28888889 + NCSD SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR873 100126316 hgsc.bcm.edu 37 9 28888889 28888889 + NCSD SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR873 100126316 hgsc.bcm.edu 37 9 28888896 28888896 + NCSD SNP C C G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR892B 100126307 hgsc.bcm.edu 37 X 145078723 145078723 + RNA SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIR96;MIR183 0 hgsc.bcm.edu;ucsc.edu 37 7 129414737 129414737 + upstream;downstream SNP G G A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MIRLET7D 406886 hgsc.bcm.edu;ucsc.edu 37 9 96941189 96941189 + NCSD SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MIS12 79003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5392574 5392574 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MITF 4286 broad.mit.edu;hgsc.bcm.edu 37 3 69987112 69987112 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MITF 4286 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 69928509 69928509 + Missense_Mutation SNP C C T rs190215588 by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129906122 129906122 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129906188 129906188 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129906582 129906582 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129911780 129911780 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129913433 129913433 + Silent SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129913557 129913557 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKI67 4288 hgsc.bcm.edu 37 10 129903530 129903530 + Missense_Mutation SNP C C T rs139058203 unknown;alternate_allele TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MKI67IP 84365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122488643 122488643 + Silent SNP G G A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKKS 8195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10393381 10393381 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKKS 8195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10393658 10393658 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKKS 8195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10393730 10393730 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKKS 8195 hgsc.bcm.edu;ucsc.edu 37 20 10393758 10393758 + Silent SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MKL1 57591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40831553 40831553 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKL1 57591 hgsc.bcm.edu;ucsc.edu 37 22 40825689 40825689 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MKL2 57496 broad.mit.edu 37 16 14234406 14234406 + 5'UTR SNP T G G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKL2 57496 broad.mit.edu 37 16 14342734 14342734 + Intron SNP A T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKL2 57496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14328057 14328057 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKL2 57496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14334311 14334311 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKL2 57496 broad.mit.edu;ucsc.edu 37 16 14304164 14304164 + Silent SNP A G G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKL2 57496 broad.mit.edu;ucsc.edu 37 16 14355166 14355166 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKLN1 4289 broad.mit.edu 37 7 131163553 131163553 + Intron SNP G A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKLN1 4289 hgsc.bcm.edu;ucsc.edu 37 7 131122679 131122679 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKLN1 4289 hgsc.bcm.edu;ucsc.edu 37 7 131147981 131147982 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MKNK1 8569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47028508 47028508 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKNK2 2872 broad.mit.edu 37 19 2039435 2039435 + 3'UTR DEL A - - rs112116537 unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKNK2 2872 broad.mit.edu;hgsc.bcm.edu 37 19 2037842 2037842 + 3'UTR SNP A A C rs78772412 bycluster;byfrequency;by1000genomes TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKNK2 2872 broad.mit.edu;hgsc.bcm.edu 37 19 2039896 2039896 + Intron SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKNK2 2872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2041090 2041090 + Silent SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKNK2 2872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2043146 2043146 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKRN1 23608 broad.mit.edu;hgsc.bcm.edu 37 7 140155662 140155662 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKRN3 7681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 23811293 23811293 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKRN3 7681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 23811752 23811752 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKRN3 7681 broad.mit.edu;ucsc.edu 37 15 23811842 23811842 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MKS1 54903 broad.mit.edu;hgsc.bcm.edu 37 17 56283522 56283522 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKS1 54903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56285343 56285343 + Silent SNP A A G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MKS1 54903 hgsc.bcm.edu;ucsc.edu 37 17 56283700 56283700 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MKX 283078 broad.mit.edu 37 10 27962806 27962806 + 3'UTR DEL A - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLANA 2315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5897599 5897599 + Silent SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLANA 2315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5897600 5897600 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLC1 23209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50518347 50518347 + Silent SNP G G A rs121908343 unknown;alternate_allele TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLC1 23209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50518782 50518782 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLEC 9761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121132708 121132708 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLF1 4291 hgsc.bcm.edu;ucsc.edu 37 3 158289081 158289081 + 5'UTR SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLF2 8079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6859423 6859423 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLF2 8079 hgsc.bcm.edu;ucsc.edu 37 12 6859057 6859057 + Silent SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLH1 4292 hgsc.bcm.edu;ucsc.edu 37 3 37067407 37067407 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID MLH3 27030 broad.mit.edu 37 14 75483428 75483428 + 3'UTR DEL A - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLH3 27030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75513873 75513873 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLH3 27030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75513898 75513898 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLH3 27030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75515759 75515759 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLH3 27030 hgsc.bcm.edu;ucsc.edu 37 14 75513395 75513396 + Frame_Shift_Ins INS - - AT novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL2 8085 broad.mit.edu 37 12 49415510 49415510 + 3'UTR SNP A G G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLL2 8085 broad.mit.edu 37 12 49427700 49427700 + Frame_Shift_Del DEL C - - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLL2 8085 broad.mit.edu;hgsc.bcm.edu 37 12 49444844 49444844 + Nonsense_Mutation SNP G G T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49420872 49420872 + Silent SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49422725 49422725 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49425039 49425039 + Silent SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49427164 49427164 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49436557 49436557 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49436558 49436558 + Silent SNP G G C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49436587 49436587 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49440459 49440459 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49442951 49442951 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49443747 49443747 + Silent SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49444338 49444338 + Silent SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL2 8085 broad.mit.edu;ucsc.edu 37 12 49447312 49447312 + Silent SNP G A A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLL2 8085 broad.mit.edu;ucsc.edu 37 12 49447313 49447313 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina GAIIx MLL2 8085 hgsc.bcm.edu 37 12 49427984 49427984 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL2 8085 hgsc.bcm.edu 37 12 49433132 49433132 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL2 8085 hgsc.bcm.edu 37 12 49442448 49442448 + Silent SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL2 8085 hgsc.bcm.edu 37 12 49442448 49442448 + Silent SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL2 8085 hgsc.bcm.edu 37 12 49442450 49442450 + Missense_Mutation SNP G G T rs1368572 bycluster;alternate_allele TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL2 8085 hgsc.bcm.edu 37 12 49448463 49448463 + Missense_Mutation SNP C C T rs55865069 bycluster;byfrequency;by1000genomes TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL2 8085 hgsc.bcm.edu 37 12 49448367 49448367 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4848-01A-01W-1359-10 TCGA-B0-4848-11A-01W-1359-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq MLL3 58508 broad.mit.edu 37 7 151834021 151834022 + Intron DEL AA - - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 AA AA AA - AA AA Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx MLL3 58508 broad.mit.edu 37 7 151962258 151962258 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151851228 151851228 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151860719 151860719 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151873357 151873357 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151873651 151873651 + Missense_Mutation SNP G G A rs187761353 by1000genomes TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151877175 151877175 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151877902 151877902 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151878457 151878457 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151879304 151879304 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL3 58508 hgsc.bcm.edu 37 7 151921164 151921167 + Frame_Shift_Del DEL AGGA AGGA - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 AGGA AGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL3 58508 hgsc.bcm.edu 37 7 151945071 151945072 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLL3 58508 hgsc.bcm.edu;ucsc.edu 37 7 151836874 151836875 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 CC CC CC - CC CC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MLL3 58508 hgsc.bcm.edu;ucsc.edu 37 7 151848093 151848093 + Splice_Site SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID MLL3 58508 hgsc.bcm.edu;ucsc.edu 37 7 151882665 151882665 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MLL3 58508 hgsc.bcm.edu;ucsc.edu 37 7 152012275 152012275 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL 4297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118352713 118352713 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL 4297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118370617 118370617 + Silent SNP T T A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL 4297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118375278 118375278 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL 4297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118390456 118390456 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL 4297 hgsc.bcm.edu;ucsc.edu 37 11 118348895 118348896 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL 4297 hgsc.bcm.edu;ucsc.edu 37 11 118365488 118365488 + Intron SNP T T A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL 4297 hgsc.bcm.edu;ucsc.edu 37 11 118372561 118372561 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL 4297 hgsc.bcm.edu;ucsc.edu 37 11 118375051 118375051 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL4 9757 broad.mit.edu 37 19 36211503 36211503 + Silent SNP A C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLL4 9757 broad.mit.edu 37 19 36224005 36224006 + Frame_Shift_Ins INS - C C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLL4 9757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36211567 36211567 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL4 9757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36219945 36219945 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MLL4 9757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36221724 36221724 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104719411 104719411 + Splice_Site SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104749515 104749515 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104752397 104752397 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104752966 104752966 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104753209 104753209 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLL5 55904 hgsc.bcm.edu;ucsc.edu 37 7 104748211 104748211 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT10 8028 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22002761 22002761 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT10 8028 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22023041 22023041 + Silent SNP A A C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT10 8028 hgsc.bcm.edu 37 10 21875215 21875215 + Splice_Region SNP T T G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLLT10 8028 hgsc.bcm.edu 37 10 21875219 21875219 + Splice_Region SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLLT1 4298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6218035 6218035 + Silent SNP C C T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT1 4298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6270745 6270745 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT3 4300 broad.mit.edu 37 9 20346391 20346391 + 3'UTR SNP A C C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20346391 20346391 + 3'UTR SNP A C C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20346392 20346392 + 3'UTR SNP C A A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20346394 20346394 + 3'UTR SNP A C C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20346394 20346394 + 3'UTR SNP A C C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20346394 20346394 + 3'UTR SNP A C C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20414343 20414343 + Silent SNP A G G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20414343 20414343 + Silent SNP A G G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 broad.mit.edu 37 9 20414379 20414379 + Silent SNP G A A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT3 4300 hgsc.bcm.edu 37 9 20346391 20346391 + 3'UTR SNP A A C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT3 4300 hgsc.bcm.edu 37 9 20346393 20346393 + 3'UTR SNP C C A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168297599 168297599 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168344080 168344080 + Splice_Site SNP A A G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168344647 168344647 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168352940 168352940 + Intron SNP T T C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168363200 168363200 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLLT4 4301 broad.mit.edu;ucsc.edu 37 6 168349093 168349093 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT4 4301 hgsc.bcm.edu 37 6 168271097 168271097 + Silent SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLLT4 4301 hgsc.bcm.edu 37 6 168273013 168273013 + Silent SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLLT6 4302 broad.mit.edu 37 17 36884257 36884257 + 3'UTR DEL A - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLLT6 4302 hgsc.bcm.edu 37 17 36875827 36875827 + Missense_Mutation SNP T T C rs62620198 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLPH 79083 broad.mit.edu 37 2 238463513 238463513 + 3'UTR DEL G - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLPH 79083 broad.mit.edu 37 2 238463515 238463515 + 3'UTR DEL G - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLPH 79083 hgsc.bcm.edu 37 2 238455269 238455270 + Frame_Shift_Ins INS - - G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLST8 64223 broad.mit.edu 37 16 2255805 2255805 + Intron DEL G - - rs139827363 bycluster;by1000genomes TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLST8 64223 broad.mit.edu 37 16 2255805 2255805 + Intron DEL G - - rs139827363 bycluster;by1000genomes TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLST8 64223 broad.mit.edu 37 16 2255805 2255805 + Intron DEL G - - rs139827363 bycluster;by1000genomes TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLST8 64223 broad.mit.edu;hgsc.bcm.edu 37 16 2256665 2256665 + Intron SNP G G C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLX 6945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40720575 40720575 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLX 6945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40721610 40721610 + Silent SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLX 6945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40723622 40723622 + 3'UTR SNP C C T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLXIP 22877 broad.mit.edu 37 12 122618624 122618625 + Intron INS - C C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLXIP 22877 broad.mit.edu 37 12 122618624 122618625 + Intron INS - C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLXIPL 51085 broad.mit.edu 37 7 73008146 73008146 + 3'UTR SNP G T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLXIPL 51085 broad.mit.edu 37 7 73011708 73011708 + Frame_Shift_Del DEL G - - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MLXIPL 51085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73011232 73011232 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLXIPL 51085 hgsc.bcm.edu 37 7 73008676 73008676 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLXIPL 51085 hgsc.bcm.edu 37 7 73008676 73008676 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLXIPL 51085 hgsc.bcm.edu 37 7 73020298 73020298 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MLYCD 23417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 83940609 83940609 + Silent SNP G G T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MLYCD 23417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 83949048 83949048 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMAA 166785 hgsc.bcm.edu;ucsc.edu 37 4 146560425 146560425 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMAB 326625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110006594 110006594 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMACHC 25974 hgsc.bcm.edu 37 1 45966075 45966075 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMADHC 27249 broad.mit.edu 37 2 150443936 150443936 + 5'UTR DEL A - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MME 4311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154856020 154856020 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MME 4311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154856021 154856021 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MME 4311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154862150 154862150 + Silent SNP C C A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MME 4311 hgsc.bcm.edu 37 3 154898167 154898167 + Silent SNP G G A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MME 4311 hgsc.bcm.edu;ucsc.edu 37 3 154858058 154858058 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMEL1 79258 broad.mit.edu;hgsc.bcm.edu 37 1 2530196 2530196 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMEL1 79258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2541226 2541226 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMGT1 93380 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135047254 135047254 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP10 4319 hgsc.bcm.edu;ucsc.edu 37 11 102650297 102650297 + Silent SNP G G A rs140654514 bycluster;byfrequency;by1000genomes TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMP10 4319 hgsc.bcm.edu;ucsc.edu 37 11 102650395 102650395 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP11 4320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24122848 24122848 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP11 4320 hgsc.bcm.edu;ucsc.edu 37 22 24121517 24121517 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP12 4321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102736586 102736586 + Silent SNP A A C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP12 4321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102742668 102742668 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP1 4312 broad.mit.edu;hgsc.bcm.edu 37 11 102668828 102668828 + Splice_Site SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP14 4323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23310798 23310798 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP16 4325 hgsc.bcm.edu 37 8 89081733 89081734 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMP17 4326 broad.mit.edu;hgsc.bcm.edu 37 12 132329961 132329961 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP20 9313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102482517 102482517 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP21 118856 broad.mit.edu;hgsc.bcm.edu 37 10 127461203 127461203 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP2 4313 broad.mit.edu 37 16 55539451 55539451 + 3'UTR SNP C T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MMP2 4313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55519326 55519326 + Silent SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP2 4313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55519518 55519518 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP2 4313 hgsc.bcm.edu 37 16 55530885 55530885 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMP2 4313 hgsc.bcm.edu;ucsc.edu 37 16 55519658 55519658 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID MMP2 4313 hgsc.bcm.edu;ucsc.edu 37 16 55525713 55525713 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMP25 64386 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3100414 3100414 + Silent SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP25 64386 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3100517 3100517 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP27 64066 hgsc.bcm.edu;ucsc.edu 37 11 102564646 102564646 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMP27 64066 hgsc.bcm.edu;ucsc.edu 37 11 102564715 102564715 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMP28 79148 broad.mit.edu 37 17 34093633 34093633 + Silent SNP G A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MMP28 79148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34093555 34093555 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP7 4316 hgsc.bcm.edu 37 11 102394122 102394122 + Silent SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP7 4316 hgsc.bcm.edu 37 11 102401379 102401380 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP8 4317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102595498 102595498 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP8 4317 hgsc.bcm.edu;ucsc.edu 37 11 102593358 102593358 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMP9 4318 hgsc.bcm.edu;ucsc.edu 37 20 44641977 44641977 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMRN1 22915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 90874205 90874205 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMRN2 79812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 88702115 88702115 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMS19 64210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99223688 99223688 + Silent SNP A A G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMS19 64210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99229886 99229886 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MMS19 64210 hgsc.bcm.edu 37 10 99220744 99220744 + Silent SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MMS22L 253714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97702455 97702455 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MN1 4330 broad.mit.edu 37 22 28146768 28146769 + 3'UTR INS - G G rs11379447 bycluster;by1000genomes TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MN1 4330 broad.mit.edu;hgsc.bcm.edu 37 22 28146852 28146852 + 3'UTR SNP C C G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MN1 4330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 28192794 28192794 + Silent SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MN1 4330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 28192870 28192870 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MN1 4330 hgsc.bcm.edu 37 22 28146982 28146982 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MNAT1 4331 broad.mit.edu 37 14 61435200 61435200 + 3'UTR SNP G T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MNDA 4332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158812131 158812131 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MNS1 55329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56735643 56735643 + Nonsense_Mutation SNP A A C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MNT 4335 broad.mit.edu 37 17 2290068 2290068 + 3'UTR DEL A - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MNT 4335 hgsc.bcm.edu 37 17 2297567 2297567 + Intron SNP G G A rs187892048 by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MNT 4335 hgsc.bcm.edu 37 17 2297567 2297567 + Intron SNP G G A rs187892048 by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MNX1 3110 broad.mit.edu 37 7 156798268 156798268 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MNX1 3110 broad.mit.edu 37 7 156803064 156803064 + 5'UTR SNP G A A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOAP1 64112 broad.mit.edu 37 14 93649475 93649475 + 3'UTR SNP G T T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOAP1 64112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93650048 93650050 + In_Frame_Del DEL TTC TTC - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOB2 81532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1491652 1491652 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOB2 81532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1492592 1492592 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOBKL2A 0 broad.mit.edu;hgsc.bcm.edu 37 19 2078599 2078599 + 5'UTR SNP C C G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOBKL2B 0 broad.mit.edu 37 9 27327430 27327430 + 3'UTR DEL A - - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOBKL2B 0 broad.mit.edu 37 9 27327549 27327550 + 3'UTR DEL CA - - rs143901988 by1000genomes TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOBKL2B 0 hgsc.bcm.edu;ucsc.edu 37 9 27359175 27359175 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOBKL2C 0 broad.mit.edu 37 1 47075867 47075867 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOBKL3 0 hgsc.bcm.edu 37 2 198380863 198380863 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCOS 55034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33785102 33785102 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOCOS 55034 hgsc.bcm.edu 37 18 33793366 33793366 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCOS 55034 hgsc.bcm.edu 37 18 33848514 33848514 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCOS 55034 hgsc.bcm.edu 37 18 33848526 33848526 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCOS 55034 hgsc.bcm.edu 37 18 33848526 33848526 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCS1 4337 hgsc.bcm.edu 37 6 39893450 39893450 + Silent SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCS1 4337 hgsc.bcm.edu 37 6 39895231 39895231 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOCS1 4337 hgsc.bcm.edu 37 6 39895285 39895285 + Silent SNP G G T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOCS2 4338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 52404436 52404436 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOCS3 27304 broad.mit.edu 37 20 49575435 49575435 + Frame_Shift_Del DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOCS3 27304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49576093 49576093 + Silent SNP C C T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOCS3 27304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49576416 49576416 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOCS3 27304 hgsc.bcm.edu 37 20 49575507 49575508 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOGAT2 80168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 75438650 75438650 + Silent SNP G G T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOGAT2 80168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 75439854 75439854 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOGAT3 346606 hgsc.bcm.edu 37 7 100844112 100844112 + Silent SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MON1A 84315 broad.mit.edu 37 3 49948281 49948281 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MON1B 22879 hgsc.bcm.edu;ucsc.edu 37 16 77228407 77228409 + In_Frame_Del DEL CCT CCT - novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 CCT CCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MON2 23041 broad.mit.edu 37 12 62887719 62887719 + Missense_Mutation SNP T A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MON2 23041 broad.mit.edu 37 12 62902396 62902396 + Intron SNP G T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MON2 23041 hgsc.bcm.edu;ucsc.edu 37 12 62892790 62892790 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MORC1 27136 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 108788593 108788593 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MORC2 22880 broad.mit.edu 37 22 31322760 31322760 + 3'UTR SNP T G G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MORC2 22880 broad.mit.edu 37 22 31322760 31322760 + 3'UTR SNP T G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MORC2 22880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31328363 31328363 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MORC2 22880 hgsc.bcm.edu 37 22 31328970 31328970 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MORC2 22880 hgsc.bcm.edu;ucsc.edu 37 22 31346363 31346363 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MORC3 23515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37721695 37721695 + Silent SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MORC3 23515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37736413 37736413 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MORC4 79710 broad.mit.edu 37 X 106184602 106184609 + 3'UTR DEL GAGAGAGA - - rs72166950 unknown;alternate_allele TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 GAGAGAGA GAGAGAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MORC4 79710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106186437 106186437 + Splice_Site SNP T T A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MORC4 79710 hgsc.bcm.edu;ucsc.edu 37 X 106236587 106236588 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOSC1 0 hgsc.bcm.edu;ucsc.edu 37 1 220978582 220978582 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOSPD1 56180 broad.mit.edu 37 X 134030784 134030784 + Intron SNP G C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MOSPD2 158747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 14891810 14891810 + Splice_Site SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOSPD3 64598 broad.mit.edu;hgsc.bcm.edu 37 7 100211116 100211116 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOSPD3 64598 broad.mit.edu;hgsc.bcm.edu 37 7 100211260 100211260 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOSPD3 64598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100211278 100211278 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOV10 4343 hgsc.bcm.edu 37 1 113234325 113234325 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MOV10L1 54456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50538014 50538014 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOV10L1 54456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50555733 50555733 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOV10L1 54456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50558941 50558941 + Nonsense_Mutation SNP C C T rs150693045 by1000genomes TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MOXD1 26002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132643865 132643865 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPDZ 8777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 13221425 13221427 + In_Frame_Del DEL TCC TCC - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 TCC TCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPDZ 8777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 13224388 13224388 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPDZ 8777 hgsc.bcm.edu 37 9 13192294 13192294 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPDZ 8777 hgsc.bcm.edu;ucsc.edu 37 9 13206010 13206011 + Frame_Shift_Ins INS - - TT novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPEG1 219972 hgsc.bcm.edu;ucsc.edu 37 11 58978851 58978851 + Silent SNP T T A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPG 4350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 133207 133207 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPG 4350 hgsc.bcm.edu 37 16 129275 129275 + Intron SNP T T A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPHOSPH10 10199 broad.mit.edu;hgsc.bcm.edu 37 2 71360677 71360677 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPHOSPH10 10199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71361866 71361866 + Frame_Shift_Del DEL T T - novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPHOSPH10 10199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71368393 71368393 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPHOSPH10 10199 hgsc.bcm.edu 37 2 71361870 71361870 + Missense_Mutation SNP A A C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPHOSPH10 10199 hgsc.bcm.edu;ucsc.edu 37 2 71360308 71360308 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPHOSPH6 10200 broad.mit.edu 37 16 82182151 82182151 + 3'UTR SNP A G G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPHOSPH6 10200 hgsc.bcm.edu 37 16 82203742 82203742 + Silent SNP T T C rs1134847 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPHOSPH6 10200 hgsc.bcm.edu 37 16 82203742 82203742 + Silent SNP T T C rs1134847 bycluster;byfrequency;by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPHOSPH6 10200 hgsc.bcm.edu;ucsc.edu 37 16 82185072 82185074 + In_Frame_Del DEL AGA AGA - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPHOSPH8 54737 hgsc.bcm.edu 37 13 20208028 20208028 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPHOSPH8 54737 hgsc.bcm.edu 37 13 20220763 20220763 + Missense_Mutation SNP C C A rs72653464 byfrequency TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPI 4351 hgsc.bcm.edu 37 15 75185068 75185068 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPND 84954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4352949 4352949 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPO 4353 broad.mit.edu 37 17 56350261 56350261 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPO 4353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56349016 56349016 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPO 4353 hgsc.bcm.edu 37 17 56351014 56351014 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPO 4353 hgsc.bcm.edu;ucsc.edu 37 17 56350802 56350802 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPP1 4354 broad.mit.edu;ucsc.edu 37 X 154010064 154010064 + Silent SNP C A A rs147268060 unknown;alternate_allele TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPP2 4355 broad.mit.edu 37 17 41955101 41955101 + 3'UTR SNP T G G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPP2 4355 broad.mit.edu 37 17 41960604 41960604 + Missense_Mutation SNP C G G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPP3 4356 broad.mit.edu 37 17 41898423 41898423 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPP4 58538 broad.mit.edu 37 2 202530782 202530782 + Intron SNP C T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPP4 58538 hgsc.bcm.edu;ucsc.edu 37 2 202549860 202549860 + Silent SNP G G T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPP5 64398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 67779288 67779288 + Silent SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPP5 64398 hgsc.bcm.edu;ucsc.edu 37 14 67746078 67746078 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPP6 51678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 24720095 24720095 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPPE1 65258 broad.mit.edu 37 18 11886304 11886304 + Intron DEL A - - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPPED2 744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30557623 30557623 + Silent SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPPED2 744 hgsc.bcm.edu;ucsc.edu 37 11 30435856 30435856 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPRIP 23164 broad.mit.edu;hgsc.bcm.edu 37 17 17078669 17078669 + Silent SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPST 4357 broad.mit.edu 37 22 37420445 37420445 + Frame_Shift_Del DEL C - - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPST 4357 broad.mit.edu 37 22 37420797 37420797 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MPV17L 255027 broad.mit.edu;hgsc.bcm.edu 37 16 15501819 15501819 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPV17L 255027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15501886 15501886 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPZL1 9019 broad.mit.edu;hgsc.bcm.edu 37 1 167734877 167734877 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPZL2 10205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118133279 118133279 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPZL2 10205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118133354 118133354 + Missense_Mutation SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MPZL3 196264 hgsc.bcm.edu 37 11 118106270 118106270 + Silent SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MPZL3 196264 hgsc.bcm.edu;ucsc.edu 37 11 118106270 118106270 + Silent SNP A A G novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MR1 3140 broad.mit.edu 37 1 181019499 181019499 + Intron SNP A T T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRAP 56246 hgsc.bcm.edu 37 21 33684178 33684178 + Silent SNP C C G rs17855143 bycluster;byfrequency;by1000genomes TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRAS 22808 broad.mit.edu;ucsc.edu 37 3 138117372 138117372 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRC2 9902 broad.mit.edu 37 17 60743545 60743545 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRC2 9902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60757631 60757631 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRC2 9902 hgsc.bcm.edu;ucsc.edu 37 17 60769793 60769793 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRE11A 4361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94169018 94169018 + Silent SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRE11A 4361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94219122 94219122 + Silent SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRGPRD 116512 broad.mit.edu 37 11 68748065 68748065 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRGPRD 116512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68747868 68747868 + Silent SNP C C G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRGPRF 116535 hgsc.bcm.edu 37 11 68777323 68777323 + Missense_Mutation SNP T T C rs11544721 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRGPRG 386746 hgsc.bcm.edu 37 11 3239798 3239798 + Silent SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRGPRX2 117194 hgsc.bcm.edu;ucsc.edu 37 11 19077607 19077607 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRGPRX3 117195 broad.mit.edu 37 11 18158742 18158742 + 5'UTR SNP T G G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRGPRX3 117195 broad.mit.edu;hgsc.bcm.edu 37 11 18159570 18159570 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRGPRX3 117195 hgsc.bcm.edu;ucsc.edu 37 11 18159153 18159153 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRGPRX4 117196 broad.mit.edu 37 11 18194722 18194722 + 5'UTR SNP T G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRGPRX4 117196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18194921 18194921 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRM1 79922 broad.mit.edu 37 17 34964977 34964977 + 3'UTR DEL A - - novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRM1 79922 broad.mit.edu 37 17 34964977 34964977 + 3'UTR DEL A - - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRM1 79922 broad.mit.edu 37 17 34964977 34964977 + 3'UTR DEL A - - novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRM1 79922 hgsc.bcm.edu;ucsc.edu 37 17 34958701 34958701 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRO 83876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48335764 48335764 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRO 83876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48345981 48345981 + Silent SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRP63 78988 broad.mit.edu 37 13 21751241 21751241 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRP63 78988 broad.mit.edu 37 13 21751528 21751529 + 3'UTR INS - C C rs35333752 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL14 64928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44081767 44081767 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL14 64928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44084332 44084332 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL15 29088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55049858 55049858 + Silent SNP C C G novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL15 29088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55055338 55055338 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL1 65008 broad.mit.edu 37 4 78783945 78783945 + 5'UTR SNP A C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL1 65008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 78792972 78792972 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL16 54948 hgsc.bcm.edu;ucsc.edu 37 11 59577390 59577390 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPL18 29074 broad.mit.edu 37 6 160211819 160211819 + Intron SNP G A A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL18 29074 broad.mit.edu 37 6 160218317 160218317 + Splice_Site SNP A C C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL18 29074 broad.mit.edu 37 6 160219197 160219197 + 3'UTR SNP T C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL18 29074 hgsc.bcm.edu;ucsc.edu 37 6 160218373 160218373 + Silent SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPL22 29093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154330404 154330404 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL23 6150 broad.mit.edu;hgsc.bcm.edu 37 11 1977698 1977698 + 3'UTR SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL2 51069 broad.mit.edu 37 6 43021911 43021911 + 3'UTR DEL A - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL2 51069 broad.mit.edu;hgsc.bcm.edu 37 6 43024130 43024130 + Missense_Mutation SNP T T G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL30 51263 broad.mit.edu;hgsc.bcm.edu 37 2 99812127 99812127 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL3 11222 hgsc.bcm.edu 37 3 131217020 131217020 + Intron SNP T T C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL3 11222 hgsc.bcm.edu;ucsc.edu 37 3 131188621 131188621 + Intron SNP A A T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL32 64983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42974658 42974658 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL38 64978 broad.mit.edu 37 17 73898001 73898001 + Missense_Mutation SNP G C C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL4 51073 broad.mit.edu;ucsc.edu 37 19 10370469 10370469 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL46 26589 broad.mit.edu 37 15 89007756 89007756 + Intron DEL A - - rs66597211 unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL46 26589 hgsc.bcm.edu 37 15 89002955 89002955 + Silent SNP A A G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPL48 51642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73555925 73555925 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL50 54534 broad.mit.edu 37 9 104152596 104152596 + 3'UTR DEL A - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPL50 54534 hgsc.bcm.edu 37 9 104152751 104152752 + Frame_Shift_Ins INS - - TA novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPL51 51258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6602132 6602132 + Missense_Mutation SNP G G C rs11559083 bycluster;alternate_allele TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL51 51258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6602137 6602137 + Silent SNP A A C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL53 116540 hgsc.bcm.edu 37 2 74699716 74699716 + Silent SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPL54 116541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3765311 3765311 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPL54 116541 hgsc.bcm.edu 37 19 3762705 3762705 + Missense_Mutation SNP A A G rs148456964 bycluster;byfrequency;by1000genomes TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPL9 65005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151732588 151732588 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS11 64963 broad.mit.edu 37 15 89010749 89010749 + 5'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS15 64960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36926350 36926350 + Nonsense_Mutation SNP G G A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS17 51373 broad.mit.edu 37 7 56022934 56022934 + 3'UTR SNP T A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS17 51373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 56022693 56022693 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS18A 55168 broad.mit.edu 37 6 43655468 43655468 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS18A 55168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43642986 43642986 + Silent SNP A A T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS18B 28973 broad.mit.edu;hgsc.bcm.edu 37 6 30593435 30593435 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS18C 51023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 84379580 84379580 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS21 54460 broad.mit.edu;hgsc.bcm.edu 37 1 150266811 150266811 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS22 56945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 139074556 139074556 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS24 64951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43906364 43906364 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS26 64949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3028493 3028493 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS28 28957 broad.mit.edu 37 8 80831121 80831121 + 3'UTR SNP T C C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS31 10240 broad.mit.edu 37 13 41345346 41345346 + 5'UTR SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS33 51650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 140710230 140710230 + Silent SNP A A C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS35 60488 hgsc.bcm.edu;ucsc.edu 37 12 27877103 27877103 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPS36 92259 hgsc.bcm.edu 37 5 68525020 68525020 + Intron SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPS36 92259 hgsc.bcm.edu;ucsc.edu 37 5 68522165 68522165 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MRPS5 64969 broad.mit.edu;hgsc.bcm.edu 37 2 95773989 95773989 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS5 64969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 95780928 95780928 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS6 64968 hgsc.bcm.edu;ucsc.edu 37 21 35514723 35514723 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRPS7 51081 broad.mit.edu 37 17 73258412 73258412 + Intron SNP C T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS7 51081 broad.mit.edu 37 17 73262098 73262098 + 3'UTR DEL T - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRPS7 51081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73258639 73258639 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MRS2 57380 broad.mit.edu 37 6 24423464 24423464 + Intron SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRVI1 10335 broad.mit.edu 37 11 10647673 10647673 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRVI1 10335 broad.mit.edu;ucsc.edu 37 11 10624763 10624763 + Silent SNP C G G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MRVI1 10335 hgsc.bcm.edu 37 11 10673639 10673639 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MS4A10 341116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60561455 60561455 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A12 54860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60264961 60264961 + Missense_Mutation SNP C C T rs148561730 unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A12 54860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60265014 60265014 + Missense_Mutation SNP C C G rs146116909 unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A12 54860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60265040 60265040 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60164088 60164088 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60164109 60164109 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60183100 60183100 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60183976 60183976 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A15 219995 hgsc.bcm.edu 37 11 60531258 60531258 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MS4A15 219995 hgsc.bcm.edu;ucsc.edu 37 11 60538759 60538759 + Intron SNP T T C novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A1 931 broad.mit.edu 37 11 60236247 60236247 + 3'UTR DEL T - - rs34273920 bycluster;by1000genomes TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MS4A1 931 broad.mit.edu 37 11 60236247 60236247 + 3'UTR DEL T - - rs34273920 bycluster;by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MS4A2 2206 hgsc.bcm.edu;ucsc.edu 37 11 59860282 59860283 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A3 932 broad.mit.edu;hgsc.bcm.edu 37 11 59834429 59834429 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MS4A3 932 broad.mit.edu;hgsc.bcm.edu 37 11 59837725 59837725 + 3'UTR SNP T T C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A3 932 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59837676 59837676 + Splice_Site SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MS4A3 932 hgsc.bcm.edu;ucsc.edu 37 11 59834545 59834545 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM SOLID MS4A6A 64231 broad.mit.edu;hgsc.bcm.edu 37 11 59949129 59949129 + Silent SNP T T C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A6E 245802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60102420 60102420 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A7 58475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60150630 60150630 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MS4A8B 83661 broad.mit.edu 37 11 60467178 60467178 + 5'UTR DEL A - - rs34321729 unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSC 9242 broad.mit.edu;hgsc.bcm.edu 37 8 72756043 72756043 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSH2 4436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 47703619 47703619 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MSH3 4437 broad.mit.edu 37 5 79950727 79950728 + In_Frame_Ins INS - CAGCGCCCC CAGCGCCCC novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSH3 4437 broad.mit.edu;ucsc.edu 37 5 79950742 79950750 + In_Frame_Del DEL CCCCCAGCT - - rs144629981 by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 CCCCCAGCT CCCCCAGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSH3 4437 hgsc.bcm.edu 37 5 80057496 80057496 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSH3 4437 hgsc.bcm.edu;ucsc.edu 37 5 80074600 80074600 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSH4 4438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76262748 76262748 + Silent SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSH4 4438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76269428 76269428 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSH4 4438 hgsc.bcm.edu 37 1 76282224 76282224 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSH5 4439 hgsc.bcm.edu 37 6 31729359 31729359 + Silent SNP A A G rs80093443 bycluster TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSH6 2956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48026389 48026389 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MSH6 2956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48032817 48032817 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MSH6 2956 hgsc.bcm.edu;ucsc.edu 37 2 48027971 48027971 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MSI1 4440 broad.mit.edu 37 12 120805861 120805861 + Missense_Mutation SNP C G G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSI1 4440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120791103 120791103 + Silent SNP G G A rs140182426 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSI1 4440 hgsc.bcm.edu;ucsc.edu 37 12 120805824 120805824 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSL1 339287 broad.mit.edu 37 17 38291470 38291470 + 3'UTR DEL G - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSL1 339287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38285875 38285875 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSL2 55167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 135913893 135913893 + Silent SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSL3 10943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 11781972 11781973 + Frame_Shift_Ins INS - - ATCC novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSL3L2 0 broad.mit.edu;ucsc.edu 37 2 234775439 234775439 + Missense_Mutation SNP T A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSLN 10232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 816775 816775 + Silent SNP C C G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSLN 10232 hgsc.bcm.edu 37 16 813650 813650 + Silent SNP G G A rs3765319 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSLN 10232 hgsc.bcm.edu 37 16 815528 815528 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSLNL 401827 broad.mit.edu;hgsc.bcm.edu 37 16 823128 823128 + Splice_Site SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSLNL 401827 hgsc.bcm.edu 37 16 830748 830767 + Frame_Shift_Del DEL GTGTGCACGGGTAGGTGACG GTGTGCACGGGTAGGTGACG - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 GTGTGCACGGGTAGGTGACG GTGTGCACGGGTAGGTGACG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSLNL 401827 hgsc.bcm.edu 37 16 830786 830787 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSLNL 401827 hgsc.bcm.edu 37 16 830807 830829 + Frame_Shift_Del DEL AGCTGTGTGCACGGGTAGGTGAA AGCTGTGTGCACGGGTAGGTGAA - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 AGCTGTGTGCACGGGTAGGTGAA AGCTGTGTGCACGGGTAGGTGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSMP 692094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35753713 35753713 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSN 4478 broad.mit.edu 37 X 64958995 64958995 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSN 4478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 64959702 64959702 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MSR1 4481 broad.mit.edu;hgsc.bcm.edu 37 8 16021600 16021600 + Missense_Mutation SNP G G T rs143967440 unknown;alternate_allele TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MSR1 4481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 15967631 15967631 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MSR1 4481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 15977930 15977930 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MSR1 4481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 16032735 16032735 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MSR1 4481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 16035394 16035394 + Splice_Site SNP C C T rs150131889 byfrequency;alternate_allele TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MSR1 4481 hgsc.bcm.edu;ucsc.edu 37 8 16026149 16026149 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM SOLID MSRB3 253827 broad.mit.edu 37 12 65672498 65672501 + 5'UTR DEL GGGA - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 GGGA GGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSRB3 253827 hgsc.bcm.edu;ucsc.edu 37 12 65856991 65856991 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MST1 4485 broad.mit.edu 37 3 49723670 49723670 + Intron SNP T C C rs2329008 unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1 4485 broad.mit.edu 37 3 49723726 49723727 + Intron INS - CC CC rs10662055 unknown;alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1 4485 hgsc.bcm.edu 37 3 49721998 49721998 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MST1 4485 hgsc.bcm.edu 37 3 49725086 49725086 + Silent SNP G G A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MST1P2 11209 broad.mit.edu 37 1 16973855 16973855 + RNA SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16973855 16973855 + RNA SNP G A A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974141 16974141 + RNA DEL G - - rs111981558 unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974141 16974141 + RNA DEL G - - rs111981558 unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974182 16974182 + RNA SNP C A A rs4661977 bycluster TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974182 16974182 + RNA SNP C A A rs4661977 bycluster TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974224 16974224 + RNA SNP C G G rs61769737 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974224 16974224 + RNA SNP C G G rs61769737 unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974243 16974243 + RNA SNP G C C rs12062025 byfrequency TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974256 16974256 + RNA SNP G C C rs2743519 bycluster;byfrequency;by2hit2allele TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974277 16974277 + RNA SNP A C C rs4661885 unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974549 16974549 + RNA SNP C G G rs71240336 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974549 16974549 + RNA SNP C G G rs71240336 unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974745 16974745 + RNA SNP G A A rs78283833 byfrequency TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974745 16974745 + RNA SNP G A A rs78283833 byfrequency TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974758 16974758 + RNA SNP G A A rs78488193 byfrequency TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974758 16974758 + RNA SNP G A A rs78488193 byfrequency TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974955 16974955 + RNA SNP A G G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16974972 16974972 + RNA SNP C T T rs58464479 bycluster;by1000genomes TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975030 16975030 + RNA SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975045 16975045 + RNA SNP G A A rs55763726 bycluster;byfrequency TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975093 16975093 + RNA SNP C T T rs77888405 unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975495 16975495 + RNA SNP T C C rs2761532 bycluster;by2hit2allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975495 16975495 + RNA SNP T C C rs2761532 bycluster;by2hit2allele TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975626 16975626 + Intron SNP G C C rs75869566 unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975626 16975626 + Intron SNP G C C rs75869566 unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16975868 16975868 + Intron SNP T A A rs12036749 bycluster;byhapmap TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16976345 16976345 + RNA SNP T C C rs1064317 bycluster;byfrequency TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16976585 16976585 + RNA SNP C T T rs11545933 byfrequency TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16976585 16976585 + RNA SNP C T T rs11545933 byfrequency TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16976641 16976641 + RNA SNP C T T rs71230903 unknown;alternate_allele TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P2 11209 broad.mit.edu 37 1 16976825 16976825 + RNA SNP C A A rs71212107 unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17083652 17083652 + 3'UTR SNP C T T rs113710576 bycluster TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17084021 17084021 + Missense_Mutation SNP C G G rs56303240 byfrequency TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17084510 17084510 + Silent SNP G A A rs61769731 byfrequency TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17084968 17084968 + Missense_Mutation SNP G C C rs57763054 bycluster;byfrequency TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17085189 17085189 + Intron SNP A G G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17085712 17085712 + Intron SNP C T T rs78283833 byfrequency TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17085795 17085795 + Silent SNP G T T rs1057379 bycluster TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17085848 17085848 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17085908 17085908 + Intron SNP C G G rs71240336 unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17085908 17085908 + Intron SNP C G G rs71240336 unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1P9 0 broad.mit.edu 37 1 17086183 17086183 + Splice_Site SNP T G G rs61769735 unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1R 4486 broad.mit.edu 37 3 49940468 49940476 + In_Frame_Del DEL CCTTGCTCA - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 CCTTGCTCA CCTTGCTCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MST1R 4486 hgsc.bcm.edu 37 3 49936537 49936537 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MST1R 4486 hgsc.bcm.edu;ucsc.edu 37 3 49927956 49927956 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MST1R 4486 hgsc.bcm.edu;ucsc.edu 37 3 49936537 49936537 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MST4 51765 hgsc.bcm.edu 37 X 131208159 131208159 + Splice_Region SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MSTO2P 100129405 broad.mit.edu 37 1 155718444 155718444 + RNA SNP T C C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSX2 4488 broad.mit.edu 37 5 174156661 174156661 + 3'UTR SNP A C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MSX2 4488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 174156377 174156377 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MT1E 4493 broad.mit.edu 37 16 56660686 56660686 + Intron SNP A G G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MT1E 4493 hgsc.bcm.edu 37 16 56659733 56659733 + 5'UTR SNP G G C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MT1G 4495 broad.mit.edu;hgsc.bcm.edu 37 16 56701946 56701946 + 5'UTR SNP A A G novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MT1G 4495 broad.mit.edu;ucsc.edu 37 16 56700810 56700810 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MT1X 4501 broad.mit.edu 37 16 56717289 56717289 + Intron SNP T A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MT1X 4501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56717111 56717111 + Silent SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MT1X 4501 broad.mit.edu;ucsc.edu 37 16 56717110 56717110 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MT1X 4501 hgsc.bcm.edu 37 16 56717913 56717913 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MT1X 4501 hgsc.bcm.edu;ucsc.edu 37 16 56716416 56716416 + 5'UTR SNP C C A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MT2A 4502 broad.mit.edu 37 16 56643363 56643363 + 3'UTR DEL T - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTA1 9112 broad.mit.edu 37 14 105930474 105930474 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTA2 9219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62362921 62362921 + Missense_Mutation SNP C C T rs139421444 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTA2 9219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62366080 62366080 + Silent SNP C C G novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTA2 9219 hgsc.bcm.edu 37 11 62361740 62361740 + Missense_Mutation SNP T T A rs112851477 unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTA3 57504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 42909669 42909669 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTAP 4507 broad.mit.edu 37 9 21967162 21967163 + Intron INS - A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTAP 4507 broad.mit.edu 37 9 21967163 21967163 + Intron DEL A - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTAP 4507 broad.mit.edu 37 9 21967163 21967163 + Intron DEL A - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTAP 4507 broad.mit.edu;hgsc.bcm.edu 37 9 21818193 21818193 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTAP 4507 broad.mit.edu;ucsc.edu 37 9 21837965 21837965 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTBP 27085 broad.mit.edu 37 8 121463702 121463702 + Intron SNP G A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTBP 27085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 121500410 121500410 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTCH1 23787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36938212 36938212 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTCH2 23788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47652589 47652589 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTCH2 23788 hgsc.bcm.edu 37 11 47644274 47644274 + Silent SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTCH2 23788 hgsc.bcm.edu 37 11 47663986 47663986 + Missense_Mutation SNP C C T rs72909898 bycluster TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTDH 92140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 98703207 98703207 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTDH 92140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 98703400 98703400 + Silent SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTERF 7978 broad.mit.edu 37 7 91503926 91503926 + Missense_Mutation SNP T G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTERF 7978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91503200 91503200 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTERFD1 51001 broad.mit.edu 37 8 97258647 97258647 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTERFD2 130916 hgsc.bcm.edu;ucsc.edu 37 2 242038907 242038907 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTERFD3 80298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 107371722 107371722 + Silent SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTF1 4520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38300878 38300878 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTF1 4520 broad.mit.edu;ucsc.edu 37 1 38323150 38323150 + Nonsense_Mutation SNP C A A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTF1 4520 hgsc.bcm.edu;ucsc.edu 37 1 38300849 38300849 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTFMT 123263 broad.mit.edu 37 15 65295300 65295301 + 3'UTR INS - A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTFR1 9650 broad.mit.edu 37 8 66620359 66620359 + Intron SNP G A A rs13274205 bycluster;byfrequency;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTFR1 9650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 66619369 66619369 + Silent SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTG1 92170 hgsc.bcm.edu;ucsc.edu 37 10 135209280 135209280 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1 4522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64855180 64855180 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTHFD1 4522 hgsc.bcm.edu 37 14 64886600 64886600 + Silent SNP A A G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1 4522 hgsc.bcm.edu 37 14 64891605 64891605 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1 4522 hgsc.bcm.edu 37 14 64891617 64891617 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTHFD1 4522 hgsc.bcm.edu;ucsc.edu 37 14 64882205 64882205 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1 4522 hgsc.bcm.edu;ucsc.edu 37 14 64908174 64908174 + Splice_Region SNP G G T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1 4522 hgsc.bcm.edu;ucsc.edu 37 14 64911477 64911477 + Intron SNP G G A rs139279657 by1000genomes TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1L 25902 hgsc.bcm.edu;ucsc.edu 37 6 151336687 151336687 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD1L 25902 hgsc.bcm.edu;ucsc.edu 37 6 151358209 151358209 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFD2 10797 broad.mit.edu 37 2 74438783 74438783 + Intron SNP G A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTHFR 4524 broad.mit.edu 37 1 11863600 11863600 + Intron SNP G T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTHFR 4524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11855302 11855302 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTHFSD 64779 broad.mit.edu 37 16 86564386 86564386 + 3'UTR DEL C - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTHFSD 64779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 86565766 86565766 + Silent SNP G G T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTHFSD 64779 hgsc.bcm.edu 37 16 86575780 86575780 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTHFSD 64779 hgsc.bcm.edu;ucsc.edu 37 16 86585687 86585687 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTL5 9633 hgsc.bcm.edu 37 11 68483356 68483356 + Silent SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR10 54893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 31266655 31266655 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR10 54893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 31282988 31282988 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR10 54893 broad.mit.edu;ucsc.edu 37 15 31260141 31260141 + Missense_Mutation SNP T C C rs185348229 by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTMR10 54893 hgsc.bcm.edu;ucsc.edu 37 15 31266580 31266580 + Silent SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR11 10903 broad.mit.edu;hgsc.bcm.edu 37 1 149901022 149901022 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR11 10903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 149901785 149901785 + Silent SNP G G C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR11 10903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 149903193 149903193 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR11 10903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 149908474 149908474 + Splice_Site SNP C C T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR12 54545 broad.mit.edu;hgsc.bcm.edu 37 5 32242165 32242165 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR12 54545 hgsc.bcm.edu;ucsc.edu 37 5 32268894 32268894 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR14 64419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9724925 9724925 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR15 0 hgsc.bcm.edu 37 15 31221493 31221493 + Missense_Mutation SNP C C T rs80120912 bycluster;byfrequency;by1000genomes TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR15 0 hgsc.bcm.edu;ucsc.edu 37 15 31206244 31206244 + Silent SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR1 8776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 149900042 149900042 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR2 8898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 95581057 95581057 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR3 8897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30418102 30418102 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR3 8897 hgsc.bcm.edu 37 22 30403925 30403925 + Silent SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR3 8897 hgsc.bcm.edu 37 22 30408372 30408372 + Silent SNP T T C rs147773147 unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR3 8897 hgsc.bcm.edu;ucsc.edu 37 22 30415808 30415816 + In_Frame_Del DEL CCCTCTCTT CCCTCTCTT - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 CCCTCTCTT CCCTCTCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR4 9110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56573389 56573389 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR4 9110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56581545 56581546 + Frame_Shift_Ins INS - - GT novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR4 9110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56589825 56589825 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR4 9110 hgsc.bcm.edu 37 17 56584196 56584196 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR4 9110 hgsc.bcm.edu 37 17 56584197 56584197 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR4 9110 hgsc.bcm.edu;ucsc.edu 37 17 56572562 56572562 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR6 9107 broad.mit.edu 37 13 25823175 25823176 + 3'UTR INS - AA AA novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTMR6 9107 broad.mit.edu 37 13 25823176 25823177 + 3'UTR INS - A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTMR7 9108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17157530 17157530 + Silent SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR8 55613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 63488824 63488824 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR8 55613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 63568632 63568632 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTMR8 55613 hgsc.bcm.edu 37 X 63548772 63548772 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTMR9 66036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11142463 11142463 + Silent SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTNR1B 4544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92702959 92702959 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTNR1B 4544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92714908 92714908 + Silent SNP G G C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTO1 25821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 74192199 74192199 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu 37 1 11188177 11188177 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu 37 1 11190694 11190694 + Silent SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu 37 1 11291426 11291426 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu 37 1 11319454 11319454 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11169375 11169375 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11177077 11177077 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11177096 11177096 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11184573 11184573 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11184589 11184589 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11188078 11188078 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11188164 11188164 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11189845 11189845 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11210198 11210198 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217230 11217230 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217290 11217290 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217299 11217299 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217303 11217303 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217322 11217322 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11227530 11227530 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MTOR 2475 broad.mit.edu;ucsc.edu 37 1 11168294 11168294 + Silent SNP C T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx MTOR 2475 broad.mit.edu;ucsc.edu 37 1 11187799 11187799 + Missense_Mutation SNP T A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx MTOR 2475 broad.mit.edu;ucsc.edu 37 1 11217299 11217299 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTOR 2475 hgsc.bcm.edu;ucsc.edu 37 1 11182158 11182158 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID MTOR 2475 hgsc.bcm.edu;ucsc.edu 37 1 11189847 11189847 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM SOLID MTOR 2475 hgsc.bcm.edu;ucsc.edu 37 1 11189847 11189847 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM SOLID MTOR 2475 hgsc.bcm.edu;ucsc.edu 37 1 11189851 11189851 + Silent SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID MTP18 0 broad.mit.edu 37 22 30824783 30824783 + 3'UTR SNP G T T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTP18 0 hgsc.bcm.edu 37 22 30824553 30824553 + Silent SNP C C A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTR 4548 broad.mit.edu 37 1 237061056 237061056 + 3'UTR SNP A C C rs2853522 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTR 4548 broad.mit.edu 37 1 237065771 237065771 + 3'UTR DEL A - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTRF1L 54516 broad.mit.edu 37 6 153323724 153323724 + Silent SNP G A A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTRR 4552 hgsc.bcm.edu;ucsc.edu 37 5 7875376 7875376 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTRR 4552 hgsc.bcm.edu;ucsc.edu 37 5 7897260 7897260 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTSS1 9788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125565825 125565825 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTSS1 9788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125568525 125568525 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTSS1 9788 broad.mit.edu;ucsc.edu 37 8 125568483 125568483 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTSS1L 92154 hgsc.bcm.edu 37 16 70713617 70713617 + Splice_Region SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTTP 4547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 100515934 100515934 + Missense_Mutation SNP T T C rs146513720 unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTTP 4547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 100521758 100521758 + Silent SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTTP 4547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 100532310 100532310 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS1 57509 broad.mit.edu 37 8 17581095 17581095 + Intron DEL A - - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTUS1 57509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17612616 17612616 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS1 57509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17612685 17612685 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS1 57509 hgsc.bcm.edu 37 8 17573333 17573333 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS1 57509 hgsc.bcm.edu;ucsc.edu 37 8 17581247 17581247 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTUS1 57509 hgsc.bcm.edu;ucsc.edu 37 8 17612773 17612773 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29599346 29599346 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29600300 29600300 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29608253 29608253 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 30062042 30062042 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MTUS2 23281 broad.mit.edu;ucsc.edu 37 13 30071435 30071435 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTUS2 23281 hgsc.bcm.edu;ucsc.edu 37 13 29600572 29600572 + Silent SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MTX3 345778 broad.mit.edu 37 5 79279310 79279311 + 3'UTR INS - TGA TGA rs3841613 bycluster TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTX3 345778 broad.mit.edu 37 5 79279310 79279311 + 3'UTR INS - TGA TGA rs3841613 bycluster TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MTX3 345778 broad.mit.edu 37 5 79279310 79279311 + 3'UTR INS - TGA TGA rs3841613 bycluster TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC12 10071 hgsc.bcm.edu;ucsc.edu 37 7 100634674 100634674 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC12 10071 hgsc.bcm.edu;ucsc.edu 37 7 100658976 100658976 + Splice_Region SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC12 10071 hgsc.bcm.edu;ucsc.edu 37 7 100661872 100661872 + Intron SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC13 56667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124635228 124635228 + Silent SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC13 56667 hgsc.bcm.edu 37 3 124646701 124646702 + In_Frame_Ins INS - - GAA novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC13 56667 hgsc.bcm.edu 37 3 124653519 124653519 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC13 56667 hgsc.bcm.edu;ucsc.edu 37 3 124632487 124632487 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC13 56667 hgsc.bcm.edu;ucsc.edu 37 3 124646754 124646754 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC1 4582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155160211 155160211 + Silent SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC15 143662 broad.mit.edu 37 11 26581451 26581451 + 3'UTR SNP A G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC15 143662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26582750 26582750 + Silent SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu 37 19 9067792 9067792 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T T C T T Unknown Unknown Somatic Phase_I Capture 454 Illumina GAIIx MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8976796 8976796 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8998753 8998753 + Silent SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9000513 9000513 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9009312 9009312 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9009313 9009313 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9047434 9047434 + Silent SNP A A G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9062883 9062883 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9064631 9064631 + Silent SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9065878 9065878 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9066178 9066178 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9066745 9066745 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9066807 9066807 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9067149 9067149 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9067241 9067241 + Silent SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9067242 9067242 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9067640 9067640 + Silent SNP A A G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9069219 9069219 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9070296 9070296 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9070657 9070657 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9072939 9072939 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9074345 9074345 + Silent SNP T T C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9076252 9076252 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9085732 9085732 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9087338 9087338 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9089041 9089041 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9089241 9089241 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC16 94025 broad.mit.edu;ucsc.edu 37 19 9046549 9046549 + Silent SNP A G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC16 94025 broad.mit.edu;ucsc.edu 37 19 9077024 9077024 + Silent SNP G A A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx MUC16 94025 hgsc.bcm.edu 37 19 8992993 8992993 + Intron SNP G G A rs114497462 byfrequency;by1000genomes TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu 37 19 8996451 8996451 + Silent SNP G G A rs77062145 unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu 37 19 8999488 8999488 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 hgsc.bcm.edu 37 19 9018158 9018158 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 hgsc.bcm.edu 37 19 9018479 9018479 + Silent SNP G G T rs111639147 unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu 37 19 9025584 9025584 + Intron SNP T T G rs77811999 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 hgsc.bcm.edu 37 19 9047853 9047853 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu 37 19 9048320 9048320 + Missense_Mutation SNP C C T rs56334501 bycluster;byfrequency;by1000genomes TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu 37 19 9048320 9048320 + Missense_Mutation SNP C C T rs56334501 bycluster;byfrequency;by1000genomes TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu 37 19 9048364 9048369 + In_Frame_Del DEL AGTTGG AGTTGG - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 AGTTGG AGTTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 hgsc.bcm.edu 37 19 9085330 9085330 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9047853 9047853 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9057886 9057886 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9059304 9059304 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9061085 9061085 + Silent SNP G G T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9067458 9067458 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C C T C C Unknown Unknown Somatic Phase_I Capture 454 SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9074004 9074004 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9074828 9074828 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9075200 9075200 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9087220 9087220 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9087231 9087231 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9091029 9091029 + Silent SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID MUC17 140453 broad.mit.edu;hgsc.bcm.edu 37 7 100680563 100680563 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC17 140453 broad.mit.edu;hgsc.bcm.edu 37 7 100696341 100696341 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC17 140453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100680818 100680818 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC17 140453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100681776 100681776 + Missense_Mutation SNP C C A rs143338962 unknown;alternate_allele TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C C A C C Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq MUC17 140453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100685938 100685938 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC17 140453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100686874 100686874 + Silent SNP T T G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC17 140453 hgsc.bcm.edu 37 7 100684091 100684092 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC17 140453 hgsc.bcm.edu 37 7 100684143 100684143 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100677944 100677944 + Missense_Mutation SNP T T C rs10264727 bycluster;byfrequency TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100677944 100677944 + Missense_Mutation SNP T T C rs10264727 bycluster;byfrequency TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100678377 100678378 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100678377 100678378 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100678380 100678380 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100678380 100678380 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100696682 100696682 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC20 200958 broad.mit.edu 37 3 195447775 195447775 + 5'UTR SNP A G G rs7620138 bycluster;by2hit2allele;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC20 200958 broad.mit.edu 37 3 195447805 195447805 + 5'UTR SNP T C C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC20 200958 broad.mit.edu 37 3 195452619 195452619 + Missense_Mutation SNP C T T rs28549850 bycluster;byfrequency TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC20 200958 broad.mit.edu 37 3 195452645 195452645 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC20 200958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 195453061 195453061 + Silent SNP C C A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC20 200958 hgsc.bcm.edu 37 3 195452960 195452960 + Missense_Mutation SNP G G A rs4093817 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC20 200958 hgsc.bcm.edu 37 3 195453018 195453018 + Frame_Shift_Del DEL C C - rs144288174 by1000genomes TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 broad.mit.edu 37 6 30951660 30951660 + 5'UTR SNP T G G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC21 394263 broad.mit.edu;hgsc.bcm.edu 37 6 30954884 30954884 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 hgsc.bcm.edu 37 6 30954438 30954438 + Silent SNP C C T rs41288646 unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 hgsc.bcm.edu 37 6 30954485 30954485 + Missense_Mutation SNP G G A rs140951082 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 hgsc.bcm.edu 37 6 30954552 30954552 + Silent SNP C C T rs144720609 byfrequency TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 hgsc.bcm.edu 37 6 30955115 30955115 + Missense_Mutation SNP G G A rs52826894 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 hgsc.bcm.edu 37 6 30955140 30955140 + Silent SNP C C T rs143388506 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC21 394263 hgsc.bcm.edu 37 6 30955191 30955211 + In_Frame_Del DEL GTCCAGTGGGGCCAGCACTGC GTCCAGTGGGGCCAGCACTGC - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 GTCCAGTGGGGCCAGCACTGC GTCCAGTGGGGCCAGCACTGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 broad.mit.edu 37 11 1090371 1090371 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC2 4583 broad.mit.edu 37 11 1093448 1093448 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC2 4583 broad.mit.edu;hgsc.bcm.edu 37 11 1093272 1093272 + Silent SNP A A C rs56230143 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1078457 1078457 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1086012 1086012 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1087470 1087470 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1092095 1092095 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1097746 1097746 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1082315 1082315 + Silent SNP C C T rs58179195 byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC2 4583 hgsc.bcm.edu 37 11 1092238 1092238 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC2 4583 hgsc.bcm.edu 37 11 1092620 1092621 + In_Frame_Ins INS - - AAT novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC2 4583 hgsc.bcm.edu 37 11 1092620 1092621 + In_Frame_Ins INS - - AAT novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC2 4583 hgsc.bcm.edu 37 11 1092816 1092816 + Silent SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1092841 1092841 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1092841 1092841 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1092996 1092996 + Silent SNP C C A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1093135 1093135 + Missense_Mutation SNP A A C rs56080332 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1093286 1093286 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2 4583 hgsc.bcm.edu 37 11 1093569 1093569 + Silent SNP A A C rs72842460 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2(dist=108583) 0 hgsc.bcm.edu 37 11 1213000 1213000 + IGR SNP T T A rs75897537 bycluster TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2(dist=108587) 0 hgsc.bcm.edu 37 11 1213004 1213004 + IGR SNP T T C rs112704799 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC2(dist=108587) 0 hgsc.bcm.edu 37 11 1213004 1213004 + IGR SNP T T C rs112704799 unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu 37 3 195505763 195505763 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505801 195505801 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505830 195505830 + Silent SNP G C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 unknown;alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 unknown;alternate_allele TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 unknown;alternate_allele TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 unknown;alternate_allele TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 unknown;alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505839 195505839 + Silent SNP A T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505855 195505855 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505855 195505855 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505855 195505855 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505855 195505855 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505859 195505859 + Missense_Mutation SNP T C C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505867 195505867 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505867 195505867 + Missense_Mutation SNP A T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505867 195505867 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505872 195505872 + Silent SNP A C C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505874 195505874 + Missense_Mutation SNP G C C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505876 195505876 + Missense_Mutation SNP G C C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195505960 195505960 + Missense_Mutation SNP G C C rs376166 unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506099 195506099 + Missense_Mutation SNP T C C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506315 195506315 + Missense_Mutation SNP T C C rs62282465 byfrequency TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506315 195506315 + Missense_Mutation SNP T C C rs62282465 byfrequency TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506373 195506373 + Silent SNP G A A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506460 195506460 + Missense_Mutation SNP G C C rs113130007 unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506555 195506555 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506597 195506597 + Missense_Mutation SNP G A A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506597 195506597 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506597 195506597 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506603 195506603 + Missense_Mutation SNP T C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506627 195506627 + Missense_Mutation SNP T G G rs145875920 by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506627 195506627 + Missense_Mutation SNP T G G rs145875920 by1000genomes TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506746 195506746 + Missense_Mutation SNP G A A rs192522651 by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506775 195506775 + Silent SNP G A A rs79609066 bycluster;byfrequency;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506839 195506839 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195506983 195506983 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195507051 195507051 + Silent SNP T C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195507059 195507059 + Missense_Mutation SNP T C C rs76367261 unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195507228 195507228 + Missense_Mutation SNP G C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195507324 195507324 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195507717 195507717 + Silent SNP G T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195508133 195508133 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195508500 195508500 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195508903 195508903 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509127 195509127 + Silent SNP A G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509180 195509180 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509182 195509182 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509322 195509322 + Silent SNP G A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509394 195509394 + Silent SNP T G G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509498 195509498 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509563 195509563 + Missense_Mutation SNP A T T rs28605870 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509939 195509939 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509939 195509939 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509939 195509939 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195509941 195509941 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195510108 195510108 + Silent SNP G A A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195510133 195510133 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195510146 195510146 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195510192 195510192 + Silent SNP A C C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195510194 195510194 + Missense_Mutation SNP G C C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511144 195511144 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511310 195511310 + Missense_Mutation SNP G C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511396 195511396 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511396 195511396 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511525 195511525 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511525 195511525 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511526 195511526 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511888 195511888 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195511925 195511925 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195512214 195512214 + Silent SNP G C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195513468 195513468 + Missense_Mutation SNP G C C rs76596008 unknown;alternate_allele TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195513806 195513806 + Missense_Mutation SNP C G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195513812 195513812 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195513826 195513826 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195515059 195515059 + Missense_Mutation SNP G A A rs71321846 unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195515102 195515102 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195515290 195515290 + Missense_Mutation SNP C G G rs78535324 bycluster TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195515435 195515435 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu 37 3 195518112 195518113 + In_Frame_Ins INS - GTCTCCTGCGTAACA GTCTCCTGCGTAACA novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195507915 195507915 + Silent SNP T T C rs71635073 bycluster TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195509563 195509563 + Missense_Mutation SNP A A T rs28605870 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195512921 195512921 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195513539 195513539 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195513540 195513540 + Silent SNP A A G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195513541 195513541 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195515026 195515026 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195538680 195538680 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195505746 195505746 + Silent SNP T T G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195505788 195505788 + Missense_Mutation SNP G G C rs2550253 bycluster;byfrequency TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195505960 195505960 + Missense_Mutation SNP G G C rs376166 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506037 195506037 + Silent SNP G G T rs78235075 bycluster;by1000genomes TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195506102 195506102 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506271 195506318 + In_Frame_Del DEL ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506271 195506318 + In_Frame_Del DEL ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC - novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506281 195506281 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506282 195506282 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506487 195506534 + In_Frame_Del DEL GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506550 195506597 + In_Frame_Del DEL GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506704 195506704 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195506747 195506747 + Missense_Mutation SNP C C T rs62282470 by1000genomes TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195506760 195506760 + Silent SNP T T A rs62282473 by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195506798 195506798 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195506798 195506798 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195507129 195507129 + Silent SNP G G T rs74201433 byfrequency;by1000genomes TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195507193 195507193 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195507215 195507262 + In_Frame_Del DEL GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195507215 195507262 + In_Frame_Del DEL GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195507852 195507852 + Silent SNP G G A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195507915 195507915 + Silent SNP T T C rs71635073 bycluster TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195507950 195507950 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195508133 195508133 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508147 195508194 + In_Frame_Del DEL GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508167 195508167 + Silent SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508175 195508175 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508178 195508178 + Missense_Mutation SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508298 195508298 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508299 195508299 + Silent SNP C C T rs2453135 bycluster TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508343 195508343 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508393 195508393 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195508415 195508462 + In_Frame_Del DEL GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508415 195508462 + In_Frame_Del DEL GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508442 195508537 + In_Frame_Del DEL CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508442 195508537 + In_Frame_Del DEL CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508452 195508452 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195508499 195508499 + Missense_Mutation SNP C C T rs62282475 by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195509031 195509078 + In_Frame_Del DEL GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195509031 195509078 + In_Frame_Del DEL GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195509374 195509374 + Missense_Mutation SNP T T G rs62282479 unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195509443 195509443 + Missense_Mutation SNP A A G rs74585045 unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195509459 195509459 + Missense_Mutation SNP T T C rs71187738 unknown;alternate_allele TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195509563 195509563 + Missense_Mutation SNP A A T rs28605870 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195509795 195509795 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510011 195510011 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510030 195510030 + Silent SNP C C G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510060 195510107 + In_Frame_Del DEL GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510060 195510107 + In_Frame_Del DEL GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510073 195510073 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510156 195510156 + Silent SNP G G A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195510636 195510636 + Intron SNP C C G rs79484109 unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195510762 195510762 + Silent SNP G G A rs2911273 bycluster;byfrequency TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195510766 195510766 + Missense_Mutation SNP G G T rs79949955 byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195510773 195510773 + Missense_Mutation SNP A A G rs2911272 bycluster;byfrequency TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195511438 195511438 + Missense_Mutation SNP G G T rs71635083 unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195511993 195511993 + Missense_Mutation SNP A A G rs3107749 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195512262 195512262 + Intron SNP C C G rs79929234 unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195512287 195512287 + Missense_Mutation SNP G G A rs113602668 bycluster TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195512302 195512302 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195512343 195512343 + Silent SNP G G A rs113457754 bycluster TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195512550 195512597 + In_Frame_Del DEL GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513158 195513158 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513398 195513398 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513445 195513445 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513491 195513491 + Missense_Mutation SNP G G T rs79338930 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513502 195513502 + Missense_Mutation SNP T T G rs75765493 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513694 195513694 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513758 195513758 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513772 195513772 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195513826 195513826 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195514998 195515045 + In_Frame_Del DEL GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195514998 195515045 + In_Frame_Del DEL GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195515290 195515290 + Intron SNP C C G rs78535324 bycluster TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195515305 195515305 + Intron SNP G G A rs13077555 by2hit2allele;alternate_allele TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195515305 195515305 + Intron SNP G G A rs13077555 by2hit2allele;alternate_allele TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC4 4585 hgsc.bcm.edu 37 3 195515413 195515413 + Missense_Mutation SNP C C T rs55868431 unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195515413 195515413 + Missense_Mutation SNP C C T rs55868431 unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195515414 195515414 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu 37 3 195515449 195515449 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC4 4585 hgsc.bcm.edu;ucsc.edu 37 3 195518160 195518160 + Intron SNP C C A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC5AC 4586 hgsc.bcm.edu 37 11 1271219 1271221 + In_Frame_Del DEL CCA CCA - novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC5AC 4586 hgsc.bcm.edu;ucsc.edu 37 11 1272232 1272232 + Intron SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC5B 727897 broad.mit.edu 37 11 1268529 1268529 + Silent SNP G A A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC5B 727897 broad.mit.edu 37 11 1275577 1275577 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC5B 727897 broad.mit.edu;hgsc.bcm.edu 37 11 1264224 1264224 + Silent SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1258216 1258216 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1264193 1264193 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 hgsc.bcm.edu 37 11 1253969 1253969 + Silent SNP A A G rs72846370 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 hgsc.bcm.edu 37 11 1258286 1258286 + Silent SNP C C T rs77996005 bycluster;byfrequency;by1000genomes TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 hgsc.bcm.edu 37 11 1271392 1271392 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 hgsc.bcm.edu 37 11 1272671 1272671 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC5B 727897 hgsc.bcm.edu 37 11 1272694 1272694 + Missense_Mutation SNP G G A rs191989562 by1000genomes TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 broad.mit.edu 37 11 1017647 1017647 + Silent SNP G T T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC6 4588 broad.mit.edu 37 11 1021245 1021245 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC6 4588 broad.mit.edu 37 11 1025856 1025856 + Silent SNP G T T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC6 4588 broad.mit.edu;hgsc.bcm.edu 37 11 1017614 1017614 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1016334 1016334 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1029578 1029578 + Silent SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 broad.mit.edu;ucsc.edu 37 11 1023622 1023622 + Missense_Mutation SNP G A A rs138887092 by1000genomes TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUC6 4588 hgsc.bcm.edu 37 11 1016991 1016991 + Missense_Mutation SNP T T G rs74788171 bycluster;byfrequency TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1017069 1017069 + Missense_Mutation SNP G G A rs80333708 bycluster;byfrequency TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1017074 1017074 + Silent SNP A A G rs79277162 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1017220 1017220 + Missense_Mutation SNP T T C rs56238842 bycluster;byfrequency TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1017440 1017440 + Silent SNP C C T rs78729877 bycluster;byfrequency TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1017797 1017797 + Silent SNP C C G rs76800954 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018048 1018048 + Missense_Mutation SNP A A G rs12787400 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018059 1018059 + Missense_Mutation SNP C C T rs78336072 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018089 1018089 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018093 1018094 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018093 1018094 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018095 1018095 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018168 1018170 + In_Frame_Del DEL TCG TCG - rs111749447 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 TCG TCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018289 1018289 + Silent SNP C C T rs77222781 unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1018289 1018289 + Silent SNP C C T rs77222781 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1018382 1018382 + Silent SNP A A G rs76138285 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu 37 11 1018390 1018390 + Missense_Mutation SNP C C A rs111785507 bycluster TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC6 4588 hgsc.bcm.edu 37 11 1018555 1018555 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUC6 4588 hgsc.bcm.edu;ucsc.edu 37 11 1018366 1018366 + Missense_Mutation SNP C C T rs76741048 bycluster;by1000genomes TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUC7 4589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71346715 71346715 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MUC7 4589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71346891 71346891 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUCL1 118430 broad.mit.edu 37 12 55250594 55250594 + Silent SNP T A A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUDENG 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 57748924 57748924 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUDENG 0 hgsc.bcm.edu 37 14 57755564 57755564 + Missense_Mutation SNP G G A rs35759976 bycluster;byfrequency;by1000genomes TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUM1 84939 broad.mit.edu 37 19 1358189 1358189 + Intron DEL A - - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUM1 84939 broad.mit.edu 37 19 1358304 1358304 + Intron SNP T C C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUM1 84939 hgsc.bcm.edu;ucsc.edu 37 19 1364542 1364542 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MUM1 84939 hgsc.bcm.edu;ucsc.edu 37 19 1369580 1369580 + RNA SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUM1L1 139221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 105450813 105450813 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MURC 347273 broad.mit.edu;hgsc.bcm.edu 37 9 103348313 103348313 + Silent SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUS81 80198 broad.mit.edu 37 11 65629418 65629418 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUT 4594 broad.mit.edu 37 6 49399240 49399240 + 3'UTR DEL T - - rs148925885 bycluster;by1000genomes TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUT 4594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49419319 49419319 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUT 4594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49425564 49425564 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUTED 0 broad.mit.edu 37 6 8015841 8015841 + 3'UTR SNP A C C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUTYH 4595 broad.mit.edu 37 1 45804224 45804224 + Intron DEL T - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MUTYH 4595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45796197 45796197 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MUTYH 4595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45796978 45796978 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MVP 9961 broad.mit.edu 37 16 29841797 29841798 + Intron INS - C C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MVP 9961 broad.mit.edu 37 16 29853112 29853112 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MVP 9961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 29858602 29858602 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MVP 9961 broad.mit.edu;ucsc.edu 37 16 29858549 29858549 + Missense_Mutation SNP G A A rs3815823 bycluster;byfrequency TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MX1 4599 hgsc.bcm.edu 37 21 42824741 42824741 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MX2 4600 hgsc.bcm.edu;ucsc.edu 37 21 42771182 42771182 + Silent SNP G G A novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MX2 4600 hgsc.bcm.edu;ucsc.edu 37 21 42778676 42778676 + Silent SNP G G A rs61730267 bycluster;byfrequency;by1000genomes TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXD1 4084 broad.mit.edu;hgsc.bcm.edu 37 2 70164321 70164321 + Intron SNP T T A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXD1 4084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70148882 70148882 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXD3 83463 broad.mit.edu 37 5 176733243 176733243 + 3'UTR SNP T C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MXD3 83463 broad.mit.edu 37 5 176738937 176738952 + 5'UTR DEL CGCCCCGCCCCCGGGA - - novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 CGCCCCGCCCCCGGGA CGCCCCGCCCCCGGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MXD4 10608 broad.mit.edu;hgsc.bcm.edu 37 4 2254186 2254186 + Silent SNP G G A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXD4 10608 hgsc.bcm.edu 37 4 2254228 2254228 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MXRA5 25878 broad.mit.edu;hgsc.bcm.edu 37 X 3235733 3235733 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXRA5 25878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 3228209 3228209 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXRA5 25878 hgsc.bcm.edu;ucsc.edu 37 X 3240485 3240494 + Frame_Shift_Del DEL TGGAGTGTGT TGGAGTGTGT - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 TGGAGTGTGT TGGAGTGTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXRA7 439921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74673741 74673741 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MXRA8 54587 broad.mit.edu 37 1 1289294 1289294 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYADM 91663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54377173 54377173 + Silent SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYB 4602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 135516962 135516962 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYB 4602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 135539120 135539120 + 3'UTR SNP A A G novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBBP1A 10514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4442824 4442824 + Silent SNP T T A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBBP1A 10514 hgsc.bcm.edu 37 17 4443760 4443760 + Missense_Mutation SNP G G A rs142989122 byfrequency TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYBL1 4603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67484765 67484765 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBL2 4605 broad.mit.edu;hgsc.bcm.edu 37 20 42343846 42343846 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYBL2 4605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 42344673 42344673 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBL2 4605 hgsc.bcm.edu 37 20 42340166 42340166 + Silent SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYBL2 4605 hgsc.bcm.edu;ucsc.edu 37 20 42340179 42340179 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBPC1 4604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 102067221 102067221 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBPC2 4606 broad.mit.edu 37 19 50962223 50962223 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYBPC2 4606 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50939919 50939919 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYBPC2 4606 hgsc.bcm.edu;ucsc.edu 37 19 50963349 50963349 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYBPC3 4607 hgsc.bcm.edu;ucsc.edu 37 11 47371574 47371574 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYBPHL 343263 hgsc.bcm.edu 37 1 109836913 109836913 + Intron SNP A A G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYBPHL 343263 hgsc.bcm.edu;ucsc.edu 37 1 109838957 109838957 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYC 4609 broad.mit.edu;hgsc.bcm.edu 37 8 128753228 128753228 + 3'UTR SNP T T G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYC 4609 hgsc.bcm.edu 37 8 128750929 128750929 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYCBP2 23077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77785318 77785318 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYCBP2 23077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77817235 77817235 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYCBP2 23077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77835374 77835374 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYCBP2 23077 broad.mit.edu;ucsc.edu 37 13 77629761 77629761 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYCBP2 23077 hgsc.bcm.edu 37 13 77714290 77714290 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYCBP2 23077 hgsc.bcm.edu;ucsc.edu 37 13 77669615 77669615 + Silent SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYCBP2 23077 hgsc.bcm.edu;ucsc.edu 37 13 77730192 77730192 + Splice_Site SNP C C A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYCBP 26292 broad.mit.edu 37 1 39338699 39338700 + Frame_Shift_Del DEL GC - - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYCBPAP 84073 hgsc.bcm.edu;ucsc.edu 37 17 48600354 48600354 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYCL1 4610 broad.mit.edu 37 1 40362819 40362819 + 3'UTR SNP G T T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYCL1 4610 broad.mit.edu 37 1 40362835 40362835 + 3'UTR DEL C - - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYCL1 4610 broad.mit.edu;hgsc.bcm.edu 37 1 40363317 40363317 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYCL1 4610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40363241 40363241 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYCN 4613 broad.mit.edu;hgsc.bcm.edu 37 2 16085629 16085629 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYCT1 80177 broad.mit.edu;hgsc.bcm.edu 37 6 153043393 153043393 + 3'UTR SNP G G A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYEF2 50804 broad.mit.edu 37 15 48433101 48433102 + 3'UTR INS - C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYEF2 50804 broad.mit.edu 37 15 48433101 48433102 + 3'UTR INS - C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYEF2 50804 broad.mit.edu 37 15 48441695 48441695 + Intron SNP T A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYEOV 26579 broad.mit.edu;ucsc.edu 37 11 69063609 69063609 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYF5 4617 broad.mit.edu;hgsc.bcm.edu 37 12 81110806 81110806 + 5'UTR SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYF6 4618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 81101549 81101549 + Silent SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYF6 4618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 81101620 81101620 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYF6 4618 hgsc.bcm.edu 37 12 81101767 81101767 + Missense_Mutation SNP C C A rs138296448 byfrequency TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH11 4629 broad.mit.edu 37 16 15797782 15797782 + 3'UTR SNP G T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH11 4629 broad.mit.edu 37 16 15843830 15843830 + Intron DEL T - - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH11 4629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15841458 15841458 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH11 4629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15854414 15854414 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH11 4629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15872668 15872668 + Silent SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH11 4629 broad.mit.edu;ucsc.edu 37 16 15826565 15826565 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH11 4629 hgsc.bcm.edu 37 16 15808800 15808800 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH11 4629 hgsc.bcm.edu;ucsc.edu 37 16 15931773 15931773 + Silent SNP G G A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH11 4629 hgsc.bcm.edu;ucsc.edu 37 16 15931906 15931906 + Missense_Mutation SNP C C A rs111777997 unknown;alternate_allele TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH11 4629 hgsc.bcm.edu;ucsc.edu 37 16 15932004 15932004 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10225010 10225010 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10247205 10247205 + Silent SNP G G T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10253892 10253892 + Silent SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10258026 10258026 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10261145 10261145 + Splice_Site SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH13 8735 hgsc.bcm.edu 37 17 10219054 10219054 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH1 4619 broad.mit.edu;hgsc.bcm.edu 37 17 10409332 10409332 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYH1 4619 broad.mit.edu;hgsc.bcm.edu 37 17 10419922 10419922 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH1 4619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10404734 10404734 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYH1 4619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10408350 10408350 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH14 79784 broad.mit.edu 37 19 50733855 50733855 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH14 79784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50753042 50753042 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH14 79784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50812921 50812921 + Silent SNP C C G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH14 79784 hgsc.bcm.edu 37 19 50762505 50762505 + Silent SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH14 79784 hgsc.bcm.edu 37 19 50813031 50813033 + In_Frame_Del DEL CAG CAG - novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH15 22989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 108117669 108117669 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH15 22989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 108205348 108205348 + Silent SNP G G C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH15 22989 hgsc.bcm.edu 37 3 108224621 108224621 + Silent SNP T T C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH15 22989 hgsc.bcm.edu;ucsc.edu 37 3 108211422 108211422 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH16 84176 broad.mit.edu 37 7 98881188 98881188 + Frame_Shift_Del DEL A - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH2 4620 broad.mit.edu;hgsc.bcm.edu 37 17 10426861 10426861 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH2 4620 broad.mit.edu;hgsc.bcm.edu 37 17 10429940 10429940 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH2 4620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10432798 10432798 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH2 4620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10442759 10442759 + Splice_Site SNP A A G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH2 4620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10447217 10447217 + Splice_Site SNP A A T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH2 4620 hgsc.bcm.edu;ucsc.edu 37 17 10427079 10427079 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH2 4620 hgsc.bcm.edu;ucsc.edu 37 17 10435069 10435069 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH3 4621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10535165 10535165 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH3 4621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10535182 10535182 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH3 4621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10551954 10551954 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH3 4621 hgsc.bcm.edu;ucsc.edu 37 17 10537344 10537344 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH3 4621 hgsc.bcm.edu;ucsc.edu 37 17 10537346 10537347 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH3 4621 hgsc.bcm.edu;ucsc.edu 37 17 10541580 10541580 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH4 4622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10351442 10351442 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH4 4622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10366258 10366258 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH4 4622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10366705 10366705 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH4 4622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10366884 10366884 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH4 4622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10369589 10369589 + Splice_Site SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH4 4622 hgsc.bcm.edu;ucsc.edu 37 17 10353952 10353952 + Silent SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH4 4622 hgsc.bcm.edu;ucsc.edu 37 17 10356638 10356638 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH6 4624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23872974 23872974 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH6 4624 hgsc.bcm.edu 37 14 23855332 23855332 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH6 4624 hgsc.bcm.edu 37 14 23865529 23865529 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH7 4625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23890215 23890215 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7 4625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23891451 23891451 + Silent SNP C C A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7 4625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23894068 23894068 + Silent SNP T T C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7 4625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23894489 23894489 + Splice_Site SNP A A T rs111726379 bycluster TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7 4625 hgsc.bcm.edu 37 14 23894488 23894488 + Intron SNP C C A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7B 57644 broad.mit.edu 37 20 33590051 33590051 + 3'UTR SNP A C C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH7B 57644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33575921 33575921 + Silent SNP C C A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7B 57644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33585398 33585398 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7B 57644 hgsc.bcm.edu 37 20 33567548 33567548 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH7B 57644 hgsc.bcm.edu 37 20 33587596 33587596 + Silent SNP G G A rs80109502 bycluster;byfrequency;by1000genomes TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH7B 57644 hgsc.bcm.edu 37 20 33587603 33587603 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH7B 57644 hgsc.bcm.edu 37 20 33589107 33589107 + Silent SNP G G A rs36003887 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYH7B 57644 hgsc.bcm.edu;ucsc.edu 37 20 33562672 33562672 + Intron SNP C C T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7B 57644 hgsc.bcm.edu;ucsc.edu 37 20 33562775 33562775 + Intron SNP G G A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH7B 57644 hgsc.bcm.edu;ucsc.edu 37 20 33567237 33567237 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH8 4626 broad.mit.edu;hgsc.bcm.edu 37 17 10309525 10309525 + Intron SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH8 4626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10299727 10299727 + Nonsense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH9 4627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 36693020 36693020 + Silent SNP C C T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYH9 4627 broad.mit.edu;ucsc.edu 37 22 36723503 36723504 + Splice_Site INS - A A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYH9 4627 hgsc.bcm.edu;ucsc.edu 37 22 36722685 36722685 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID MYL10 93408 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101256829 101256829 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL1 4632 hgsc.bcm.edu;ucsc.edu 37 2 211159133 211159133 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL2 4633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 111351119 111351119 + Missense_Mutation SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL4 4635 hgsc.bcm.edu;ucsc.edu 37 17 45291145 45291145 + Intron SNP T T C novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL5 4636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 674308 674308 + Silent SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL6 4637 broad.mit.edu 37 12 56554166 56554166 + Intron SNP T C C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYL6B 140465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56548877 56548877 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL7 58498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 44179950 44179950 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYL9 10398 broad.mit.edu 37 20 35177531 35177531 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYLIP 29116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 16146960 16146960 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK2 85366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30418677 30418677 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK3 91807 broad.mit.edu 37 16 46737996 46737997 + 3'UTR INS - T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYLK3 91807 broad.mit.edu 37 16 46741538 46741538 + 3'UTR SNP T G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYLK3 91807 broad.mit.edu 37 16 46761073 46761073 + Intron SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYLK3 91807 broad.mit.edu;hgsc.bcm.edu 37 16 46766320 46766320 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK3 91807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46743538 46743538 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK3 91807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46781877 46781877 + Missense_Mutation SNP C C T rs143624767 unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK4 340156 hgsc.bcm.edu 37 6 2685575 2685575 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYLK4 340156 hgsc.bcm.edu;ucsc.edu 37 6 2678597 2678597 + Silent SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYLK4 340156 hgsc.bcm.edu;ucsc.edu 37 6 2689126 2689126 + Silent SNP G G T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK 4638 broad.mit.edu 37 3 123376191 123376191 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYLK 4638 broad.mit.edu;hgsc.bcm.edu 37 3 123418999 123418999 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK 4638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123451941 123451941 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK 4638 hgsc.bcm.edu 37 3 123332876 123332876 + 3'UTR SNP T T G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK 4638 hgsc.bcm.edu 37 3 123411691 123411691 + Silent SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYLK 4638 hgsc.bcm.edu;ucsc.edu 37 3 123411694 123411694 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYNN 55892 broad.mit.edu;hgsc.bcm.edu 37 3 169492076 169492076 + RNA SNP A A G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYNN 55892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 169502437 169502437 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYNN 55892 broad.mit.edu;ucsc.edu 37 3 169496987 169496987 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYNN 55892 hgsc.bcm.edu 37 3 169504386 169504386 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYNN 55892 hgsc.bcm.edu;ucsc.edu 37 3 169496863 169496863 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO10 4651 broad.mit.edu 37 5 16663661 16663662 + 3'UTR INS - AT AT rs70940396 bycluster;by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO10 4651 broad.mit.edu 37 5 16671643 16671643 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO10 4651 broad.mit.edu 37 5 16674991 16674991 + Silent SNP A G G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO10 4651 broad.mit.edu 37 5 16675008 16675008 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16699579 16699579 + Missense_Mutation SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16701663 16701663 + Silent SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16711272 16711272 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16818168 16818168 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO10 4651 hgsc.bcm.edu 37 5 16668521 16668521 + Silent SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO10 4651 hgsc.bcm.edu;ucsc.edu 37 5 16763576 16763576 + Intron SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO15A 51168 broad.mit.edu 37 17 18060834 18060834 + Intron DEL C - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18044110 18044110 + Silent SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18049342 18049342 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18055188 18055188 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18062259 18062259 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO15A 51168 hgsc.bcm.edu 37 17 18022777 18022777 + Silent SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO15A 51168 hgsc.bcm.edu 37 17 18057187 18057187 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO15A 51168 hgsc.bcm.edu;ucsc.edu 37 17 18082103 18082103 + Silent SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO16 23026 broad.mit.edu 37 13 109859336 109859337 + 3'UTR DEL GT - - rs111750738 unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO16 23026 broad.mit.edu 37 13 109859336 109859337 + 3'UTR DEL GT - - rs111750738 unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO16 23026 broad.mit.edu 37 13 109859345 109859354 + 3'UTR DEL TGTGTGTGTT - - rs149740940 bycluster;by1000genomes TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 TGTGTGTGTT TGTGTGTGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO16 23026 broad.mit.edu;hgsc.bcm.edu 37 13 109707989 109707989 + Intron SNP T T G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109535457 109535457 + Silent SNP T T C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109672228 109672228 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109817265 109817265 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109859148 109859148 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO16 23026 broad.mit.edu;ucsc.edu 37 13 109779862 109779862 + Missense_Mutation SNP G A A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO16 23026 hgsc.bcm.edu 37 13 109318342 109318342 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO18A 399687 broad.mit.edu 37 17 27401310 27401311 + 3'UTR DEL AA - - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO18A 399687 broad.mit.edu;hgsc.bcm.edu 37 17 27493028 27493028 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18A 399687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27409435 27409435 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18A 399687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27417116 27417116 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18A 399687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27438508 27438508 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18A 399687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27438520 27438520 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18A 399687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27438794 27438794 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18A 399687 hgsc.bcm.edu;ucsc.edu 37 17 27417887 27417887 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO18B 84700 broad.mit.edu;hgsc.bcm.edu 37 22 26164741 26164741 + Silent SNP A A T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO18B 84700 broad.mit.edu;hgsc.bcm.edu 37 22 26422488 26422488 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO18B 84700 broad.mit.edu;ucsc.edu 37 22 26272193 26272193 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO18B 84700 hgsc.bcm.edu;ucsc.edu 37 22 26291196 26291196 + Silent SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID MYO18B 84700 hgsc.bcm.edu;ucsc.edu 37 22 26348307 26348307 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID MYO19 80179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34857066 34857066 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1A 4640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57437906 57437906 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1B 4430 broad.mit.edu 37 2 192288741 192288741 + 3'UTR SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO1B 4430 broad.mit.edu 37 2 192289178 192289178 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO1B 4430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192214900 192214900 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO1B 4430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192228923 192228923 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1B 4430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192250811 192250811 + Splice_Site SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO1C 4641 hgsc.bcm.edu;ucsc.edu 37 17 1382903 1382903 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1D 4642 broad.mit.edu;hgsc.bcm.edu 37 17 30986144 30986144 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1D 4642 hgsc.bcm.edu 37 17 31099875 31099875 + Intron SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO1E 4643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59464119 59464119 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1E 4643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59470597 59470597 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1E 4643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59506883 59506883 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1E 4643 hgsc.bcm.edu 37 15 59528837 59528837 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO1F 4542 broad.mit.edu;hgsc.bcm.edu 37 19 8606866 8606866 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1F 4542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8592225 8592225 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1F 4542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8595162 8595162 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO1F 4542 hgsc.bcm.edu 37 19 8612963 8612963 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO1G 64005 broad.mit.edu;ucsc.edu 37 7 45005737 45005737 + Missense_Mutation SNP T A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO1G 64005 hgsc.bcm.edu 37 7 45009718 45009718 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO1G 64005 hgsc.bcm.edu;ucsc.edu 37 7 45011770 45011770 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO1H 283446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109826583 109826583 + Silent SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO3A 53904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 26313006 26313006 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO3A 53904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 26377305 26377305 + Silent SNP G G T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO3A 53904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 26414398 26414398 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO3A 53904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 26417412 26417412 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO3A 53904 broad.mit.edu;ucsc.edu 37 10 26377180 26377180 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO3A 53904 broad.mit.edu;ucsc.edu 37 10 26463158 26463158 + Missense_Mutation SNP G T T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO3A 53904 hgsc.bcm.edu 37 10 26385321 26385321 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO3A 53904 hgsc.bcm.edu 37 10 26385321 26385321 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO3A 53904 hgsc.bcm.edu 37 10 26385322 26385322 + Silent SNP T T C novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO3A 53904 hgsc.bcm.edu;ucsc.edu 37 10 26359336 26359336 + Splice_Region SNP A A C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO3A 53904 hgsc.bcm.edu;ucsc.edu 37 10 26491897 26491897 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID MYO3B 140469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 171243748 171243748 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO5A 4644 broad.mit.edu 37 15 52602052 52602053 + 3'UTR DEL TG - - rs5812595 unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5A 4644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52645836 52645836 + Missense_Mutation SNP A A C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5A 4644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52646191 52646191 + Silent SNP T T G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5A 4644 broad.mit.edu;ucsc.edu 37 15 52720650 52720650 + Silent SNP C G G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5A 4644 hgsc.bcm.edu;ucsc.edu 37 15 52720682 52720682 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO5B 4645 broad.mit.edu 37 18 47352665 47352666 + 3'UTR INS - A A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5B 4645 broad.mit.edu 37 18 47352665 47352666 + 3'UTR INS - A A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5B 4645 broad.mit.edu 37 18 47352665 47352666 + 3'UTR INS - A A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5B 4645 broad.mit.edu 37 18 47352665 47352666 + 3'UTR INS - A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5B 4645 broad.mit.edu 37 18 47352733 47352733 + 3'UTR SNP G T T rs112174362 bycluster TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5B 4645 broad.mit.edu 37 18 47363917 47363917 + Missense_Mutation SNP A G G rs138128932 unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5B 4645 broad.mit.edu;hgsc.bcm.edu 37 18 47432966 47432966 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5B 4645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47438527 47438527 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5B 4645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47463681 47463681 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5B 4645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47500800 47500800 + Silent SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5B 4645 hgsc.bcm.edu;ucsc.edu 37 18 47369724 47369724 + Missense_Mutation SNP G G T rs67244969 bycluster;by1000genomes TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO5B 4645 hgsc.bcm.edu;ucsc.edu 37 18 47518664 47518664 + Silent SNP G G C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO5C 55930 broad.mit.edu 37 15 52497502 52497502 + Intron DEL C - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO5C 55930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52510811 52510811 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO5C 55930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52521378 52521378 + Silent SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO5C 55930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52539694 52539694 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYO5C 55930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52571772 52571772 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO5C 55930 hgsc.bcm.edu;ucsc.edu 37 15 52505431 52505431 + Silent SNP T T C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO6 4646 broad.mit.edu 37 6 76604578 76604578 + Intron SNP A G G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO6 4646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 76570739 76570739 + Splice_Site SNP G G C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO6 4646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 76591436 76591436 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO7A 4647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76893001 76893001 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO7A 4647 hgsc.bcm.edu;ucsc.edu 37 11 76873961 76873961 + Silent SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO7B 4648 broad.mit.edu 37 2 128394875 128394876 + Intron INS - A A rs59579995 bycluster;by1000genomes TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO7B 4648 broad.mit.edu 37 2 128394875 128394876 + Intron INS - A A rs59579995 bycluster;by1000genomes TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO7B 4648 hgsc.bcm.edu 37 2 128380888 128380888 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO9A 4649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72300251 72300251 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO9A 4649 hgsc.bcm.edu;ucsc.edu 37 15 72190127 72190127 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYO9B 4650 broad.mit.edu 37 19 17306197 17306197 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYO9B 4650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17212688 17212688 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYO9B 4650 hgsc.bcm.edu 37 19 17311226 17311226 + Missense_Mutation SNP G G A rs117099942 byfrequency;by1000genomes TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOC 4653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171605694 171605694 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOCD 93649 broad.mit.edu 37 17 12569403 12569403 + 5'UTR SNP A C C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYOCD 93649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 12647585 12647585 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOF 26509 broad.mit.edu 37 10 95066678 95066678 + 3'UTR SNP T C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYOF 26509 broad.mit.edu;hgsc.bcm.edu 37 10 95093560 95093560 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOF 26509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 95076526 95076526 + Silent SNP G G C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOF 26509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 95148802 95148802 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOF 26509 hgsc.bcm.edu;ucsc.edu 37 10 95139669 95139669 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOM1 8736 broad.mit.edu;hgsc.bcm.edu 37 18 3155065 3155065 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYOM1 8736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 3089566 3089566 + Silent SNP T T C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYOM1 8736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 3135721 3135721 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOM1 8736 hgsc.bcm.edu;ucsc.edu 37 18 3154964 3154964 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID MYOM2 9172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 2005831 2005831 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOM2 9172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 2020501 2020501 + Silent SNP G G A rs137913055 unknown;alternate_allele TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOM2 9172 hgsc.bcm.edu 37 8 2064039 2064039 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYOM2 9172 hgsc.bcm.edu;ucsc.edu 37 8 2033423 2033423 + Silent SNP C C T rs144162836 byfrequency TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYOM3 127294 broad.mit.edu 37 1 24408447 24408447 + Intron SNP C A A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYOM3 127294 broad.mit.edu 37 1 24410862 24410862 + Intron SNP T A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYOM3 127294 broad.mit.edu 37 1 24434680 24434680 + Intron DEL C - - rs144450023 by1000genomes TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYOM3 127294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24419478 24419478 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOM3 127294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24432548 24432548 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOM3 127294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24434560 24434560 + Silent SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOT 9499 broad.mit.edu;hgsc.bcm.edu 37 5 137213306 137213306 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOT 9499 broad.mit.edu;hgsc.bcm.edu 37 5 137223116 137223116 + 3'UTR SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOT 9499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137222571 137222571 + Silent SNP T T A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYOZ1 58529 hgsc.bcm.edu 37 10 75393823 75393823 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYPN 84665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69881502 69881502 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYPN 84665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69926368 69926368 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYPN 84665 hgsc.bcm.edu;ucsc.edu 37 10 69925513 69925513 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYSM1 114803 broad.mit.edu 37 1 59154367 59154367 + Intron DEL C - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYSM1 114803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 59125681 59125681 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST1 0 broad.mit.edu;hgsc.bcm.edu 37 16 31141808 31141808 + Silent SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31142592 31142592 + 3'UTR SNP C C T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST2 0 broad.mit.edu 37 17 47899078 47899078 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYST2 0 broad.mit.edu 37 17 47904994 47904994 + 3'UTR SNP G T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYST2 0 broad.mit.edu;hgsc.bcm.edu 37 17 47895315 47895315 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST3 0 broad.mit.edu 37 8 41800216 41800216 + Intron SNP T G G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYST3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 41792289 41792289 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 41804117 41804117 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 41836218 41836218 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST3 0 broad.mit.edu;ucsc.edu 37 8 41791800 41791800 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYST4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 76748798 76748798 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq MYST4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 76790353 76790353 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYST4 0 hgsc.bcm.edu;ucsc.edu 37 10 76788380 76788380 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID MYST4 0 hgsc.bcm.edu;ucsc.edu 37 10 76788758 76788758 + Silent SNP A A G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID MYT1 4661 broad.mit.edu 37 20 62839353 62839353 + Silent SNP A G G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MYT1 4661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62850364 62850364 + Silent SNP G G A rs142303893 unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYT1 4661 hgsc.bcm.edu 37 20 62863561 62863561 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYT1 4661 hgsc.bcm.edu;ucsc.edu 37 20 62839567 62839567 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYT1L 23040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1926721 1926721 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYT1L 23040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1927018 1927018 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYT1L 23040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1983506 1983506 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYT1L 23040 hgsc.bcm.edu 37 2 1946773 1946773 + Silent SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq MYT1L 23040 hgsc.bcm.edu;ucsc.edu 37 2 1921063 1921063 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MYT1L 23040 hgsc.bcm.edu;ucsc.edu 37 2 1926319 1926319 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID MZF1 7593 broad.mit.edu 37 19 59073897 59073897 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx MZT1 440145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 73293134 73293134 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP1 9683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48596270 48596270 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP1 9683 hgsc.bcm.edu;ucsc.edu 37 16 48595382 48595382 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP1 9683 hgsc.bcm.edu;ucsc.edu 37 16 48595915 48595918 + Frame_Shift_Del DEL TGTT TGTT - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 TGTT TGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP1 9683 hgsc.bcm.edu;ucsc.edu 37 16 48596217 48596217 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID N4BP2 55728 broad.mit.edu 37 4 40121716 40121716 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx N4BP2 55728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 40122527 40122527 + Silent SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq N4BP2L2 10443 broad.mit.edu 37 13 33101400 33101400 + Intron SNP A G G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx N4BP2L2 10443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33016602 33016602 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP2L2 10443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33110320 33110320 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP2L2 10443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33110645 33110645 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP3 23138 broad.mit.edu;hgsc.bcm.edu 37 5 177549014 177549014 + 3'UTR SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N4BP3 23138 hgsc.bcm.edu;ucsc.edu 37 5 177545395 177545395 + Intron SNP G G T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID N6AMT1 29104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30255320 30255320 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq N6AMT2 221143 hgsc.bcm.edu;ucsc.edu 37 13 21306082 21306082 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA10 8260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153196257 153196257 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAA10 8260 broad.mit.edu 37 X 153197360 153197360 + Intron SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAA11 84779 hgsc.bcm.edu;ucsc.edu 37 4 80246576 80246576 + Silent SNP C C A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA15 80155 hgsc.bcm.edu 37 4 140280992 140280992 + Silent SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA15 80155 hgsc.bcm.edu;ucsc.edu 37 4 140282956 140282956 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA15 80155 hgsc.bcm.edu;ucsc.edu 37 4 140297620 140297620 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA16 79612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41932483 41932483 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAA20 51126 hgsc.bcm.edu;ucsc.edu 37 20 20006327 20006327 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAA25 80018 hgsc.bcm.edu 37 12 112516503 112516503 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA25 80018 hgsc.bcm.edu;ucsc.edu 37 12 112498998 112498998 + Silent SNP A A G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA35 60560 hgsc.bcm.edu;ucsc.edu 37 9 88631485 88631485 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAA38 51691 hgsc.bcm.edu 37 7 117825676 117825676 + Intron SNP C C G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAAA 27163 hgsc.bcm.edu 37 4 76839898 76839898 + Intron SNP T T G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAAA 27163 hgsc.bcm.edu 37 4 76839898 76839898 + Intron SNP T T G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAALAD2 10003 broad.mit.edu 37 11 89925063 89925063 + 3'UTR DEL T - - novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAALAD2 10003 broad.mit.edu 37 11 89925063 89925063 + 3'UTR DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAALAD2 10003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 89907078 89907078 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAALADL1 10004 broad.mit.edu 37 11 64812680 64812680 + 3'UTR SNP A G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAALADL1 10004 broad.mit.edu;hgsc.bcm.edu 37 11 64822097 64822097 + Silent SNP C C A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAALADL2 254827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 174815003 174815003 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAB1 4664 broad.mit.edu 37 2 191555228 191555228 + 3'UTR SNP A C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAB1 4664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191524231 191524231 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAB1 4664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191550288 191550288 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAB1 4664 hgsc.bcm.edu 37 2 191524675 191524675 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAB2 4665 broad.mit.edu 37 12 57485457 57485457 + Silent SNP T C C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAB2 4665 hgsc.bcm.edu 37 12 57485235 57485235 + Silent SNP G G C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAB2 4665 hgsc.bcm.edu 37 12 57486952 57486952 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAB2 4665 hgsc.bcm.edu;ucsc.edu 37 12 57485620 57485620 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NACA 4666 broad.mit.edu 37 12 57113130 57113130 + Intron SNP A T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NACA 4666 broad.mit.edu;hgsc.bcm.edu 37 12 57110097 57110097 + Silent SNP G G A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NACA 4666 broad.mit.edu;hgsc.bcm.edu 37 12 57118311 57118311 + 5'UTR SNP A A C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NACA 4666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57112266 57112266 + Silent SNP A A G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NACA 4666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57114669 57114669 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NACAD 23148 hgsc.bcm.edu;ucsc.edu 37 7 45120732 45120734 + In_Frame_Del DEL ACC ACC - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 ACC ACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NACAP1 83955 broad.mit.edu 37 8 102381717 102381717 + 3'UTR SNP C T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NACC1 112939 broad.mit.edu 37 19 13249317 13249317 + 3'UTR SNP C G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAF1 92345 broad.mit.edu 37 4 164087992 164087992 + 5'UTR SNP C T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAF1 92345 broad.mit.edu;hgsc.bcm.edu 37 4 164087855 164087855 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAF1 92345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 164050071 164050071 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAF1 92345 broad.mit.edu;ucsc.edu 37 4 164050358 164050358 + Silent SNP A G G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAGA 4668 broad.mit.edu;hgsc.bcm.edu 37 22 42456227 42456227 + 3'UTR SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAGK 55577 broad.mit.edu;hgsc.bcm.edu 37 2 71299785 71299785 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAGK 55577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71299849 71299849 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAGS 162417 broad.mit.edu 37 17 42083124 42083124 + Silent SNP T C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAIP 4671 hgsc.bcm.edu 37 5 70308462 70308462 + Missense_Mutation SNP C C A rs147757754 unknown;alternate_allele TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NALCN 259232 broad.mit.edu;hgsc.bcm.edu 37 13 101717877 101717877 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NALCN 259232 broad.mit.edu;hgsc.bcm.edu 37 13 101720364 101720364 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NALCN 259232 broad.mit.edu;hgsc.bcm.edu 37 13 101763549 101763549 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NALCN 259232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 101720287 101720287 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NALCN 259232 hgsc.bcm.edu 37 13 101714442 101714442 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NALCN 259232 hgsc.bcm.edu;ucsc.edu 37 13 101797201 101797201 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NALCN 259232 hgsc.bcm.edu;ucsc.edu 37 13 101944628 101944628 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NANOG 79923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7947298 7947298 + Silent SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NANS 54187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100843297 100843297 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NANS 54187 hgsc.bcm.edu 37 9 100845161 100845161 + Missense_Mutation SNP C C T rs143794024 unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAP1L2 4674 hgsc.bcm.edu;ucsc.edu 37 X 72432980 72432980 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAP1L3 4675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 92927545 92927545 + Silent SNP T T C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAP1L3 4675 hgsc.bcm.edu 37 X 92928035 92928036 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAP1L4 4676 broad.mit.edu 37 11 2973236 2973236 + Intron SNP A T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAP1L4 4676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 2992733 2992733 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAP1L4 4676 hgsc.bcm.edu;ucsc.edu 37 11 2997279 2997279 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAPB 63908 broad.mit.edu 37 20 23356142 23356144 + 3'UTR DEL TAT - - rs148611575 bycluster;by1000genomes TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 TAT TAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAPB 63908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23377799 23377799 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAPEPLD 222236 broad.mit.edu 37 7 102743799 102743799 + Intron SNP T C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAPEPLD 222236 broad.mit.edu 37 7 102768831 102768831 + Intron SNP C G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAPEPLD 222236 broad.mit.edu 37 7 102782275 102782275 + Intron SNP G A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAPRT1 93100 broad.mit.edu;hgsc.bcm.edu 37 8 144657686 144657686 + Missense_Mutation SNP C C A rs148462517 byfrequency;alternate_allele TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAPRT1 93100 hgsc.bcm.edu 37 8 144658711 144658711 + Silent SNP G G A rs872935 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAPRT1 93100 hgsc.bcm.edu;ucsc.edu 37 8 144657613 144657613 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAPSA 9476 broad.mit.edu 37 19 50868922 50868922 + 5'UTR SNP T C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAPSA 9476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50862276 50862276 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAPSA 9476 hgsc.bcm.edu;ucsc.edu 37 19 50868793 50868793 + Intron SNP T T C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAPSB 256236 broad.mit.edu 37 19 50838347 50838347 + 5'UTR SNP C T T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NARF 26502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80436689 80436689 + Silent SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARF 26502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80443460 80443460 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARF 26502 hgsc.bcm.edu;ucsc.edu 37 17 80430448 80430448 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NARFL 64428 broad.mit.edu 37 16 782508 782508 + Intron SNP G A A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NARG2 79664 broad.mit.edu 37 15 60734524 60734524 + Intron SNP A C C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NARG2 79664 broad.mit.edu 37 15 60770238 60770238 + 5'UTR SNP A C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NARG2 79664 broad.mit.edu;hgsc.bcm.edu 37 15 60734582 60734582 + Intron SNP A A T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARG2 79664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 60740179 60740179 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARS2 79731 broad.mit.edu 37 11 78147613 78147613 + 3'UTR SNP T C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NARS2 79731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78154737 78154737 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARS2 79731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78176959 78176959 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARS2 79731 hgsc.bcm.edu 37 11 78277313 78277313 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NARS2 79731 hgsc.bcm.edu;ucsc.edu 37 11 78152161 78152161 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NASP 4678 hgsc.bcm.edu 37 1 46073362 46073362 + Missense_Mutation SNP A A G rs75187774 bycluster TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NASP 4678 hgsc.bcm.edu 37 1 46073373 46073373 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NASP 4678 hgsc.bcm.edu;ucsc.edu 37 1 46083164 46083164 + Silent SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAT10 55226 hgsc.bcm.edu 37 11 34160752 34160752 + Silent SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAT10 55226 hgsc.bcm.edu;ucsc.edu 37 11 34158576 34158576 + Splice_Region SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAT14 57106 broad.mit.edu 37 19 55998035 55998035 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAT15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3533548 3533548 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3533549 3533549 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT1 9 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 18079815 18079815 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT2 10 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 18258243 18258243 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT2 10 hgsc.bcm.edu 37 8 18258036 18258036 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAT8 9027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73868095 73868095 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT8 9027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73868466 73868467 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT8 9027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73868603 73868603 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT8B 51471 hgsc.bcm.edu;ucsc.edu 37 2 73928331 73928331 + Silent SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT9 26151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72769713 72769713 + Splice_Site SNP A A G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAT9 26151 broad.mit.edu;ucsc.edu 37 17 72769778 72769778 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAT9 26151 hgsc.bcm.edu;ucsc.edu 37 17 72769044 72769044 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAV1 89796 broad.mit.edu 37 1 201792492 201792493 + 3'UTR DEL GT - - rs4025040 unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV1 89796 broad.mit.edu 37 1 201792492 201792493 + 3'UTR DEL GT - - rs4025040 unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV1 89796 broad.mit.edu 37 1 201792498 201792499 + 3'UTR INS - TA TA rs4025038 bycluster;by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV1 89796 broad.mit.edu;hgsc.bcm.edu 37 1 201789098 201789098 + 3'UTR SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV1 89796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201687817 201687817 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV1 89796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201751584 201751584 + Silent SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV1 89796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201779747 201779747 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV1 89796 hgsc.bcm.edu 37 1 201772833 201772833 + Silent SNP A A G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV2 89797 broad.mit.edu 37 11 19372436 19372436 + 5'UTR SNP T C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV2 89797 broad.mit.edu 37 11 20139938 20139938 + 3'UTR SNP C A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV2 89797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19735259 19735259 + Silent SNP C C A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV2 89797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19955242 19955242 + Silent SNP C C A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV2 89797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19955243 19955243 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV2 89797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20124911 20124911 + Silent SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV2 89797 broad.mit.edu;ucsc.edu 37 11 20078104 20078104 + Silent SNP C T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV2 89797 hgsc.bcm.edu 37 11 20044717 20044717 + Intron SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAV2 89797 hgsc.bcm.edu;ucsc.edu 37 11 20104550 20104550 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78362323 78362323 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78400326 78400326 + Silent SNP C C G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78400974 78400974 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78401106 78401106 + Silent SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78516003 78516003 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78553024 78553024 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NAV3 89795 broad.mit.edu;ucsc.edu 37 12 78392214 78392214 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NAV3 89795 hgsc.bcm.edu 37 12 78400503 78400503 + Silent SNP T T C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NAV3 89795 hgsc.bcm.edu 37 12 78401149 78401149 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBAS 51594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 15564514 15564514 + Missense_Mutation SNP C C A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBAS 51594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 15607839 15607839 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBAS 51594 hgsc.bcm.edu;ucsc.edu 37 2 15326915 15326915 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBAS 51594 hgsc.bcm.edu;ucsc.edu 37 2 15468417 15468417 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBEA 26960 broad.mit.edu 37 13 35738588 35738588 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBEA 26960 broad.mit.edu 37 13 36246099 36246099 + 3'UTR DEL T - - rs34364482 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBEA 26960 broad.mit.edu;hgsc.bcm.edu 37 13 36046544 36046544 + Silent SNP G G T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBEA 26960 broad.mit.edu;hgsc.bcm.edu 37 13 36220480 36220480 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBEA 26960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 35747666 35747668 + In_Frame_Del DEL TCT TCT - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBEA 26960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 35770236 35770236 + Frame_Shift_Del DEL T T - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBEA 26960 hgsc.bcm.edu;ucsc.edu 37 13 35758117 35758117 + Silent SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBEAL1 65065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 204002984 204002984 + Silent SNP A A T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBEAL1 65065 broad.mit.edu;ucsc.edu 37 2 204045216 204045217 + Frame_Shift_Del DEL GT - - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBEAL1 65065 hgsc.bcm.edu 37 2 203976709 203976709 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBEAL1 65065 hgsc.bcm.edu 37 2 204039911 204039911 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBEAL2 23218 broad.mit.edu 37 3 47038048 47038048 + Silent SNP G A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBEAL2 23218 broad.mit.edu 37 3 47043759 47043759 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBEAL2 23218 broad.mit.edu;ucsc.edu 37 3 47037324 47037324 + Silent SNP C G G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBEAL2 23218 hgsc.bcm.edu 37 3 47050126 47050126 + Silent SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBN 4683 broad.mit.edu;ucsc.edu 37 8 90955480 90955481 + Splice_Site DEL CC - - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBN 4683 hgsc.bcm.edu 37 8 90983413 90983413 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NBPF10 100132406 broad.mit.edu 37 1 145209324 145209332 + 5'UTR DEL GGCGGCGGC - - novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 GGCGGCGGC GGCGGCGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145293212 145293212 + 5'Flank SNP G C C rs4382783 by2hit2allele TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145293212 145293212 + 5'Flank SNP G C C rs4382783 by2hit2allele TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + 5'Flank SNP G A A rs75226570 unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + 5'Flank SNP G A A rs75226570 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + 5'Flank SNP G A A rs75226570 unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145296448 145296448 + Missense_Mutation SNP T A A rs78828650 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145301802 145301802 + Silent SNP C G G rs6690575 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145302695 145302695 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145302696 145302696 + Silent SNP C G G rs74428101 unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145311931 145311931 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145323656 145323656 + Missense_Mutation SNP A T T rs75252120 bycluster;byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145323666 145323666 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 145323667 145323667 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 146398399 146398399 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 146398422 146398422 + Silent SNP G A A rs61804605 unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 146398425 146398425 + Missense_Mutation SNP C A A rs61804604 unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 146398425 146398425 + Missense_Mutation SNP C A A rs61804604 unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 146398425 146398425 + Missense_Mutation SNP C A A rs61804604 unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF10 100132406 broad.mit.edu 37 1 146420167 146420167 + Missense_Mutation SNP G A A rs61812001 unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 broad.mit.edu 37 1 148004265 148004265 + 3'UTR SNP T C C rs75200021 unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 broad.mit.edu 37 1 148004409 148004409 + 3'UTR SNP T C C rs4067623 unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 broad.mit.edu 37 1 148004465 148004465 + 3'UTR SNP T A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 broad.mit.edu 37 1 148004475 148004475 + 3'UTR SNP C G G rs75687371 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 broad.mit.edu 37 1 148004475 148004475 + 3'UTR SNP C G G rs75687371 byfrequency TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 broad.mit.edu 37 1 148004487 148004487 + 3'UTR SNP T A A rs711765 unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF14 25832 hgsc.bcm.edu 37 1 148004722 148004722 + Silent SNP C C T rs138813155 byfrequency TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF14 25832 hgsc.bcm.edu 37 1 148021592 148021592 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF1 55672 broad.mit.edu 37 1 16892549 16892549 + Intron SNP G A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918653 16918653 + Splice_Site SNP C T T rs75226570 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918693 16918693 + 5'UTR SNP A T T rs12134336 byfrequency TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918717 16918717 + 5'UTR SNP C T T rs3872321 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918717 16918717 + 5'UTR SNP C T T rs3872321 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918727 16918727 + 5'UTR SNP G C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918727 16918727 + 5'UTR SNP G C C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918727 16918727 + 5'UTR SNP G C C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918727 16918727 + 5'UTR SNP G C C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918734 16918734 + 5'UTR SNP G C C rs3928093 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16918783 16918783 + 5'UTR SNP C T T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16932109 16932109 + Intron DEL A - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16933655 16933662 + Intron DEL GGAGGGAA - - novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 GGAGGGAA GGAGGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu 37 1 16939401 16939401 + Intron SNP C A A rs656418 by2hit2allele TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF1 55672 broad.mit.edu;hgsc.bcm.edu 37 1 16913638 16913638 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBPF1 55672 hgsc.bcm.edu 37 1 16890598 16890598 + Missense_Mutation SNP T T A rs71228893 unknown;alternate_allele TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF1 55672 hgsc.bcm.edu 37 1 16892547 16892547 + Intron SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBPF22P 285622 broad.mit.edu 37 5 85578601 85578601 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF3 84224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21795329 21795329 + Silent SNP C C G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C G C C Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq NBPF3 84224 hgsc.bcm.edu 37 1 21798206 21798206 + Silent SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21806631 21806631 + Silent SNP G G T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21806704 21806704 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21806710 21806710 + Missense_Mutation SNP T T A rs71512986 unknown;alternate_allele TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21808099 21808099 + Silent SNP A A G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21808126 21808126 + Silent SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21808126 21808126 + Silent SNP G G A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21808128 21808128 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21808128 21808128 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21808250 21808250 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21809709 21809709 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF3 84224 hgsc.bcm.edu 37 1 21809750 21809750 + Silent SNP T C C rs2651399 bycluster;byfrequency;bysubmitter TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF4 148545 hgsc.bcm.edu 37 1 108775036 108775036 + Missense_Mutation SNP A A C rs12654463 bycluster;byhapmap TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF4 148545 hgsc.bcm.edu 37 1 108777900 108777900 + Missense_Mutation SNP C C T rs61799407 byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF4 148545 hgsc.bcm.edu 37 1 108786261 108786261 + Silent SNP T T C rs6697615 bycluster TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF7 343505 hgsc.bcm.edu 37 1 120384017 120384017 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF7 343505 hgsc.bcm.edu 37 1 120384017 120384017 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF7 343505 hgsc.bcm.edu;ucsc.edu 37 1 120384043 120384043 + Silent SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBPF9 400818 broad.mit.edu 37 1 144220807 144220807 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144220807 144220807 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144220807 144220807 + Missense_Mutation SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144220850 144220850 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144519342 144519343 + Intron INS - A A rs71273684 unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144597567 144597568 + Intron INS - A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144615246 144615247 + Splice_Site INS - AG AG novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144618201 144618201 + Missense_Mutation SNP T C C rs61809737 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144813815 144813815 + Silent SNP A G G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144813815 144813815 + Silent SNP A G G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144813824 144813824 + Silent SNP G C C rs77446849 byfrequency TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144815953 144815953 + Missense_Mutation SNP A G G rs79736150 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144815968 144815968 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144828610 144828610 + Silent SNP T G G rs76444116 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144828807 144828807 + 3'UTR SNP A G G rs76022554 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144829025 144829025 + Intron SNP A G G rs17159365 byfrequency TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144829025 144829025 + Intron SNP A G G rs17159365 byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144829025 144829025 + Intron SNP A G G rs17159365 byfrequency TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144829025 144829025 + Intron SNP A G G rs17159365 byfrequency TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144829052 144829052 + Intron SNP C T T rs28612347 unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 broad.mit.edu 37 1 144829067 144829067 + Intron SNP A G G rs75200021 unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NBPF9 400818 hgsc.bcm.edu 37 1 144615250 144615251 + Frame_Shift_Ins INS - - AA novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBPF9 400818 hgsc.bcm.edu 37 1 144615250 144615251 + Frame_Shift_Ins INS - - AA novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBPF9 400818 hgsc.bcm.edu 37 1 144618201 144618201 + Silent SNP T T C rs61809737 byfrequency;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBR1 4077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41341626 41341626 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBR1 4077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41343513 41343513 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBR1 4077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41345527 41345527 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBR1 4077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41349125 41349125 + Splice_Site SNP T T C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NBR1 4077 hgsc.bcm.edu;ucsc.edu 37 17 41327859 41327859 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NBR1 4077 hgsc.bcm.edu;ucsc.edu 37 17 41345367 41345367 + Silent SNP C C G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAM1 4684 broad.mit.edu 37 11 113146345 113146346 + 3'UTR INS - A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAM1 4684 broad.mit.edu 37 11 113147816 113147818 + 3'UTR DEL GAT - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 GAT GAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAM1 4684 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 113133587 113133587 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAM1 4684 hgsc.bcm.edu 37 11 113140927 113140927 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAM2 4685 broad.mit.edu 37 21 22370819 22370819 + 5'UTR SNP G A A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAM2 4685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 22664427 22664427 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAM2 4685 hgsc.bcm.edu;ucsc.edu 37 21 22652947 22652947 + Silent SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAM2 4685 hgsc.bcm.edu;ucsc.edu 37 21 22656694 22656694 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAN 1463 broad.mit.edu;hgsc.bcm.edu 37 19 19351391 19351391 + Intron SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAN 1463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19329806 19329806 + Silent SNP G G A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAN 1463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19329874 19329874 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPD2 9918 broad.mit.edu 37 12 6640670 6640670 + 3'UTR DEL T - - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAPD2 9918 broad.mit.edu 37 12 6640670 6640670 + 3'UTR DEL T - - novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAPD2 9918 broad.mit.edu 37 12 6640678 6640678 + 3'UTR SNP A T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAPD2 9918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6619242 6619242 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPD3 23310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134029917 134029917 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPD3 23310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134062791 134062791 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPD3 23310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134079245 134079245 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPD3 23310 hgsc.bcm.edu 37 11 134023027 134023027 + Splice_Region SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAPD3 23310 hgsc.bcm.edu 37 11 134051037 134051037 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAPD3 23310 hgsc.bcm.edu;ucsc.edu 37 11 134046230 134046230 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAPG2 54892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 158447311 158447311 + Silent SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPG2 54892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 158447321 158447321 + Silent SNP T T C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPG2 54892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 158472689 158472689 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPG2 54892 hgsc.bcm.edu;ucsc.edu 37 7 158457439 158457439 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPG 64151 broad.mit.edu;hgsc.bcm.edu 37 4 17819616 17819616 + Silent SNP C C G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPG 64151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 17819025 17819026 + Frame_Shift_Ins INS - - AA novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPG 64151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 17826669 17826670 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPH2 29781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50954874 50954874 + Splice_Site SNP A A C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPH2 29781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50956419 50956419 + Silent SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPH2 29781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50960439 50960439 + Missense_Mutation SNP G G A rs117383090 by1000genomes TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPH2 29781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50960640 50960640 + Missense_Mutation SNP A A C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPH2 29781 hgsc.bcm.edu 37 22 50961541 50961541 + Silent SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAPH2 29781 hgsc.bcm.edu;ucsc.edu 37 22 50960440 50960440 + Silent SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCAPH 23397 broad.mit.edu 37 2 97024978 97024978 + Intron SNP A C C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAPH 23397 broad.mit.edu 37 2 97024978 97024978 + Intron SNP A C C novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCAPH 23397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97024901 97024901 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCAPH 23397 hgsc.bcm.edu;ucsc.edu 37 2 97020027 97020027 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCBP1 4686 hgsc.bcm.edu;ucsc.edu 37 9 100409780 100409780 + Silent SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCBP2 22916 broad.mit.edu 37 3 196664216 196664216 + Intron DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCCRP1 342897 hgsc.bcm.edu;ucsc.edu 37 19 39688861 39688861 + Silent SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCDN 23154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36026446 36026446 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCEH1 57552 broad.mit.edu;hgsc.bcm.edu 37 3 172365895 172365895 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCF1 653361 broad.mit.edu;hgsc.bcm.edu 37 7 74191683 74191683 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCF1C 654817 broad.mit.edu 37 7 74573755 74573755 + Nonsense_Mutation SNP G T T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCF2 4688 broad.mit.edu 37 1 183524978 183524979 + 3'UTR INS - GAA GAA rs34035622 bycluster;byfrequency;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCF2 4688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183532672 183532672 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCKAP1 10787 hgsc.bcm.edu;ucsc.edu 37 2 183806831 183806831 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCKAP1 10787 hgsc.bcm.edu;ucsc.edu 37 2 183867773 183867773 + Intron SNP T T A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCKAP1L 3071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54893217 54893217 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCKAP1L 3071 hgsc.bcm.edu 37 12 54925591 54925591 + Silent SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCKAP1L 3071 hgsc.bcm.edu;ucsc.edu 37 12 54914587 54914587 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCKAP5 344148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 133539879 133539879 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCKAP5 344148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 133540313 133540313 + Silent SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCKAP5 344148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 133541011 133541011 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCKAP5 344148 broad.mit.edu;ucsc.edu 37 2 133540492 133540492 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCKAP5L 57701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50190216 50190216 + Missense_Mutation SNP A A C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCKAP5L 57701 broad.mit.edu 37 12 50197831 50197831 + 5'UTR SNP G A A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCKIPSD 51517 hgsc.bcm.edu 37 3 48720358 48720358 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCL 4691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232321358 232321358 + Silent SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCL 4691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232322358 232322358 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCL 4691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232323070 232323070 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCL 4691 hgsc.bcm.edu 37 2 232325415 232325417 + In_Frame_Del DEL TCA TCA - rs139777351 bycluster;by1000genomes TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 TCA TCA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCLN 56926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3192504 3192504 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA1 8648 hgsc.bcm.edu 37 2 24990934 24990934 + Intron SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOA1 8648 hgsc.bcm.edu;ucsc.edu 37 2 24929598 24929598 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA1 8648 hgsc.bcm.edu;ucsc.edu 37 2 24933874 24933874 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOA2 10499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 71050557 71050557 + Silent SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA2 10499 hgsc.bcm.edu;ucsc.edu 37 8 71068322 71068322 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA2 10499 hgsc.bcm.edu;ucsc.edu 37 8 71069452 71069452 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46252829 46252829 + Splice_Site SNP T T C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46256718 46256718 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46268421 46268421 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46277767 46277767 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 hgsc.bcm.edu 37 20 46279866 46279866 + Silent SNP A A G rs28529067 bycluster;byfrequency;by1000genomes TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 hgsc.bcm.edu 37 20 46279866 46279866 + Silent SNP A A G rs28529067 bycluster;byfrequency;by1000genomes TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA3 8202 hgsc.bcm.edu;ucsc.edu 37 20 46265231 46265231 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOA4 8031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 51582253 51582253 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA4 8031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 51582263 51582263 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA4 8031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 51584968 51584968 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA5 57727 broad.mit.edu;hgsc.bcm.edu 37 20 44692013 44692013 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA5 57727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44693847 44693847 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA6 23054 broad.mit.edu 37 20 33302801 33302803 + 3'UTR DEL CAT - - rs73622022 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 CAT CAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCOA6 23054 broad.mit.edu 37 20 33345744 33345744 + Silent SNP C T T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCOA6 23054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33328813 33328813 + Silent SNP C C A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA6 23054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33329729 33329729 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA6 23054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33337368 33337368 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA6 23054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33337408 33337408 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA6 23054 hgsc.bcm.edu 37 20 33345744 33345744 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOA6 23054 hgsc.bcm.edu 37 20 33356290 33356290 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOA6 23054 hgsc.bcm.edu;ucsc.edu 37 20 33337538 33337538 + Silent SNP A A G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15952284 15952284 + Silent SNP T T G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15961009 15961009 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15964798 15964798 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15965052 15965052 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 16021256 16021256 + Silent SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 hgsc.bcm.edu 37 17 15974762 15974762 + Silent SNP G G A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 hgsc.bcm.edu 37 17 16068362 16068362 + Silent SNP C C T rs76375524 unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOR1 9611 hgsc.bcm.edu 37 17 16068396 16068396 + Missense_Mutation SNP G G A rs150910818 unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOR1 9611 hgsc.bcm.edu 37 17 16097825 16097825 + Missense_Mutation SNP T T G rs73281920 bycluster TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR1 9611 hgsc.bcm.edu;ucsc.edu 37 17 16041529 16041529 + Splice_Region SNP G G T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOR2 9612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124839984 124839984 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR2 9612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124841254 124841254 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR2 9612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124858994 124858994 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR2 9612 broad.mit.edu;ucsc.edu 37 12 124968161 124968161 + Missense_Mutation SNP C A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCOR2 9612 hgsc.bcm.edu 37 12 124817812 124817812 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCOR2 9612 hgsc.bcm.edu 37 12 124887093 124887093 + Silent SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCOR2 9612 hgsc.bcm.edu 37 12 124887096 124887096 + Silent SNP T T C rs28690647 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCR2 9436 hgsc.bcm.edu 37 6 41304036 41304036 + Silent SNP T T C novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCRNA00164 0 broad.mit.edu 37 2 132905792 132905792 + RNA SNP G C C rs189049364 unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCRNA00164 0 broad.mit.edu 37 2 132911119 132911119 + RNA SNP T A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCRNA00164 0 broad.mit.edu 37 2 132912316 132912316 + RNA SNP G A A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCRNA00164 0 broad.mit.edu 37 2 132912341 132912341 + RNA SNP C T T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCRNA00174 0 hgsc.bcm.edu 37 7 65842544 65842544 + 3'UTR SNP G G A rs71523758 unknown;alternate_allele TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCRNA00174 0 hgsc.bcm.edu 37 7 65842544 65842544 + 3'UTR SNP G G A rs71523758 unknown;alternate_allele TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NCRNA00176 0 broad.mit.edu 37 20 62669916 62669917 + Intron INS - CCGGG CCGGG novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCRNA00219 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 111496807 111496807 + RNA SNP A A G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00219 0 broad.mit.edu 37 5 111496885 111496885 + 3'UTR SNP T C C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NCRNA00221(dist=132018) 0 hgsc.bcm.edu 37 14 107083547 107083547 + IGR SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=144006) 0 hgsc.bcm.edu 37 14 107095535 107095535 + IGR SNP G G C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=162213) 0 hgsc.bcm.edu 37 14 107113742 107113742 + IGR SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=162516) 0 hgsc.bcm.edu 37 14 107114045 107114045 + IGR SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=61551) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 107013080 107013080 + IGR SNP C C T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=83204) 0 hgsc.bcm.edu;ucsc.edu 37 14 107034733 107034733 + IGR SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=83438) 0 hgsc.bcm.edu 37 14 107034967 107034967 + IGR SNP T T C rs72686844 bycluster;by1000genomes TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=83491) 0 hgsc.bcm.edu 37 14 107035020 107035020 + IGR SNP C C T rs75660488 bycluster TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=83491) 0 hgsc.bcm.edu;ucsc.edu 37 14 107035020 107035020 + IGR SNP C C T rs75660488 bycluster TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00221(dist=83611) 0 hgsc.bcm.edu;ucsc.edu 37 14 107035140 107035140 + IGR SNP G G C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00226(dist=121468) 0 hgsc.bcm.edu 37 14 106866434 106866434 + IGR SNP C C T rs79672195 byfrequency TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00226(dist=12754) 0 broad.mit.edu;hgsc.bcm.edu 37 14 106757720 106757720 + IGR SNP T T A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00226(dist=132870) 0 hgsc.bcm.edu 37 14 106877836 106877836 + IGR SNP C C T rs143740707 by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00226(dist=181277) 0 hgsc.bcm.edu;ucsc.edu 37 14 106926243 106926243 + IGR SNP A A T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00226(dist=46165) 0 hgsc.bcm.edu 37 14 106791131 106791131 + IGR SNP A A G rs10148460 bycluster;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCRNA00226(dist=84778) 0 hgsc.bcm.edu 37 14 106829744 106829744 + IGR SNP C C A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NCSTN 23385 hgsc.bcm.edu 37 1 160313253 160313253 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDC80 10403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2616501 2616501 + Silent SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDC80 10403 hgsc.bcm.edu 37 18 2587917 2587917 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDC80 10403 hgsc.bcm.edu;ucsc.edu 37 18 2608738 2608738 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDE1 54820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15761201 15761201 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDE1 54820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15761202 15761202 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDFIP1 80762 hgsc.bcm.edu 37 5 141517333 141517333 + Silent SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDFIP1 80762 hgsc.bcm.edu;ucsc.edu 37 5 141520137 141520137 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDFIP2 54602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 80094986 80094986 + Silent SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDN 4692 broad.mit.edu;hgsc.bcm.edu 37 15 23931882 23931882 + Silent SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDN 4692 broad.mit.edu;hgsc.bcm.edu 37 15 23932263 23932263 + Silent SNP C C T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDNL2 56160 broad.mit.edu 37 15 29560840 29560840 + 3'UTR DEL A - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDP 4693 broad.mit.edu;ucsc.edu 37 X 43809267 43809267 + Silent SNP C A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDRG1 10397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 134256644 134256644 + Intron SNP G G T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDRG1 10397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 134270635 134270635 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDRG1 10397 hgsc.bcm.edu;ucsc.edu 37 8 134296522 134296522 + Silent SNP A A T novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDRG2 57447 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21486946 21486946 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDRG3 57446 hgsc.bcm.edu 37 20 35335429 35335429 + Intron SNP A A C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDRG4 65009 broad.mit.edu 37 16 58540057 58540062 + Intron DEL TGTGTC - - rs72227893 unknown;alternate_allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 TGTGTC TGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDRG4 65009 broad.mit.edu 37 16 58540057 58540062 + Intron DEL TGTGTC - - rs72227893 unknown;alternate_allele TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 TGTGTC TGTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDRG4 65009 broad.mit.edu 37 16 58540061 58540062 + Intron DEL TC - - rs72499708 bycluster;by1000genomes TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDRG4 65009 hgsc.bcm.edu 37 16 58542877 58542877 + Silent SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDST1 3340 broad.mit.edu 37 5 149919109 149919109 + Intron DEL T - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDST1 3340 broad.mit.edu 37 5 149933065 149933065 + 3'UTR SNP C G G novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDST1 3340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149932854 149932854 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDST1 3340 hgsc.bcm.edu 37 5 149921139 149921139 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDST2 8509 broad.mit.edu 37 10 75562102 75562102 + 3'UTR SNP G T T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDST2 8509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75563696 75563696 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDST2 8509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75567375 75567375 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDST4 64579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 115769372 115769372 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDST4 64579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 115858556 115858556 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDST4 64579 hgsc.bcm.edu;ucsc.edu 37 4 115997895 115997895 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFA10 4705 broad.mit.edu 37 2 240960806 240960806 + Missense_Mutation SNP C A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFA10 4705 hgsc.bcm.edu 37 2 240958036 240958036 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFA13 51079 broad.mit.edu 37 19 19627139 19627139 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFA13 51079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19626874 19626874 + upstream SNP G G T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA13 51079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19637065 19637065 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA1 4694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119005873 119005873 + 5'UTR SNP A A C novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA1 4694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119005937 119005937 + Silent SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA2 4695 broad.mit.edu 37 5 140027216 140027216 + 5'UTR SNP T C C rs778593 bycluster;byfrequency;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFA3 4696 hgsc.bcm.edu 37 19 54610140 54610140 + Missense_Mutation SNP C C G rs144531279 unknown;alternate_allele TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFA4 4697 broad.mit.edu 37 7 10973217 10973217 + 3'UTR SNP C T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFA4L2 56901 hgsc.bcm.edu 37 12 57630850 57630860 + Frame_Shift_Del DEL CAAGACTGGCT CAAGACTGGCT - novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 CAAGACTGGCT CAAGACTGGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA4L2 56901 hgsc.bcm.edu 37 12 57630850 57630860 + Frame_Shift_Del DEL CAAGACTGGCT CAAGACTGGCT - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 CAAGACTGGCT CAAGACTGGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA5 4698 broad.mit.edu 37 7 123196626 123196626 + Intron SNP A G G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFA6 4700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42482196 42482196 + Silent SNP G G A rs150607291 byfrequency TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFA6 4700 hgsc.bcm.edu;ucsc.edu 37 22 42482291 42482291 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFA7 4701 broad.mit.edu 37 19 8376344 8376344 + 3'UTR DEL A - - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFA7 4701 hgsc.bcm.edu 37 19 8381465 8381465 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFAF1 51103 broad.mit.edu;hgsc.bcm.edu 37 15 41679610 41679610 + 3'UTR SNP T T C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFAF1 51103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41689026 41689026 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFAF2 91942 broad.mit.edu 37 5 60241050 60241050 + 5'UTR SNP G A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFAF3 25915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49059885 49059885 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFAF3 25915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49059963 49059963 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFB6 4712 broad.mit.edu 37 9 32553603 32553606 + 3'UTR DEL AAAC - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 AAAC AAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFB6 4712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32571008 32571008 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFB6 4712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32571039 32571039 + Silent SNP T T C rs146518353 by1000genomes TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFB6(dist=46976) 0 hgsc.bcm.edu;ucsc.edu 37 9 32620158 32620158 + IGR SNP C C T rs547864 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFB6(dist=48455) 0 hgsc.bcm.edu 37 9 32621637 32621637 + IGR SNP A A G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFB9 4715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125562076 125562076 + Silent SNP T T A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFC1 4717 hgsc.bcm.edu 37 4 140216900 140216900 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFC1 4717 hgsc.bcm.edu;ucsc.edu 37 4 140216207 140216209 + In_Frame_Del DEL AAG AAG - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFS1 4719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 206997774 206997774 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFS1 4719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207008817 207008817 + Silent SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NDUFS1 4719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207011714 207011714 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFS1 4719 hgsc.bcm.edu;ucsc.edu 37 2 206994925 206994925 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM SOLID NDUFS2 4720 hgsc.bcm.edu 37 1 161183974 161183974 + Silent SNP A A T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFS2 4720 hgsc.bcm.edu;ucsc.edu 37 1 161183209 161183209 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFS3 4722 broad.mit.edu 37 11 47602207 47602207 + Intron SNP C T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFS3 4722 broad.mit.edu 37 11 47602672 47602672 + Intron SNP A T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFS3 4722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47602127 47602127 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFS5 4725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39494463 39494463 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NDUFS8 4728 broad.mit.edu;ucsc.edu 37 11 67799656 67799656 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NDUFV2 4729 hgsc.bcm.edu 37 18 9117867 9117867 + Missense_Mutation SNP T T C rs906807 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NDUFV3 4731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 44323941 44323941 + Silent SNP A A G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEB 4703 broad.mit.edu 37 2 152346999 152346999 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx NEB 4703 broad.mit.edu 37 2 152436113 152436113 + Intron SNP A C C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEB 4703 broad.mit.edu 37 2 152547140 152547140 + Intron SNP G T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEB 4703 broad.mit.edu;hgsc.bcm.edu 37 2 152397301 152397301 + Silent SNP T T C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152348619 152348619 + Silent SNP A A C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152352797 152352797 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A A G A A Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152362014 152362014 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T T - T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152476170 152476170 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152529113 152529113 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152548582 152548582 + Silent SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152551064 152551064 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEB 4703 broad.mit.edu;ucsc.edu 37 2 152553192 152553192 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEB 4703 hgsc.bcm.edu 37 2 152467134 152467134 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEB 4703 hgsc.bcm.edu 37 2 152554080 152554080 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEB 4703 hgsc.bcm.edu;ucsc.edu 37 2 152347020 152347020 + Missense_Mutation SNP C C A rs139333406 by1000genomes;alternate_allele TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NEB 4703 hgsc.bcm.edu;ucsc.edu 37 2 152552137 152552137 + Silent SNP A A T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEB 4703 hgsc.bcm.edu;ucsc.edu 37 2 152580850 152580850 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NEBL 10529 broad.mit.edu 37 10 21074611 21074611 + 3'UTR SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEBL 10529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 21076186 21076186 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEBL 10529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 21124510 21124510 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEBL 10529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 21158725 21158725 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEBL 10529 hgsc.bcm.edu;ucsc.edu 37 10 21098771 21098771 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NECAB1 64168 broad.mit.edu;hgsc.bcm.edu 37 8 91962067 91962067 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NECAB2 54550 hgsc.bcm.edu 37 16 84005808 84005808 + Intron SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NECAB2 54550 hgsc.bcm.edu 37 16 84005808 84005808 + Intron SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NECAP2 55707 hgsc.bcm.edu;ucsc.edu 37 1 16775619 16775619 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEDD1 121441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 97303613 97303613 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEDD1 121441 hgsc.bcm.edu 37 12 97303545 97303545 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEDD4 4734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56208025 56208025 + Silent SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEDD4 4734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56208589 56208589 + Silent SNP A A G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEDD4 4734 broad.mit.edu;ucsc.edu 37 15 56140568 56140568 + Splice_Site DEL A - - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEDD4 4734 hgsc.bcm.edu 37 15 56126438 56126438 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEDD4 4734 hgsc.bcm.edu 37 15 56130290 56130290 + Intron SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEDD4L 23327 broad.mit.edu;hgsc.bcm.edu 37 18 56033230 56033230 + Splice_Site SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEDD4L 23327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55992365 55992365 + Silent SNP G G A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEDD8 4738 broad.mit.edu;hgsc.bcm.edu 37 14 24687305 24687305 + Intron SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEDD9 4739 broad.mit.edu;ucsc.edu 37 6 11213548 11213548 + Missense_Mutation SNP A G G rs111447705 unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEDD9 4739 hgsc.bcm.edu;ucsc.edu 37 6 11185683 11185684 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 broad.mit.edu;hgsc.bcm.edu 37 22 29879399 29879399 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885572 29885573 + In_Frame_Ins INS - - CCCTGAGAAGGCCAAGTC novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885575 29885576 + In_Frame_Ins INS - - TGAGAAGGCCAAGTCCCC novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885577 29885578 + In_Frame_Ins INS - - AGAAGGCCAAGTCCCCTG novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885580 29885581 + In_Frame_Ins INS - - AGGCCAAGTCCCCTGAGA novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885580 29885581 + In_Frame_Ins INS - - AGGCCAAGTCCCCTGAGA novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885582 29885583 + In_Frame_Ins INS - - GCCAAGTCCCCTGAGAAG novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885586 29885587 + In_Frame_Ins INS - - AGTCCCCTGAGAAGGCCA novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885587 29885588 + In_Frame_Ins INS - - GTCCCCTGAGAAGGCCAA novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885589 29885590 + In_Frame_Ins INS - - CCCCTGAGAAGGCCAAGT novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885591 29885592 + In_Frame_Ins INS - - CCTGAGAAGGCCAAGTCC novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFH 4744 hgsc.bcm.edu 37 22 29885593 29885594 + In_Frame_Ins INS - - TGAGAAGGCCAAGTCCCC rs59279731 bycluster TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEFM 4741 broad.mit.edu 37 8 24775663 24775663 + Silent SNP G A A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEFM 4741 broad.mit.edu 37 8 24775663 24775663 + Silent SNP G A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEFM 4741 broad.mit.edu 37 8 24775663 24775663 + Silent SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEGR1 257194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 72400804 72400804 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEGR1 257194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 72748110 72748110 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEGR1 257194 hgsc.bcm.edu;ucsc.edu 37 1 71873192 71873192 + Silent SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEIL3 55247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 178283613 178283613 + Silent SNP T T A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK10 152110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27332981 27332982 + Frame_Shift_Ins INS - - AA novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK10 152110 hgsc.bcm.edu 37 3 27338698 27338698 + Missense_Mutation SNP T T C rs141057699 by1000genomes TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEK10 152110 hgsc.bcm.edu 37 3 27350480 27350480 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEK11 79858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130748629 130748629 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEK11 79858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130992364 130992364 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NEK1 4750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 170510619 170510619 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK1 4750 hgsc.bcm.edu;ucsc.edu 37 4 170321451 170321451 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK3 4752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52709999 52709999 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK3 4752 hgsc.bcm.edu;ucsc.edu 37 13 52707349 52707349 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEK5 341676 broad.mit.edu 37 13 52639390 52639390 + 3'UTR SNP G C C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEK5 341676 broad.mit.edu;hgsc.bcm.edu 37 13 52661584 52661584 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK5 341676 hgsc.bcm.edu 37 13 52682544 52682544 + Splice_Region SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEK5 341676 hgsc.bcm.edu;ucsc.edu 37 13 52649897 52649897 + Silent SNP T T C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEK6 10783 broad.mit.edu 37 9 127055176 127055176 + Intron SNP A C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEK7 140609 broad.mit.edu 37 1 198290067 198290068 + 3'UTR DEL CC - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEK9 91754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75553771 75553771 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEK9 91754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75583974 75583974 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NELL1 4745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 21250960 21250960 + Silent SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NELL2 4753 broad.mit.edu;hgsc.bcm.edu 37 12 44917251 44917251 + Silent SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NELL2 4753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 44915937 44915937 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NENF 29937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212619210 212619210 + Silent SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEO1 4756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73575304 73575304 + Splice_Site SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEO1 4756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73585755 73585755 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEO1 4756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73590937 73590937 + Silent SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NES 10763 broad.mit.edu 37 1 156646329 156646329 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NES 10763 hgsc.bcm.edu 37 1 156640157 156640157 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NES 10763 hgsc.bcm.edu 37 1 156642149 156642149 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NES 10763 hgsc.bcm.edu 37 1 156642149 156642149 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NES 10763 hgsc.bcm.edu;ucsc.edu 37 1 156641414 156641414 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NET1 10276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5494480 5494480 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NET1 10276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5498060 5498060 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NETO1 81832 broad.mit.edu 37 18 70502440 70502440 + Intron SNP T C C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NETO1 81832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 70417575 70417575 + Silent SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NETO2 81831 hgsc.bcm.edu;ucsc.edu 37 16 47165915 47165915 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEU1 4758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31828358 31828358 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEU3 10825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74717078 74717078 + Silent SNP A A T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEURL3 93082 broad.mit.edu 37 2 97166139 97166139 + Frame_Shift_Del DEL C - - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEURL3 93082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97164150 97164150 + RNA SNP T T C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEURL4 84461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7224466 7224466 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEURL4 84461 hgsc.bcm.edu 37 17 7224230 7224230 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEURL4 84461 hgsc.bcm.edu 37 17 7226057 7226057 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEURL4 84461 hgsc.bcm.edu 37 17 7229846 7229846 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEURL4 84461 hgsc.bcm.edu;ucsc.edu 37 17 7222420 7222420 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEURL4 84461 hgsc.bcm.edu;ucsc.edu 37 17 7224890 7224890 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEURL 9148 broad.mit.edu 37 10 105344764 105344764 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEURL 9148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105330649 105330649 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEUROD1 4760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 182542705 182542705 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEUROD1 4760 hgsc.bcm.edu 37 2 182542619 182542619 + Silent SNP G G C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEUROD1 4760 hgsc.bcm.edu 37 2 182542619 182542619 + Silent SNP G G C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEUROD1 4760 hgsc.bcm.edu 37 2 182542656 182542657 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEUROD2 4761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37762561 37762561 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEUROD6 63974 hgsc.bcm.edu;ucsc.edu 37 7 31378184 31378184 + Silent SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NEUROG2 63973 hgsc.bcm.edu 37 4 113435835 113435835 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NEXN 91624 broad.mit.edu 37 1 78398877 78398877 + Intron DEL A - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NEXN 91624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78383401 78383401 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29556075 29556075 + Silent SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NF1 4763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29664584 29664584 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NF1 4763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29684022 29684022 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NF1 4763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29687570 29687570 + Nonsense_Mutation SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NF1 4763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29687577 29687577 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NF1 4763 hgsc.bcm.edu 37 17 29528456 29528456 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A A G A A Unknown Unknown Somatic Phase_I Capture 454 SOLID NF1 4763 hgsc.bcm.edu;ucsc.edu 37 17 29508512 29508512 + Splice_Region SNP G G T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NF1 4763 hgsc.bcm.edu;ucsc.edu 37 17 29665755 29665755 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NF1 4763 hgsc.bcm.edu;ucsc.edu 37 17 29670103 29670103 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID NF2 4771 broad.mit.edu 37 22 30093987 30093987 + 3'UTR DEL C - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NF2 4771 broad.mit.edu;hgsc.bcm.edu 37 22 30050715 30050715 + Splice_Site SNP G G C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NF2 4771 broad.mit.edu;hgsc.bcm.edu 37 22 30079118 30079118 + 3'UTR SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NF2 4771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30032866 30032867 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NF2 4771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30067836 30067836 + Nonsense_Mutation SNP C C T rs74315499 bycluster TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NF2 4771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30074218 30074218 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFAM1 150372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42807545 42807546 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFASC 23114 broad.mit.edu 37 1 204966574 204966574 + Intron SNP C G G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFASC 23114 broad.mit.edu;hgsc.bcm.edu 37 1 204955082 204955082 + Silent SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFASC 23114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204943409 204943409 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFASC 23114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204971726 204971726 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFASC 23114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204971841 204971841 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFASC 23114 hgsc.bcm.edu;ucsc.edu 37 1 204957785 204957785 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFAT5 10725 broad.mit.edu 37 16 69729377 69729378 + Intron DEL AT - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFAT5 10725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69681465 69681465 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFAT5 10725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69725994 69725994 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFAT5 10725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69725995 69725995 + Nonsense_Mutation SNP C C A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFAT5 10725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69727140 69727140 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFAT5 10725 hgsc.bcm.edu 37 16 69726498 69726498 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFAT5 10725 hgsc.bcm.edu 37 16 69726498 69726498 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFAT5 10725 hgsc.bcm.edu 37 16 69727924 69727924 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFATC1 4772 broad.mit.edu;hgsc.bcm.edu 37 18 77170523 77170523 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC1 4772 hgsc.bcm.edu 37 18 77211777 77211777 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFATC2 4773 broad.mit.edu;ucsc.edu 37 20 50092197 50092197 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFATC3 4775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68156583 68156583 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC3 4775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68160480 68160480 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC3 4775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68208354 68208354 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC3 4775 broad.mit.edu;ucsc.edu 37 16 68224816 68224816 + Silent SNP T A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFATC3 4775 hgsc.bcm.edu 37 16 68225473 68225473 + Silent SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFATC3 4775 hgsc.bcm.edu;ucsc.edu 37 16 68200896 68200896 + Silent SNP A A T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFATC4 4776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24839730 24839730 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC4 4776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24845237 24845237 + Silent SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC4 4776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24845299 24845299 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFATC4 4776 hgsc.bcm.edu 37 14 24842419 24842419 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFATC4 4776 hgsc.bcm.edu 37 14 24845849 24845850 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFE2L1 4779 broad.mit.edu 37 17 46137399 46137399 + 3'UTR DEL C - - novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFE2L1 4779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46134732 46134732 + Silent SNP A A T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFE2L1 4779 broad.mit.edu;ucsc.edu 37 17 46128663 46128663 + Silent SNP C A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFE2L1 4779 broad.mit.edu;ucsc.edu 37 17 46135813 46135813 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFE2L2 4780 broad.mit.edu 37 2 178095480 178095480 + 3'UTR SNP A T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu 37 2 178097099 178097099 + Intron SNP A A G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098799 178098799 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098803 178098803 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098956 178098956 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098960 178098960 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NFE2L2 4780 hgsc.bcm.edu;ucsc.edu 37 2 178096052 178096052 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID NFE2L2 4780 hgsc.bcm.edu;ucsc.edu 37 2 178098945 178098945 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM SOLID NFE2L3 9603 broad.mit.edu;hgsc.bcm.edu 37 7 26225394 26225394 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFIA 4774 broad.mit.edu 37 1 61921199 61921199 + 3'UTR DEL A - - rs57270124 bycluster;alternate_allele TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFIA 4774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 61743222 61743222 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFIA(dist=174117) 0 hgsc.bcm.edu;ucsc.edu 37 1 62102577 62102577 + IGR SNP G G A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFIB 4781 hgsc.bcm.edu;ucsc.edu 37 9 14307384 14307385 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFIX 4784 broad.mit.edu;hgsc.bcm.edu 37 19 13136046 13136046 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFIX 4784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 13192531 13192531 + Silent SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFIX 4784 hgsc.bcm.edu 37 19 13189496 13189496 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFKB1 4790 hgsc.bcm.edu 37 4 103528456 103528456 + Missense_Mutation SNP G G A rs111293796 unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFKBIB 4793 broad.mit.edu 37 19 39399197 39399199 + Intron DEL AAG - - novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFKBIB 4793 hgsc.bcm.edu 37 19 39390845 39390845 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFKBID 84807 hgsc.bcm.edu 37 19 36387710 36387711 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFKBIL1 4795 hgsc.bcm.edu 37 6 31525512 31525512 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFKBIZ 64332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 101570960 101570960 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFKBIZ 64332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 101573504 101573504 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFKBIZ 64332 hgsc.bcm.edu 37 3 101576021 101576021 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFKBIZ 64332 hgsc.bcm.edu;ucsc.edu 37 3 101571994 101571994 + Silent SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFRKB 4798 broad.mit.edu;hgsc.bcm.edu 37 11 129754640 129754640 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFRKB 4798 hgsc.bcm.edu 37 11 129743673 129743674 + Frame_Shift_Ins INS - - G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFRKB 4798 hgsc.bcm.edu;ucsc.edu 37 11 129739926 129739926 + Silent SNP T T A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFS1 9054 broad.mit.edu 37 20 34257346 34257346 + 3'UTR SNP G A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFS1 9054 broad.mit.edu;hgsc.bcm.edu 37 20 34285610 34285610 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFS1 9054 hgsc.bcm.edu;ucsc.edu 37 20 34285709 34285709 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFU1 27247 hgsc.bcm.edu 37 2 69650833 69650833 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFU1 27247 hgsc.bcm.edu;ucsc.edu 37 2 69650750 69650751 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFX1 4799 broad.mit.edu 37 9 33351750 33351750 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFXL1 152518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47850290 47850290 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFXL1 152518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47880552 47880552 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFXL1 152518 hgsc.bcm.edu;ucsc.edu 37 4 47877157 47877157 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFXL1 152518 hgsc.bcm.edu;ucsc.edu 37 4 47877194 47877194 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFXL1 152518 hgsc.bcm.edu;ucsc.edu 37 4 47892656 47892656 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NFYA 4800 broad.mit.edu 37 6 41065225 41065225 + 3'UTR SNP G T T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NFYB 4801 hgsc.bcm.edu;ucsc.edu 37 12 104513551 104513551 + Intron SNP A A T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NFYC 4802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41218906 41218906 + Silent SNP T T G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NGB 58157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77733013 77733013 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NGF 4803 broad.mit.edu 37 1 115828691 115828691 + Nonstop_Mutation SNP T G G novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NGF 4803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115829228 115829228 + Silent SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NGFR 4804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 47587945 47587945 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NGLY1 55768 broad.mit.edu;hgsc.bcm.edu 37 3 25824816 25824816 + Silent SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NGRN 51335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90815014 90815014 + Silent SNP A A G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NGRN 51335 hgsc.bcm.edu;ucsc.edu 37 15 90815002 90815005 + Frame_Shift_Del DEL CTTC CTTC - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 CTTC CTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHEDC1 0 hgsc.bcm.edu 37 4 103822483 103822484 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHEDC1 0 hgsc.bcm.edu 37 4 103822483 103822484 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHEDC2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 103947531 103947531 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHEDC2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 103988700 103988700 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHEDC2 0 broad.mit.edu;ucsc.edu 37 4 103971409 103971409 + Silent SNP A G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NHEJ1 79840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219942000 219942000 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHLH1 4807 broad.mit.edu 37 1 160341681 160341681 + 3'UTR DEL A - - rs112378041 unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NHLRC2 374354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115614767 115614767 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHLRC2 374354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115664580 115664580 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHLRC2 374354 hgsc.bcm.edu;ucsc.edu 37 10 115636591 115636591 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHP2 55651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 177576774 177576774 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHP2L1 4809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42071041 42071041 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHS 4810 broad.mit.edu 37 X 17653571 17653571 + Intron SNP T C C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NHS 4810 broad.mit.edu;hgsc.bcm.edu 37 X 17742451 17742451 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NHS 4810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17745608 17745608 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NHS 4810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17746842 17746842 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NHS 4810 hgsc.bcm.edu;ucsc.edu 37 X 17745494 17745494 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHSL1 57224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 138753025 138753025 + Silent SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHSL1 57224 hgsc.bcm.edu;ucsc.edu 37 6 138754603 138754603 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NHSL2 340527 broad.mit.edu 37 X 71264802 71264802 + Intron SNP T C C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NHSL2 340527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71358471 71358471 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHSL2 340527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71359245 71359245 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHSL2 340527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71360504 71360504 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NHSL2 340527 hgsc.bcm.edu;ucsc.edu 37 X 71343542 71343542 + Intron SNP C C A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NICN1 84276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49466658 49466658 + Silent SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NID1 4811 broad.mit.edu 37 1 236192916 236192916 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NID1 4811 hgsc.bcm.edu 37 1 236143954 236143954 + Splice_Site SNP C C T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NID2 22795 broad.mit.edu;hgsc.bcm.edu 37 14 52534720 52534720 + Silent SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NID2 22795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 52472479 52472479 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIF3L1 60491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201761932 201761932 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIF3L1 60491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201768224 201768224 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIN 51199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 51224783 51224783 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIN 51199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 51259502 51259502 + Silent SNP A A C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIN 51199 hgsc.bcm.edu 37 14 51206109 51206109 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NINJ2 4815 broad.mit.edu 37 12 675059 675059 + Intron SNP T C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NINJ2 4815 broad.mit.edu 37 12 753283 753283 + Intron DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NINL 22981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 25442206 25442206 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NINL 22981 hgsc.bcm.edu 37 20 25436414 25436421 + Frame_Shift_Del DEL ATGTTCTT ATGTTCTT - novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 ATGTTCTT ATGTTCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NINL 22981 hgsc.bcm.edu 37 20 25436414 25436421 + Frame_Shift_Del DEL ATGTTCTT ATGTTCTT - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 ATGTTCTT ATGTTCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NINL 22981 hgsc.bcm.edu 37 20 25457050 25457055 + In_Frame_Del DEL CTCCCA CTCCCA - rs68078266 bycluster;by1000genomes TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 CTCCCA CTCCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPA1 123606 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 23048907 23048907 + Silent SNP C C G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPA1 123606 hgsc.bcm.edu;ucsc.edu 37 15 23049093 23049095 + In_Frame_Del DEL GAT GAT - novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 GAT GAT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NIPA2 81614 broad.mit.edu 37 15 23006147 23006147 + 3'UTR SNP T A A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NIPA2 81614 hgsc.bcm.edu 37 15 23006304 23006304 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPAL3 57185 broad.mit.edu 37 1 24795816 24795816 + 3'UTR DEL G - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NIPAL3 57185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24766690 24766690 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPAL4 348938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156899742 156899742 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPBL 25836 broad.mit.edu;hgsc.bcm.edu 37 5 37044460 37044460 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPBL 25836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36985915 36985915 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPBL 25836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37006527 37006527 + Silent SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NIPBL 25836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37020560 37020560 + Splice_Site SNP G G T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIPBL 25836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37022178 37022178 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NIPBL 25836 hgsc.bcm.edu 37 5 37051934 37051934 + Silent SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NIPBL 25836 hgsc.bcm.edu;ucsc.edu 37 5 36955611 36955611 + Silent SNP T T A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID NIPBL 25836 hgsc.bcm.edu;ucsc.edu 37 5 37064853 37064853 + Silent SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NIPSNAP3B 55335 broad.mit.edu 37 9 107537232 107537233 + Intron INS - AG AG novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NIPSNAP3B 55335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107528730 107528730 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NISCH 11188 hgsc.bcm.edu 37 3 52504925 52504925 + Splice_Site SNP T T A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NIT1 4817 broad.mit.edu 37 1 161088477 161088477 + Intron SNP C G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NIT1 4817 hgsc.bcm.edu;ucsc.edu 37 1 161089670 161089683 + Frame_Shift_Del DEL GCCTATGTGTGAAA GCCTATGTGTGAAA - novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 GCCTATGTGTGAAA GCCTATGTGTGAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIT2 56954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 100058770 100058770 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIT2 56954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 100059917 100059917 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NIT2 56954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 100059918 100059918 + Silent SNP C C T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKAIN1 79570 hgsc.bcm.edu 37 1 31654716 31654716 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NKAIN2 154215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 124979381 124979381 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKAIN2 154215 hgsc.bcm.edu;ucsc.edu 37 6 124979433 124979433 + Silent SNP C C T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NKAIN3 286183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 63492147 63492147 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKAIN3 286183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 63831061 63831061 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKAIN3 286183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 63902748 63902748 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKAP 79576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119077352 119077352 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKAP 79576 hgsc.bcm.edu;ucsc.edu 37 X 119059315 119059315 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NKAPL 222698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28227271 28227271 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKD1 85407 broad.mit.edu 37 16 50667707 50667708 + 3'UTR INS - C C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKD1 85407 broad.mit.edu 37 16 50668529 50668530 + 3'UTR DEL CA - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKD1 85407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50583388 50583388 + Silent SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKD1 85407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50667285 50667285 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKD1 85407 broad.mit.edu;ucsc.edu 37 16 50664121 50664121 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKD2 85409 broad.mit.edu;ucsc.edu 37 5 1032288 1032288 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKG7 4818 broad.mit.edu 37 19 51874879 51874879 + 3'UTR SNP G A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKG7 4818 hgsc.bcm.edu 37 19 51875304 51875304 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NKG7 4818 hgsc.bcm.edu 37 19 51875455 51875455 + Silent SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NKIRAS2 28511 hgsc.bcm.edu;ucsc.edu 37 17 40174435 40174435 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NKRF 55922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118723545 118723545 + Missense_Mutation SNP G G T rs140452307 byfrequency;alternate_allele TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKRF 55922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118724240 118724240 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKRF 55922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118724876 118724876 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKTR 4820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42679500 42679500 + Silent SNP T T G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKTR 4820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42680080 42680080 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKTR 4820 hgsc.bcm.edu;ucsc.edu 37 3 42678973 42678974 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKX2-2 4821 broad.mit.edu 37 20 21493005 21493005 + Frame_Shift_Del DEL G - - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKX2-2 4821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21492858 21492858 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKX2-2 4821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21494259 21494259 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NKX2-3 159296 broad.mit.edu 37 10 101294877 101294877 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NKX6-3 157848 broad.mit.edu 37 8 41503854 41503857 + 3'UTR DEL AAAG - - rs140821380 bycluster;by1000genomes TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 AAAG AAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLE1 54475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33464021 33464021 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLE1 54475 hgsc.bcm.edu 37 17 33463419 33463419 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLGN1 22871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 173322838 173322838 + Silent SNP C C T rs140286287 unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLGN1 22871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 173998403 173998403 + Silent SNP T T G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLGN2 57555 broad.mit.edu;hgsc.bcm.edu 37 17 7319145 7319145 + Silent SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLGN4X 57502 hgsc.bcm.edu 37 X 5811180 5811180 + Missense_Mutation SNP C C T rs4017999 unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLK 51701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26449740 26449740 + Silent SNP T T C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLN 57486 broad.mit.edu 37 5 65088386 65088386 + Silent SNP A C C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRC3 197358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3614126 3614126 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRC3 197358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3614127 3614127 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRC3 197358 hgsc.bcm.edu 37 16 3614350 3614350 + Silent SNP C C T novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRC4 58484 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32476580 32476580 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRC4 58484 broad.mit.edu;ucsc.edu 37 2 32481863 32481863 + 5'UTR SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRC5 84166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57060312 57060312 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRC5 84166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57088695 57088695 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRC5 84166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57104485 57104485 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRC5 84166 hgsc.bcm.edu;ucsc.edu 37 16 57065327 57065327 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP10 338322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 7981799 7981799 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NLRP10 338322 hgsc.bcm.edu 37 11 7981300 7981300 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP10 338322 hgsc.bcm.edu 37 11 7981306 7981306 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP11 204801 hgsc.bcm.edu 37 19 56320980 56320980 + Silent SNP G G C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP11 204801 hgsc.bcm.edu 37 19 56321350 56321350 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP1 22861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5462474 5462474 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NLRP1 22861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5463037 5463038 + Frame_Shift_Ins INS - - C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP1 22861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5463038 5463039 + Frame_Shift_Ins INS - - C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP1 22861 hgsc.bcm.edu 37 17 5404270 5404270 + 3'Promoter SNP C C T rs55910638 bycluster;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP1 22861 hgsc.bcm.edu 37 17 5456844 5456844 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP1 22861 hgsc.bcm.edu 37 17 5461895 5461895 + Silent SNP C C A rs61753137 bycluster;byfrequency;by1000genomes TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP1 22861 hgsc.bcm.edu 37 17 5462053 5462053 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP12 91662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54313326 54313326 + Silent SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP12 91662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54313706 54313706 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP12 91662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54313711 54313711 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP12 91662 hgsc.bcm.edu 37 19 54312936 54312936 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP13 126204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56443398 56443398 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP13 126204 hgsc.bcm.edu 37 19 56436315 56436315 + Intron SNP T T A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP14 338323 hgsc.bcm.edu 37 11 7064163 7064163 + Silent SNP C C G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP2 55655 broad.mit.edu 37 19 55512434 55512438 + 3'UTR DEL CTTAT - - rs138333438 bycluster;by1000genomes TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 CTTAT CTTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP2 55655 broad.mit.edu 37 19 55512434 55512438 + 3'UTR DEL CTTAT - - rs138333438 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CTTAT CTTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP2 55655 broad.mit.edu;hgsc.bcm.edu 37 19 55512270 55512270 + 3'UTR SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP2 55655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55489137 55489137 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP2 55655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55489152 55489152 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP2 55655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55497591 55497591 + Silent SNP G G T rs144434448 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP2 55655 broad.mit.edu;ucsc.edu 37 19 55485895 55485895 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP3 114548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247586613 247586613 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP3 114548 hgsc.bcm.edu 37 1 247587937 247587937 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56363605 56363605 + Silent SNP A A G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56369055 56369055 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56369989 56369989 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56370366 56370366 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP5 126206 broad.mit.edu 37 19 56539568 56539568 + Missense_Mutation SNP G A A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP5 126206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56552314 56552314 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP5 126206 broad.mit.edu;ucsc.edu 37 19 56515289 56515289 + Silent SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP5 126206 hgsc.bcm.edu 37 19 56565046 56565046 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NLRP6 171389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 281411 281411 + Silent SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP6 171389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 281628 281628 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP6 171389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 285235 285235 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP7 199713 broad.mit.edu 37 19 55451068 55451068 + Silent SNP C T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP7 199713 broad.mit.edu;hgsc.bcm.edu 37 19 55450880 55450880 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP7 199713 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55450708 55450708 + Silent SNP G G A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP7 199713 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55451743 55451743 + Silent SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP7 199713 hgsc.bcm.edu;ucsc.edu 37 19 55451609 55451609 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP8 126205 broad.mit.edu;hgsc.bcm.edu 37 19 56459316 56459316 + Silent SNP C C T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NLRP8 126205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56473595 56473595 + Silent SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NLRP8 126205 broad.mit.edu;ucsc.edu 37 19 56467043 56467043 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NLRP8 126205 hgsc.bcm.edu;ucsc.edu 37 19 56487556 56487557 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP9 338321 broad.mit.edu;hgsc.bcm.edu 37 19 56244059 56244059 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243438 56243438 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243618 56243618 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243947 56243947 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243988 56243988 + Silent SNP A A T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRX1 79671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119045325 119045325 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NLRX1 79671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119050726 119050726 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMBR 4829 hgsc.bcm.edu 37 6 142409628 142409628 + Silent SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NMBR 4829 hgsc.bcm.edu;ucsc.edu 37 6 142397016 142397016 + Silent SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NMBR 4829 hgsc.bcm.edu;ucsc.edu 37 6 142399949 142399949 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NMD3 51068 broad.mit.edu 37 3 160939777 160939777 + Intron SNP A T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NMD3 51068 hgsc.bcm.edu;ucsc.edu 37 3 160945064 160945064 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NME2P1 283458 broad.mit.edu 37 12 120720247 120720247 + RNA SNP G A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NME2P1 283458 broad.mit.edu 37 12 120720306 120720306 + RNA SNP C T T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NME5 8382 hgsc.bcm.edu 37 5 137454182 137454182 + Intron SNP A A T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NME7 29922 broad.mit.edu 37 1 169101886 169101886 + 3'UTR SNP C T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NME7 29922 broad.mit.edu 37 1 169256356 169256357 + Intron INS - A A rs5778611 bycluster;by1000genomes TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NMI 9111 broad.mit.edu 37 2 152135293 152135293 + Intron SNP G C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NMNAT2 23057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183230359 183230359 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMNAT2 23057 hgsc.bcm.edu;ucsc.edu 37 1 183273881 183273881 + Intron SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NMNAT3 349565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 139279898 139279898 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMNAT3 349565 hgsc.bcm.edu;ucsc.edu 37 3 139279902 139279902 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMRAL1 57407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4511892 4511892 + Silent SNP G G A rs1043380 unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMRAL1 57407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4519369 4519369 + Silent SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMS 129521 hgsc.bcm.edu 37 2 101099772 101099772 + downstream SNP A A T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMT1 4836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43173564 43173564 + Silent SNP A A C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMT2 9397 broad.mit.edu;hgsc.bcm.edu 37 10 15161511 15161511 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMT2 9397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 15151770 15151770 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMT2 9397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 15154856 15154856 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMT2 9397 hgsc.bcm.edu 37 10 15151779 15151779 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMUR1 10316 hgsc.bcm.edu 37 2 232393300 232393300 + Silent SNP G G C novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NMUR2 56923 broad.mit.edu;hgsc.bcm.edu 37 5 151784191 151784191 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMUR2 56923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 151784061 151784061 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NMUR2 56923 hgsc.bcm.edu 37 5 151784357 151784357 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NMUR2 56923 hgsc.bcm.edu;ucsc.edu 37 5 151784054 151784054 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NNMT 4837 broad.mit.edu 37 11 114167217 114167217 + 5'UTR SNP T A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NNMT 4837 broad.mit.edu;hgsc.bcm.edu 37 11 114183068 114183068 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43615986 43615986 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43619222 43619222 + Splice_Site SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43677827 43677827 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43702815 43702815 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NNT 23530 hgsc.bcm.edu 37 5 43675692 43675692 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NNT 23530 hgsc.bcm.edu;ucsc.edu 37 5 43659277 43659277 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOBOX 135935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 144098145 144098145 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOC2L 26155 broad.mit.edu;hgsc.bcm.edu 37 1 888619 888619 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOC3L 64318 hgsc.bcm.edu;ucsc.edu 37 10 96112093 96112093 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOC4L 79050 broad.mit.edu 37 12 132633361 132633361 + Silent SNP G T T novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOC4L 79050 broad.mit.edu;ucsc.edu 37 12 132636049 132636049 + Missense_Mutation SNP T C C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOD1 10392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 30486629 30486629 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOD1 10392 hgsc.bcm.edu 37 7 30494802 30494803 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOD2 64127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50733767 50733767 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOD2 64127 broad.mit.edu;ucsc.edu 37 16 50745117 50745117 + Missense_Mutation SNP C T T rs2076754 bycluster;byfrequency TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOD2 64127 hgsc.bcm.edu;ucsc.edu 37 16 50763736 50763736 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NODAL 4838 broad.mit.edu 37 10 72192384 72192384 + 3'UTR DEL A - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOL10 79954 broad.mit.edu;hgsc.bcm.edu 37 2 10712145 10712145 + 3'UTR SNP A A G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL10 79954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10811743 10811743 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL11 25926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65718733 65718733 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL11 25926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65730487 65730487 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL11 25926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65735643 65735643 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL12 79159 broad.mit.edu;ucsc.edu 37 22 38084989 38084989 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOL4 8715 broad.mit.edu 37 18 31432719 31432719 + 3'UTR SNP A C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOL4 8715 hgsc.bcm.edu;ucsc.edu 37 18 31538245 31538245 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOL6 65083 broad.mit.edu 37 9 33473894 33473894 + 5'UTR SNP C T T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOL6 65083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33464888 33464888 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL6 65083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33467191 33467191 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL6 65083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33469655 33469655 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL6 65083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33470170 33470170 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL6 65083 hgsc.bcm.edu 37 9 33463856 33463856 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOL7 51406 broad.mit.edu;hgsc.bcm.edu 37 6 13621067 13621067 + 3'UTR SNP C C G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL7 51406 broad.mit.edu;ucsc.edu 37 6 13621069 13621069 + 3'UTR DEL A - - novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOL8 55035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95062258 95062258 + Silent SNP G G C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL8 55035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95077535 95077535 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL8 55035 hgsc.bcm.edu;ucsc.edu 37 9 95069939 95069939 + RNA SNP T T C novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL8 55035 hgsc.bcm.edu;ucsc.edu 37 9 95070141 95070141 + RNA SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOL9 79707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6592628 6592628 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOM1 64434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156752728 156752728 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOM1 64434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156752790 156752790 + Silent SNP T T G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOM1 64434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156759742 156759742 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOM1 64434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156761876 156761876 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOM1 64434 hgsc.bcm.edu 37 7 156743209 156743211 + In_Frame_Del DEL GAG GAG - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOMO1 23420 broad.mit.edu 37 16 14989981 14989981 + 3'UTR SNP A C C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOMO2 283820 broad.mit.edu 37 16 18573208 18573208 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOMO2 283820 hgsc.bcm.edu 37 16 18522873 18522873 + Silent SNP C C T rs10085 bycluster TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOMO2 283820 hgsc.bcm.edu 37 16 18525759 18525759 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOMO2 283820 hgsc.bcm.edu 37 16 18528574 18528574 + Silent SNP A A G rs1062415 unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOMO2 283820 hgsc.bcm.edu 37 16 18544484 18544484 + Missense_Mutation SNP C C T rs453341 bycluster;by2hit2allele;byhapmap TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOMO3 408050 hgsc.bcm.edu 37 16 16374089 16374089 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NONE(dist=NONE) 0 hgsc.bcm.edu 37 20 29457621 29457621 + IGR SNP A A G rs188800340 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NONE(dist=NONE) 0 hgsc.bcm.edu;ucsc.edu 37 12 38327960 38327960 + IGR SNP C C A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NONO 4841 broad.mit.edu;hgsc.bcm.edu 37 X 70511743 70511743 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NONO 4841 broad.mit.edu;hgsc.bcm.edu 37 X 70516749 70516749 + Nonsense_Mutation SNP T T G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP14 8602 broad.mit.edu 37 4 2952002 2952002 + Intron SNP A C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOP14 8602 broad.mit.edu 37 4 2952002 2952002 + Intron SNP A C C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOP14 8602 broad.mit.edu 37 4 2952002 2952002 + Intron SNP A C C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOP14 8602 broad.mit.edu 37 4 2952604 2952605 + Intron DEL AG - - rs10576953 unknown;alternate_allele TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOP14 8602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2948137 2948137 + Splice_Site SNP A A G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP14 8602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2955338 2955338 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP2 4839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6669891 6669891 + Silent SNP G G T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP2 4839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6672820 6672820 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP56 10528 broad.mit.edu;hgsc.bcm.edu 37 20 2637491 2637491 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP56 10528 hgsc.bcm.edu 37 20 2637724 2637724 + RNA SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOP58 51602 broad.mit.edu 37 2 203157832 203157832 + Intron SNP T C C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117672374 117672374 + Silent SNP A A T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117672492 117672492 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117681127 117681127 + Silent SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117703219 117703219 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117710301 117710301 + Silent SNP G G C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117723925 117723925 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117728169 117728169 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117768660 117768660 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1 4842 broad.mit.edu;ucsc.edu 37 12 117665305 117665305 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS1 4842 hgsc.bcm.edu 37 12 117662919 117662919 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOS1 4842 hgsc.bcm.edu;ucsc.edu 37 12 117710228 117710228 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOS1AP 9722 broad.mit.edu 37 1 162040040 162040040 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS1AP 9722 broad.mit.edu 37 1 162338874 162338875 + 3'UTR DEL TG - - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS1AP 9722 broad.mit.edu 37 1 162339261 162339262 + 3'UTR INS - A A rs61332953 bycluster;alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS1AP 9722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 162324977 162324977 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS1AP 9722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 162324998 162324999 + Frame_Shift_Ins INS - - GG novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS2 4843 broad.mit.edu 37 17 26087758 26087758 + Silent SNP G A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS2 4843 broad.mit.edu 37 17 26091141 26091141 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOS2 4843 broad.mit.edu;hgsc.bcm.edu 37 17 26086097 26086097 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS3 4846 broad.mit.edu 37 7 150693876 150693876 + Silent SNP C A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx NOS3 4846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150693640 150693640 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOS3 4846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150697631 150697631 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOS3 4846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150698930 150698930 + Silent SNP G G A rs61734203 bycluster;byfrequency TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOS3 4846 hgsc.bcm.edu 37 7 150699340 150699340 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOSIP 51070 broad.mit.edu;hgsc.bcm.edu 37 19 50060397 50060397 + Missense_Mutation SNP C C G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOSTRIN 115677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 169707624 169707624 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH1 4851 broad.mit.edu 37 9 139396756 139396756 + Silent SNP C A A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx NOTCH1 4851 broad.mit.edu 37 9 139400096 139400096 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139410507 139410507 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOTCH1 4851 hgsc.bcm.edu 37 9 139391324 139391324 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH1 4851 hgsc.bcm.edu 37 9 139399349 139399349 + Silent SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH1 4851 hgsc.bcm.edu 37 9 139401233 139401233 + Missense_Mutation SNP C C T rs61751543 bycluster;byfrequency;by1000genomes TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH1 4851 hgsc.bcm.edu 37 9 139409100 139409100 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH2 4853 broad.mit.edu 37 1 120612003 120612004 + Frame_Shift_Del DEL GG - - novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu 37 1 120612034 120612034 + 5'UTR SNP T G G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu 37 1 120612034 120612034 + 5'UTR SNP T G G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu 37 1 120612034 120612034 + 5'UTR SNP T G G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu 37 1 120612040 120612041 + 5'UTR INS - CCTCCGCCG CCTCCGCCG novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu 37 1 120612224 120612226 + 5'UTR DEL GCC - - rs72341181 unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu 37 1 120612224 120612226 + 5'UTR DEL GCC - - rs72341181 unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu 37 1 120464896 120464896 + Silent SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120458045 120458045 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120462002 120462002 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120468210 120468210 + Silent SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120497758 120497758 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NOTCH2 4853 hgsc.bcm.edu 37 1 120548025 120548025 + Silent SNP G G A rs2604045 bycluster TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH2 4853 hgsc.bcm.edu 37 1 120572547 120572547 + Missense_Mutation SNP T T C rs61788900 bycluster TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH2 4853 hgsc.bcm.edu 37 1 120612006 120612006 + Silent SNP G G A rs77243975 bycluster;byfrequency TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH2 4853 hgsc.bcm.edu;ucsc.edu 37 1 120458462 120458463 + Frame_Shift_Ins INS - - TATA novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH2 4853 hgsc.bcm.edu;ucsc.edu 37 1 120478185 120478185 + Missense_Mutation SNP C C G rs185917176 by1000genomes;alternate_allele TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID NOTCH2 4853 hgsc.bcm.edu;ucsc.edu 37 1 120480035 120480035 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH2 4853 hgsc.bcm.edu;ucsc.edu 37 1 120491750 120491750 + Splice_Site SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH2 4853 hgsc.bcm.edu;ucsc.edu 37 1 120539837 120539837 + Silent SNP T T C rs1616532 bycluster;byfrequency TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH2 4853 hgsc.bcm.edu;ucsc.edu 37 1 120539936 120539936 + Silent SNP C C G rs1615676 bycluster TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH3 4854 broad.mit.edu;hgsc.bcm.edu 37 19 15290202 15290202 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH3 4854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15276831 15276831 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH3 4854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15298087 15298087 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH3 4854 hgsc.bcm.edu 37 19 15289963 15289963 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH3 4854 hgsc.bcm.edu 37 19 15298776 15298776 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH3 4854 hgsc.bcm.edu 37 19 15300136 15300136 + Silent SNP A A G rs61749020 bycluster;byfrequency;by1000genomes TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH3 4854 hgsc.bcm.edu;ucsc.edu 37 19 15278141 15278141 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOTCH4 4855 broad.mit.edu;hgsc.bcm.edu 37 6 32170158 32170158 + Silent SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH4 4855 hgsc.bcm.edu 37 6 32187443 32187443 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOTCH4 4855 hgsc.bcm.edu 37 6 32188642 32188642 + Silent SNP T T C rs520688 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOV 4856 broad.mit.edu;ucsc.edu 37 8 120435157 120435157 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOVA1 4857 broad.mit.edu 37 14 27066695 27066695 + 5'UTR DEL C - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOVA1 4857 broad.mit.edu 37 14 27066701 27066701 + 5'UTR SNP C T T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOVA1 4857 broad.mit.edu 37 14 27066713 27066713 + 5'UTR DEL C - - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOVA1 4857 broad.mit.edu 37 14 27066713 27066714 + 5'UTR INS - T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOVA2 4858 hgsc.bcm.edu 37 19 46443739 46443739 + Silent SNP T T G rs28742045 bycluster;byfrequency;by1000genomes TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX1 27035 broad.mit.edu 37 X 100098824 100098824 + 3'UTR SNP T G G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOX1 27035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100117451 100117451 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX1 27035 broad.mit.edu;ucsc.edu 37 X 100105317 100105317 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOX3 50508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155743887 155743887 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX3 50508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155776182 155776182 + Nonsense_Mutation SNP G G A rs143358981 byfrequency TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX4 50507 broad.mit.edu;hgsc.bcm.edu 37 11 89135577 89135577 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX4 50507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 89075257 89075257 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX4 50507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 89223701 89223701 + Silent SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOX4 50507 hgsc.bcm.edu 37 11 89059930 89059930 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOX4 50507 hgsc.bcm.edu 37 11 89088168 89088168 + Silent SNP G G A rs75735530 bycluster;byfrequency;by1000genomes TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NOX5 79400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 69328249 69328249 + Silent SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOXA1 10811 broad.mit.edu 37 9 140323753 140323754 + Frame_Shift_Ins INS - G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NOXA1 10811 hgsc.bcm.edu 37 9 140317979 140317979 + 5'UTR SNP G G T rs117554356 byfrequency;by1000genomes TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOXA1 10811 hgsc.bcm.edu;ucsc.edu 37 9 140320783 140320783 + Splice_Site SNP G G A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOXO1 124056 hgsc.bcm.edu 37 16 2031172 2031173 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NOXO1 124056 hgsc.bcm.edu 37 16 2031172 2031173 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPAS1 4861 broad.mit.edu 37 19 47539293 47539293 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPAS1 4861 broad.mit.edu;ucsc.edu 37 19 47539306 47539306 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPAS4 266743 broad.mit.edu 37 11 66192144 66192144 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPAS4 266743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66189623 66189623 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPAS4 266743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66191067 66191067 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPAS4 266743 hgsc.bcm.edu 37 11 66189604 66189604 + Silent SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPAT 4863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108040715 108040715 + Silent SNP C C G novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPAT 4863 hgsc.bcm.edu;ucsc.edu 37 11 108056204 108056205 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPBWR1 2831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 53853305 53853305 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPBWR2 2832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62737383 62737383 + Missense_Mutation SNP C C T rs140478149 unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPC1 4864 broad.mit.edu;hgsc.bcm.edu 37 18 21119752 21119752 + Intron SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPC1 4864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21140211 21140211 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPC1 4864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21141441 21141441 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPC1 4864 broad.mit.edu;ucsc.edu 37 18 21141440 21141440 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPC1L1 29881 broad.mit.edu;ucsc.edu 37 7 44561397 44561397 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPC1L1 29881 hgsc.bcm.edu 37 7 44579311 44579311 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPC1L1 29881 hgsc.bcm.edu 37 7 44579792 44579792 + Silent SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPEPPS 9520 broad.mit.edu 37 17 45699310 45699310 + 3'UTR SNP G C C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPEPPS 9520 hgsc.bcm.edu 37 17 45669359 45669359 + Missense_Mutation SNP T T G rs76398682 bycluster TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPEPPS 9520 hgsc.bcm.edu 37 17 45669359 45669359 + Missense_Mutation SNP T T G rs76398682 bycluster TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPEPPS 9520 hgsc.bcm.edu;ucsc.edu 37 17 45656826 45656826 + Silent SNP A A G rs2661174 bycluster;by2hit2allele TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPFF 8620 broad.mit.edu;hgsc.bcm.edu 37 12 53900526 53900526 + 3'UTR SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPFFR2 10886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73013282 73013282 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPFFR2 10886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73013490 73013490 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP1 4867 broad.mit.edu;hgsc.bcm.edu 37 2 110926096 110926096 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP1 4867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 110919218 110919218 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP1 4867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 110922222 110922222 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP1 4867 hgsc.bcm.edu;ucsc.edu 37 2 110922107 110922107 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP3 27031 broad.mit.edu;hgsc.bcm.edu 37 3 132416207 132416207 + Splice_Site SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP3 27031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132409424 132409424 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP3 27031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132418875 132418875 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP3 27031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132419270 132419270 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP3 27031 hgsc.bcm.edu;ucsc.edu 37 3 132433973 132433973 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPHP4 261734 broad.mit.edu 37 1 5923707 5923707 + Intron DEL A - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPHP4 261734 broad.mit.edu 37 1 5925110 5925110 + Intron SNP C A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPHP4 261734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 5934954 5934954 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHP4 261734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 5934998 5934998 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHS1 4868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36340202 36340202 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHS1 4868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36340513 36340513 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHS1 4868 hgsc.bcm.edu 37 19 36330419 36330420 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPHS2 7827 broad.mit.edu 37 1 179520273 179520274 + 3'UTR INS - G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPHS2 7827 broad.mit.edu 37 1 179520276 179520276 + 3'UTR SNP C G G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPHS2 7827 hgsc.bcm.edu 37 1 179521759 179521759 + Silent SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPL 80896 hgsc.bcm.edu;ucsc.edu 37 1 182794926 182794926 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPLOC4 55666 broad.mit.edu;ucsc.edu 37 17 79589205 79589205 + Missense_Mutation SNP A T T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPM3 10360 hgsc.bcm.edu;ucsc.edu 37 10 103542318 103542319 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106819134 106819134 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106848531 106848531 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106848542 106848542 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106848559 106848561 + In_Frame_Del DEL GTT GTT - novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 GTT GTT GTT - GTT GTT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106863727 106863727 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NPNT 255743 broad.mit.edu;ucsc.edu 37 4 106861265 106861265 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx NPPA 4878 broad.mit.edu;ucsc.edu 37 1 11907351 11907351 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPPB 4879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11918438 11918438 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPPB 4879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11918768 11918768 + Silent SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPR1 4881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153659728 153659728 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPR1 4881 hgsc.bcm.edu 37 1 153660245 153660246 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPR1 4881 hgsc.bcm.edu;ucsc.edu 37 1 153658648 153658648 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPR1 4881 hgsc.bcm.edu;ucsc.edu 37 1 153659771 153659771 + Silent SNP C C A rs139564474 unknown;alternate_allele TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPR2 4882 broad.mit.edu 37 9 35792438 35792438 + Silent SNP A G G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPR2 4882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35808676 35808678 + In_Frame_Del DEL TAC TAC - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 TAC TAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPR2 4882 hgsc.bcm.edu 37 9 35794073 35794073 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPR2 4882 hgsc.bcm.edu;ucsc.edu 37 9 35801559 35801559 + Intron SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPR3 4883 broad.mit.edu 37 5 32786466 32786466 + 3'UTR DEL T - - novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPRL2 10641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50386816 50386816 + Splice_Site SNP C C G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPRL2 10641 hgsc.bcm.edu 37 3 50387111 50387111 + Silent SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPRL2 10641 hgsc.bcm.edu 37 3 50387111 50387111 + Silent SNP A A G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPSR1 387129 broad.mit.edu 37 7 34889021 34889021 + Intron SNP C T T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPTX1 4884 broad.mit.edu 37 17 78444520 78444520 + 3'UTR SNP C A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPTX1 4884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78445540 78445540 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPTX2 4885 broad.mit.edu 37 7 98258104 98258105 + 3'UTR INS - T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPTX2 4885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98256632 98256632 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NPTXR 23467 broad.mit.edu 37 22 39214543 39214544 + 3'UTR DEL AC - - rs138892990 by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPW 283869 broad.mit.edu 37 16 2070178 2070178 + Silent SNP C A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPW 283869 hgsc.bcm.edu 37 16 2069121 2069121 + 5'Promoter SNP C C T rs8052805 bycluster;byfrequency;by1000genomes TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPY1R 4886 hgsc.bcm.edu 37 4 164247020 164247020 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NPY 4852 broad.mit.edu 37 7 24331365 24331365 + 3'UTR SNP A T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPY 4852 broad.mit.edu;ucsc.edu 37 7 24324865 24324865 + Silent SNP A G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NPY 4852 hgsc.bcm.edu;ucsc.edu 37 7 24329150 24329150 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NQO1 1728 broad.mit.edu 37 16 69744708 69744708 + 3'UTR SNP T A A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NQO1 1728 broad.mit.edu 37 16 69744750 69744750 + 3'UTR SNP C T T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NQO1 1728 hgsc.bcm.edu;ucsc.edu 37 16 69760302 69760302 + Intron SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NQO2 4835 broad.mit.edu;ucsc.edu 37 6 3006757 3006757 + 5'UTR SNP T A A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR1D2 9975 hgsc.bcm.edu;ucsc.edu 37 3 24018838 24018838 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1H3 10062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47283271 47283271 + Silent SNP G G C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1H3 10062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47289515 47289515 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1H3 10062 hgsc.bcm.edu 37 11 47282968 47282968 + Silent SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR1H3 10062 hgsc.bcm.edu;ucsc.edu 37 11 47280816 47280816 + Intron SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1H3 10062 hgsc.bcm.edu;ucsc.edu 37 11 47280817 47280817 + Intron SNP T T C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1H4 9971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100930297 100930297 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1I2 8856 broad.mit.edu 37 3 119528962 119528962 + Nonsense_Mutation SNP C A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR1I2 8856 broad.mit.edu;hgsc.bcm.edu 37 3 119528965 119528965 + Silent SNP G G A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR1I3 9970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161200669 161200669 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR2C1 7181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95422176 95422176 + Silent SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR2C1 7181 hgsc.bcm.edu 37 12 95445691 95445691 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2C1 7181 hgsc.bcm.edu 37 12 95445694 95445694 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2C1 7181 hgsc.bcm.edu 37 12 95445694 95445694 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2C1 7181 hgsc.bcm.edu;ucsc.edu 37 12 95452258 95452258 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2C2 7182 hgsc.bcm.edu;ucsc.edu 37 3 15076190 15076190 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2C2AP 126382 broad.mit.edu 37 19 19313097 19313097 + Intron SNP C A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR2C2AP 126382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19313200 19313200 + Silent SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR2E1 7101 hgsc.bcm.edu;ucsc.edu 37 6 108502843 108502843 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2F2 7026 hgsc.bcm.edu;ucsc.edu 37 15 96880591 96880591 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR2F6 2063 broad.mit.edu;hgsc.bcm.edu 37 19 17346354 17346354 + Silent SNP G G A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR3C1 2908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 142779613 142779613 + Silent SNP A A C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR3C2 4306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 149356735 149356735 + Silent SNP T T G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR4A1 3164 broad.mit.edu 37 12 52449188 52449189 + Intron INS - AG AG rs59885058 bycluster;by1000genomes TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR4A1 3164 broad.mit.edu 37 12 52452615 52452615 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR4A1 3164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52448382 52448382 + Silent SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR4A2 4929 hgsc.bcm.edu 37 2 157185033 157185033 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR4A3 8013 broad.mit.edu 37 9 102591255 102591255 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR4A3 8013 broad.mit.edu 37 9 102626233 102626233 + 3'UTR SNP T G G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR4A3 8013 broad.mit.edu 37 9 102626286 102626286 + 3'UTR DEL C - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR4A3 8013 broad.mit.edu 37 9 102626287 102626287 + 3'UTR DEL T - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NR4A3 8013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 102590586 102590586 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR5A2 2494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200014591 200014591 + Silent SNP C C A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR5A2 2494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200014711 200014711 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NR5A2 2494 hgsc.bcm.edu;ucsc.edu 37 1 200014705 200014705 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NR6A1 2649 hgsc.bcm.edu;ucsc.edu 37 9 127298262 127298262 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRAP 4892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115356916 115356916 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRAP 4892 hgsc.bcm.edu;ucsc.edu 37 10 115389356 115389356 + Silent SNP G G C rs2286736 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes;alternate_allele TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRBF2 29982 hgsc.bcm.edu 37 10 64913306 64913306 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRBP1 29959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27656879 27656879 + Silent SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRBP1 29959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27663740 27663740 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRBP1 29959 broad.mit.edu;ucsc.edu 37 2 27663340 27663340 + Silent SNP C A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRBP1 29959 hgsc.bcm.edu;ucsc.edu 37 2 27663325 27663325 + Silent SNP C C T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRBP2 340371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144920929 144920929 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRCAM 4897 broad.mit.edu 37 7 107801010 107801011 + Intron DEL AA - - novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRCAM 4897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107820706 107820706 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRCAM 4897 hgsc.bcm.edu 37 7 107848033 107848033 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRCAM 4897 hgsc.bcm.edu 37 7 107872767 107872767 + Intron SNP T T A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRCAM 4897 hgsc.bcm.edu;ucsc.edu 37 7 107834765 107834766 + Frame_Shift_Ins INS - - TA novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRD1 4898 broad.mit.edu;ucsc.edu 37 1 52287168 52287169 + Splice_Site INS - C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRD1 4898 hgsc.bcm.edu 37 1 52306082 52306082 + Missense_Mutation SNP A A T rs62639317 unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRD1 4898 hgsc.bcm.edu;ucsc.edu 37 1 52257262 52257262 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRF1 4899 broad.mit.edu 37 7 129395139 129395140 + 3'UTR DEL TT - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRF1 4899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129297261 129297261 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG1 3084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 32505280 32505280 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG1 3084 hgsc.bcm.edu 37 8 32621790 32621790 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRG1 3084 hgsc.bcm.edu;ucsc.edu 37 8 32505779 32505779 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRG1 3084 hgsc.bcm.edu;ucsc.edu 37 8 32600253 32600253 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRG2 9542 broad.mit.edu 37 5 139422020 139422020 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRG2 9542 broad.mit.edu;hgsc.bcm.edu 37 5 139244754 139244754 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG2 9542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139232130 139232130 + Silent SNP G G A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG2 9542 hgsc.bcm.edu;ucsc.edu 37 5 139231591 139231591 + Intron SNP G G T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG2 9542 hgsc.bcm.edu;ucsc.edu 37 5 139402344 139402344 + Intron SNP G G C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG3 10718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 84744979 84744979 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRG3 10718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 84745303 84745303 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRIP1 8204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 16338035 16338035 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NRIP1 8204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 16338673 16338673 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NRIP1 8204 hgsc.bcm.edu 37 21 16338707 16338707 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRIP1 8204 hgsc.bcm.edu 37 21 16338779 16338779 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq NRIP1 8204 hgsc.bcm.edu;ucsc.edu 37 21 16337701 16337701 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM SOLID NRIP1 8204 hgsc.bcm.edu;ucsc.edu 37 21 16338266 16338266 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T T G T T Unknown Valid Somatic Phase_I Capture PGM SOLID NRK 203447 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 105132300 105132300 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NRK 203447 hgsc.bcm.edu;ucsc.edu 37 X 105132390 105132390 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRK 203447 hgsc.bcm.edu;ucsc.edu 37 X 105197102 105197102 + Silent SNP G G A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRN1 51299 broad.mit.edu 37 6 5999153 5999153 + 3'UTR DEL T - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRN1 51299 hgsc.bcm.edu 37 6 6002641 6002641 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRP1 8829 broad.mit.edu 37 10 33538452 33538452 + Intron SNP G C C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRP1 8829 broad.mit.edu;hgsc.bcm.edu 37 10 33619643 33619643 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRP2 8828 broad.mit.edu 37 2 206641240 206641243 + Intron DEL CGCA - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 CGCA CGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRP2 8828 broad.mit.edu 37 2 206641245 206641246 + Intron INS - A A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRP2 8828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 206580920 206580920 + Silent SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRP2 8828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 206640998 206640998 + Silent SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRSN1 140767 hgsc.bcm.edu;ucsc.edu 37 6 24145877 24145877 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN1 9378 broad.mit.edu 37 2 50724852 50724852 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRXN1 9378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 50149352 50149352 + Silent SNP T T A rs55923848 bycluster;byfrequency;alternate_allele TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN1 9378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 50723141 50723141 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN1 9378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 50724674 50724674 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN1 9378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 50733648 50733648 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN1 9378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 50779973 50779973 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN2 9379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64434814 64434814 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN2 9379 broad.mit.edu;ucsc.edu 37 11 64427892 64427892 + Silent SNP T G G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRXN2 9379 broad.mit.edu;ucsc.edu 37 11 64453329 64453329 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRXN2 9379 hgsc.bcm.edu 37 11 64390412 64390412 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRXN2 9379 hgsc.bcm.edu;ucsc.edu 37 11 64417942 64417942 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRXN2 9379 hgsc.bcm.edu;ucsc.edu 37 11 64428577 64428577 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN3 9369 broad.mit.edu 37 14 80328463 80328464 + 3'UTR DEL AC - - rs138708831 by1000genomes TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NRXN3 9369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 79434650 79434650 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NRXN3 9369 hgsc.bcm.edu 37 14 80130119 80130119 + Splice_Site SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NRXN3 9369 hgsc.bcm.edu;ucsc.edu 37 14 79432483 79432483 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NSA2 10412 broad.mit.edu;hgsc.bcm.edu 37 5 74069762 74069762 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSA2 10412 broad.mit.edu 37 5 74072544 74072544 + 3'UTR SNP A C C novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSD1 64324 broad.mit.edu 37 5 176722543 176722543 + 3'UTR DEL A - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSD1 64324 broad.mit.edu;hgsc.bcm.edu 37 5 176665505 176665505 + Missense_Mutation SNP C C G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176562309 176562309 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176562399 176562399 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176631295 176631295 + Splice_Site SNP T T C novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176637818 176637818 + Silent SNP A A C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176720945 176720945 + Silent SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSD1 64324 broad.mit.edu;ucsc.edu 37 5 176636690 176636690 + Silent SNP G A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSFL1C 55968 broad.mit.edu 37 20 1424303 1424303 + 3'UTR SNP G A A rs6891 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSL1 25936 broad.mit.edu 37 1 212905370 212905371 + 3'UTR INS - T T rs11392084 unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSMAF 8439 broad.mit.edu;hgsc.bcm.edu 37 8 59514096 59514096 + Splice_Site SNP T T C rs112233809 unknown;alternate_allele TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSMAF 8439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 59506790 59506790 + Splice_Site SNP C C G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSMAF 8439 hgsc.bcm.edu;ucsc.edu 37 8 59515834 59515834 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NSMCE2 286053 hgsc.bcm.edu 37 8 126114663 126114664 + Frame_Shift_Ins INS - - A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSMCE2 286053 hgsc.bcm.edu 37 8 126114663 126114664 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSMCE4A 54780 hgsc.bcm.edu;ucsc.edu 37 10 123730567 123730569 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSUN2 54888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 6600260 6600260 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSUN2 54888 hgsc.bcm.edu;ucsc.edu 37 5 6620322 6620322 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSUN3 63899 broad.mit.edu 37 3 93845542 93845542 + 3'UTR DEL G - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSUN4 387338 broad.mit.edu 37 1 46809445 46809446 + Intron DEL AG - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSUN4 387338 hgsc.bcm.edu 37 1 46806550 46806550 + Missense_Mutation SNP C C T rs41293277 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NSUN4 387338 hgsc.bcm.edu;ucsc.edu 37 1 46827433 46827433 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NSUN5 55695 broad.mit.edu 37 7 72717575 72717575 + 3'UTR SNP A T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSUN5P2 260294 hgsc.bcm.edu;ucsc.edu 37 7 72419464 72419464 + RNA SNP T T G rs71256641 unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NSUN6 221078 broad.mit.edu 37 10 18834658 18834658 + 3'UTR DEL T - - rs145416942 bycluster;by1000genomes TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSUN6 221078 broad.mit.edu 37 10 18834658 18834658 + 3'UTR DEL T - - rs145416942 bycluster;by1000genomes TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NSUN6 221078 hgsc.bcm.edu 37 10 18837163 18837163 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NSUN6 221078 hgsc.bcm.edu;ucsc.edu 37 10 18874976 18874977 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5C1B 93034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 18757590 18757590 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5C1B 93034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 18765441 18765441 + Silent SNP C C T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5C2 22978 hgsc.bcm.edu;ucsc.edu 37 10 104934672 104934673 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5C3 51251 broad.mit.edu;hgsc.bcm.edu 37 7 33054375 33054375 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5C3 51251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 33055308 33055308 + Silent SNP G G A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5DC1 221294 broad.mit.edu 37 6 116431962 116431962 + Intron SNP G T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NT5DC3 51559 broad.mit.edu;hgsc.bcm.edu 37 12 104182685 104182685 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5DC3 51559 broad.mit.edu;hgsc.bcm.edu 37 12 104208888 104208888 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5DC3 51559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104171814 104171814 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5DC3 51559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104179176 104179176 + Silent SNP C C A rs61752308 unknown;alternate_allele TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5DC3 51559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104186991 104186991 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NT5M 56953 broad.mit.edu 37 17 17250185 17250185 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NT5M 56953 hgsc.bcm.edu;ucsc.edu 37 17 17248196 17248196 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTF3 4908 broad.mit.edu 37 12 5541411 5541411 + 5'UTR SNP T G G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTF4 4909 broad.mit.edu 37 19 49564500 49564500 + 3'UTR DEL A - - novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTF4 4909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49564851 49564851 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTM 50863 broad.mit.edu 37 11 131781272 131781272 + 5'UTR SNP G T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTN4 59277 broad.mit.edu 37 12 96052753 96052753 + 3'UTR SNP A G G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTN4 59277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96181160 96181161 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTN4 59277 hgsc.bcm.edu;ucsc.edu 37 12 96107078 96107078 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTN5 126147 broad.mit.edu;hgsc.bcm.edu 37 19 49173943 49173943 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTN5 126147 hgsc.bcm.edu 37 19 49167834 49167834 + Splice_Site SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NTN5 126147 hgsc.bcm.edu;ucsc.edu 37 19 49166772 49166772 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NTNG1 22854 hgsc.bcm.edu 37 1 107867021 107867021 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NTNG2 84628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135102354 135102354 + Silent SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTRK1 4914 broad.mit.edu 37 1 156843581 156843581 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTRK1 4914 hgsc.bcm.edu 37 1 156843698 156843698 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NTRK1 4914 hgsc.bcm.edu;ucsc.edu 37 1 156845351 156845351 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTRK1 4914 hgsc.bcm.edu;ucsc.edu 37 1 156845424 156845424 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NTRK2 4915 broad.mit.edu 37 9 87285540 87285540 + 5'UTR SNP G A A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTRK2 4915 broad.mit.edu 37 9 87487846 87487846 + Intron DEL A - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTRK2 4915 hgsc.bcm.edu;ucsc.edu 37 9 87635222 87635222 + Silent SNP G G T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NTRK3 4916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 88423631 88423631 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NTRK3 4916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 88476307 88476307 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NTRK3 4916 hgsc.bcm.edu;ucsc.edu 37 15 88476290 88476290 + Silent SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NTS 4922 broad.mit.edu 37 12 86276190 86276190 + 3'UTR SNP A T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NTSR1 4923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61341142 61341142 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUAK1 9891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 106466600 106466600 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUAK1 9891 hgsc.bcm.edu 37 12 106461281 106461281 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUAK2 81788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205272654 205272654 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUAK2 81788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205275383 205275383 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUAK2 81788 broad.mit.edu;ucsc.edu 37 1 205290624 205290624 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUAK2 81788 hgsc.bcm.edu;ucsc.edu 37 1 205280933 205280933 + Silent SNP C C A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUB1 51667 broad.mit.edu 37 7 151057396 151057396 + Intron SNP A C C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUB1 51667 hgsc.bcm.edu;ucsc.edu 37 7 151042440 151042440 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUCB1 4924 broad.mit.edu;hgsc.bcm.edu 37 19 49404186 49404186 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUCB1 4924 hgsc.bcm.edu;ucsc.edu 37 19 49425593 49425593 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUCB2 4925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17351711 17351711 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUCKS1 64710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205696856 205696856 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDCD1 84955 hgsc.bcm.edu 37 8 110255494 110255494 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUDCD1 84955 hgsc.bcm.edu;ucsc.edu 37 8 110346160 110346161 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDCD2 134492 hgsc.bcm.edu;ucsc.edu 37 5 162881024 162881024 + Silent SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUDT10 170685 broad.mit.edu;hgsc.bcm.edu 37 X 51075924 51075924 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT11 55190 broad.mit.edu 37 X 51239296 51239309 + Translation_Start_Site DEL TCCTCGAGGCAGCC - - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 TCCTCGAGGCAGCC TCCTCGAGGCAGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT11 55190 broad.mit.edu 37 X 51239296 51239309 + Translation_Start_Site DEL TCCTCGAGGCAGCC - - novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 TCCTCGAGGCAGCC TCCTCGAGGCAGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT11 55190 broad.mit.edu 37 X 51239296 51239309 + Translation_Start_Site DEL TCCTCGAGGCAGCC - - novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 TCCTCGAGGCAGCC TCCTCGAGGCAGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT12 83594 broad.mit.edu 37 5 102886534 102886534 + 3'UTR SNP A C C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT12 83594 broad.mit.edu;hgsc.bcm.edu 37 5 102891795 102891795 + Silent SNP A A C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT12 83594 hgsc.bcm.edu;ucsc.edu 37 5 102894735 102894736 + In_Frame_Ins INS - - CAG novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT15 55270 broad.mit.edu 37 13 48615262 48615262 + Intron SNP T G G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT15 55270 broad.mit.edu 37 13 48620101 48620101 + 3'UTR SNP T C C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT15 55270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 48619890 48619890 + Silent SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT17 200035 broad.mit.edu;hgsc.bcm.edu 37 1 145588663 145588663 + Intron SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT19 390916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33183154 33183154 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT21 11051 hgsc.bcm.edu 37 16 56485075 56485076 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT21 11051 hgsc.bcm.edu 37 16 56485075 56485076 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT4 11163 broad.mit.edu;hgsc.bcm.edu 37 12 93793101 93793101 + Silent SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT4P1 440672 hgsc.bcm.edu;ucsc.edu 37 12 93789240 93789240 + RNA SNP T T A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT6 11162 broad.mit.edu 37 4 123843511 123843511 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT7 283927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77775769 77775769 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUDT7 283927 broad.mit.edu;ucsc.edu 37 16 77775489 77775489 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT9 53343 broad.mit.edu 37 4 88343913 88343925 + 5'UTR DEL GCTACTCCCGTTC - - rs113013798 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 GCTACTCCCGTTC GCTACTCCCGTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUDT9 53343 hgsc.bcm.edu;ucsc.edu 37 4 88359433 88359433 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUF2 83540 hgsc.bcm.edu 37 1 163309266 163309266 + Missense_Mutation SNP C C T rs144627000 unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUF2 83540 hgsc.bcm.edu;ucsc.edu 37 1 163297295 163297295 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUFIP2 57532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27613674 27613674 + Silent SNP G G T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUMA1 4926 broad.mit.edu 37 11 71728543 71728544 + Intron INS - A A rs34393610 bycluster;by1000genomes TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUMA1 4926 broad.mit.edu 37 11 71728699 71728699 + Intron SNP C A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUMA1 4926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71735322 71735322 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUMA1 4926 hgsc.bcm.edu 37 11 71746964 71746965 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUMB 8650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73746101 73746101 + Silent SNP A A G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUMB 8650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73759584 73759584 + Splice_Site SNP T T C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUMB 8650 hgsc.bcm.edu 37 14 73832318 73832318 + Intron SNP G G A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUMB 8650 hgsc.bcm.edu;ucsc.edu 37 14 73822411 73822411 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUMBL 9253 broad.mit.edu 37 19 41173395 41173395 + Frame_Shift_Del DEL T - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP107 57122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 69136217 69136217 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP133 55746 broad.mit.edu;hgsc.bcm.edu 37 1 229602504 229602504 + Splice_Site SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NUP133 55746 broad.mit.edu;hgsc.bcm.edu 37 1 229643913 229643913 + Silent SNP C C G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP133 55746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229641823 229641823 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NUP153 9972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17624932 17624932 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP153 9972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17662260 17662260 + Silent SNP T T C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP153 9972 hgsc.bcm.edu 37 6 17637570 17637570 + Silent SNP A A G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP160 23279 broad.mit.edu 37 11 47800579 47800579 + 3'UTR SNP T G G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP160 23279 broad.mit.edu;hgsc.bcm.edu 37 11 47828687 47828687 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP160 23279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47827752 47827752 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP160 23279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47828640 47828640 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP160 23279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47833875 47833875 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP160 23279 hgsc.bcm.edu;ucsc.edu 37 11 47857324 47857324 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP160 23279 hgsc.bcm.edu;ucsc.edu 37 11 47861527 47861527 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP205 23165 broad.mit.edu 37 7 135333377 135333377 + 3'UTR SNP T G G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP205 23165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135261060 135261060 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP205 23165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135277919 135277919 + Silent SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP205 23165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135298932 135298932 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP205 23165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135307659 135307659 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP205 23165 hgsc.bcm.edu;ucsc.edu 37 7 135292022 135292022 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP210 23225 broad.mit.edu 37 3 13358970 13358970 + 3'UTR DEL A - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP210 23225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 13429823 13429823 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NUP210 23225 hgsc.bcm.edu;ucsc.edu 37 3 13415333 13415333 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154027277 154027277 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154027278 154027278 + Nonsense_Mutation SNP T T A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154029322 154029322 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154042867 154042867 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154112289 154112289 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP210L 91181 broad.mit.edu;ucsc.edu 37 1 154031095 154031095 + Silent SNP T A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP210L 91181 hgsc.bcm.edu;ucsc.edu 37 1 154026805 154026807 + In_Frame_Del DEL TAT TAT - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 TAT TAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP214 8021 broad.mit.edu;hgsc.bcm.edu 37 9 134077067 134077067 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NUP214 8021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134072982 134072982 + Silent SNP C C G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NUP214 8021 hgsc.bcm.edu;ucsc.edu 37 9 134067639 134067640 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP35 129401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 184016285 184016285 + Silent SNP A A C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP37 79023 hgsc.bcm.edu;ucsc.edu 37 12 102471203 102471203 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP37 79023 hgsc.bcm.edu;ucsc.edu 37 12 102506003 102506011 + In_Frame_Del DEL TCTTCTTCC TCTTCTTCC - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 TCTTCTTCC TCTTCTTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP43 348995 broad.mit.edu 37 6 150047983 150047983 + 3'UTR SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP50 10762 broad.mit.edu;hgsc.bcm.edu 37 22 45574718 45574718 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP54 53371 broad.mit.edu 37 4 77036406 77036406 + 3'UTR SNP T G G rs17001433 bycluster;byfrequency;by1000genomes TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP62 23636 broad.mit.edu 37 19 50413125 50413125 + 5'UTR SNP C A A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP62 23636 hgsc.bcm.edu 37 19 50411672 50411673 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP85 79902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73204674 73204674 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP85 79902 broad.mit.edu;ucsc.edu 37 17 73205917 73205918 + Splice_Site INS - A A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUP88 4927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5290385 5290385 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP88 4927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5322725 5322725 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP88 4927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5322749 5322749 + Silent SNP T T A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP93 9688 hgsc.bcm.edu 37 16 56875675 56875675 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP93 9688 hgsc.bcm.edu;ucsc.edu 37 16 56871614 56871614 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUP98 4928 broad.mit.edu;hgsc.bcm.edu 37 11 3797144 3797144 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq NUP98 4928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3797242 3797242 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUP98 4928 broad.mit.edu;ucsc.edu 37 11 3700799 3700799 + Silent SNP G A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUPL1 9818 broad.mit.edu 37 13 25914398 25914398 + 3'UTR SNP C T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUPL1 9818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25899186 25899186 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUPL1 9818 hgsc.bcm.edu;ucsc.edu 37 13 25876007 25876007 + Silent SNP G G C rs112477650 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUPL2 11097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23240017 23240017 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUPL2 11097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23240190 23240190 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUPL2 11097 hgsc.bcm.edu 37 7 23221797 23221798 + In_Frame_Ins INS - - CGGCAGCAACCG novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUPL2 11097 hgsc.bcm.edu 37 7 23221811 23221811 + Missense_Mutation SNP A A G rs145987368 byfrequency TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NUSAP1 51203 hgsc.bcm.edu 37 15 41650369 41650369 + Silent SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NUTF2 10204 broad.mit.edu 37 16 67899046 67899046 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUTF2 10204 broad.mit.edu 37 16 67902527 67902527 + Intron SNP G A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NUTF2 10204 broad.mit.edu 37 16 67904600 67904600 + Intron SNP G C C novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NVL 4931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 224491542 224491542 + Silent SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NWD1 284434 hgsc.bcm.edu 37 19 16910747 16910747 + Silent SNP C C T rs112320677 bycluster;byfrequency;by1000genomes TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NWD1 284434 hgsc.bcm.edu 37 19 16910780 16910780 + Silent SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NWD1 284434 hgsc.bcm.edu;ucsc.edu 37 19 16875873 16875873 + Silent SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NXF1 10482 broad.mit.edu;ucsc.edu 37 11 62569079 62569079 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NXF2 56001 hgsc.bcm.edu 37 X 101581404 101581404 + Silent SNP A G G rs13944 bycluster TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NXF2B 728343 broad.mit.edu 37 X 101615563 101615563 + Nonsense_Mutation SNP C A A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NXF2B 728343 hgsc.bcm.edu 37 X 101615546 101615546 + Silent SNP C C T rs13944 bycluster TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NXF3 56000 hgsc.bcm.edu 37 X 102337711 102337711 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NXF4 55999 broad.mit.edu 37 X 101821152 101821152 + RNA DEL A - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NXF5 55998 broad.mit.edu 37 X 101098107 101098107 + 5'UTR SNP G A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NXF5 55998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101092585 101092585 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NXNL2 158046 broad.mit.edu;hgsc.bcm.edu 37 9 91159434 91159434 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NXPH3 11248 hgsc.bcm.edu;ucsc.edu 37 17 47656509 47656509 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NXPH4 11247 broad.mit.edu 37 12 57618903 57618903 + Silent SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NXPH4 11247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57619419 57619419 + Silent SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NXPH4 11247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57619419 57619419 + Silent SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NXPH4 11247 hgsc.bcm.edu 37 12 57619000 57619000 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NXPH4 11247 hgsc.bcm.edu 37 12 57619187 57619188 + In_Frame_Ins INS - - GGC novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24878537 24878537 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24878974 24878974 + Silent SNP A A T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24884470 24884470 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24885001 24885001 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24885951 24885951 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24886608 24886608 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYNRIN 57523 hgsc.bcm.edu;ucsc.edu 37 14 24885703 24885708 + In_Frame_Del DEL GCAGGA GCAGGA - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 GCAGGA GCAGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NYX 60506 broad.mit.edu 37 X 41307152 41307152 + Nonsense_Mutation SNP C T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx NYX 60506 broad.mit.edu 37 X 41333572 41333572 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OAF 220323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 120096481 120096481 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OAS1 4938 broad.mit.edu 37 12 113355746 113355746 + Intron DEL A - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OAS1 4938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113346530 113346530 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OAS1 4938 hgsc.bcm.edu;ucsc.edu 37 12 113348901 113348901 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OAS1 4938 hgsc.bcm.edu;ucsc.edu 37 12 113357245 113357246 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OAS1 4938 hgsc.bcm.edu;ucsc.edu 37 12 113357353 113357353 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OAS2 4939 hgsc.bcm.edu;ucsc.edu 37 12 113448226 113448226 + Silent SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OAS3 4940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113379477 113379477 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OAS3 4940 hgsc.bcm.edu;ucsc.edu 37 12 113405908 113405908 + Nonsense_Mutation SNP C C G novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OAZ3 51686 broad.mit.edu;hgsc.bcm.edu 37 1 151740624 151740624 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OAZ3 51686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151740639 151740639 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBFC2A 0 broad.mit.edu 37 2 192548205 192548206 + Intron INS - T T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OBFC2A 0 broad.mit.edu 37 2 192548411 192548411 + Intron SNP C G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OBFC2A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192546733 192546733 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBFC2A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192550402 192550402 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBFC2A 0 hgsc.bcm.edu;ucsc.edu 37 2 192550347 192550347 + Silent SNP T T G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OBSCN 84033 broad.mit.edu;hgsc.bcm.edu 37 1 228403481 228403481 + Silent SNP G G C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBSCN 84033 broad.mit.edu;hgsc.bcm.edu 37 1 228459673 228459673 + Intron SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBSCN 84033 broad.mit.edu;hgsc.bcm.edu 37 1 228528242 228528242 + Silent SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq OBSCN 84033 broad.mit.edu;hgsc.bcm.edu 37 1 228559759 228559759 + Silent SNP T T C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq OBSCN 84033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228400286 228400286 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBSCN 84033 hgsc.bcm.edu 37 1 228505318 228505318 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBSCN 84033 hgsc.bcm.edu 37 1 228538568 228538568 + Missense_Mutation SNP C C G rs142615706 by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OBSCN 84033 hgsc.bcm.edu;ucsc.edu 37 1 228511298 228511298 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID OBSL1 23363 broad.mit.edu 37 2 220435111 220435111 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OBSL1 23363 broad.mit.edu;hgsc.bcm.edu 37 2 220428159 220428159 + Silent SNP C C A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OBSL1 23363 hgsc.bcm.edu 37 2 220421377 220421377 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OBSL1 23363 hgsc.bcm.edu 37 2 220431631 220431631 + Silent SNP G G T rs1043537 bycluster;byfrequency;by1000genomes TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OC90 729330 broad.mit.edu;hgsc.bcm.edu 37 8 133062109 133062109 + Intron SNP G G T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OC90 729330 hgsc.bcm.edu 37 8 133036893 133036894 + Frame_Shift_Ins INS - - G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OCA2 4948 broad.mit.edu 37 15 28000341 28000341 + 3'UTR SNP A G G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OCA2 4948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28267703 28267703 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OCEL1 79629 broad.mit.edu;hgsc.bcm.edu 37 19 17338790 17338790 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OCIAD1 54940 broad.mit.edu 37 4 48862838 48862838 + 3'UTR SNP G T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OCIAD1 54940 broad.mit.edu 37 4 48863059 48863059 + 3'UTR DEL A - - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OCIAD2 132299 broad.mit.edu;hgsc.bcm.edu 37 4 48887464 48887464 + 3'UTR SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OCIAD2 132299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48887578 48887578 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OCM 654231 broad.mit.edu 37 7 5925855 5925855 + 3'UTR SNP C A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OCRL 4952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128720994 128720994 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODAM 54959 hgsc.bcm.edu;ucsc.edu 37 4 71068051 71068051 + Intron SNP G G C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODC1 4953 hgsc.bcm.edu 37 2 10583632 10583632 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODF1 4956 hgsc.bcm.edu 37 8 103573001 103573001 + Silent SNP C C G rs3018445 bycluster;byfrequency;by1000genomes TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODF1 4956 hgsc.bcm.edu 37 8 103573001 103573001 + Silent SNP C C G rs3018445 bycluster;byfrequency;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODF1 4956 hgsc.bcm.edu 37 8 103573015 103573015 + Missense_Mutation SNP A A G rs62523271 byfrequency TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODF1 4956 hgsc.bcm.edu 37 8 103573037 103573037 + Silent SNP G G C rs62523273 bycluster;byfrequency TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODF1 4956 hgsc.bcm.edu 37 8 103573037 103573037 + Silent SNP G G C rs62523273 bycluster;byfrequency TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODF2 4957 broad.mit.edu 37 9 131258144 131258144 + Intron SNP G T T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ODF2 4957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131245102 131245102 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODF2 4957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131256864 131256864 + Silent SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODF2 4957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131256871 131256871 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODF2 4957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131256884 131256884 + Silent SNP A A G novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODF2L 57489 hgsc.bcm.edu 37 1 86851139 86851139 + Splice_Site SNP A A C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODF3 113746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 199997 199997 + Silent SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODF3L1 161753 broad.mit.edu 37 15 76016536 76016536 + 5'UTR SNP C A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ODF3L1 161753 hgsc.bcm.edu;ucsc.edu 37 15 76019407 76019407 + Frame_Shift_Del DEL C C - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123630881 123630881 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ODZ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123838862 123838862 + Splice_Site SNP C C A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123839011 123839011 + Silent SNP C C T rs191615019 by1000genomes TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ODZ1 0 hgsc.bcm.edu 37 X 123519821 123519821 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODZ1 0 hgsc.bcm.edu 37 X 123554562 123554562 + Silent SNP G G A novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODZ1 0 hgsc.bcm.edu 37 X 123654451 123654452 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ1 0 hgsc.bcm.edu;ucsc.edu 37 X 123517592 123517592 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID ODZ1 0 hgsc.bcm.edu;ucsc.edu 37 X 123556363 123556363 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ1 0 hgsc.bcm.edu;ucsc.edu 37 X 123654383 123654383 + Silent SNP G G T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID ODZ1 0 hgsc.bcm.edu;ucsc.edu 37 X 124097394 124097394 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 167645829 167645829 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 167687305 167687305 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ2 0 hgsc.bcm.edu 37 5 167545365 167545366 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ2 0 hgsc.bcm.edu 37 5 167545365 167545366 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ2 0 hgsc.bcm.edu 37 5 167617459 167617459 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODZ2 0 hgsc.bcm.edu 37 5 167689204 167689204 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODZ3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 183714119 183714119 + Silent SNP C C G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 183714853 183714853 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ3 0 hgsc.bcm.edu 37 4 183601821 183601821 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODZ3 0 hgsc.bcm.edu;ucsc.edu 37 4 183714250 183714250 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78369131 78369131 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78380861 78380861 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78412936 78412936 + Silent SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78516425 78516425 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ4 0 hgsc.bcm.edu 37 11 78523290 78523291 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ODZ4 0 hgsc.bcm.edu;ucsc.edu 37 11 78413073 78413073 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ODZ4 0 hgsc.bcm.edu;ucsc.edu 37 11 78565192 78565192 + Silent SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OFD1 8481 broad.mit.edu 37 X 13776512 13776512 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGDH 4967 broad.mit.edu;ucsc.edu 37 7 44664056 44664056 + Silent SNP G T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGDH 4967 broad.mit.edu;ucsc.edu 37 7 44733560 44733560 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGDH 4967 hgsc.bcm.edu 37 7 44747514 44747514 + Silent SNP C C T rs61756583 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OGDH 4967 hgsc.bcm.edu;ucsc.edu 37 7 44687318 44687318 + Silent SNP C C A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OGDH 4967 hgsc.bcm.edu;ucsc.edu 37 7 44713430 44713434 + Frame_Shift_Del DEL TGACC TGACC - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 TGACC TGACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGDH 4967 hgsc.bcm.edu;ucsc.edu 37 7 44747245 44747245 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OGDHL 55753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50947858 50947858 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGDHL 55753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50960187 50960187 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGDHL 55753 hgsc.bcm.edu 37 10 50943273 50943273 + 3'UTR SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OGFOD1 55239 broad.mit.edu 37 16 56510317 56510317 + 3'UTR DEL A - - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGFOD1 55239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56485531 56485531 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGFR 11054 broad.mit.edu 37 20 61442846 61442846 + Silent SNP G A A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGFR 11054 broad.mit.edu;hgsc.bcm.edu 37 20 61444100 61444100 + Missense_Mutation SNP G G T rs6122312 unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGFR 11054 hgsc.bcm.edu 37 20 61444720 61444720 + Missense_Mutation SNP A A C rs79127826 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGFR 11054 hgsc.bcm.edu 37 20 61444725 61444725 + Silent SNP G G A rs74520364 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGG1 4968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9792055 9792055 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGG1 4968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9792671 9792671 + Silent SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGG1 4968 hgsc.bcm.edu 37 3 9798842 9798842 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OGN 4969 broad.mit.edu 37 9 95147593 95147593 + 3'UTR DEL A - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGN 4969 broad.mit.edu 37 9 95165751 95165751 + 5'UTR SNP A G G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OGN 4969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95165563 95165563 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OGT 8473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70756094 70756094 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq OGT 8473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70784541 70784541 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq OGT 8473 hgsc.bcm.edu 37 X 70775921 70775921 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID OGT 8473 hgsc.bcm.edu;ucsc.edu 37 X 70756092 70756092 + Silent SNP A A G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID OGT 8473 hgsc.bcm.edu;ucsc.edu 37 X 70776831 70776831 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID OIT3 170392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74673124 74673124 + Silent SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OIT3 170392 hgsc.bcm.edu 37 10 74684103 74684103 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM1 10439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 137990174 137990174 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM1 10439 hgsc.bcm.edu 37 9 137982084 137982084 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFM2 93145 hgsc.bcm.edu;ucsc.edu 37 19 9968474 9968475 + Frame_Shift_Ins INS - - AT novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM3 118427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 102302569 102302569 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM3 118427 hgsc.bcm.edu;ucsc.edu 37 1 102290660 102290660 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFM4 10562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 53603018 53603018 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM4 10562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 53624673 53624673 + Missense_Mutation SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM4 10562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 53624774 53624774 + Silent SNP A A G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFM4 10562 hgsc.bcm.edu;ucsc.edu 37 13 53624868 53624868 + Silent SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFML2A 169611 hgsc.bcm.edu;ucsc.edu 37 9 127566584 127566584 + Silent SNP C C T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFML2B 25903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161953786 161953786 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFML2B 25903 hgsc.bcm.edu 37 1 161954034 161954034 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFML2B 25903 hgsc.bcm.edu 37 1 161993198 161993198 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFML2B 25903 hgsc.bcm.edu 37 1 161993222 161993222 + 5'UTR SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFML2B 25903 hgsc.bcm.edu;ucsc.edu 37 1 161953696 161953696 + Silent SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OLFML3 56944 broad.mit.edu 37 1 114522060 114522060 + 5'UTR SNP T C C novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OLFML3 56944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114523687 114523687 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OLFML3 56944 hgsc.bcm.edu 37 1 114522961 114522962 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OMD 4958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95177538 95177538 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OMD 4958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95179200 95179200 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OMP 4975 broad.mit.edu 37 11 76814080 76814080 + Silent SNP C T T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ONECUT1 3175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 53081592 53081592 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ONECUT1 3175 hgsc.bcm.edu 37 15 53049880 53049880 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ONECUT1 3175 hgsc.bcm.edu 37 15 53049880 53049880 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ONECUT2 9480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55143848 55143848 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OOEP 441161 broad.mit.edu 37 6 74078432 74078432 + 3'UTR SNP G A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OPA1 4976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193355797 193355797 + Silent SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPA1 4976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193366636 193366636 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPA3 80207 broad.mit.edu;hgsc.bcm.edu 37 19 46088086 46088086 + 5'UTR SNP T T C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPCML 4978 broad.mit.edu 37 11 133402361 133402362 + 5'UTR DEL GC - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OPCML 4978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 132527098 132527098 + Missense_Mutation SNP G G A rs137852691 unknown;alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPHN1 4983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 67273543 67273543 + Silent SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPHN1 4983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 67413751 67413751 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPLAH 26873 hgsc.bcm.edu 37 8 145106939 145106940 + Frame_Shift_Del DEL CC CC - rs145450236 bycluster;by1000genomes TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPLAH 26873 hgsc.bcm.edu 37 8 145106939 145106940 + Frame_Shift_Del DEL CC CC - rs145450236 bycluster;by1000genomes TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPLAH 26873 hgsc.bcm.edu 37 8 145107992 145107992 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OPLAH 26873 hgsc.bcm.edu 37 8 145113732 145113732 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPN1MW 2652 broad.mit.edu 37 X 153461744 153461744 + 3'UTR SNP C T T rs56191649 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OPN1SW 611 broad.mit.edu;hgsc.bcm.edu 37 7 128413772 128413772 + Silent SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPN1SW 611 hgsc.bcm.edu;ucsc.edu 37 7 128415817 128415817 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OPN4 94233 broad.mit.edu 37 10 88423774 88423775 + Intron DEL TG - - rs141974957 by1000genomes TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OPN4 94233 broad.mit.edu 37 10 88423774 88423775 + Intron DEL TG - - rs141974957 by1000genomes TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OPN4 94233 broad.mit.edu;hgsc.bcm.edu 37 10 88422065 88422065 + Missense_Mutation SNP G G A rs142050572 unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPN4 94233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 88418429 88418429 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPRD1 4985 broad.mit.edu 37 1 29185486 29185486 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OPRD1 4985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29185683 29185683 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPRD1 4985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29189406 29189406 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPRL1 4987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62729653 62729653 + Silent SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPRM1 4988 broad.mit.edu;hgsc.bcm.edu 37 6 154412543 154412543 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPRM1 4988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 154412361 154412361 + Silent SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPRM1 4988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 154412549 154412549 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPTC 26254 broad.mit.edu;hgsc.bcm.edu 37 1 203465362 203465362 + Missense_Mutation SNP G G A rs140125203 unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPTC 26254 broad.mit.edu;hgsc.bcm.edu 37 1 203468978 203468978 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPTC 26254 broad.mit.edu;hgsc.bcm.edu 37 1 203472874 203472874 + Splice_Site SNP G G C novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OPTC 26254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203465247 203465247 + Silent SNP C C T rs139083417 byfrequency TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10A3 26496 hgsc.bcm.edu 37 11 7960851 7960851 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10A3 26496 hgsc.bcm.edu;ucsc.edu 37 11 7960851 7960851 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10A4 283297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6897950 6897950 + Silent SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10A5 144124 broad.mit.edu 37 11 6867462 6867462 + Silent SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR10A6 390093 hgsc.bcm.edu;ucsc.edu 37 11 7949711 7949711 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10A7 121364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55614840 55614840 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10AD1 121275 hgsc.bcm.edu 37 12 48596138 48596139 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10AD1 121275 hgsc.bcm.edu 37 12 48596875 48596876 + Frame_Shift_Ins INS - - A rs144247841 bycluster;by1000genomes TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10AG1 282770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55735328 55735328 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10AG1 282770 hgsc.bcm.edu 37 11 55735031 55735031 + 3'Promoter SNP A A G rs61896162 by1000genomes TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10AG1 282770 hgsc.bcm.edu;ucsc.edu 37 11 55735474 55735474 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10AG1 282770 hgsc.bcm.edu;ucsc.edu 37 11 55735576 55735576 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10C1 442194 broad.mit.edu;hgsc.bcm.edu 37 6 29407843 29407843 + Silent SNP C C T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G2 26534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22102295 22102295 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G3 26533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22038804 22038804 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G3 26533 hgsc.bcm.edu 37 14 22038054 22038054 + Silent SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10G3 26533 hgsc.bcm.edu 37 14 22038056 22038056 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10G4 390264 broad.mit.edu;hgsc.bcm.edu 37 11 123886795 123886795 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G4 390264 broad.mit.edu;hgsc.bcm.edu 37 11 123886863 123886863 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G4 390264 broad.mit.edu;hgsc.bcm.edu 37 11 123887117 123887117 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G4 390264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123887007 123887007 + Silent SNP C C T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G7 390265 broad.mit.edu;hgsc.bcm.edu 37 11 123909163 123909163 + Silent SNP G G C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G7 390265 broad.mit.edu;hgsc.bcm.edu 37 11 123909221 123909221 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G7 390265 broad.mit.edu;hgsc.bcm.edu 37 11 123909632 123909632 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G7 390265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123908892 123908892 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10G7 390265 hgsc.bcm.edu 37 11 123909172 123909172 + Silent SNP G G A rs78239494 unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10G7 390265 hgsc.bcm.edu 37 11 123909234 123909234 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10G9 219870 broad.mit.edu;hgsc.bcm.edu 37 11 123894277 123894277 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10H1 26539 broad.mit.edu;hgsc.bcm.edu 37 19 15918103 15918103 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10H1 26539 hgsc.bcm.edu 37 19 15918527 15918527 + Silent SNP G G A rs74730938 unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10H2 26538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15839672 15839672 + Silent SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10H2 26538 hgsc.bcm.edu;ucsc.edu 37 19 15839750 15839750 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10H3 26532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15852604 15852604 + Silent SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10H4 126541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16059970 16059970 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10H4 126541 hgsc.bcm.edu;ucsc.edu 37 19 16060085 16060085 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10H5 284433 broad.mit.edu 37 19 15905371 15905371 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR10H5 284433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15904911 15904911 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10J1 26476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159410089 159410089 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10J5 127385 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159505240 159505240 + Silent SNP A A C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10K2 391107 broad.mit.edu;hgsc.bcm.edu 37 1 158390417 158390417 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10Q1 219960 hgsc.bcm.edu 37 11 57996084 57996084 + Silent SNP G G A rs61902844 bycluster;byfrequency;by1000genomes TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10S1 219873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123847986 123847986 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10S1 219873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123848361 123848361 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10T2 128360 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158368416 158368416 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10V1 390201 hgsc.bcm.edu 37 11 59481181 59481181 + Silent SNP T T G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR10W1 81341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58034733 58034733 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR10W1 81341 hgsc.bcm.edu;ucsc.edu 37 11 58035202 58035202 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR11L1 391189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248004727 248004727 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR11L1 391189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248005200 248005200 + upstream SNP G G T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR12D3 81797 broad.mit.edu;hgsc.bcm.edu 37 6 29342284 29342284 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR13A1 79290 hgsc.bcm.edu 37 10 45799065 45799065 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR13A1 79290 hgsc.bcm.edu 37 10 45799761 45799761 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR13C2 392376 broad.mit.edu;hgsc.bcm.edu 37 9 107367525 107367525 + Silent SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR13C5 138799 broad.mit.edu;hgsc.bcm.edu 37 9 107361334 107361334 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR13C5 138799 hgsc.bcm.edu 37 9 107361451 107361452 + Frame_Shift_Del DEL GC GC - rs35762823 byfrequency TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR13C8 138802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107332250 107332250 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR13C8 138802 broad.mit.edu;ucsc.edu 37 9 107331603 107331603 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR13G1 441933 hgsc.bcm.edu;ucsc.edu 37 1 247835536 247835536 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR14A16 284532 hgsc.bcm.edu 37 1 247978544 247978544 + Missense_Mutation SNP G G A rs113112592 unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR14I1 401994 hgsc.bcm.edu;ucsc.edu 37 1 248845202 248845202 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR1A1 8383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3119395 3119395 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1B1 347169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125391234 125391234 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1C1 26188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247921449 247921449 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1C1 26188 hgsc.bcm.edu;ucsc.edu 37 1 247921568 247921568 + Silent SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR1D2 4991 broad.mit.edu;hgsc.bcm.edu 37 17 2995985 2995985 + Nonsense_Mutation SNP G G T rs140264769 unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1D2 4991 broad.mit.edu;hgsc.bcm.edu 37 17 2996190 2996190 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1D4 653166 broad.mit.edu 37 17 2966855 2966855 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR1E1 8387 hgsc.bcm.edu 37 17 3301113 3301113 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1F1 4992 hgsc.bcm.edu;ucsc.edu 37 16 3254418 3254418 + Missense_Mutation SNP C C A rs61731432 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1G1 8390 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3030489 3030489 + Silent SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1G1 8390 hgsc.bcm.edu;ucsc.edu 37 17 3030271 3030271 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1I1 126370 broad.mit.edu 37 19 15198934 15198934 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR1I1 126370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15198107 15198107 + Silent SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1I1 126370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15198108 15198108 + Missense_Mutation SNP G G A rs146090785 byfrequency TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1I1 126370 hgsc.bcm.edu;ucsc.edu 37 19 15198241 15198241 + Missense_Mutation SNP G G A rs75278395 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1J2 26740 broad.mit.edu;hgsc.bcm.edu 37 9 125273078 125273078 + upstream SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1J2 26740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125273604 125273604 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1L1 26737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125424612 125424612 + Silent SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1L1 26737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125424692 125424692 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1L3 26735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125437494 125437494 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1L4 254973 hgsc.bcm.edu 37 9 125486717 125486717 + Missense_Mutation SNP G G A rs76170289 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1L8 138881 hgsc.bcm.edu;ucsc.edu 37 9 125330260 125330260 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR1M1 125963 hgsc.bcm.edu;ucsc.edu 37 19 9203934 9203934 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR1S1 219959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57982325 57982325 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2A12 346525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 143792898 143792898 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2A1 346528 broad.mit.edu 37 7 143929685 143929685 + Silent SNP G T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR2A4 79541 hgsc.bcm.edu 37 6 132021904 132021904 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AE1 81392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99474477 99474477 + Silent SNP A A G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AG1 144125 broad.mit.edu;hgsc.bcm.edu 37 11 6806985 6806985 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AG1 144125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6806283 6806283 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AG1 144125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6806389 6806389 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AG1 144125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6806547 6806547 + Silent SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AG2 338755 hgsc.bcm.edu;ucsc.edu 37 11 6789789 6789789 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2AT4 341152 broad.mit.edu;ucsc.edu 37 11 74800063 74800063 + Silent SNP G C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR2B11 127623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247614532 247614532 + Silent SNP G G A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2B2 81697 hgsc.bcm.edu 37 6 27879581 27879581 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2B3 442184 broad.mit.edu;hgsc.bcm.edu 37 6 29055049 29055049 + 5'UTR SNP C C T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2B3 442184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29054173 29054173 + Silent SNP A A G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2B3 442184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29054943 29054943 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2B3 442184 hgsc.bcm.edu 37 6 29054494 29054494 + Missense_Mutation SNP A A C rs181892071 by1000genomes TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2C1 4993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3406081 3406081 + Silent SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2C1 4993 hgsc.bcm.edu 37 16 3406757 3406757 + Frame_Shift_Del DEL T T - rs142397376 bycluster;by1000genomes TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2C3 81472 hgsc.bcm.edu 37 1 247695344 247695344 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2F1 26211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 143657717 143657717 + Silent SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2F2 135948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 143633180 143633180 + Silent SNP G G A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2G2 81470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247752125 247752125 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2G2 81470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247752195 247752195 + Silent SNP T T C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2G2 81470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247752396 247752396 + Silent SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2G2 81470 broad.mit.edu;ucsc.edu 37 1 247752478 247752478 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR2H2 7932 broad.mit.edu;hgsc.bcm.edu 37 6 29556320 29556320 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2H2 7932 hgsc.bcm.edu 37 6 29555969 29555969 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2J2 26707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29141585 29141585 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2J2 26707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29141782 29141782 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2J2 26707 hgsc.bcm.edu;ucsc.edu 37 6 29141432 29141433 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2J2(dist=89471) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29231822 29231822 + IGR SNP A A G novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2J3 442186 broad.mit.edu;hgsc.bcm.edu 37 6 29079901 29079901 + Silent SNP C C G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L13 284521 broad.mit.edu;hgsc.bcm.edu 37 1 248263038 248263038 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L2 26246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248201987 248201987 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L2 26246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248202228 248202228 + Missense_Mutation SNP T T C rs138507569 by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L3 391192 hgsc.bcm.edu 37 1 248224587 248224587 + Missense_Mutation SNP A A G rs61525219 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L8 391190 broad.mit.edu;hgsc.bcm.edu 37 1 248112339 248112339 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L8 391190 broad.mit.edu;hgsc.bcm.edu 37 1 248112361 248112361 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L8 391190 broad.mit.edu;hgsc.bcm.edu 37 1 248112511 248112511 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2L8 391190 broad.mit.edu;hgsc.bcm.edu 37 1 248112971 248112971 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2M7 391196 hgsc.bcm.edu 37 1 248487282 248487282 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T10 127069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248756885 248756885 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T12 127064 broad.mit.edu 37 1 248458511 248458511 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR2T12 127064 broad.mit.edu;hgsc.bcm.edu 37 1 248458390 248458390 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T12 127064 hgsc.bcm.edu 37 1 248458717 248458717 + Missense_Mutation SNP C C G rs71538183 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T12 127064 hgsc.bcm.edu 37 1 248458736 248458736 + Missense_Mutation SNP A A G rs28409263 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T1 26696 hgsc.bcm.edu;ucsc.edu 37 1 248569296 248569297 + Frame_Shift_Ins INS - - TGTG novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T2 401992 broad.mit.edu;hgsc.bcm.edu 37 1 248616344 248616344 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T2 401992 hgsc.bcm.edu 37 1 248617054 248617055 + Frame_Shift_Ins INS - - TG rs113236234 bycluster;by1000genomes TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T27 403239 broad.mit.edu;hgsc.bcm.edu 37 1 248813490 248813490 + Silent SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T27 403239 hgsc.bcm.edu 37 1 248813651 248813653 + In_Frame_Del DEL AGA AGA - rs113853731 unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T27 403239 hgsc.bcm.edu 37 1 248813733 248813734 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T27 403239 hgsc.bcm.edu 37 1 248814052 248814052 + Missense_Mutation SNP T T A rs61834486 bycluster TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T27 403239 hgsc.bcm.edu;ucsc.edu 37 1 248813292 248813292 + Silent SNP T T C rs71199329 bycluster;byfrequency;by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T27 403239 hgsc.bcm.edu;ucsc.edu 37 1 248813292 248813292 + Silent SNP T T C rs71199329 bycluster;byfrequency;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T29 343563 hgsc.bcm.edu 37 1 248722108 248722108 + Missense_Mutation SNP C C T rs1981236 unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T29 343563 hgsc.bcm.edu 37 1 248722671 248722671 + Missense_Mutation SNP T T A rs9439338 bycluster TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T29 343563 hgsc.bcm.edu 37 1 248722722 248722722 + Missense_Mutation SNP T T C rs1629363 bycluster;by2hit2allele TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T33 391195 broad.mit.edu;hgsc.bcm.edu 37 1 248436862 248436862 + Silent SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T34 127068 hgsc.bcm.edu 37 1 248737348 248737348 + Silent SNP G G A rs61833442 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T34 127068 hgsc.bcm.edu 37 1 248737595 248737595 + Missense_Mutation SNP A A G rs79056151 bycluster TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T34 127068 hgsc.bcm.edu 37 1 248737664 248737664 + Missense_Mutation SNP C C T rs147489167 byfrequency TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T34 127068 hgsc.bcm.edu;ucsc.edu 37 1 248737734 248737734 + Missense_Mutation SNP G G A rs946770 bycluster TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T35 403244 hgsc.bcm.edu 37 1 248801602 248801603 + Frame_Shift_Ins INS - - CA novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T35 403244 hgsc.bcm.edu 37 1 248801633 248801633 + Silent SNP A A G rs74901534 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T35 403244 hgsc.bcm.edu 37 1 248802249 248802250 + In_Frame_Ins INS - - AGA novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T35 403244 hgsc.bcm.edu 37 1 248802249 248802250 + In_Frame_Ins INS - - AGA novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T35 403244 hgsc.bcm.edu;ucsc.edu 37 1 248801912 248801912 + Silent SNP C C G rs1770044 byfrequency TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2T4 127074 broad.mit.edu;hgsc.bcm.edu 37 1 248525256 248525256 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T4 127074 broad.mit.edu;hgsc.bcm.edu 37 1 248525734 248525734 + Silent SNP T T C rs138844789 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T4 127074 hgsc.bcm.edu 37 1 248525308 248525308 + Silent SNP A A G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T4 127074 hgsc.bcm.edu 37 1 248525328 248525329 + Frame_Shift_Ins INS - - TA rs61248663 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2T8 343172 broad.mit.edu 37 1 248084574 248084574 + Silent SNP C A A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR2U1P 26695 hgsc.bcm.edu 37 6 29230683 29230683 + NCSD SNP T T C rs79868103 bycluster TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR2W1 26692 broad.mit.edu;hgsc.bcm.edu 37 6 29012082 29012082 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2W3 343171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248059095 248059095 + Silent SNP G G T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2W3 343171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248059809 248059809 + Silent SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR2W5 441932 broad.mit.edu 37 1 247655361 247655361 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR3A1 4994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3195183 3195183 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR3A1 4994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3195481 3195481 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR3A1 4994 hgsc.bcm.edu 37 17 3195191 3195191 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR3A1 4994 hgsc.bcm.edu 37 17 3195803 3195803 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR3A2 4995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3181512 3181512 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR3A4 0 broad.mit.edu;hgsc.bcm.edu 37 17 3213556 3213556 + RNA SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR3A4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3213905 3213905 + RNA SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR3A4 0 hgsc.bcm.edu 37 17 3214628 3214628 + 3'UTR SNP C C T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4A15 81328 broad.mit.edu;hgsc.bcm.edu 37 11 55135733 55135733 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4A16 81327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55111083 55111083 + Missense_Mutation SNP G G T rs143065334 byfrequency;alternate_allele TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq OR4A5 81318 broad.mit.edu;hgsc.bcm.edu 37 11 51412339 51412339 + Silent SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4A5 81318 hgsc.bcm.edu;ucsc.edu 37 11 51411740 51411740 + Missense_Mutation SNP A A G rs35083184 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4B1 119765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 48238947 48238947 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C12 283093 broad.mit.edu;hgsc.bcm.edu 37 11 50003804 50003804 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C12 283093 broad.mit.edu;hgsc.bcm.edu 37 11 50003858 50003858 + Silent SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C12 283093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 50003264 50003264 + Silent SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C13 283092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 49974717 49974717 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C15 81309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55321820 55321820 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C15 81309 hgsc.bcm.edu 37 11 55322611 55322635 + Frame_Shift_Del DEL TCTCTGAGAACACACAGTTCTGAAG TCTCTGAGAACACACAGTTCTGAAG - rs72140406 unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 TCTCTGAGAACACACAGTTCTGAAG TCTCTGAGAACACACAGTTCTGAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C15 81309 hgsc.bcm.edu 37 11 55322635 55322635 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C16 219428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55339616 55339616 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C16 219428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55339950 55339950 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C3 256144 broad.mit.edu;hgsc.bcm.edu 37 11 48346714 48346714 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C3 256144 broad.mit.edu;hgsc.bcm.edu 37 11 48346849 48346849 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C3 256144 hgsc.bcm.edu 37 11 48346661 48346669 + In_Frame_Del DEL TTGCTGATC TTGCTGATC - rs138704181 bycluster;by1000genomes TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 TTGCTGATC TTGCTGATC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4C3 256144 hgsc.bcm.edu;ucsc.edu 37 11 48346661 48346669 + In_Frame_Del DEL TTGCTGATC TTGCTGATC - rs138704181 bycluster;by1000genomes TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 TTGCTGATC TTGCTGATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C45 403257 hgsc.bcm.edu 37 11 48367136 48367136 + Missense_Mutation SNP C C T rs78927905 bycluster;byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C45 403257 hgsc.bcm.edu 37 11 48373827 48373827 + Missense_Mutation SNP G G A rs80081241 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C45 403257 hgsc.bcm.edu 37 11 48373827 48373827 + Missense_Mutation SNP G G A rs80081241 bycluster;byfrequency TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C45 403257 hgsc.bcm.edu;ucsc.edu 37 11 48373834 48373834 + Missense_Mutation SNP A A G rs75261463 bycluster TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C4P 79550 hgsc.bcm.edu 37 11 48367136 48367136 + NCSD SNP C C T rs78927905 bycluster;byfrequency TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4C4P 79550 hgsc.bcm.edu 37 11 48367455 48367455 + NCSD SNP G G A rs79175163 bycluster;byfrequency TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4C4P 79550 hgsc.bcm.edu 37 11 48367474 48367474 + NCSD SNP A A G rs75116918 bycluster;byfrequency TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4C4P 79550 hgsc.bcm.edu 37 11 48367474 48367474 + NCSD SNP A A G rs75116918 bycluster;byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4C4P 79550 hgsc.bcm.edu 37 11 48367499 48367499 + NCSD SNP A A G rs72896822 bycluster;byfrequency;by1000genomes TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4C6 219432 broad.mit.edu;hgsc.bcm.edu 37 11 55433591 55433591 + downstream SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C6 219432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55432900 55432900 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4C6 219432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55433031 55433031 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4D10 390197 hgsc.bcm.edu 37 11 59244948 59244948 + Silent SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4D1 26689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56232813 56232813 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4D1 26689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56233390 56233390 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4D2 124538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56247641 56247641 + Missense_Mutation SNP G G A rs149114670 unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4D5 219875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123810587 123810587 + Silent SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4D9 390199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59282457 59282457 + Silent SNP C C T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2 26686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22133740 22133740 + Silent SNP C C T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=116994) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22251232 22251232 + IGR SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=175482) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22309720 22309720 + IGR SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=332122) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22466360 22466360 + IGR SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=457970) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22592208 22592208 + IGR SNP G G C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=482185) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22616423 22616423 + IGR SNP A A G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=638071) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22772309 22772309 + IGR SNP C C T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=654336) 0 broad.mit.edu;hgsc.bcm.edu 37 14 22788574 22788574 + IGR SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=654395) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22788633 22788633 + IGR SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=797811) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 22932049 22932049 + IGR SNP G G C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4E2(dist=884383) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23018621 23018621 + IGR SNP A A C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4F15 390649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 102358604 102358604 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4F4 26682 hgsc.bcm.edu 37 15 102462857 102462857 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4F4 26682 hgsc.bcm.edu 37 15 102463219 102463219 + Missense_Mutation SNP T T C rs1638318 bycluster;bysubmitter TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4F4 26682 hgsc.bcm.edu 37 15 102463219 102463219 + Missense_Mutation SNP T T C rs1638318 bycluster;bysubmitter TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR4F6 390648 hgsc.bcm.edu;ucsc.edu 37 15 102346601 102346601 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4K13 390433 broad.mit.edu;ucsc.edu 37 14 20502565 20502565 + Missense_Mutation SNP A G G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR4K14 122740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20483200 20483200 + Silent SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4K15 81127 broad.mit.edu;ucsc.edu 37 14 20444219 20444219 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR4K1 79544 broad.mit.edu;hgsc.bcm.edu 37 14 20403973 20403973 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4K1 79544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20403917 20403917 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4K1 79544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20404157 20404157 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4K2 390431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20344686 20344686 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4K5 79317 hgsc.bcm.edu;ucsc.edu 37 14 20389123 20389123 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4M1 441670 hgsc.bcm.edu 37 14 20249071 20249071 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4M2 390538 broad.mit.edu;hgsc.bcm.edu 37 15 22369272 22369272 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4N2 390429 broad.mit.edu 37 14 20296164 20296164 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR4N2 390429 broad.mit.edu 37 14 20296229 20296229 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR4N2 390429 hgsc.bcm.edu 37 14 20296055 20296056 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4N2 390429 hgsc.bcm.edu 37 14 20296055 20296056 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4N3P 390539 broad.mit.edu 37 15 22414024 22414024 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR4N3P(dist=51945) 0 hgsc.bcm.edu 37 15 22466340 22466340 + IGR SNP C C A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4N3P(dist=68578) 0 broad.mit.edu;hgsc.bcm.edu 37 15 22482973 22482973 + IGR SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4N3P(dist=75624) 0 hgsc.bcm.edu 37 15 22490019 22490019 + IGR SNP T T C rs112521162 bycluster;by1000genomes TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4P4 81300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55405910 55405910 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4P4 81300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55406262 55406262 + Silent SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4P4 81300 broad.mit.edu;ucsc.edu 37 11 55406555 55406555 + Missense_Mutation SNP A G G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR4P4(dist=8596) 0 hgsc.bcm.edu;ucsc.edu 37 11 55415368 55415368 + IGR SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4Q3 441669 broad.mit.edu;hgsc.bcm.edu 37 14 20216035 20216035 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR4S2 219431 broad.mit.edu;ucsc.edu 37 11 55418663 55418663 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR51A2 401667 broad.mit.edu;hgsc.bcm.edu 37 11 4976107 4976107 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51B4 79339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5322438 5322438 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51B4 79339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5323105 5323105 + Silent SNP C C G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51B4 79339 hgsc.bcm.edu 37 11 5322392 5322392 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR51B4 79339 hgsc.bcm.edu;ucsc.edu 37 11 5322937 5322937 + Silent SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR51B5 282763 hgsc.bcm.edu;ucsc.edu 37 11 5364542 5364558 + Frame_Shift_Del DEL CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG - rs147062602 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51B5 282763 hgsc.bcm.edu;ucsc.edu 37 11 5364542 5364558 + Frame_Shift_Del DEL CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG - rs147062602 by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51D1 390038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4661302 4661302 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51D1 390038 hgsc.bcm.edu;ucsc.edu 37 11 4661043 4661044 + Frame_Shift_Ins INS - - CC novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51E1 143503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4674482 4674482 + Silent SNP T T G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51E1 143503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4674702 4674702 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51F1 256892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4790883 4790883 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51I2 390064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5475160 5475160 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51L1 119682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5020987 5020987 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51Q1 390061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5443672 5443672 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51S1 119692 hgsc.bcm.edu 37 11 4870047 4870047 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR51T1 401665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4903629 4903629 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51T1 401665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4903717 4903717 + Silent SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51T1 401665 hgsc.bcm.edu;ucsc.edu 37 11 4903098 4903098 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR51V1 283111 broad.mit.edu;ucsc.edu 37 11 5221093 5221093 + Missense_Mutation SNP C T T rs182727082 by1000genomes TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR51V1 283111 hgsc.bcm.edu 37 11 5221519 5221519 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR51V1 283111 hgsc.bcm.edu 37 11 5221676 5221676 + Silent SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR52A4 390053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5142378 5142378 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52A5 390054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5152922 5152922 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52B4 143496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4388624 4388624 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52B4 143496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4389154 4389154 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52D1 390066 hgsc.bcm.edu 37 11 5510540 5510541 + Frame_Shift_Ins INS - - GGCT novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR52E4 390081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5906001 5906001 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52E8 390079 broad.mit.edu;hgsc.bcm.edu 37 11 5878479 5878479 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52E8 390079 hgsc.bcm.edu;ucsc.edu 37 11 5878042 5878042 + Silent SNP A A G novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR52I1 390037 broad.mit.edu;ucsc.edu 37 11 4616186 4616186 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR52I2 143502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4608985 4608985 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068157 5068157 + Silent SNP C C T rs149427006 unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068193 5068193 + Silent SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068347 5068347 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068523 5068523 + Silent SNP A A T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068545 5068545 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52J3 119679 hgsc.bcm.edu 37 11 5068656 5068656 + Nonsense_Mutation SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52K1 390036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4510760 4510760 + Silent SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52L1 338751 broad.mit.edu;hgsc.bcm.edu 37 11 6007950 6007950 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52N2 390077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5841740 5841740 + Silent SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52R1 119695 hgsc.bcm.edu 37 11 4825594 4825594 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR52W1 120787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6220794 6220794 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR52W1 120787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6220795 6220795 + Silent SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR56A3 390083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5969272 5969272 + Silent SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR56A4 120793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6023936 6023936 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR56A4 120793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6024124 6024124 + Silent SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR56A5 390084 broad.mit.edu 37 11 5988973 5988973 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5A2 219981 hgsc.bcm.edu;ucsc.edu 37 11 59190140 59190140 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5AP2 338675 broad.mit.edu;ucsc.edu 37 11 56409234 56409234 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5AR1 219493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56431747 56431747 + Nonsense_Mutation SNP G G T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5AR1 219493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56431824 56431824 + Silent SNP C C A rs144241394 unknown;alternate_allele TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5AR1 219493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56432011 56432011 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5AU1 390445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21623848 21623848 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5AU1 390445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21624096 21624096 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5B12 390191 hgsc.bcm.edu;ucsc.edu 37 11 58207098 58207098 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5B3 441608 hgsc.bcm.edu;ucsc.edu 37 11 58170027 58170027 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5D14 219436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55563209 55563209 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5D18 219438 hgsc.bcm.edu;ucsc.edu 37 11 55587894 55587896 + In_Frame_Del DEL CAA CAA - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 CAA CAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5E1P 26343 broad.mit.edu 37 11 7870650 7870650 + Frame_Shift_Del DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5F1 338674 broad.mit.edu;hgsc.bcm.edu 37 11 55761854 55761854 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5F1 338674 hgsc.bcm.edu 37 11 55761256 55761256 + Silent SNP A A G rs77110658 bycluster;byfrequency;by1000genomes TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5H1 26341 broad.mit.edu 37 3 97851689 97851689 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5H1 26341 hgsc.bcm.edu;ucsc.edu 37 3 97852455 97852456 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5H15 403274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 97887843 97887843 + Silent SNP A A G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5H2 79310 broad.mit.edu;hgsc.bcm.edu 37 3 98001737 98001737 + Silent SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5H6 79295 hgsc.bcm.edu;ucsc.edu 37 3 97983488 97983496 + In_Frame_Del DEL TGTAACCAC TGTAACCAC - rs139831483 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 TGTAACCAC TGTAACCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5H6 79295 hgsc.bcm.edu;ucsc.edu 37 3 97983488 97983496 + In_Frame_Del DEL TGTAACCAC TGTAACCAC - rs139831483 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TGTAACCAC TGTAACCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5I1 10798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55703464 55703464 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5J2 282775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55944821 55944821 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5J2 282775 hgsc.bcm.edu;ucsc.edu 37 11 55944758 55944759 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5K2 402135 hgsc.bcm.edu 37 3 98216592 98216592 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5K3 403277 hgsc.bcm.edu 37 3 98110406 98110407 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5K4 403278 broad.mit.edu 37 3 98073661 98073661 + 3'UTR SNP T A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5L1 219437 broad.mit.edu;hgsc.bcm.edu 37 11 55579228 55579228 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5L1 219437 broad.mit.edu;hgsc.bcm.edu 37 11 55579578 55579578 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5M10 390167 hgsc.bcm.edu 37 11 56344844 56344851 + Frame_Shift_Del DEL CATTGAAG CATTGAAG - rs148438199 by1000genomes TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 CATTGAAG CATTGAAG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5M10 390167 hgsc.bcm.edu 37 11 56344846 56344846 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5M10 390167 hgsc.bcm.edu 37 11 56344847 56344847 + Silent SNP T T G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5M1 390168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56380039 56380039 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5M8 219484 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56258042 56258042 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5M8 219484 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56258050 56258050 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5M8 219484 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56258051 56258051 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5P2 120065 broad.mit.edu;hgsc.bcm.edu 37 11 7818120 7818120 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5P2 120065 hgsc.bcm.edu 37 11 7817856 7817856 + Missense_Mutation SNP C C T rs78460198 bycluster;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5P2 120065 hgsc.bcm.edu 37 11 7817856 7817856 + Missense_Mutation SNP C C T rs78460198 bycluster;by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5P2 120065 hgsc.bcm.edu 37 11 7818383 7818384 + In_Frame_Ins INS - - ATATGGTTACCAGGTAGATGC novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5P2 120065 hgsc.bcm.edu 37 11 7818386 7818387 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5R1 219479 broad.mit.edu;ucsc.edu 37 11 56185258 56185258 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5T1 390155 hgsc.bcm.edu 37 11 56043250 56043253 + Frame_Shift_Del DEL ATCT ATCT - novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 ATCT ATCT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5T2 219464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55999686 55999686 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5T2 219464 hgsc.bcm.edu 37 11 55999588 55999588 + Silent SNP T T C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5T2 219464 hgsc.bcm.edu;ucsc.edu 37 11 56000108 56000108 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR5T3 390154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56020415 56020415 + Missense_Mutation SNP C C A rs149435695 unknown;alternate_allele TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5V1 81696 broad.mit.edu 37 6 29323659 29323659 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR5V1 81696 broad.mit.edu;hgsc.bcm.edu 37 6 29323588 29323588 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5W2 390148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55681565 55681565 + Missense_Mutation SNP C C T rs148084259 unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR5W2 390148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55681849 55681849 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6A2 8590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6816240 6816240 + Missense_Mutation SNP G G A rs2741745 unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6B2 389090 broad.mit.edu;hgsc.bcm.edu 37 2 240968847 240968847 + downstream SNP A A G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6C1 390321 hgsc.bcm.edu 37 12 55714409 55714410 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6C2 341416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55846275 55846275 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6C3 254786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55725604 55725604 + Silent SNP G G T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6C4 341418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55945508 55945508 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6C6 283365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55688731 55688731 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6C68 403284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55886972 55886972 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6F1 343169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247875599 247875599 + Missense_Mutation SNP G G T rs144440883 byfrequency;alternate_allele TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6F1 343169 hgsc.bcm.edu 37 1 247875706 247875706 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6F1(dist=26696) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247902753 247902753 + IGR SNP A A G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6K2 81448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158670021 158670021 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6K2 81448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158670428 158670428 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6K2 81448 hgsc.bcm.edu;ucsc.edu 37 1 158669955 158669955 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6M1 390261 hgsc.bcm.edu;ucsc.edu 37 11 123676859 123676859 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6N1 128372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158735823 158735823 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6N1 128372 hgsc.bcm.edu;ucsc.edu 37 1 158735712 158735712 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6N1 128372 hgsc.bcm.edu;ucsc.edu 37 1 158735945 158735945 + Silent SNP G G A rs138618527 byfrequency TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6P1 128366 hgsc.bcm.edu 37 1 158532614 158532614 + NCSD SNP G G A rs41273499 bycluster;byfrequency;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6P1 128366 hgsc.bcm.edu 37 1 158533336 158533336 + NCSD SNP G G C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6S1 341799 hgsc.bcm.edu;ucsc.edu 37 14 21109071 21109071 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR6T1 219874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123814182 123814182 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR6V1 346517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142749937 142749937 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7A10 390892 broad.mit.edu;hgsc.bcm.edu 37 19 14952548 14952548 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7A10 390892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14952067 14952067 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7A10 390892 hgsc.bcm.edu 37 19 14952560 14952560 + Missense_Mutation SNP G G T rs12985894 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7A5 26659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14938974 14938974 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7C1 26664 hgsc.bcm.edu 37 19 14910636 14910636 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7C1 26664 hgsc.bcm.edu 37 19 14910638 14910638 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7C1 26664 hgsc.bcm.edu 37 19 14910638 14910638 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7D2 162998 broad.mit.edu 37 19 9297402 9297402 + 3'UTR SNP C T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR7D2 162998 broad.mit.edu 37 19 9297415 9297415 + 3'UTR SNP G C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR7D2 162998 hgsc.bcm.edu;ucsc.edu 37 19 9296955 9296955 + Silent SNP A A G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR7D2 162998 hgsc.bcm.edu;ucsc.edu 37 19 9297034 9297034 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7D4 125958 broad.mit.edu;hgsc.bcm.edu 37 19 9325393 9325393 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7E37P 100506759 broad.mit.edu 37 13 42005884 42005885 + RNA INS - A A rs34102051 unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR7E5P 219445 broad.mit.edu 37 11 55746807 55746807 + 3'UTR SNP A T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR7E91P 79315 broad.mit.edu 37 2 71256242 71256242 + RNA SNP T C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR7G1 125962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9225524 9225524 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7G1 125962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9226001 9226001 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7G2 390882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9213720 9213720 + Missense_Mutation SNP G G C rs187723452 by1000genomes;alternate_allele TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7G3 390883 hgsc.bcm.edu 37 19 9236698 9236699 + Frame_Shift_Ins INS - - ATGGT rs111867493 bycluster;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7G3 390883 hgsc.bcm.edu;ucsc.edu 37 19 9236856 9236856 + Silent SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR7G3 390883 hgsc.bcm.edu;ucsc.edu 37 19 9237030 9237030 + Silent SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR8B12 219858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124413242 124413242 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8B12 219858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124413531 124413531 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8B12 219858 hgsc.bcm.edu;ucsc.edu 37 11 124412848 124412848 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR8B3 390271 broad.mit.edu;hgsc.bcm.edu 37 11 124266328 124266328 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8B8 26493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124310503 124310503 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8B8 26493 hgsc.bcm.edu 37 11 124310505 124310505 + Silent SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR8B8 26493 hgsc.bcm.edu;ucsc.edu 37 11 124310727 124310727 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8D2 283160 hgsc.bcm.edu;ucsc.edu 37 11 124189235 124189235 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR8D4 338662 broad.mit.edu;ucsc.edu 37 11 123777914 123777914 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR8G1 26494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124121146 124121146 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8G1 26494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124121147 124121147 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8G2 26492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124095984 124095984 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8G2 26492 hgsc.bcm.edu 37 11 124096257 124096257 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8G5 219865 broad.mit.edu;hgsc.bcm.edu 37 11 124135620 124135620 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8G5 219865 hgsc.bcm.edu 37 11 124134972 124134973 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8H1 219469 broad.mit.edu 37 11 56057618 56057618 + Silent SNP T C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR8I2 120586 hgsc.bcm.edu 37 11 55860880 55860880 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8J3 81168 broad.mit.edu 37 11 55904779 55904779 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR8J3 81168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55904652 55904652 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8K5 219453 hgsc.bcm.edu;ucsc.edu 37 11 55926954 55926954 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR8S1 341568 broad.mit.edu 37 12 48921863 48921863 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR8U8 504189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56143438 56143438 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR8U8 504189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56143439 56143439 + Silent SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR9G1 390174 hgsc.bcm.edu 37 11 56468235 56468235 + Silent SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR9G4 283189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56510375 56510375 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OR9G4 283189 hgsc.bcm.edu 37 11 56510711 56510711 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OR9G9 504191 broad.mit.edu 37 11 56468430 56468430 + Silent SNP C T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OR9K2 441639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55523606 55523606 + Silent SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORAI1 84876 hgsc.bcm.edu 37 12 122064774 122064779 + In_Frame_Del DEL CCGCCA CCGCCA - rs141919534 bycluster;by1000genomes TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 CCGCCA CCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORAI1 84876 hgsc.bcm.edu 37 12 122064774 122064779 + In_Frame_Del DEL CCGCCA CCGCCA - rs141919534 bycluster;by1000genomes TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 CCGCCA CCGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC1 4998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 52849596 52849596 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC1 4998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 52851529 52851529 + Silent SNP T T A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC1 4998 hgsc.bcm.edu;ucsc.edu 37 1 52867881 52867881 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC1L 0 hgsc.bcm.edu 37 1 52847347 52847347 + Silent SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ORC1L 0 hgsc.bcm.edu 37 1 52849148 52849148 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ORC2 4999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201776015 201776015 + RNA SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC2L 0 broad.mit.edu 37 2 201775984 201775984 + 3'UTR SNP T G G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ORC2L 0 broad.mit.edu 37 2 201778390 201778402 + Intron DEL ACTTGGCAGATAC - - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 ACTTGGCAGATAC ACTTGGCAGATAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ORC2L 0 broad.mit.edu 37 2 201778390 201778402 + Intron DEL ACTTGGCAGATAC - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 ACTTGGCAGATAC ACTTGGCAGATAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ORC2L 0 hgsc.bcm.edu 37 2 201814292 201814292 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ORC3 23595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88367719 88367719 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC4 5000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 148693257 148693257 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC4 5000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 148693265 148693265 + Silent SNP A A T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC4 5000 hgsc.bcm.edu;ucsc.edu 37 2 148695897 148695897 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC5 5001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 103777250 103777250 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORC6 23594 broad.mit.edu;hgsc.bcm.edu 37 16 46730054 46730054 + Intron SNP G G T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORMDL1 94101 broad.mit.edu 37 2 190640204 190640204 + Intron SNP A G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ORMDL2 29095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56213245 56213245 + Silent SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ORMDL3 94103 broad.mit.edu;ucsc.edu 37 17 38079479 38079479 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OS9 10956 broad.mit.edu 37 12 58114744 58114744 + 3'UTR SNP C T T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBP2 23762 broad.mit.edu 37 22 31091334 31091334 + Silent SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBP2 23762 broad.mit.edu 37 22 31302447 31302447 + 3'UTR SNP T C C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBP2 23762 broad.mit.edu 37 22 31302452 31302452 + 3'UTR DEL T - - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBP2 23762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31266569 31266569 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBP 5007 broad.mit.edu 37 11 59342781 59342781 + 3'UTR DEL C - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBP 5007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59361486 59361486 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL10 114884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 31774806 31774806 + Silent SNP G G T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL10 114884 hgsc.bcm.edu 37 3 31712424 31712424 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSBPL11 114885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 125286405 125286405 + Nonsense_Mutation SNP A A C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL1A 114876 hgsc.bcm.edu;ucsc.edu 37 18 21898718 21898721 + Frame_Shift_Del DEL ACCA ACCA - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 ACCA ACCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL2 9885 broad.mit.edu 37 20 60859431 60859431 + Intron DEL T - - rs112769454 unknown;alternate_allele TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL2 9885 broad.mit.edu 37 20 60859431 60859431 + Intron DEL T - - rs112769454 unknown;alternate_allele TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL2 9885 hgsc.bcm.edu 37 20 60859155 60859155 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSBPL3 26031 broad.mit.edu;hgsc.bcm.edu 37 7 24874088 24874088 + Intron SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL3 26031 hgsc.bcm.edu;ucsc.edu 37 7 24839885 24839885 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL5 114879 broad.mit.edu 37 11 3109284 3109285 + 3'UTR INS - C C rs3217567 bycluster;by1000genomes TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL5 114879 broad.mit.edu 37 11 3109495 3109495 + Silent SNP G A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL5 114879 broad.mit.edu 37 11 3150289 3150289 + Silent SNP C T T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL5 114879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3109542 3109542 + Missense_Mutation SNP G G A rs150730024 unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL6 114880 broad.mit.edu 37 2 179260742 179260743 + 3'UTR INS - GTGT GTGT novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu 37 2 179185050 179185050 + 5'UTR SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu 37 2 179185056 179185056 + 5'UTR SNP A A G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179203777 179203777 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179253841 179253841 + Silent SNP C C G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179255817 179255817 + Silent SNP T T G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL7 114881 broad.mit.edu 37 17 45891939 45891939 + Silent SNP G C C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL7 114881 broad.mit.edu 37 17 45897684 45897684 + 5'UTR SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSBPL7 114881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 45894652 45894652 + Silent SNP G G A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL8 114882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 76786494 76786494 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL9 114883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 52249639 52249639 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSBPL9 114883 hgsc.bcm.edu;ucsc.edu 37 1 52214087 52214087 + Intron SNP A A T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSCAR 126014 broad.mit.edu 37 19 54598464 54598464 + 3'UTR SNP C T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSCAR 126014 hgsc.bcm.edu 37 19 54600307 54600307 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSGEP 55644 broad.mit.edu;ucsc.edu 37 14 20916148 20916148 + Silent SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSGEPL1 64172 hgsc.bcm.edu 37 2 190618708 190618708 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSGIN1 29948 hgsc.bcm.edu 37 16 83984776 83984776 + Missense_Mutation SNP A A C rs28555129 bycluster;byfrequency;by1000genomes TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSGIN1 29948 hgsc.bcm.edu 37 16 83984776 83984776 + Missense_Mutation SNP A A C rs28555129 bycluster;byfrequency;by1000genomes TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSGIN2 734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 90937536 90937536 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSM 5008 broad.mit.edu;hgsc.bcm.edu 37 22 30659850 30659850 + 3'UTR SNP C C G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSMR 9180 broad.mit.edu;hgsc.bcm.edu 37 5 38886351 38886351 + 3'UTR SNP T T C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSMR 9180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38921794 38921794 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSMR 9180 hgsc.bcm.edu;ucsc.edu 37 5 38886147 38886147 + Silent SNP T T G novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSTalpha 0 broad.mit.edu 37 3 195959460 195959460 + Intron SNP G A A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSTalpha 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 195954575 195954575 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OSTalpha 0 hgsc.bcm.edu;ucsc.edu 37 3 195955792 195955792 + Splice_Site SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OSTBETA 0 broad.mit.edu 37 15 65342250 65342250 + 5'UTR SNP C T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OSTCL 0 broad.mit.edu 37 6 159262512 159262512 + 3'UTR DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTC 5009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 38262963 38262963 + Silent SNP C C T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTC 5009 hgsc.bcm.edu 37 X 38211976 38211976 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTOA 146183 hgsc.bcm.edu 37 16 21712268 21712268 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTOA 146183 hgsc.bcm.edu;ucsc.edu 37 16 21690540 21690540 + Intron SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOF 9381 broad.mit.edu 37 2 26698885 26698885 + Missense_Mutation SNP C A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTOF 9381 broad.mit.edu 37 2 26717855 26717855 + Silent SNP C T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTOF 9381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26684967 26684967 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOF 9381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26698883 26698883 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOF 9381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26703722 26703722 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOF 9381 hgsc.bcm.edu 37 2 26687848 26687848 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTOL1 131149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 161221212 161221212 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOL1 131149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 161221335 161221335 + Missense_Mutation SNP G G C rs182735973 by1000genomes;alternate_allele TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOP1 133060 broad.mit.edu;hgsc.bcm.edu 37 4 4199146 4199146 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTOP1 133060 hgsc.bcm.edu 37 4 4190683 4190683 + Silent SNP G G A rs116072164 byfrequency TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTOP1 133060 hgsc.bcm.edu 37 4 4199808 4199808 + Silent SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTOP2 92736 broad.mit.edu;hgsc.bcm.edu 37 17 72920812 72920812 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUB1 55611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63764641 63764641 + Silent SNP C C A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUB2 78990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94511094 94511094 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD3 23252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20224088 20224088 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD3 23252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20233088 20233088 + Silent SNP A A G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD4 54726 broad.mit.edu 37 4 146058470 146058470 + 3'UTR SNP T C C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTUD4 54726 broad.mit.edu;hgsc.bcm.edu 37 4 146063450 146063450 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD4 54726 hgsc.bcm.edu 37 4 146063397 146063398 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD4 54726 hgsc.bcm.edu 37 4 146076739 146076739 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD4 54726 hgsc.bcm.edu 37 4 146086365 146086365 + Intron SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTUD4 54726 hgsc.bcm.edu;ucsc.edu 37 4 146085382 146085382 + Intron SNP A A G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD6A 139562 broad.mit.edu 37 X 69282742 69282742 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTUD6B 51633 broad.mit.edu 37 8 92082471 92082471 + 5'UTR SNP T C C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTUD6B 51633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 92083453 92083453 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD7B 56957 broad.mit.edu 37 1 149935950 149935950 + Intron DEL C - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OTUD7B 56957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 149920957 149920957 + Silent SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD7B 56957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 149920966 149920966 + Silent SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTUD7B 56957 hgsc.bcm.edu;ucsc.edu 37 1 149921598 149921598 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OTX1 5013 broad.mit.edu;hgsc.bcm.edu 37 2 63283088 63283088 + Silent SNP C C A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTX1 5013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63282664 63282664 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTX1 5013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63283120 63283120 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OTX2 5015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 57271023 57271023 + Silent SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OVCH1 341350 broad.mit.edu;hgsc.bcm.edu 37 12 29640641 29640641 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OVCH1 341350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 29629166 29629166 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq OVCH1 341350 hgsc.bcm.edu 37 12 29597203 29597203 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OVCH2 341277 broad.mit.edu;ucsc.edu 37 11 7723751 7723751 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OVCH2 341277 hgsc.bcm.edu;ucsc.edu 37 11 7713157 7713157 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OVGP1 5016 hgsc.bcm.edu 37 1 111957519 111957520 + In_Frame_Ins INS - - CAGGGGTCAGGGTCTTTTCCC novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OVGP1 5016 hgsc.bcm.edu 37 1 111957523 111957524 + In_Frame_Ins INS - - GGTCAGGGTCTTCTGTCCAGT novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OVGP1 5016 hgsc.bcm.edu 37 1 111957524 111957592 + In_Frame_Del DEL GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA - novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OVGP1 5016 hgsc.bcm.edu 37 1 111957592 111957592 + Missense_Mutation SNP A A G rs56294468 bycluster;byfrequency;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OVGP1 5016 hgsc.bcm.edu 37 1 111957592 111957592 + Missense_Mutation SNP A A G rs56294468 bycluster;byfrequency;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OVOL2 58495 hgsc.bcm.edu;ucsc.edu 37 20 18005499 18005499 + Silent SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OXA1L 5018 broad.mit.edu 37 14 23240790 23240790 + 3'UTR SNP G C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx OXA1L 5018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23239464 23239464 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OXCT1 5019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41794778 41794778 + Splice_Site SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OXCT1 5019 hgsc.bcm.edu;ucsc.edu 37 5 41807505 41807505 + Silent SNP T T A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OXER1 165140 hgsc.bcm.edu;ucsc.edu 37 2 42991163 42991163 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID OXSM 54995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 25832713 25832713 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OXSM 54995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 25835880 25835880 + Silent SNP T T G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OXSR1 9943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38287677 38287677 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OXSR1 9943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38294372 38294372 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq OXTR 5021 broad.mit.edu 37 3 8794521 8794521 + 3'UTR DEL C - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RX1 5023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3807223 3807223 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX1 5023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3819428 3819428 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX2 22953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133196058 133196058 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX2 22953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133198270 133198270 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX2 22953 hgsc.bcm.edu 37 12 133198303 133198303 + Silent SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P2RX2 22953 hgsc.bcm.edu;ucsc.edu 37 12 133198066 133198067 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX3 5024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57117325 57117325 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX3 5024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57118271 57118271 + Silent SNP C C T novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX4 5025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121655012 121655012 + Silent SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX4 5025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121660766 121660766 + Silent SNP G G A rs140643624 unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RX7 5027 hgsc.bcm.edu;ucsc.edu 37 12 121593877 121593877 + Splice_Region SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P2RY10 27334 hgsc.bcm.edu;ucsc.edu 37 X 78216453 78216453 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P2RY11 5032 broad.mit.edu 37 19 10222268 10222268 + 5'UTR SNP G A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY11 5032 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10225224 10225224 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RY12 64805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151056476 151056476 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RY13 53829 broad.mit.edu 37 3 151045534 151045535 + 3'UTR INS - G G rs71728321 unknown;alternate_allele TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY13 53829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151045862 151045862 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RY14 9934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150931635 150931635 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RY2 5029 broad.mit.edu 37 11 72947358 72947358 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY2 5029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 72945224 72945224 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P2RY4 5030 broad.mit.edu 37 X 69479530 69479530 + 5'UTR DEL C - - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY6 5031 broad.mit.edu 37 11 73008033 73008033 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY6 5031 broad.mit.edu 37 11 73008585 73008585 + 3'UTR SNP A T T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY8 286530 broad.mit.edu 37 X 1585028 1585028 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx P2RY8 286530 hgsc.bcm.edu 37 X 1585211 1585211 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P2RY8 286530 hgsc.bcm.edu;ucsc.edu 37 X 1585213 1585213 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P4HA1 5033 hgsc.bcm.edu;ucsc.edu 37 10 74790028 74790028 + Splice_Site SNP C C T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P4HA1 5033 hgsc.bcm.edu;ucsc.edu 37 10 74806681 74806681 + Splice_Site SNP A A C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P4HA2 8974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131543565 131543565 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq P4HA3 283208 hgsc.bcm.edu 37 11 73978334 73978334 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID P704P 0 broad.mit.edu 37 14 20010458 20010458 + Intron SNP T C C rs12106535 bycluster;byfrequency TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAAF1 80227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73638349 73638349 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAAF1 80227 hgsc.bcm.edu;ucsc.edu 37 11 73620605 73620605 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 broad.mit.edu 37 8 101724606 101724606 + Missense_Mutation SNP G A A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPC1 26986 broad.mit.edu;hgsc.bcm.edu 37 8 101719135 101719135 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PABPC1 26986 broad.mit.edu;hgsc.bcm.edu 37 8 101725345 101725345 + Silent SNP T T G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PABPC1 26986 broad.mit.edu;hgsc.bcm.edu 37 8 101725366 101725366 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PABPC1 26986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101724674 101724674 + Silent SNP A A G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101717834 101717834 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101718965 101718965 + Missense_Mutation SNP G G A rs62513921 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101718968 101718968 + Missense_Mutation SNP C C T rs62513922 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101719004 101719004 + Missense_Mutation SNP G G A rs62513924 bycluster;by1000genomes TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101721692 101721692 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101721709 101721709 + Missense_Mutation SNP T T A rs146200489 byfrequency TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101721709 101721709 + Missense_Mutation SNP T T A rs146200489 byfrequency TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101721933 101721933 + Frame_Shift_Del DEL T T - rs112966887 unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101721933 101721933 + Frame_Shift_Del DEL T T - rs112966887 unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101725327 101725327 + Silent SNP T T C rs62513927 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101725374 101725374 + Missense_Mutation SNP T T C rs72681440 bycluster TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101727792 101727792 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101727792 101727792 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101730036 101730037 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101730036 101730037 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101730036 101730037 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC1 26986 hgsc.bcm.edu 37 8 101730043 101730043 + Missense_Mutation SNP G G C rs113614781 unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1 26986 hgsc.bcm.edu 37 8 101730043 101730043 + Missense_Mutation SNP G G C rs113614781 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1L 80336 broad.mit.edu 37 20 43564119 43564119 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPC1L 80336 hgsc.bcm.edu 37 20 43541488 43541488 + Silent SNP T T C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1L 80336 hgsc.bcm.edu;ucsc.edu 37 20 43559156 43559156 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC1P2 728773 broad.mit.edu 37 2 147345348 147345348 + 5'UTR SNP G A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPC1P2 728773 broad.mit.edu 37 2 147346046 147346046 + Missense_Mutation SNP C A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPC1P2 728773 broad.mit.edu 37 2 147346243 147346243 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPC1P2 728773 broad.mit.edu 37 2 147346720 147346720 + 3'UTR SNP C A A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPC3 5042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25670501 25670501 + Silent SNP G G A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25670549 25670549 + Silent SNP C C G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25670664 25670664 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 hgsc.bcm.edu 37 13 25670877 25670877 + Missense_Mutation SNP G G A rs112107735 unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25670907 25670907 + Missense_Mutation SNP C C A rs76264750 bycluster;byfrequency TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25670907 25670907 + Missense_Mutation SNP C C A rs76264750 bycluster;byfrequency TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25671206 25671206 + Silent SNP A A G rs76614854 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 hgsc.bcm.edu 37 13 25671369 25671369 + Nonsense_Mutation SNP G G T rs76804900 bycluster;byfrequency TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25671369 25671369 + Nonsense_Mutation SNP G G T rs76804900 bycluster;byfrequency TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25671742 25671742 + Missense_Mutation SNP G G A rs140135080 byfrequency TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 hgsc.bcm.edu 37 13 25671755 25671755 + Silent SNP G G A rs116223079 byfrequency TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25671759 25671759 + Missense_Mutation SNP C C T rs115121649 byfrequency TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu 37 13 25671786 25671786 + Missense_Mutation SNP G G A rs113301206 bycluster;byfrequency TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 hgsc.bcm.edu;ucsc.edu 37 13 25670499 25670499 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC3 5042 hgsc.bcm.edu;ucsc.edu 37 13 25670868 25670868 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC3 5042 hgsc.bcm.edu;ucsc.edu 37 13 25670873 25670873 + Silent SNP A A G rs77142265 unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPC5 140886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 90691350 90691350 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPC5 140886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 90691460 90691460 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PABPN1 8106 broad.mit.edu 37 14 23790967 23790969 + In_Frame_Del DEL GAG - - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPN1 8106 broad.mit.edu 37 14 23794554 23794554 + 3'UTR SNP G A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPN1 8106 broad.mit.edu 37 14 23794554 23794554 + 3'UTR SNP G A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PABPN1 8106 hgsc.bcm.edu;ucsc.edu 37 14 23793167 23793167 + Splice_Region SNP T T C novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PABPN1L 390748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88931430 88931430 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PACRG 135138 broad.mit.edu 37 6 163149205 163149205 + 5'UTR SNP A C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PACS1 55690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65983684 65983684 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PACS1 55690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65988247 65988247 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PACS2 23241 broad.mit.edu 37 14 105861116 105861116 + 3'UTR DEL A - - novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PACS2 23241 broad.mit.edu 37 14 105862722 105862722 + 3'UTR DEL C - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PACS2 23241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105843253 105843253 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PACS2 23241 broad.mit.edu;ucsc.edu 37 14 105843135 105843135 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PACS2 23241 hgsc.bcm.edu 37 14 105850749 105850749 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PACSIN1 29993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34499375 34499375 + Splice_Site SNP A A C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PACSIN2 11252 broad.mit.edu;hgsc.bcm.edu 37 22 43287181 43287181 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PADI2 11240 hgsc.bcm.edu;ucsc.edu 37 1 17396596 17396596 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PADI3 51702 broad.mit.edu;ucsc.edu 37 1 17609393 17609393 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PADI6 353238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17727910 17727910 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PADI6 353238 broad.mit.edu;ucsc.edu 37 1 17720899 17720899 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PADI6 353238 hgsc.bcm.edu 37 1 17699723 17699723 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PADI6 353238 hgsc.bcm.edu;ucsc.edu 37 1 17708507 17708507 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID PAF1 54623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39880356 39880356 + Silent SNP A A G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAF1 54623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39880362 39880362 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAF1 54623 hgsc.bcm.edu;ucsc.edu 37 19 39876968 39876968 + Missense_Mutation SNP C C T rs145620122 unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAF1 54623 hgsc.bcm.edu;ucsc.edu 37 19 39880205 39880205 + Intron SNP C C A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAF1 54623 hgsc.bcm.edu;ucsc.edu 37 19 39880893 39880893 + Intron SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAFAH1B1 5048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2570313 2570313 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAFAH1B1 5048 hgsc.bcm.edu 37 17 2577360 2577360 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAFAH2 5051 broad.mit.edu;hgsc.bcm.edu 37 1 26288568 26288568 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAGE1 8712 hgsc.bcm.edu 37 X 49454063 49454063 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAGE1 8712 hgsc.bcm.edu 37 X 49459389 49459389 + 5'UTR SNP G G C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAGE3 139793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55286975 55286975 + RNA SNP G G C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAGE4 9506 broad.mit.edu;ucsc.edu 37 X 49598473 49598473 + 3'UTR SNP A C C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAGE5 90737 broad.mit.edu 37 X 55247032 55247032 + 5'UTR SNP G C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAH 5053 broad.mit.edu 37 12 103248608 103248608 + Intron DEL A - - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAH 5053 broad.mit.edu 37 12 103248748 103248749 + Intron INS - A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAH 5053 broad.mit.edu 37 12 103311031 103311031 + 5'UTR SNP G A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAH 5053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 103240687 103240687 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAH 5053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 103306603 103306603 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAH 5053 hgsc.bcm.edu;ucsc.edu 37 12 103246684 103246684 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAH 5053 hgsc.bcm.edu;ucsc.edu 37 12 103246688 103246688 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAIP1 10605 broad.mit.edu;hgsc.bcm.edu 37 5 43543190 43543190 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAIP1 10605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43555944 43555944 + Silent SNP A A T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAIP1 10605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43555964 43555964 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAIP2 51247 broad.mit.edu;ucsc.edu 37 5 138699475 138699475 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAIP2 51247 hgsc.bcm.edu 37 5 138699539 138699539 + Silent SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAK1 5058 hgsc.bcm.edu 37 11 77103527 77103528 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAK3 5063 hgsc.bcm.edu 37 X 110406199 110406199 + Silent SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAK3 5063 hgsc.bcm.edu;ucsc.edu 37 X 110366370 110366370 + Silent SNP T T C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAK4 10298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39668357 39668357 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAK4 10298 broad.mit.edu;ucsc.edu 37 19 39664492 39664492 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAK6 56924 hgsc.bcm.edu 37 15 40568129 40568129 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAK6 56924 hgsc.bcm.edu;ucsc.edu 37 15 40564426 40564426 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAK6 56924 hgsc.bcm.edu;ucsc.edu 37 15 40564552 40564552 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAK6 56924 hgsc.bcm.edu;ucsc.edu 37 15 40568170 40568170 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAK7 57144 broad.mit.edu;hgsc.bcm.edu 37 20 9520102 9520102 + 3'UTR SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAK7 57144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 9520140 9520140 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PALB2 79728 hgsc.bcm.edu 37 16 23647298 23647298 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PALB2 79728 hgsc.bcm.edu;ucsc.edu 37 16 23634440 23634440 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PALB2 79728 hgsc.bcm.edu;ucsc.edu 37 16 23647169 23647169 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PALB2 79728 hgsc.bcm.edu;ucsc.edu 37 16 23647615 23647615 + Silent SNP G G T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PALLD 23022 broad.mit.edu 37 4 169433483 169433483 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PALLD 23022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 169633073 169633073 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PALLD 23022 hgsc.bcm.edu 37 4 169842820 169842820 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PALLD 23022 hgsc.bcm.edu 37 4 169842820 169842820 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PALM2 114299 broad.mit.edu 37 9 112705833 112705833 + 3'UTR SNP C G G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PALM2 114299 broad.mit.edu 37 9 112705834 112705834 + 3'UTR SNP T A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PALM2-AKAP2 445815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 112918733 112918733 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PALM2-AKAP2 445815 hgsc.bcm.edu 37 9 112900341 112900342 + In_Frame_Ins INS - - GAAGCT novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PALM2-AKAP2 445815 hgsc.bcm.edu;ucsc.edu 37 9 112900341 112900342 + In_Frame_Ins INS - - GAAGCT novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PALM3 342979 broad.mit.edu;ucsc.edu 37 19 14165245 14165245 + Silent SNP C T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PALMD 54873 broad.mit.edu;ucsc.edu 37 1 100155420 100155420 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAM 5066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 102326008 102326008 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAN2 9924 broad.mit.edu;ucsc.edu 37 12 56720186 56720186 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAN2 9924 hgsc.bcm.edu 37 12 56720445 56720445 + Silent SNP T T C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAN3 255967 broad.mit.edu;hgsc.bcm.edu 37 13 28750663 28750663 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAN3 255967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28844883 28844883 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK1 53354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91344174 91344174 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK1 53354 hgsc.bcm.edu 37 10 91348469 91348469 + Silent SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PANK1 53354 hgsc.bcm.edu;ucsc.edu 37 10 91348527 91348530 + Frame_Shift_Del DEL TCTA TCTA - novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 TCTA TCTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK1 53354 hgsc.bcm.edu;ucsc.edu 37 10 91403423 91403423 + Intron SNP G G A rs189044091 by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK2 80025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3897581 3897581 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK2 80025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3899360 3899360 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK2 80025 hgsc.bcm.edu;ucsc.edu 37 20 3891254 3891254 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PANK3 79646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 167993043 167993044 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PANK4 55229 hgsc.bcm.edu;ucsc.edu 37 1 2443118 2443118 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAPD4 167153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78936786 78936786 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPD5 64282 broad.mit.edu 37 16 50263408 50263409 + 3'UTR INS - A A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPD5 64282 broad.mit.edu 37 16 50263428 50263428 + 3'UTR DEL A - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPD5 64282 broad.mit.edu 37 16 50263428 50263428 + 3'UTR DEL A - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPD5 64282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50257298 50257298 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPD5 64282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50261849 50261849 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPD7 11044 broad.mit.edu 37 5 6756454 6756454 + 3'UTR DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPD7 11044 hgsc.bcm.edu;ucsc.edu 37 5 6749688 6749688 + Silent SNP C C A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAPL 390928 broad.mit.edu 37 19 39591391 39591391 + Silent SNP T G G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPL 390928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39597629 39597629 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPLN 89932 broad.mit.edu 37 14 73721593 73721593 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPOLA 10914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 97009231 97009231 + Splice_Site SNP G G A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLA 10914 broad.mit.edu;ucsc.edu 37 14 97022676 97022676 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPOLA 10914 hgsc.bcm.edu;ucsc.edu 37 14 96994365 96994365 + Intron SNP C C G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLA 10914 hgsc.bcm.edu;ucsc.edu 37 14 97010493 97010493 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAPOLB 56903 broad.mit.edu 37 7 4901465 4901466 + 5'UTR INS - CACGTCCCCCACCACCGCGACCTT CACGTCCCCCACCACCGCGACCTT novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPOLB 56903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4899654 4899654 + Silent SNP G G A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLB 56903 hgsc.bcm.edu 37 7 4901302 4901302 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAPOLG 64895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61019416 61019416 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLG 64895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61020826 61020826 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLG 64895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61021866 61021866 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLG 64895 broad.mit.edu;ucsc.edu 37 2 60987314 60987314 + Silent SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPOLG 64895 hgsc.bcm.edu 37 2 60997573 60997573 + Intron SNP A A G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPOLG 64895 hgsc.bcm.edu;ucsc.edu 37 2 61024285 61024285 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAPPA2 60676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176640128 176640128 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPPA2 60676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176659299 176659299 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PAPPA2 60676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176738772 176738772 + Silent SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PAPPA2 60676 hgsc.bcm.edu;ucsc.edu 37 1 176525830 176525830 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID PAPPA2 60676 hgsc.bcm.edu;ucsc.edu 37 1 176740168 176740168 + Silent SNP T T C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID PAPPA 5069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 118982390 118982390 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPSS1 9061 broad.mit.edu 37 4 108641361 108641361 + 5'UTR SNP G A A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPSS1 9061 broad.mit.edu 37 4 108641417 108641417 + 5'UTR SNP G A A novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPSS1 9061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 108574727 108574727 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPSS1 9061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 108608293 108608293 + Nonsense_Mutation SNP A A C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPSS1 9061 hgsc.bcm.edu;ucsc.edu 37 4 108578089 108578089 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAPSS2 9060 broad.mit.edu 37 10 89419638 89419639 + 5'UTR INS - GCT GCT rs3217087 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPSS2 9060 broad.mit.edu 37 10 89419638 89419639 + 5'UTR INS - GCT GCT rs3217087 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAPSS2 9060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 89473886 89473886 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAPSS2 9060 hgsc.bcm.edu 37 10 89503130 89503130 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAQR3 152559 hgsc.bcm.edu 37 4 79847693 79847693 + Silent SNP A A T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAQR4 124222 broad.mit.edu 37 16 3021699 3021699 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAQR5 54852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 69672243 69672243 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAQR8 85315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52268836 52268836 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAQR9 344838 hgsc.bcm.edu 37 3 142681458 142681458 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAR4 347745 broad.mit.edu;hgsc.bcm.edu 37 15 25456944 25456944 + RNA SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARD3 56288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 34626340 34626340 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARD3 56288 hgsc.bcm.edu;ucsc.edu 37 10 34671492 34671492 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARD6A 50855 hgsc.bcm.edu 37 16 67695546 67695547 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARD6A 50855 hgsc.bcm.edu 37 16 67695546 67695547 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARD6B 84612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49366295 49366295 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PARD6B 84612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49366663 49366664 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 AA AA AA - AA AA Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PARD6B 84612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49367001 49367001 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PARD6B 84612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49367004 49367004 + Silent SNP T T C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PARK2 5071 broad.mit.edu 37 6 161771036 161771037 + 3'UTR DEL GT - - novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARK2 5071 broad.mit.edu;ucsc.edu 37 6 161781136 161781136 + Silent SNP T C C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARM1 25849 broad.mit.edu;hgsc.bcm.edu 37 4 75971507 75971507 + 3'UTR SNP G G T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARM1 25849 broad.mit.edu 37 4 75972628 75972628 + 3'UTR DEL C - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARN 5073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14711480 14711480 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARN 5073 hgsc.bcm.edu;ucsc.edu 37 16 14674812 14674812 + Intron SNP A A G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARN 5073 hgsc.bcm.edu;ucsc.edu 37 16 14721119 14721119 + Splice_Region SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP10 84875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145059205 145059205 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP10 84875 hgsc.bcm.edu 37 8 145057868 145057868 + Missense_Mutation SNP A A G rs11544989 bycluster;byfrequency;by1000genomes TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP1 142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226551746 226551746 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP1 142 broad.mit.edu;ucsc.edu 37 1 226561930 226561930 + Silent SNP A G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP1 142 broad.mit.edu;ucsc.edu 37 1 226564845 226564845 + Silent SNP G C C novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP1 142 hgsc.bcm.edu 37 1 226566974 226566974 + Silent SNP T T A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP1 142 hgsc.bcm.edu 37 1 226566974 226566974 + Silent SNP T T A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP1 142 hgsc.bcm.edu;ucsc.edu 37 1 226555205 226555205 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP11 57097 broad.mit.edu 37 12 3921218 3921218 + 3'UTR SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP11 57097 broad.mit.edu 37 12 3921218 3921218 + 3'UTR SNP G A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP11 57097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 3939160 3939160 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP11 57097 hgsc.bcm.edu;ucsc.edu 37 12 3921406 3921406 + Silent SNP T T C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP11 57097 hgsc.bcm.edu;ucsc.edu 37 12 3931245 3931245 + Intron SNP T T C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP12 64761 broad.mit.edu 37 7 139724293 139724293 + 3'UTR DEL A - - novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP12 64761 broad.mit.edu 37 7 139741631 139741631 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP12 64761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139724549 139724549 + Silent SNP G G C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP12 64761 broad.mit.edu;ucsc.edu 37 7 139754561 139754561 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP14 54625 broad.mit.edu 37 3 122447574 122447574 + 3'UTR SNP A C C rs3732832 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP14 54625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122418640 122418640 + Silent SNP A A T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP14 54625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122433220 122433220 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP14 54625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122437546 122437546 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP14 54625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122447427 122447427 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP15 165631 hgsc.bcm.edu;ucsc.edu 37 3 122324838 122324838 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP16 54956 broad.mit.edu;ucsc.edu 37 15 65551800 65551800 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP4 143 broad.mit.edu 37 13 25026513 25026513 + Intron SNP T C C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP4 143 broad.mit.edu;hgsc.bcm.edu 37 13 25008976 25008976 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP4 143 broad.mit.edu;ucsc.edu 37 13 25075850 25075850 + Silent SNP T C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARP4 143 hgsc.bcm.edu 37 13 25016008 25016008 + Silent SNP C C T rs80008060 unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP4 143 hgsc.bcm.edu 37 13 25044068 25044068 + Silent SNP G G A rs72627334 unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP4 143 hgsc.bcm.edu;ucsc.edu 37 13 25020814 25020814 + Intron SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP4 143 hgsc.bcm.edu;ucsc.edu 37 13 25021323 25021323 + Missense_Mutation SNP A A G rs73172125 bycluster TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP4 143 hgsc.bcm.edu;ucsc.edu 37 13 25034117 25034117 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP4 143 hgsc.bcm.edu;ucsc.edu 37 13 25074499 25074499 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP6 56965 broad.mit.edu;hgsc.bcm.edu 37 15 72542434 72542434 + Splice_Site SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP6 56965 hgsc.bcm.edu;ucsc.edu 37 15 72552021 72552021 + Intron SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP8 79668 hgsc.bcm.edu 37 5 50093025 50093025 + Silent SNP T T G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP8 79668 hgsc.bcm.edu;ucsc.edu 37 5 50093052 50093052 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP8 79668 hgsc.bcm.edu;ucsc.edu 37 5 50125784 50125784 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARP9 83666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122247559 122247559 + Silent SNP G G C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARP9 83666 hgsc.bcm.edu 37 3 122277192 122277192 + Silent SNP G G T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PARS2 25973 broad.mit.edu 37 1 55223346 55223346 + 3'UTR SNP A T T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARS2 25973 broad.mit.edu 37 1 55224781 55224781 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PARS2 25973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55224207 55224207 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARVA 55742 broad.mit.edu;hgsc.bcm.edu 37 11 12518075 12518075 + Silent SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PARVG 64098 hgsc.bcm.edu;ucsc.edu 37 22 44592248 44592248 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PASD1 139135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 150842545 150842545 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PASK 23178 broad.mit.edu 37 2 242072498 242072498 + Intron SNP C T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PASK 23178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242063382 242063382 + Silent SNP G G C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PASK 23178 hgsc.bcm.edu 37 2 242047620 242047620 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PASK 23178 hgsc.bcm.edu 37 2 242082263 242082263 + Missense_Mutation SNP G G A rs144572631 unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PASK 23178 hgsc.bcm.edu 37 2 242082263 242082263 + Missense_Mutation SNP G G A rs144572631 unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PATE3 100169851 hgsc.bcm.edu;ucsc.edu 37 11 125660387 125660387 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PATL1 219988 broad.mit.edu 37 11 59436377 59436378 + 5'UTR INS - G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PATL2 197135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44964245 44964245 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PATZ1 23598 hgsc.bcm.edu 37 22 31741483 31741483 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAX1 5075 broad.mit.edu 37 20 21690005 21690005 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX1 5075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21689243 21689243 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAX3 5077 broad.mit.edu 37 2 223065882 223065882 + 3'UTR SNP G T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX3 5077 broad.mit.edu;hgsc.bcm.edu 37 2 223066808 223066808 + Silent SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAX3 5077 hgsc.bcm.edu;ucsc.edu 37 2 223066781 223066781 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PAX4 5078 broad.mit.edu 37 7 127255616 127255616 + 5'UTR SNP A C C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX4 5078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127252031 127252031 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAX4 5078 hgsc.bcm.edu;ucsc.edu 37 7 127252007 127252007 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAX6 5080 broad.mit.edu;hgsc.bcm.edu 37 11 31816305 31816305 + Silent SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PAX7 5081 broad.mit.edu 37 1 18957988 18957988 + 5'UTR DEL A - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX8 7849 broad.mit.edu 37 2 113999705 113999705 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX8 7849 broad.mit.edu 37 2 114013024 114013024 + Intron DEL A - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX8 7849 broad.mit.edu 37 2 114013024 114013024 + Intron DEL A - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX9 5083 broad.mit.edu 37 14 37145745 37145745 + 3'UTR DEL C - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PAX9 5083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 37132609 37132609 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBK 55872 broad.mit.edu 37 8 27667793 27667793 + 3'UTR SNP C T T rs1052873 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBLD 64081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70056040 70056040 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu 37 3 52620362 52620362 + Intron SNP T C C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PBRM1 55193 broad.mit.edu 37 3 52649373 52649373 + Nonsense_Mutation SNP T A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx PBRM1 55193 broad.mit.edu 37 3 52678806 52678806 + Splice_Site SNP C T T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52595822 52595822 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52610715 52610715 + Splice_Site SNP C C G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52651293 52651293 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52663052 52663052 + Splice_Site SNP C C A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52692333 52692333 + Splice_Site SNP T T A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52582140 52582140 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52584626 52584626 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52584643 52584643 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52584765 52584766 + Frame_Shift_Ins INS - - TT novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 - - - TT - - Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52588748 52588748 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52588818 52588818 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52588877 52588877 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52595787 52595787 + Nonsense_Mutation SNP A A C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52597379 52597379 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52598158 52598158 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52598242 52598242 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610584 52610584 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610585 52610585 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610643 52610643 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610659 52610659 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610695 52610695 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620517 52620518 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 - - - C - - Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620525 52620525 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620529 52620550 + Frame_Shift_Del DEL ACAGAGGCCACGCGAACCACAG ACAGAGGCCACGCGAACCACAG - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 ACAGAGGCCACGCGAACCACAG ACAGAGGCCACGCGAACCACAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620674 52620674 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620685 52620685 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621433 52621434 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 CT CT CT - CT CT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621446 52621446 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621464 52621464 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621512 52621515 + Frame_Shift_Del DEL ACAA ACAA - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 ACAA ACAA ACAA - ACAA ACAA Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621519 52621519 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52623110 52623110 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52623121 52623122 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 AT AT AT - AT AT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52623124 52623124 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T T - T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52637689 52637689 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52637711 52637711 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643348 52643348 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643348 52643348 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643360 52643360 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643401 52643401 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T T - T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643533 52643533 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643561 52643561 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643654 52643654 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C C - C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643743 52643743 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643768 52643768 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643770 52643770 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643828 52643828 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643898 52643898 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649377 52649377 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T T - T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649414 52649414 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649438 52649438 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649440 52649440 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649451 52649451 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651339 52651339 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651339 52651339 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651357 52651357 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651382 52651383 + Frame_Shift_Del INS - - A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651419 52651419 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651513 52651513 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52661325 52661325 + Nonsense_Mutation SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52661377 52661377 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52662911 52662911 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T T - T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52662912 52662912 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52662984 52662984 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52663035 52663035 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52668655 52668655 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52668807 52668807 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52668817 52668817 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52677265 52677265 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52682418 52682418 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52682446 52682446 + Nonsense_Mutation SNP T T A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52682459 52682459 + Splice_Site SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52685756 52685756 + Splice_Site SNP A A G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52692236 52692236 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52696199 52696199 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52696199 52696199 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52702514 52702514 + Silent SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52702612 52702612 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52702662 52702662 + Splice_Site SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52712580 52712580 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52597493 52597493 + Nonsense_Mutation SNP G A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52598080 52598080 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52637738 52637738 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52637740 52637740 + Nonsense_Mutation SNP G T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52678783 52678784 + Frame_Shift_Ins INS - T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52692235 52692235 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52696148 52696148 + Splice_Site SNP C A A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52712615 52712615 + Splice_Site SNP T C C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBRM1 55193 hgsc.bcm.edu 37 3 52598178 52598179 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 - - - A - - Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu 37 3 52610639 52610640 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu 37 3 52623117 52623117 + Silent SNP G G C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu 37 3 52623267 52623267 + Silent SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu 37 3 52649437 52649437 + Silent SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu 37 3 52651528 52651528 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu 37 3 52668676 52668676 + Nonsense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu 37 3 52676063 52676063 + Splice_Site SNP T T A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu 37 3 52678784 52678784 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu 37 3 52692279 52692280 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture PGM SOLID PBRM1 55193 hgsc.bcm.edu 37 3 52713700 52713700 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52584502 52584502 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52588839 52588839 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52595829 52595829 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C C - C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52595863 52595864 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 TC TC TC - TC TC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52598097 52598102 + In_Frame_Del DEL TAGCAG TAGCAG - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 TAGCAG TAGCAG TAGCAG - TAGCAG TAGCAG Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52598238 52598238 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C C - C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52610695 52610695 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52613123 52613123 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A A - A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52620646 52620646 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52620674 52620674 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52621464 52621464 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52621464 52621464 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52623262 52623262 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T T - T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52637555 52637555 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52637692 52637694 + In_Frame_Del DEL ATT ATT - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 ATT ATT ATT - ATT ATT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52643328 52643328 + Splice_Site SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52643368 52643389 + Frame_Shift_Del DEL TGCTCTTGAAATAAATCAAGCC TGCTCTTGAAATAAATCAAGCC - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 TGCTCTTGAAATAAATCAAGCC TGCTCTTGAAATAAATCAAGCC TGCTCTTGAAATAAATCAAGCC - TGCTCTTGAAATAAATCAAGCC TGCTCTTGAAATAAATCAAGCC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52643504 52643504 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52651292 52651292 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52651349 52651353 + Frame_Shift_Del DEL CACCA CACCA - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 CACCA CACCA CACCA - CACCA CACCA Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52651383 52651383 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52661288 52661288 + Splice_Site SNP C C A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52661388 52661388 + Splice_Site SNP T T A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52678735 52678735 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52682446 52682462 + Frame_Shift_Del DEL TGTAGCTTCCATTCTAC TGTAGCTTCCATTCTAC - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 TGTAGCTTCCATTCTAC TGTAGCTTCCATTCTAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52682447 52682447 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52692298 52692298 + Nonsense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52696252 52696253 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 - - - C - - Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52696277 52696278 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52702660 52702660 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52712580 52712580 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52713608 52713614 + Frame_Shift_Del DEL ATTGGAA ATTGGAA - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 ATTGGAA ATTGGAA ATTGGAA - ATTGGAA ATTGGAA Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PBX1 5087 broad.mit.edu 37 1 164528905 164528905 + 5'UTR DEL T - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBX2 5089 broad.mit.edu 37 6 32155509 32155509 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBX2 5089 broad.mit.edu 37 6 32156280 32156280 + Silent SNP G T T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBX2 5089 broad.mit.edu 37 6 32156550 32156550 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBX2 5089 broad.mit.edu 37 6 32157697 32157697 + 5'UTR DEL G - - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBX2 5089 broad.mit.edu 37 6 32157697 32157697 + 5'UTR DEL G - - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PBX2 5089 hgsc.bcm.edu 37 6 32155054 32155054 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBX3 5090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 128724472 128724472 + Silent SNP C C T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBXIP1 57326 broad.mit.edu;hgsc.bcm.edu 37 1 154920626 154920626 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PBXIP1 57326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154918597 154918597 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PC 5091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66616396 66616396 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PC 5091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66619326 66619326 + Silent SNP G G A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCBD2 84105 broad.mit.edu 37 5 134297762 134297763 + 3'UTR INS - TG TG rs58911694 unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCBD2 84105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134294744 134294744 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCBP1 5093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70315104 70315104 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCBP2 5094 broad.mit.edu;hgsc.bcm.edu 37 12 53853119 53853119 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCBP2 5094 hgsc.bcm.edu;ucsc.edu 37 12 53848638 53848638 + Silent SNP A A T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCBP2 5094 hgsc.bcm.edu;ucsc.edu 37 12 53865471 53865471 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCCA 5095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100925589 100925589 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCCB 5096 broad.mit.edu;hgsc.bcm.edu 37 3 136045815 136045815 + Intron SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCCB 5096 broad.mit.edu;hgsc.bcm.edu 37 3 136046479 136046479 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCCB 5096 hgsc.bcm.edu 37 3 136012687 136012687 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH10 57575 broad.mit.edu 37 4 134070665 134070665 + 5'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134071474 134071474 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134071487 134071487 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134071517 134071517 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134071550 134071550 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134072133 134072133 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134073481 134073481 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH10 57575 hgsc.bcm.edu 37 4 134071622 134071622 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH11X 27328 broad.mit.edu;hgsc.bcm.edu 37 X 91873325 91873325 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH11X 27328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 91137907 91137907 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH11X 27328 hgsc.bcm.edu;ucsc.edu 37 X 91133589 91133589 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH11Y 83259 broad.mit.edu 37 Y 4966255 4966255 + Splice_Site SNP G T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH12 51294 broad.mit.edu 37 5 141337114 141337114 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH12 51294 broad.mit.edu 37 5 141337480 141337480 + 5'UTR SNP C T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH12 51294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141337417 141337417 + 5'UTR SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH1 5097 broad.mit.edu;hgsc.bcm.edu 37 5 141243175 141243175 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH1 5097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141242928 141242928 + Nonsense_Mutation SNP T T A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH1 5097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141243421 141243421 + Silent SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH1 5097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141248528 141248528 + Nonsense_Mutation SNP G G T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH1 5097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141248529 141248529 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH1 5097 broad.mit.edu;ucsc.edu 37 5 141233715 141233715 + Silent SNP G A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH15 65217 broad.mit.edu 37 10 55944912 55944912 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55568846 55568846 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55587279 55587279 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55663098 55663098 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55663099 55663099 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55700700 55700700 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55755498 55755498 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55755499 55755499 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55779999 55779999 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 56077194 56077194 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH15 65217 hgsc.bcm.edu 37 10 55566692 55566692 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH15 65217 hgsc.bcm.edu 37 10 55582369 55582369 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH15 65217 hgsc.bcm.edu 37 10 55582369 55582369 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH15 65217 hgsc.bcm.edu 37 10 55849761 55849761 + Silent SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH15 65217 hgsc.bcm.edu 37 10 56367658 56367658 + Intron SNP T T C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH17 27253 hgsc.bcm.edu;ucsc.edu 37 13 58299308 58299308 + Silent SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH18 54510 broad.mit.edu 37 4 138453257 138453257 + 5'UTR SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH18 54510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 138450943 138450943 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH18 54510 hgsc.bcm.edu;ucsc.edu 37 4 138452585 138452585 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH19 57526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 99551562 99551562 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH19 57526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 99662750 99662750 + Silent SNP G G A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH19 57526 hgsc.bcm.edu;ucsc.edu 37 X 99551677 99551677 + Silent SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH20 64881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 61985497 61985497 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH20 64881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 61987113 61987113 + Silent SNP C C A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH20 64881 broad.mit.edu;ucsc.edu 37 13 61986058 61986058 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH20 64881 hgsc.bcm.edu 37 13 61987429 61987429 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH20 64881 hgsc.bcm.edu;ucsc.edu 37 13 61985426 61985426 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH20 64881 hgsc.bcm.edu;ucsc.edu 37 13 61986576 61986576 + Silent SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 30724623 30724623 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 30724917 30724917 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 30725280 30725280 + Nonsense_Mutation SNP A A T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 30725802 30725802 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 31144197 31144197 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 31144244 31144244 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH8 5100 broad.mit.edu 37 13 53422672 53422672 + 5'UTR SNP C T T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDH9 5101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 67205519 67205519 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH9 5101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 67800364 67800364 + Silent SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDH9 5101 broad.mit.edu;ucsc.edu 37 13 67801923 67801923 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA10 56139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140236094 140236094 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA10 56139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140236546 140236546 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA10 56139 broad.mit.edu;ucsc.edu 37 5 140236864 140236864 + Missense_Mutation SNP G T T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA11 56138 broad.mit.edu 37 5 140250599 140250599 + Silent SNP C T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA11 56138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140248769 140248769 + Silent SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA12 56137 broad.mit.edu 37 5 140255005 140255005 + 5'UTR SNP C T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA12 56137 broad.mit.edu 37 5 140256584 140256584 + Silent SNP G A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140255065 140255065 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140255597 140255597 + Silent SNP T T G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140255906 140255906 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140256882 140256882 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140257019 140257019 + Silent SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA13 56136 broad.mit.edu 37 5 140389805 140389805 + 3'UTR SNP C T T rs114341618 byfrequency;by1000genomes TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA13 56136 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140263639 140263639 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA1 56147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140390965 140390965 + 3'UTR SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA1 56147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140391226 140391226 + 3'UTR SNP A A C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA2 56146 broad.mit.edu;hgsc.bcm.edu 37 5 140176057 140176057 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA2 56146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140174870 140174870 + Silent SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA3 56145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140182765 140182765 + Silent SNP C C A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA5 56143 broad.mit.edu 37 5 140201665 140201665 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA5 56143 broad.mit.edu 37 5 140202962 140202962 + Silent SNP G A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHA5 56143 broad.mit.edu;hgsc.bcm.edu 37 5 140202644 140202644 + Silent SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA5 56143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140201426 140201426 + Silent SNP C C T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA5 56143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140202183 140202183 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA5 56143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140203675 140203675 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA5 56143 hgsc.bcm.edu 37 5 140202821 140202821 + Silent SNP C C G rs80008076 bycluster;byfrequency;by1000genomes TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA6 56142 broad.mit.edu;hgsc.bcm.edu 37 5 140209499 140209499 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA6 56142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140209828 140209828 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA6 56142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140209867 140209867 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA7 56141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140216218 140216218 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA8 56140 broad.mit.edu;hgsc.bcm.edu 37 5 140222015 140222015 + Missense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA8 56140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140221437 140221437 + Silent SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA9 9752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140229361 140229361 + Silent SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA9 9752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140230065 140230065 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHA9 9752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140230078 140230078 + Silent SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHAC2 56134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140347848 140347848 + Silent SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHAC2 56134 broad.mit.edu;ucsc.edu 37 5 140346845 140346845 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB10 56126 broad.mit.edu 37 5 140574170 140574175 + In_Frame_Del DEL AGGCCG - - rs140613424 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 AGGCCG AGGCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB10 56126 broad.mit.edu;hgsc.bcm.edu 37 5 140573503 140573503 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB10 56126 broad.mit.edu;hgsc.bcm.edu 37 5 140573506 140573506 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB11 56125 broad.mit.edu 37 5 140581875 140581875 + 3'UTR DEL T - - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB11 56125 broad.mit.edu 37 5 140581875 140581875 + 3'UTR DEL T - - novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB11 56125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140579545 140579545 + Silent SNP G G C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB11 56125 hgsc.bcm.edu 37 5 140579345 140579345 + 5'Promoter SNP A A C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHB11 56125 hgsc.bcm.edu;ucsc.edu 37 5 140580255 140580255 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHB11 56125 hgsc.bcm.edu;ucsc.edu 37 5 140580390 140580391 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB11 56125 hgsc.bcm.edu;ucsc.edu 37 5 140580451 140580453 + In_Frame_Del DEL TAG TAG - novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 TAG TAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB11 56125 hgsc.bcm.edu;ucsc.edu 37 5 140580452 140580452 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHB1 29930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140431290 140431290 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB1 29930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140432180 140432180 + Silent SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB1 29930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140432455 140432455 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB13 56123 broad.mit.edu;hgsc.bcm.edu 37 5 140594137 140594137 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB13 56123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140594887 140594887 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB13 56123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140596070 140596070 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB14 56122 broad.mit.edu;hgsc.bcm.edu 37 5 140605198 140605198 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB14 56122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140604554 140604554 + Missense_Mutation SNP C C T rs150245283 bycluster;byfrequency;by1000genomes TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB15 56121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140625223 140625223 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB15 56121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140625765 140625765 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB16 57717 broad.mit.edu 37 5 140564017 140564017 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB16 57717 broad.mit.edu 37 5 140564230 140564230 + Missense_Mutation SNP C G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB16 57717 broad.mit.edu;hgsc.bcm.edu 37 5 140563511 140563511 + Silent SNP C C T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB2 56133 hgsc.bcm.edu 37 5 140476000 140476000 + Silent SNP G G A rs141231979 byfrequency;alternate_allele TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB3 56132 broad.mit.edu;hgsc.bcm.edu 37 5 140482637 140482637 + 3'UTR SNP A A G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB3 56132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140480794 140480794 + Silent SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB3 56132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140481311 140481311 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB3 56132 hgsc.bcm.edu 37 5 140481633 140481633 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB3 56132 hgsc.bcm.edu;ucsc.edu 37 5 140481267 140481267 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHB4 56131 hgsc.bcm.edu 37 5 140502934 140502934 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB5 26167 broad.mit.edu 37 5 140514900 140514900 + 5'UTR SNP T G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB5 26167 broad.mit.edu;hgsc.bcm.edu 37 5 140517263 140517263 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB6 56130 broad.mit.edu;hgsc.bcm.edu 37 5 140531176 140531176 + Silent SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB6 56130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140530050 140530050 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB6 56130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140532190 140532190 + Silent SNP C C A rs146937630 unknown;alternate_allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB6 56130 hgsc.bcm.edu;ucsc.edu 37 5 140529900 140529900 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140553926 140553926 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140553991 140553991 + Silent SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140553992 140553992 + Missense_Mutation SNP G G T rs146429251 byfrequency;alternate_allele TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140554161 140554161 + Missense_Mutation SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB7 56129 hgsc.bcm.edu 37 5 140553793 140553793 + Silent SNP T T C rs114684348 byfrequency TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHB7 56129 hgsc.bcm.edu 37 5 140553822 140553822 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHB8 56128 broad.mit.edu 37 5 140559035 140559035 + Missense_Mutation SNP G A A rs149925643 unknown;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB8 56128 broad.mit.edu;hgsc.bcm.edu 37 5 140559268 140559268 + Silent SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB8 56128 broad.mit.edu;hgsc.bcm.edu 37 5 140559547 140559547 + Silent SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB8 56128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140559876 140559876 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHB9 56127 broad.mit.edu 37 5 140568303 140568303 + Missense_Mutation SNP G A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHB9 56127 broad.mit.edu;hgsc.bcm.edu 37 5 140569080 140569080 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA10 56106 broad.mit.edu 37 5 140794506 140794506 + Silent SNP C T T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA10 56106 hgsc.bcm.edu 37 5 140795208 140795209 + Frame_Shift_Ins INS - - A rs113784532 unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA11 56105 broad.mit.edu;hgsc.bcm.edu 37 5 140802703 140802703 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA11 56105 hgsc.bcm.edu 37 5 140802854 140802856 + In_Frame_Del DEL CCT CCT - novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 CCT CCT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHGA12 26025 broad.mit.edu 37 5 140812776 140812776 + Intron DEL T - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA12 26025 hgsc.bcm.edu 37 5 140812569 140812570 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCDHGA12 26025 hgsc.bcm.edu 37 5 140812776 140812776 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA1 56114 broad.mit.edu;hgsc.bcm.edu 37 5 140712348 140712348 + Silent SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA1 56114 broad.mit.edu;hgsc.bcm.edu 37 5 140712520 140712520 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA1 56114 broad.mit.edu;ucsc.edu 37 5 140712672 140712672 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA2 56113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140718869 140718869 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA3 56112 broad.mit.edu 37 5 140725547 140725547 + Silent SNP C T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA3 56112 broad.mit.edu 37 5 140725628 140725628 + Silent SNP C G G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA3 56112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140724196 140724196 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA5 56110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140745027 140745027 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA5 56110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140745223 140745223 + Silent SNP A A G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA7 56108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140762931 140762931 + Silent SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA7 56108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140764005 140764005 + Silent SNP C C T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGA8 9708 broad.mit.edu 37 5 140774176 140774176 + Missense_Mutation SNP G T T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA8 9708 broad.mit.edu 37 5 140774176 140774176 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA8 9708 broad.mit.edu 37 5 140774176 140774176 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGA8 9708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140773214 140773214 + Silent SNP A A G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB1 56104 broad.mit.edu;ucsc.edu 37 5 140732064 140732064 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGB2 56103 hgsc.bcm.edu;ucsc.edu 37 5 140741742 140741742 + Silent SNP G G A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB3 56102 broad.mit.edu 37 5 140751901 140751901 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGB3 56102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140750550 140750550 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB3 56102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140750994 140750994 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB3 56102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140751808 140751808 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB4 8641 broad.mit.edu;hgsc.bcm.edu 37 5 140769724 140769724 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB4 8641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140768184 140768184 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB4 8641 hgsc.bcm.edu 37 5 140767492 140767497 + In_Frame_Del DEL TGCCAG TGCCAG - rs145222727 unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 TGCCAG TGCCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB4 8641 hgsc.bcm.edu 37 5 140767492 140767497 + In_Frame_Del DEL TGCCAG TGCCAG - rs145222727 unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 TGCCAG TGCCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB5 56101 broad.mit.edu;hgsc.bcm.edu 37 5 140778135 140778135 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB7 56099 broad.mit.edu 37 5 140797646 140797646 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGB7 56099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140798186 140798186 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB7 56099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140798209 140798209 + Silent SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGB7 56099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140798869 140798869 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGC4 56098 broad.mit.edu;hgsc.bcm.edu 37 5 140865503 140865503 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGC5 56097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140869478 140869478 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGC5 56097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140870296 140870296 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDHGC5 56097 broad.mit.edu;ucsc.edu 37 5 140869551 140869551 + Silent SNP T A A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDHGC5 56097 broad.mit.edu;ucsc.edu 37 5 140890569 140890569 + Silent SNP C T T rs143630962 unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCDP1 200373 broad.mit.edu;hgsc.bcm.edu 37 2 120362275 120362275 + 5'UTR SNP C C G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCDP1 200373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120388454 120388454 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCF11 51585 broad.mit.edu;hgsc.bcm.edu 37 11 82868704 82868704 + Intron SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCF11 51585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 82877718 82877718 + Silent SNP T T C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCF11 51585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 82877723 82877723 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCF11 51585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 82877725 82877725 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCF11 51585 broad.mit.edu;ucsc.edu 37 11 82878246 82878246 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCF11 51585 hgsc.bcm.edu;ucsc.edu 37 11 82877339 82877339 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCGF1 84759 broad.mit.edu 37 2 74732306 74732306 + Silent SNP C T T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCGF2 7703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36892363 36892363 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCGF2 7703 hgsc.bcm.edu 37 17 36895856 36895856 + Silent SNP C C T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCGF3 10336 broad.mit.edu 37 4 761103 761103 + 3'UTR DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCGF5 84333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93011143 93011144 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCGF6 84108 broad.mit.edu 37 10 105110747 105110747 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCID2 55795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 113854792 113854792 + Silent SNP A A G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCID2 55795 hgsc.bcm.edu;ucsc.edu 37 13 113854775 113854775 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCIF1 63935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44575022 44575022 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCIF1 63935 hgsc.bcm.edu 37 20 44571762 44571762 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCIF1 63935 hgsc.bcm.edu 37 20 44572023 44572023 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCK1 5105 broad.mit.edu 37 20 56140965 56140967 + 3'UTR DEL ATC - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 ATC ATC ATC - ATC ATC Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PCK1 5105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56138150 56138150 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PCK1 5105 broad.mit.edu;ucsc.edu 37 20 56138156 56138156 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx PCK1 5105 hgsc.bcm.edu 37 20 56136506 56136506 + Silent SNP C C T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM SOLID PCK1 5105 hgsc.bcm.edu;ucsc.edu 37 20 56138155 56138157 + In_Frame_Del DEL ATC ATC - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 ATC ATC ATC - ATC ATC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PCK1 5105 hgsc.bcm.edu;ucsc.edu 37 20 56140707 56140709 + In_Frame_Del DEL CAA CAA - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 CAA CAA CAA - CAA CAA Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PCK2 5106 broad.mit.edu;ucsc.edu 37 14 24568786 24568786 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCLO 27445 broad.mit.edu;hgsc.bcm.edu 37 7 82474757 82474757 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82430893 82430893 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82544733 82544733 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82545945 82545945 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82579567 82579567 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82580448 82580448 + Silent SNP C C T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82582155 82582155 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82582250 82582250 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82583288 82583288 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82583794 82583794 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82595299 82595299 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82595325 82595325 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82595361 82595361 + Missense_Mutation SNP A A G rs61995907 by1000genomes TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82785211 82785211 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 hgsc.bcm.edu 37 7 82474791 82474791 + Silent SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCLO 27445 hgsc.bcm.edu 37 7 82784434 82784463 + In_Frame_Del DEL TTTGTTGAGCCAGGCTGTTGAGATGGGGGC TTTGTTGAGCCAGGCTGTTGAGATGGGGGC - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 TTTGTTGAGCCAGGCTGTTGAGATGGGGGC TTTGTTGAGCCAGGCTGTTGAGATGGGGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCLO 27445 hgsc.bcm.edu;ucsc.edu 37 7 82581464 82581464 + Silent SNP C C A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCLO 27445 hgsc.bcm.edu;ucsc.edu 37 7 82585659 82585659 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCLO 27445 hgsc.bcm.edu;ucsc.edu 37 7 82595120 82595120 + Silent SNP T T C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCM1 5108 broad.mit.edu 37 8 17885372 17885372 + 3'UTR DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCM1 5108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17814231 17814231 + Nonsense_Mutation SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCM1 5108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17814232 17814232 + Missense_Mutation SNP A A T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCMT1 5110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150094281 150094281 + Silent SNP A A G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCMTD1 115294 broad.mit.edu 37 8 52732819 52732822 + 3'UTR DEL GAAA - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 GAAA GAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732831 52732834 + 3'UTR DEL TCTC - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 TCTC TCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732843 52732843 + 3'UTR SNP C T T rs116069210 unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732843 52732843 + 3'UTR SNP C T T rs116069210 unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732843 52732843 + 3'UTR SNP C T T rs116069210 unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732843 52732843 + 3'UTR SNP C T T rs116069210 unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732843 52732843 + 3'UTR SNP C T T rs116069210 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732871 52732871 + 3'UTR SNP T C C rs77261625 unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732871 52732871 + 3'UTR SNP T C C rs77261625 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732871 52732871 + 3'UTR SNP T C C rs77261625 unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732871 52732871 + 3'UTR SNP T C C rs77261625 unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732871 52732871 + 3'UTR SNP T C C rs77261625 unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu 37 8 52732893 52732894 + 3'UTR INS - C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCMTD1 115294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52733037 52733037 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCMTD1 115294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52746175 52746175 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCMTD1 115294 hgsc.bcm.edu 37 8 52733055 52733055 + Silent SNP C C T rs117334240 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCMTD1 115294 hgsc.bcm.edu;ucsc.edu 37 8 52773471 52773471 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCMTD1 115294 hgsc.bcm.edu;ucsc.edu 37 8 52773607 52773607 + Silent SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCMTD2 55251 hgsc.bcm.edu;ucsc.edu 37 20 62891425 62891425 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNA 5111 broad.mit.edu 37 20 5099100 5099100 + Intron SNP C G G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCNA 5111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 5099285 5099285 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNA 5111 hgsc.bcm.edu;ucsc.edu 37 20 5098199 5098199 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNA 5111 hgsc.bcm.edu;ucsc.edu 37 20 5098236 5098236 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNP 57092 broad.mit.edu 37 3 101311704 101311704 + 3'UTR SNP T C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCNT 5116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47769001 47769001 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47783470 47783470 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47841950 47841950 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47850087 47850087 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 hgsc.bcm.edu 37 21 47754449 47754449 + Missense_Mutation SNP G G A rs59183158 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 hgsc.bcm.edu 37 21 47754449 47754449 + Missense_Mutation SNP G G A rs59183158 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 hgsc.bcm.edu 37 21 47754563 47754563 + Missense_Mutation SNP A A G rs61735822 bycluster;byfrequency;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 hgsc.bcm.edu 37 21 47818172 47818172 + Intron SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNT 5116 hgsc.bcm.edu 37 21 47831209 47831209 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNT 5116 hgsc.bcm.edu 37 21 47832830 47832830 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNT 5116 hgsc.bcm.edu;ucsc.edu 37 21 47832897 47832897 + Silent SNP C C T rs144445891 unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNX 22990 broad.mit.edu 37 14 71478315 71478315 + Intron SNP T C C novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71444679 71444679 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71462626 71462626 + Silent SNP T T C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71479737 71479737 + Silent SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71514655 71514655 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71524405 71524405 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71543031 71543031 + Silent SNP A A G rs144508419 bycluster;byfrequency;by1000genomes TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71571970 71571970 + Silent SNP A A T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNX 22990 broad.mit.edu;ucsc.edu 37 14 71462632 71462632 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCNX 22990 hgsc.bcm.edu;ucsc.edu 37 14 71443721 71443721 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNX 22990 hgsc.bcm.edu;ucsc.edu 37 14 71444859 71444859 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNXL2 80003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 233150461 233150461 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL2 80003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 233270864 233270864 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL2 80003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 233296143 233296143 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL2 80003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 233386509 233386509 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL3 399909 broad.mit.edu;hgsc.bcm.edu 37 11 65392741 65392741 + Missense_Mutation SNP A A T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL3 399909 broad.mit.edu;hgsc.bcm.edu 37 11 65402821 65402821 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL3 399909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65386188 65386188 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCNXL3 399909 broad.mit.edu;ucsc.edu 37 11 65391403 65391403 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCNXL3 399909 hgsc.bcm.edu 37 11 65384727 65384727 + Silent SNP C C T rs12790427 bycluster;byfrequency;by1000genomes TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCNXL3 399909 hgsc.bcm.edu;ucsc.edu 37 11 65396339 65396339 + Silent SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCOLCE2 26577 hgsc.bcm.edu 37 3 142561763 142561763 + Intron SNP C C T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCP4 5121 hgsc.bcm.edu;ucsc.edu 37 21 41239469 41239469 + Intron SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCP4L1 654790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161254256 161254256 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK1 5122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 95728885 95728885 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK2 5126 broad.mit.edu 37 20 17444611 17444612 + Intron DEL CA - - rs143808073 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK2 5126 broad.mit.edu;hgsc.bcm.edu 37 20 17417410 17417410 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK2 5126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 17434533 17434533 + Silent SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK2 5126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 17462428 17462428 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK2 5126 hgsc.bcm.edu 37 20 17437054 17437054 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCSK4 54760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1482902 1482902 + Silent SNP G G A rs143738061 byfrequency;alternate_allele TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK5 5125 broad.mit.edu 37 9 78790187 78790187 + Intron SNP G C C rs10118321 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790192 78790192 + Intron SNP C G G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790192 78790192 + Intron SNP C G G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790192 78790192 + Intron SNP C G G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790192 78790192 + Intron SNP C G G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790192 78790192 + Intron SNP C G G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790207 78790208 + Intron INS - GAATA GAATA rs71372053 unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790207 78790208 + Intron INS - GAATA GAATA rs71372053 unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790226 78790227 + Intron INS - AGAAC AGAAC novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu 37 9 78790226 78790227 + Intron INS - AGAAC AGAAC novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK5 5125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 78601100 78601100 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK5 5125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 78774010 78774010 + Silent SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK5 5125 hgsc.bcm.edu 37 9 78655277 78655277 + Intron SNP C C G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK5 5125 hgsc.bcm.edu 37 9 78655285 78655285 + Intron SNP C C G rs12238566 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK5 5125 hgsc.bcm.edu 37 9 78655313 78655313 + Intron SNP C C G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK6 5046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101933619 101933619 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK6 5046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101938736 101938737 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK6 5046 broad.mit.edu;ucsc.edu 37 15 101971643 101971643 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCSK7 9159 hgsc.bcm.edu 37 11 117076875 117076875 + Silent SNP G G A rs62001039 byfrequency TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCSK9 255738 broad.mit.edu;hgsc.bcm.edu 37 1 55505552 55505553 + In_Frame_Ins INS - - CTG novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK9 255738 broad.mit.edu;hgsc.bcm.edu 37 1 55527082 55527082 + Silent SNP C C T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK9 255738 broad.mit.edu;hgsc.bcm.edu 37 1 55529175 55529175 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK9 255738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55509579 55509579 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK9 255738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55509580 55509580 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCSK9 255738 hgsc.bcm.edu 37 1 55512295 55512295 + Missense_Mutation SNP C C G rs137878146 unknown;alternate_allele TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCTP 58488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53853436 53853436 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCYOX1 51449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70502693 70502693 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCYOX1L 78991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148742273 148742273 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PCYOX1L 78991 hgsc.bcm.edu 37 5 148747050 148747050 + Silent SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCYT1B 9468 broad.mit.edu 37 X 24577570 24577570 + 3'UTR DEL G - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PCYT1B 9468 hgsc.bcm.edu 37 X 24625963 24625963 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PCYT2 5833 hgsc.bcm.edu 37 17 79866843 79866843 + Silent SNP G G T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDAP1 11333 broad.mit.edu 37 7 98994127 98994127 + 3'UTR DEL C - - rs113663373 unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDAP1 11333 broad.mit.edu 37 7 98994127 98994127 + 3'UTR DEL C - - rs113663373 unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDAP1 11333 broad.mit.edu 37 7 98994127 98994127 + 3'UTR DEL C - - rs113663373 unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDC 5132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186415580 186415580 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD11 22984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105166476 105166476 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD11 22984 hgsc.bcm.edu;ucsc.edu 37 10 105164925 105164925 + Silent SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID PDCD1LG2 80380 broad.mit.edu 37 9 5570132 5570132 + 3'UTR SNP G A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDCD1LG2 80380 broad.mit.edu 37 9 5570162 5570162 + 3'UTR SNP C T T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDCD2 5134 hgsc.bcm.edu;ucsc.edu 37 6 170892196 170892196 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD2L 84306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34904640 34904640 + Splice_Site SNP A A C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD2L 84306 hgsc.bcm.edu 37 19 34900211 34900211 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDCD5 9141 broad.mit.edu 37 19 33077619 33077619 + Intron SNP A G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDCD5 9141 broad.mit.edu;hgsc.bcm.edu 37 19 33077874 33077874 + Intron SNP G G T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD6IP 10015 broad.mit.edu 37 3 33868211 33868211 + Intron DEL T - - rs5847793 unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDCD6IP 10015 broad.mit.edu;hgsc.bcm.edu 37 3 33887039 33887039 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD6IP 10015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33855050 33855050 + Splice_Site SNP G G A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCD6IP 10015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33905544 33905544 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCL2 132954 broad.mit.edu 37 4 56448342 56448342 + Silent SNP T C C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDCL2 132954 broad.mit.edu;hgsc.bcm.edu 37 4 56435977 56435977 + Silent SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDCL 5082 hgsc.bcm.edu;ucsc.edu 37 9 125582825 125582825 + Missense_Mutation SNP G G A rs147830688 byfrequency TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDCL 5082 hgsc.bcm.edu;ucsc.edu 37 9 125585437 125585437 + Missense_Mutation SNP T T G novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDDC1 347862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 771046 771046 + Silent SNP A A G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE10A 10846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 165844947 165844947 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE10A 10846 hgsc.bcm.edu 37 6 165862393 165862393 + Intron SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE10A 10846 hgsc.bcm.edu 37 6 165862393 165862393 + Intron SNP A A T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE11A 50940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178936671 178936671 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE11A 50940 hgsc.bcm.edu 37 2 178576587 178576587 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE11A 50940 hgsc.bcm.edu 37 2 178936994 178936994 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE12 201626 hgsc.bcm.edu 37 3 57542940 57542940 + Silent SNP T T C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE12 201626 hgsc.bcm.edu;ucsc.edu 37 3 57542938 57542938 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE1A 5136 hgsc.bcm.edu;ucsc.edu 37 2 183050723 183050723 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE1B 5153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54962995 54962995 + Silent SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE1B 5153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54967242 54967242 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE1B 5153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54970410 54970410 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE1B 5153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54971106 54971106 + Silent SNP G G A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE1B 5153 hgsc.bcm.edu 37 12 54963142 54963142 + Silent SNP C C T rs151025806 byfrequency TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE1C 5137 broad.mit.edu 37 7 32338297 32338304 + Frame_Shift_Del DEL GGCGCTCC - - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 GGCGCTCC GGCGCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE2A 5138 broad.mit.edu 37 11 72385332 72385367 + 5'UTR DEL ACCCCCAGCAGGCACAGGGACCAAGAGCAGTGGGCT - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 ACCCCCAGCAGGCACAGGGACCAAGAGCAGTGGGCT ACCCCCAGCAGGCACAGGGACCAAGAGCAGTGGGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE2A 5138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 72300797 72300797 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE2A 5138 hgsc.bcm.edu 37 11 72295997 72295997 + Splice_Region SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE2A 5138 hgsc.bcm.edu;ucsc.edu 37 11 72296646 72296646 + Splice_Region SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE3A 5139 broad.mit.edu;hgsc.bcm.edu 37 12 20832968 20832968 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE3A 5139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 20792854 20792854 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE3A 5139 broad.mit.edu;ucsc.edu 37 12 20801757 20801757 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE3A 5139 hgsc.bcm.edu;ucsc.edu 37 12 20803458 20803458 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE3B 5140 broad.mit.edu 37 11 14793670 14793670 + Intron SNP A T T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE3B 5140 broad.mit.edu;hgsc.bcm.edu 37 11 14793556 14793556 + Intron SNP A A C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE3B 5140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 14852297 14852297 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4A 5141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10568586 10568586 + Silent SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4A 5141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10574570 10574570 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4A 5141 hgsc.bcm.edu;ucsc.edu 37 19 10565503 10565503 + Splice_Site SNP A A C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4B 5142 broad.mit.edu 37 1 66827366 66827366 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4B 5142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 66798124 66798124 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4C 5143 broad.mit.edu 37 19 18322678 18322678 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4C 5143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18328978 18328978 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4C 5143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18331077 18331077 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4C 5143 hgsc.bcm.edu 37 19 18322690 18322691 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4C 5143 hgsc.bcm.edu 37 19 18327573 18327573 + Missense_Mutation SNP A A T rs144273719 unknown;alternate_allele TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4C 5143 hgsc.bcm.edu 37 19 18327665 18327665 + Silent SNP C C A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4C 5143 hgsc.bcm.edu 37 19 18329004 18329004 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4D 5144 broad.mit.edu 37 5 59284181 59284181 + 3'UTR DEL T - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4D 5144 broad.mit.edu 37 5 59284181 59284181 + 3'UTR DEL T - - novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4D 5144 broad.mit.edu 37 5 59284181 59284181 + 3'UTR DEL T - - novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4D 5144 broad.mit.edu;ucsc.edu 37 5 59284433 59284433 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4D 5144 hgsc.bcm.edu;ucsc.edu 37 5 58882134 58882134 + Intron SNP A A T novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 broad.mit.edu 37 1 144923791 144923791 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 144930951 144930951 + Intron SNP G T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 144931739 144931739 + Intron SNP A C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145013762 145013762 + Intron DEL A - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145017964 145017965 + 5'UTR INS - T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145018102 145018103 + Intron INS - AGAA AGAA rs4068417 unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145018385 145018385 + Intron DEL A - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145039633 145039633 + 5'UTR SNP C T T rs2762750 byfrequency TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145039633 145039633 + 5'UTR SNP C T T rs2762750 byfrequency TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145039633 145039633 + 5'UTR SNP C T T rs2762750 byfrequency TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145074882 145074882 + 3'UTR SNP G T T rs3845334 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145074882 145074882 + 3'UTR SNP G T T rs3845334 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145074882 145074882 + 3'UTR SNP G T T rs3845334 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu 37 1 145075923 145075923 + 5'UTR SNP C T T rs6656135 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144857634 144857634 + Silent SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144865887 144865887 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144922040 144922040 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144931029 144931029 + Missense_Mutation SNP G G A rs149466177 unknown;alternate_allele TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144931265 144931265 + Silent SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144931293 144931293 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 144912241 144912241 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE4DIP 9659 hgsc.bcm.edu 37 1 144856852 144856852 + Silent SNP C C T rs150847495 byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 144864284 144864284 + Silent SNP C C G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 144864284 144864284 + Silent SNP C C G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 144868085 144868085 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 144871742 144871742 + Silent SNP A A T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 144906421 144906421 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 144906486 144906486 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE4DIP 9659 hgsc.bcm.edu 37 1 145039594 145039594 + Missense_Mutation SNP T T C rs111958438 unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE5A 8654 broad.mit.edu 37 4 120548404 120548404 + Intron SNP G C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE5A 8654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 120442144 120442144 + Silent SNP A A G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE5A 8654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 120446851 120446851 + Splice_Site SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE6A 5145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149240511 149240511 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE6B 5158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 654278 654278 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE6B 5158 broad.mit.edu;ucsc.edu 37 4 649741 649741 + Silent SNP C G G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDE6B 5158 hgsc.bcm.edu;ucsc.edu 37 4 628559 628559 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE6C 5146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 95415548 95415548 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE6C 5146 hgsc.bcm.edu;ucsc.edu 37 10 95372619 95372619 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE7B 27115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136500189 136500189 + Silent SNP G G A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE8A 5151 broad.mit.edu;hgsc.bcm.edu 37 15 85659326 85659326 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDE8A 5151 hgsc.bcm.edu;ucsc.edu 37 15 85619170 85619170 + Intron SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE8A 5151 hgsc.bcm.edu;ucsc.edu 37 15 85643406 85643406 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDE8B 8622 hgsc.bcm.edu 37 5 76703260 76703260 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDGFB 5155 hgsc.bcm.edu 37 22 39621821 39621821 + Silent SNP C C A rs148231529 unknown;alternate_allele TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDGFC 56034 hgsc.bcm.edu 37 4 157892006 157892006 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDGFD 80310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103797665 103797665 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDGFRA 5156 broad.mit.edu 37 4 55095489 55095490 + 5'UTR DEL AG - - rs113739379 bycluster;by1000genomes TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDGFRA 5156 broad.mit.edu 37 4 55095489 55095490 + 5'UTR DEL AG - - rs113739379 bycluster;by1000genomes TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDGFRA 5156 broad.mit.edu 37 4 55156677 55156677 + Missense_Mutation SNP C A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDGFRA 5156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55131181 55131181 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDGFRA 5156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55156689 55156689 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDGFRA 5156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55156690 55156690 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDGFRA 5156 broad.mit.edu;ucsc.edu 37 4 55155210 55155210 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDGFRA 5156 hgsc.bcm.edu 37 4 55133800 55133800 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDGFRA 5156 hgsc.bcm.edu 37 4 55141031 55141031 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PDGFRB 5159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149499609 149499609 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDGFRB 5159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149505045 149505045 + Silent SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G G A G G Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq PDGFRB 5159 broad.mit.edu;ucsc.edu 37 5 149505046 149505046 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDGFRB 5159 hgsc.bcm.edu 37 5 149506122 149506122 + Silent SNP G G C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDGFRB 5159 hgsc.bcm.edu;ucsc.edu 37 5 149506140 149506140 + Silent SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDGFRL 5157 broad.mit.edu 37 8 17500440 17500440 + 3'UTR SNP A C C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDHA1 5160 broad.mit.edu 37 X 19363864 19363864 + Intron DEL C - - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDHA1 5160 broad.mit.edu 37 X 19363864 19363865 + Intron DEL CC - - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDHA1 5160 broad.mit.edu 37 X 19363864 19363865 + Intron DEL CC - - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDHA1 5160 broad.mit.edu 37 X 19373319 19373319 + Intron SNP T C C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDHA1 5160 hgsc.bcm.edu;ucsc.edu 37 X 19369447 19369447 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDHA2 5161 hgsc.bcm.edu 37 4 96761930 96761949 + Frame_Shift_Del DEL CTTTATGGAAATTACCTTGT CTTTATGGAAATTACCTTGT - novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 CTTTATGGAAATTACCTTGT CTTTATGGAAATTACCTTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDHB 5162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 58416621 58416621 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDHX 8050 broad.mit.edu 37 11 34938126 34938126 + 5'UTR SNP G T T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDHX 8050 hgsc.bcm.edu 37 11 35016594 35016594 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDHX 8050 hgsc.bcm.edu;ucsc.edu 37 11 35016578 35016578 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDIA2 64714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 336870 336870 + Silent SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDIA3 2923 broad.mit.edu;hgsc.bcm.edu 37 15 44060741 44060741 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDIA3P 171423 broad.mit.edu 37 1 146649788 146649788 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDIA5 10954 hgsc.bcm.edu 37 3 122849455 122849455 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDIA6 10130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10931989 10931989 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDIA6 10130 broad.mit.edu;ucsc.edu 37 2 10924426 10924426 + Silent SNP G A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDIA6 10130 hgsc.bcm.edu;ucsc.edu 37 2 10924442 10924442 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDIK1L 149420 broad.mit.edu 37 1 26449195 26449196 + 3'UTR INS - T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDIK1L 149420 broad.mit.edu 37 1 26449196 26449196 + 3'UTR DEL T - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDILT 204474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20380853 20380853 + Silent SNP G G T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDILT 204474 hgsc.bcm.edu;ucsc.edu 37 16 20384428 20384428 + Missense_Mutation SNP C C T rs141043720 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDK1 5163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173435508 173435508 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDK2 5164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48183306 48183306 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDK3 5165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24537120 24537120 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDK4 5166 broad.mit.edu 37 7 95225789 95225790 + 5'UTR INS - GG GG rs72572711 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDLIM1 9124 broad.mit.edu 37 10 96997589 96997589 + 3'UTR SNP A G G rs1049961 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDLIM1 9124 broad.mit.edu 37 10 96998112 96998112 + Intron DEL T - - rs145144736 bycluster;by1000genomes TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDLIM1 9124 broad.mit.edu 37 10 96998112 96998112 + Intron DEL T - - rs145144736 bycluster;by1000genomes TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDLIM2 64236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22452072 22452072 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDLIM3 27295 broad.mit.edu 37 4 186423169 186423169 + 3'UTR DEL A - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDLIM4 8572 broad.mit.edu;hgsc.bcm.edu 37 5 131598428 131598428 + Missense_Mutation SNP G G T rs138635559 unknown;alternate_allele TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDLIM4 8572 broad.mit.edu;hgsc.bcm.edu 37 5 131607572 131607572 + Silent SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDLIM4 8572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131606692 131606692 + Missense_Mutation SNP G G C rs141857035 byfrequency;alternate_allele TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDLIM5 10611 broad.mit.edu 37 4 95505929 95505930 + Intron INS - T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDLIM5 10611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 95583632 95583632 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDLIM5 10611 hgsc.bcm.edu;ucsc.edu 37 4 95503859 95503859 + RNA SNP T T G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDP2 57546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66919397 66919397 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDPN 10630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 13936955 13936955 + Missense_Mutation SNP C C T rs189019995 by1000genomes TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDPR 55066 broad.mit.edu 37 16 70180077 70180077 + Silent SNP T C C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDPR 55066 broad.mit.edu 37 16 70192462 70192463 + 3'UTR DEL TA - - rs10569344 bycluster;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDPR 55066 hgsc.bcm.edu 37 16 70154480 70154480 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDPR 55066 hgsc.bcm.edu 37 16 70154480 70154480 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDPR 55066 hgsc.bcm.edu 37 16 70172890 70172890 + Missense_Mutation SNP C C T rs142218067 by1000genomes TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDPR 55066 hgsc.bcm.edu 37 16 70172890 70172890 + Missense_Mutation SNP C C T rs142218067 by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDRG1 81572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30538174 30538174 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5A 23244 broad.mit.edu;hgsc.bcm.edu 37 4 39851255 39851255 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5A 23244 hgsc.bcm.edu;ucsc.edu 37 4 39850476 39850476 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDS5A 23244 hgsc.bcm.edu;ucsc.edu 37 4 39905679 39905679 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDS5A 23244 hgsc.bcm.edu;ucsc.edu 37 4 39929780 39929780 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDS5B 23047 broad.mit.edu 37 13 33226360 33226360 + Intron DEL T - - rs113948248 unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDS5B 23047 broad.mit.edu 37 13 33332255 33332255 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDS5B 23047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33222938 33222938 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5B 23047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33261392 33261392 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5B 23047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33275559 33275559 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5B 23047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33316758 33316758 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5B 23047 hgsc.bcm.edu 37 13 33281137 33281137 + Silent SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDS5B 23047 hgsc.bcm.edu 37 13 33306263 33306263 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDS5B 23047 hgsc.bcm.edu 37 13 33344580 33344580 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDS5B 23047 hgsc.bcm.edu;ucsc.edu 37 13 33232396 33232396 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDSS1 23590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 26994248 26994248 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDSS2 57107 broad.mit.edu 37 6 107531364 107531364 + Intron DEL A - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDSS2 57107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 107655484 107655484 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDSS2 57107 hgsc.bcm.edu 37 6 107655456 107655456 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDSS2 57107 hgsc.bcm.edu;ucsc.edu 37 6 107595237 107595237 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDXDC1 23042 broad.mit.edu 37 16 15083531 15083531 + Intron SNP C A A rs62038549 unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15083531 15083531 + Intron SNP C A A rs62038549 unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15083569 15083570 + Intron INS - GCA GCA novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15083569 15083570 + Intron INS - GCA GCA novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15130333 15130334 + 3'UTR INS - AT AT rs10668713 bycluster;by1000genomes TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15221657 15221657 + Intron SNP C T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15221657 15221657 + Intron SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15221853 15221853 + Intron SNP G A A rs79846201 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15224576 15224576 + Intron SNP T C C rs2519249 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu 37 16 15225426 15225426 + Intron SNP C G G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC1 23042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15126793 15126793 + Silent SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDXDC1 23042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15129348 15129348 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDXDC1 23042 hgsc.bcm.edu 37 16 15098047 15098047 + Missense_Mutation SNP C C G rs11549900 bycluster;byfrequency;by1000genomes TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDXDC2 0 broad.mit.edu 37 16 70012167 70012167 + Silent SNP C G G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC2 0 broad.mit.edu 37 16 70012183 70012183 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXDC2 0 broad.mit.edu 37 16 70058574 70058574 + Splice_Site SNP C G G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXK 8566 broad.mit.edu 37 21 45152325 45152325 + Intron SNP T G G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXK 8566 broad.mit.edu 37 21 45157732 45157732 + Intron DEL G - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXK 8566 broad.mit.edu 37 21 45177966 45177966 + 3'UTR DEL A - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDXK 8566 hgsc.bcm.edu;ucsc.edu 37 21 45163648 45163649 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDXK 8566 hgsc.bcm.edu;ucsc.edu 37 21 45178510 45178510 + 3'UTR SNP C C T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDXP 57026 broad.mit.edu;hgsc.bcm.edu 37 22 38055358 38055358 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDYN 5173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1961113 1961113 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDYN 5173 hgsc.bcm.edu 37 20 1961196 1961196 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDZD2 23037 broad.mit.edu 37 5 32100649 32100649 + Intron DEL G - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDZD2 23037 broad.mit.edu;hgsc.bcm.edu 37 5 32000300 32000300 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu 37 5 32088233 32088233 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu 37 5 32088238 32088238 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu 37 5 32090571 32090571 + Silent SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32052785 32052785 + Silent SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32059357 32059357 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32088407 32088407 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32089797 32089797 + Silent SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32090803 32090803 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PDZD2 23037 hgsc.bcm.edu 37 5 31799371 31799371 + Missense_Mutation SNP G G A rs116598198 bycluster;byfrequency;by1000genomes TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDZD2 23037 hgsc.bcm.edu;ucsc.edu 37 5 32061215 32061215 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID PDZD2 23037 hgsc.bcm.edu;ucsc.edu 37 5 32071482 32071482 + Intron SNP T T C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD2 23037 hgsc.bcm.edu;ucsc.edu 37 5 32089022 32089022 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID PDZD3 79849 broad.mit.edu;hgsc.bcm.edu 37 11 119059909 119059909 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD3 79849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119059108 119059108 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD8 118987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 119044693 119044693 + Silent SNP T T C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD8 118987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 119049791 119049791 + Silent SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZD8 118987 hgsc.bcm.edu;ucsc.edu 37 10 119043260 119043260 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDZD9 255762 hgsc.bcm.edu;ucsc.edu 37 16 22000067 22000067 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PDZK1IP1 10158 broad.mit.edu 37 1 47649487 47649487 + 3'UTR SNP C T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PDZRN3 23024 broad.mit.edu;hgsc.bcm.edu 37 3 73432856 73432856 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PDZRN4 29951 hgsc.bcm.edu 37 12 41966392 41966392 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID PEAK1 79834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77406695 77406695 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEAK1 79834 hgsc.bcm.edu 37 15 77471485 77471485 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEAK1 79834 hgsc.bcm.edu;ucsc.edu 37 15 77471481 77471481 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEAR1 375033 hgsc.bcm.edu 37 1 156878751 156878751 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PEBP4 157310 hgsc.bcm.edu;ucsc.edu 37 8 22777758 22777758 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PECI 0 broad.mit.edu;hgsc.bcm.edu 37 6 4125471 4125471 + RNA SNP G G T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PECI 0 broad.mit.edu;ucsc.edu 37 6 4117641 4117641 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PECR 55825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216908708 216908708 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEF1 553115 broad.mit.edu 37 1 32096480 32096480 + Intron SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEF1 553115 broad.mit.edu 37 1 32096480 32096480 + Intron SNP A C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEG3 5178 broad.mit.edu 37 19 57336061 57336061 + 5'UTR SNP G A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57325755 57325755 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57325778 57325778 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57325907 57325907 + Silent SNP T T G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57326087 57326087 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57327329 57327329 + Silent SNP T T C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57327461 57327461 + Silent SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57329187 57329187 + Silent SNP G G A rs142177720 by1000genomes TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57335855 57335855 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEG3 5178 broad.mit.edu;ucsc.edu 37 19 57330017 57330017 + Missense_Mutation SNP G T T rs80150589 bycluster;byfrequency;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEG3 5178 hgsc.bcm.edu;ucsc.edu 37 19 57327195 57327195 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PELI1 57162 broad.mit.edu 37 2 64321726 64321726 + 3'UTR SNP T A A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PELI1 57162 hgsc.bcm.edu;ucsc.edu 37 2 64335371 64335371 + Splice_Region SNP T T G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PELI2 57161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 56757030 56757030 + Silent SNP G G T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PELI2 57161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 56757051 56757051 + Silent SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PELI2 57161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 56757052 56757052 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PELI2 57161 hgsc.bcm.edu 37 14 56746421 56746421 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PELO 53918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 52096856 52096856 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PELP1 27043 hgsc.bcm.edu 37 17 4576620 4576620 + Silent SNP C C T rs55677157 byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PELP1 27043 hgsc.bcm.edu;ucsc.edu 37 17 4577915 4577915 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PENK 5179 broad.mit.edu 37 8 57359051 57359052 + 5'Flank INS - A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PENK 5179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57353861 57353861 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PENK 5179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57354177 57354177 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PENK 5179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57354188 57354188 + Silent SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEPD 5184 broad.mit.edu 37 19 33878071 33878072 + 3'UTR INS - TAAT TAAT rs16426 bycluster;byfrequency;by1000genomes TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEPD 5184 broad.mit.edu 37 19 33878351 33878351 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEPD 5184 broad.mit.edu 37 19 33882246 33882246 + Silent SNP G A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEPD 5184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33902626 33902626 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEPD 5184 hgsc.bcm.edu 37 19 33980898 33980898 + Intron SNP T T C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PER1 5187 broad.mit.edu 37 17 8054097 8054097 + 5'UTR SNP T C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PER1 5187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8047092 8047092 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PER1 5187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8048306 8048306 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PER1 5187 broad.mit.edu;ucsc.edu 37 17 8052099 8052099 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PER1 5187 hgsc.bcm.edu 37 17 8051110 8051110 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID PER2 8864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239180147 239180147 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PER2 8864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239186456 239186456 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PER2 8864 broad.mit.edu;ucsc.edu 37 2 239181739 239181739 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PER2 8864 hgsc.bcm.edu 37 2 239168697 239168697 + Intron SNP T T G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PER2 8864 hgsc.bcm.edu;ucsc.edu 37 2 239185783 239185783 + Silent SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PER3 8863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 7886603 7886603 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PER3 8863 hgsc.bcm.edu 37 1 7890053 7890053 + Missense_Mutation SNP G G A rs1776342 bycluster;byfrequency;by2hit2allele TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PES1 23481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30973095 30973095 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PES1 23481 hgsc.bcm.edu;ucsc.edu 37 22 30983297 30983299 + In_Frame_Del DEL TTG TTG - novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PET112L 0 broad.mit.edu;hgsc.bcm.edu 37 4 152592258 152592258 + 3'UTR SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX11G 92960 hgsc.bcm.edu 37 19 7550828 7550828 + Missense_Mutation SNP G G C rs139507247 unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PEX12 5193 broad.mit.edu 37 17 33905215 33905215 + 5'UTR SNP G A A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX14 5195 broad.mit.edu 37 1 10683249 10683249 + Intron SNP C T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX14 5195 broad.mit.edu 37 1 10690081 10690081 + 3'UTR SNP C A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX1 5189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92132412 92132414 + In_Frame_Del DEL AAC AAC - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX1 5189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92136429 92136429 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX1 5189 hgsc.bcm.edu 37 7 92147480 92147480 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PEX19 5824 broad.mit.edu 37 1 160246990 160246990 + 3'UTR DEL T - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX2 5828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77896064 77896064 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX26 55670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18566476 18566476 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX26 55670 broad.mit.edu;ucsc.edu 37 22 18566233 18566233 + Silent SNP T G G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX3 8504 broad.mit.edu 37 6 143793617 143793617 + Intron SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX3 8504 broad.mit.edu 37 6 143811741 143811741 + 3'UTR SNP T A A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX3 8504 hgsc.bcm.edu;ucsc.edu 37 6 143780242 143780242 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PEX3 8504 hgsc.bcm.edu;ucsc.edu 37 6 143792575 143792575 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PEX5 5830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7360264 7360264 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX5 5830 hgsc.bcm.edu;ucsc.edu 37 12 7343480 7343480 + Splice_Region SNP T T A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PEX5L 51555 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 179526182 179526182 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PEX6 5190 broad.mit.edu 37 6 42931628 42931631 + 3'UTR DEL TTTA - - rs144286892 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TTTA TTTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX6 5190 broad.mit.edu 37 6 42931981 42931981 + 3'UTR SNP C G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PEX7 5191 hgsc.bcm.edu 37 6 137193320 137193320 + Intron SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PF4 5196 broad.mit.edu 37 4 74847209 74847209 + Missense_Mutation SNP G A A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PFAS 5198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8168629 8168629 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFAS 5198 hgsc.bcm.edu;ucsc.edu 37 17 8166974 8166974 + Intron SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFDN4 5203 broad.mit.edu;ucsc.edu 37 20 52835595 52835595 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PFDN5 5204 broad.mit.edu;hgsc.bcm.edu 37 12 53689313 53689313 + 5'UTR SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFDN5 5204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53691896 53691896 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFDN6 10471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33257668 33257668 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKFB1 5207 broad.mit.edu 37 X 54959758 54959759 + 3'UTR INS - AGC AGC novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PFKFB1 5207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54982603 54982603 + Silent SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKFB3 5209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6257233 6257233 + Silent SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKFB3 5209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6268194 6268194 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKL 5211 broad.mit.edu 37 21 45739440 45739440 + Intron SNP T C C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PFKL 5211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45742915 45742915 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKM 5213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48516579 48516579 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKM 5213 hgsc.bcm.edu;ucsc.edu 37 12 48526705 48526705 + Nonsense_Mutation SNP C C T rs138893744 unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PFKP 5214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 3151561 3151561 + Silent SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFKP 5214 hgsc.bcm.edu 37 10 3172145 3172145 + Silent SNP C C T rs1052337 bycluster;byfrequency;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFN1 5216 broad.mit.edu 37 17 4849140 4849140 + 3'UTR SNP G T T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PFN2 5217 broad.mit.edu;ucsc.edu 37 3 149684007 149684007 + 3'UTR SNP G A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PFN2 5217 hgsc.bcm.edu;ucsc.edu 37 3 149684027 149684027 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PFN3 345456 broad.mit.edu;hgsc.bcm.edu 37 5 176827583 176827583 + 5'UTR SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PFN4 375189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24338472 24338472 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGAM1 5223 broad.mit.edu 37 10 99186086 99186086 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGAM2 5224 hgsc.bcm.edu;ucsc.edu 37 7 44104731 44104735 + Frame_Shift_Del DEL TAGTA TAGTA - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 TAGTA TAGTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGAM5 192111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133295376 133295376 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGAP1 80055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197777686 197777686 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGAP1 80055 hgsc.bcm.edu;ucsc.edu 37 2 197755547 197755547 + Intron SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGAP2 27315 broad.mit.edu 37 11 3829297 3829299 + 5'Flank DEL CGG - - rs143290390 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGAP2 27315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3846652 3846652 + Silent SNP G G A rs151115501 byfrequency;alternate_allele TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGAP3 93210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37829071 37829071 + Silent SNP C C T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGBD1 84547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28251758 28251758 + Silent SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGBD1 84547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28268767 28268767 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGBD1 84547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28269985 28269985 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGBD1 84547 hgsc.bcm.edu;ucsc.edu 37 6 28269595 28269595 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGBD2 267002 hgsc.bcm.edu;ucsc.edu 37 1 249212354 249212354 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGBD3 267004 hgsc.bcm.edu 37 10 50725062 50725062 + Silent SNP A A T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGBD5 79605 broad.mit.edu 37 1 230503709 230503709 + Intron SNP A C C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGBD5 79605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230461073 230461073 + Silent SNP G G A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGC 5225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41712242 41712242 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGC 5225 hgsc.bcm.edu;ucsc.edu 37 6 41711090 41711090 + Silent SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGCP 0 hgsc.bcm.edu 37 8 97847356 97847357 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGCP 0 hgsc.bcm.edu;ucsc.edu 37 8 97892144 97892144 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGCP 0 hgsc.bcm.edu;ucsc.edu 37 8 97892231 97892231 + Missense_Mutation SNP C C A rs149951331 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGD 5226 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10477169 10477169 + Silent SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGF 5228 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75416059 75416059 + Splice_Site SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGK1 5230 broad.mit.edu;hgsc.bcm.edu 37 X 77373615 77373615 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGK1 5230 broad.mit.edu;hgsc.bcm.edu 37 X 77380396 77380396 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGLYRP2 114770 broad.mit.edu;hgsc.bcm.edu 37 19 15586606 15586606 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGLYRP2 114770 broad.mit.edu;hgsc.bcm.edu 37 19 15587107 15587107 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGLYRP3 114771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153271694 153271694 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PGLYRP3 114771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153274993 153274993 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PGLYRP3 114771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153277480 153277480 + Missense_Mutation SNP G G C novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PGLYRP3 114771 broad.mit.edu;ucsc.edu 37 1 153275057 153275057 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGLYRP4 57115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153303264 153303264 + Silent SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGM1 5236 broad.mit.edu 37 1 64059088 64059088 + 5'UTR SNP G C C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGM2 55276 broad.mit.edu;ucsc.edu 37 4 37839173 37839173 + Missense_Mutation SNP A G G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGM2 55276 hgsc.bcm.edu;ucsc.edu 37 4 37845989 37845989 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGM2L1 283209 hgsc.bcm.edu 37 11 74081946 74081946 + Splice_Site SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGM5 5239 hgsc.bcm.edu 37 9 71094451 71094452 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGM5 5239 hgsc.bcm.edu 37 9 71094451 71094452 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGM5P2 595135 broad.mit.edu 37 9 69113733 69113733 + RNA SNP G T T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PGPEP1 54858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18466813 18466813 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGPEP1L 145814 broad.mit.edu;hgsc.bcm.edu 37 15 99511854 99511854 + Silent SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGPEP1L 145814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99511748 99511748 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGPEP1L 145814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99512702 99512702 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGPEP1L 145814 hgsc.bcm.edu 37 15 99511804 99511805 + Frame_Shift_Ins INS - - C rs5814919 bycluster;by1000genomes TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGPEP1L 145814 hgsc.bcm.edu 37 15 99511804 99511805 + Frame_Shift_Ins INS - - C rs5814919 bycluster;by1000genomes TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGPEP1L 145814 hgsc.bcm.edu 37 15 99511807 99511808 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGPEP1L 145814 hgsc.bcm.edu 37 15 99511807 99511808 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGR 5241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 100933375 100933375 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGRMC1 10857 broad.mit.edu;hgsc.bcm.edu 37 X 118370278 118370278 + 5'UTR SNP C C T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PGS1 9489 hgsc.bcm.edu;ucsc.edu 37 17 76388642 76388642 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PGS1 9489 hgsc.bcm.edu;ucsc.edu 37 17 76396757 76396757 + Splice_Site SNP G G A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHACTR1 221692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 13206174 13206174 + Silent SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR1 221692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 13283726 13283726 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR3 116154 broad.mit.edu 37 20 58422430 58422430 + 3'UTR SNP A G G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHACTR3 116154 broad.mit.edu;hgsc.bcm.edu 37 20 58342420 58342420 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR3 116154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 58318178 58318178 + Silent SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR3 116154 hgsc.bcm.edu 37 20 58322874 58322874 + Silent SNP G G A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHACTR4 65979 broad.mit.edu 37 1 28802704 28802704 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHACTR4 65979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28764918 28764918 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR4 65979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28785764 28785764 + Nonsense_Mutation SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR4 65979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28800469 28800469 + Silent SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHACTR4 65979 hgsc.bcm.edu 37 1 28785730 28785730 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHAX 51808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 125939331 125939331 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHB2 11331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7079388 7079388 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHC1 1911 broad.mit.edu;hgsc.bcm.edu 37 12 9070228 9070228 + 5'UTR SNP C C A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHC2 1912 broad.mit.edu;hgsc.bcm.edu 37 1 33841143 33841143 + 5'UTR SNP C C A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHC2 1912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33796958 33796958 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHC2 1912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33820614 33820614 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHC2 1912 hgsc.bcm.edu 37 1 33820749 33820769 + In_Frame_Del DEL GGCTGCTGCTGTTGTGGCTGT GGCTGCTGCTGTTGTGGCTGT - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GGCTGCTGCTGTTGTGGCTGT GGCTGCTGCTGTTGTGGCTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHC3 80012 broad.mit.edu 37 3 169888973 169888974 + Intron DEL CT - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF11 51131 hgsc.bcm.edu;ucsc.edu 37 13 50100561 50100561 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF12 57649 broad.mit.edu;hgsc.bcm.edu 37 17 27250942 27250942 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF12 57649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27233901 27233901 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF12 57649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27251182 27251182 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF12 57649 hgsc.bcm.edu 37 17 27233226 27233226 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF13 148479 hgsc.bcm.edu;ucsc.edu 37 1 6676887 6676887 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF14 9678 broad.mit.edu 37 7 11076624 11076624 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF14 9678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 11078422 11078422 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF15 23338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 133887864 133887864 + Silent SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF15 23338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 133914214 133914214 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF15 23338 hgsc.bcm.edu 37 5 133895609 133895610 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF1 5252 hgsc.bcm.edu;ucsc.edu 37 6 33382506 33382507 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF16 9767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 46887437 46887437 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF16 9767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 46917973 46917973 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF16 9767 broad.mit.edu;ucsc.edu 37 X 46887397 46887397 + Silent SNP A C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF17 79960 broad.mit.edu 37 4 129783527 129783527 + Intron DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF17 79960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129789065 129789065 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF17 79960 broad.mit.edu;ucsc.edu 37 4 129782923 129782923 + Missense_Mutation SNP T G G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF19 26147 hgsc.bcm.edu 37 9 123620470 123620470 + Missense_Mutation SNP G G C rs150031973 byfrequency;alternate_allele TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF19 26147 hgsc.bcm.edu;ucsc.edu 37 9 123623458 123623458 + Intron SNP G G T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20 51230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34457385 34457385 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20 51230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34459576 34459576 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20 51230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34459730 34459730 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20 51230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34487450 34487450 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20 51230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34515757 34515757 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20 51230 hgsc.bcm.edu 37 20 34451134 34451134 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF20 51230 hgsc.bcm.edu;ucsc.edu 37 20 34458954 34458954 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF20L1 51105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 133850030 133850030 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF20L1 51105 hgsc.bcm.edu 37 8 133816091 133816091 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF20L1 51105 hgsc.bcm.edu;ucsc.edu 37 8 133807018 133807018 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF21A 51317 broad.mit.edu 37 11 45955418 45955418 + 3'UTR SNP A T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF21A 51317 hgsc.bcm.edu 37 11 45955639 45955639 + Silent SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF21A 51317 hgsc.bcm.edu;ucsc.edu 37 11 46098382 46098382 + Intron SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF21B 112885 hgsc.bcm.edu 37 22 45281729 45281729 + Intron SNP C C T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF21B 112885 hgsc.bcm.edu;ucsc.edu 37 22 45287246 45287246 + Splice_Region SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF23 79142 broad.mit.edu;ucsc.edu 37 17 7139291 7139291 + Missense_Mutation SNP C G G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF2 5253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96415638 96415638 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF2 5253 hgsc.bcm.edu;ucsc.edu 37 9 96439004 96439004 + Silent SNP C C A rs75653373 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF3 23469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 64395089 64395089 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF3 23469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 64416765 64416765 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF3 23469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 64421671 64421671 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF6 84295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133511646 133511646 + 5'UTR SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF6 84295 broad.mit.edu;ucsc.edu 37 X 133551239 133551239 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHF6 84295 hgsc.bcm.edu;ucsc.edu 37 X 133547905 133547905 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF7 51533 hgsc.bcm.edu 37 3 52454991 52454991 + Silent SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHF8 23133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54019191 54019191 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF8 23133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54044120 54044120 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF8 23133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54048718 54048718 + Silent SNP T T C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHF8 23133 broad.mit.edu;ucsc.edu 37 X 54043171 54043171 + Splice_Site SNP T C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHGDH 26227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120254648 120254648 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHGDH 26227 hgsc.bcm.edu 37 1 120277939 120277939 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHIP 55023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 79650693 79650693 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PHIP 55023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 79708068 79708068 + Silent SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PHIP 55023 hgsc.bcm.edu 37 6 79787232 79787232 + Intron SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHIP 55023 hgsc.bcm.edu;ucsc.edu 37 6 79728797 79728797 + Splice_Region SNP G G T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKA1 5255 broad.mit.edu 37 X 71933736 71933736 + Translation_Start_Site SNP C T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHKA1 5255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71831023 71831023 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHKA1 5255 hgsc.bcm.edu;ucsc.edu 37 X 71802268 71802268 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKA2 5256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 18970644 18970644 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHKA2 5256 hgsc.bcm.edu 37 X 18926100 18926100 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKA2 5256 hgsc.bcm.edu;ucsc.edu 37 X 18961909 18961920 + In_Frame_Del DEL AATTGCCTCAAG AATTGCCTCAAG - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 AATTGCCTCAAG AATTGCCTCAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHKB 5257 broad.mit.edu 37 16 47699737 47699737 + Intron SNP A G G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHKB 5257 broad.mit.edu 37 16 47733353 47733353 + 3'UTR SNP G C C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHKB 5257 broad.mit.edu 37 16 47733444 47733444 + 3'UTR SNP A G G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHKB 5257 broad.mit.edu;hgsc.bcm.edu 37 16 47733322 47733322 + 3'UTR SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHKB 5257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 47698832 47698832 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHKB 5257 hgsc.bcm.edu 37 16 47628114 47628114 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKB 5257 hgsc.bcm.edu;ucsc.edu 37 16 47622841 47622841 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKG1 5260 hgsc.bcm.edu 37 7 56155438 56155438 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKG1 5260 hgsc.bcm.edu 37 7 56155465 56155465 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHKG1 5260 hgsc.bcm.edu;ucsc.edu 37 7 56156620 56156620 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHLDA1 22822 broad.mit.edu 37 12 76424953 76424955 + In_Frame_Del DEL TGG - - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 TGG TGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLDA1 22822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 76424988 76424988 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLDB1 23187 broad.mit.edu;hgsc.bcm.edu 37 11 118484605 118484605 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLDB1 23187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118498567 118498567 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLDB2 90102 broad.mit.edu 37 3 111693466 111693466 + 3'UTR SNP G A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLDB2 90102 broad.mit.edu 37 3 111693466 111693466 + 3'UTR SNP G A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLDB3 653583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43999463 43999463 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLPP1 23239 broad.mit.edu 37 18 60646514 60646514 + Silent SNP G A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLPP1 23239 broad.mit.edu 37 18 60646826 60646826 + 3'UTR DEL T - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLPP1 23239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 60497298 60497298 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLPP2 23035 broad.mit.edu 37 16 71679621 71679621 + 3'UTR SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLPP2 23035 broad.mit.edu 37 16 71682687 71682687 + 3'UTR DEL A - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLPP2 23035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71683569 71683569 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLPP2 23035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71683884 71683884 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLPP2 23035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71712811 71712811 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHLPP2 23035 broad.mit.edu;ucsc.edu 37 16 71682850 71682850 + Silent SNP A G G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHLPP2 23035 hgsc.bcm.edu;ucsc.edu 37 16 71689235 71689235 + Silent SNP C C T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHRF1 57661 broad.mit.edu 37 11 608822 608822 + Silent SNP G A A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHRF1 57661 broad.mit.edu;ucsc.edu 37 11 608267 608267 + Silent SNP C A A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PHRF1 57661 hgsc.bcm.edu;ucsc.edu 37 11 611078 611078 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHTF1 10745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114252891 114252891 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHTF1 10745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114267480 114267480 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHTF2 57157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 77469587 77469587 + Silent SNP C C G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHTF2 57157 hgsc.bcm.edu;ucsc.edu 37 7 77552042 77552042 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PHYH 5264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13325777 13325777 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHYHIP 9796 broad.mit.edu;hgsc.bcm.edu 37 8 22084409 22084409 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PHYHIPL 84457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 60994152 60994152 + Silent SNP A A C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI15 51050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 75756222 75756222 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI16 221476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36922553 36922553 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI16 221476 broad.mit.edu;ucsc.edu 37 6 36922579 36922579 + Silent SNP C T T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PI4K2A 55361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99400914 99400914 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4K2B 55300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 25258214 25258214 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;hgsc.bcm.edu 37 22 21081564 21081564 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;hgsc.bcm.edu 37 22 21104191 21104191 + Splice_Site SNP A A G novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21075676 21075676 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21115600 21115600 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21161667 21161667 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21192985 21192985 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 broad.mit.edu;ucsc.edu 37 22 21152931 21152931 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PI4KA 5297 hgsc.bcm.edu 37 22 21068764 21068765 + Frame_Shift_Del INS - - A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KA 5297 hgsc.bcm.edu 37 22 21073055 21073055 + Silent SNP G G C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KAP1 728233 broad.mit.edu 37 22 20385733 20385733 + RNA SNP A G G rs402724 bycluster;byfrequency;by2hit2allele TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PI4KAP1 728233 broad.mit.edu 37 22 20385733 20385733 + RNA SNP A G G rs402724 bycluster;byfrequency;by2hit2allele TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PI4KAP1 728233 broad.mit.edu 37 22 20386644 20386644 + RNA SNP G A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PI4KAP2 375133 broad.mit.edu 37 22 21838301 21838301 + Missense_Mutation SNP C T T rs457751 bycluster;byfrequency TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PI4KB 5298 broad.mit.edu;hgsc.bcm.edu 37 1 151288136 151288136 + Silent SNP G G A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PI4KB 5298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151280208 151280208 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIAS1 8554 broad.mit.edu 37 15 68480214 68480214 + 3'UTR SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIAS1 8554 broad.mit.edu 37 15 68480402 68480403 + 3'UTR INS - A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIAS1 8554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68434675 68434675 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIAS1 8554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68445966 68445966 + Silent SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIAS1 8554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68457098 68457098 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIAS2 9063 hgsc.bcm.edu;ucsc.edu 37 18 44424802 44424803 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIAS4 51588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4013124 4013124 + Silent SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIBF1 10464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 73482729 73482729 + Nonsense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PICALM 8301 hgsc.bcm.edu;ucsc.edu 37 11 85742542 85742550 + In_Frame_Del DEL GTAATGAGA GTAATGAGA - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 GTAATGAGA GTAATGAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PICK1 9463 hgsc.bcm.edu;ucsc.edu 37 22 38467740 38467740 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PICK1 9463 hgsc.bcm.edu;ucsc.edu 37 22 38469817 38469817 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PID1 55022 hgsc.bcm.edu;ucsc.edu 37 2 229890657 229890657 + Silent SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIF1 80119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65114788 65114788 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIF1 80119 hgsc.bcm.edu 37 15 65114484 65114484 + Silent SNP G G A rs8031690 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIF1 80119 hgsc.bcm.edu 37 15 65114501 65114502 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGB 9488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55621962 55621962 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGC 5279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 172411549 172411549 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGF 5281 broad.mit.edu 37 2 46808416 46808416 + 3'UTR SNP A T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGG 54872 broad.mit.edu 37 4 533277 533277 + 3'UTR SNP G A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGG 54872 broad.mit.edu;hgsc.bcm.edu 37 4 493095 493095 + 5'UTR SNP C C T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGG 54872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 515604 515604 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGG 54872 broad.mit.edu;ucsc.edu 37 4 520921 520921 + Silent SNP G A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGK 10026 broad.mit.edu 37 1 77594961 77594961 + Intron SNP A G G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGK 10026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 77627328 77627328 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGL 9487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 16120578 16120578 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGL 9487 hgsc.bcm.edu;ucsc.edu 37 17 16216855 16216855 + Intron SNP C C T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGL 9487 hgsc.bcm.edu;ucsc.edu 37 17 16221127 16221127 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIGM 93183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160001252 160001252 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGN 23556 broad.mit.edu 37 18 59712910 59712911 + 3'UTR INS - A A rs3833870 bycluster;by1000genomes TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGN 23556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 59815498 59815498 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGN 23556 hgsc.bcm.edu;ucsc.edu 37 18 59821799 59821799 + Silent SNP C C G rs144304758 by1000genomes;alternate_allele TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGO 84720 broad.mit.edu 37 9 35093849 35093849 + Intron SNP G A A rs2240115 bycluster;byfrequency;byhapmap;by1000genomes TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGO 84720 broad.mit.edu 37 9 35095479 35095479 + Silent SNP G A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGO 84720 broad.mit.edu;ucsc.edu 37 9 35090534 35090534 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGP 51227 broad.mit.edu;ucsc.edu 37 21 38444809 38444809 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGQ 9091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 629095 629095 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGQ 9091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 633428 633428 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGQ 9091 hgsc.bcm.edu 37 16 632283 632283 + Missense_Mutation SNP G G A rs7187227 bycluster;byfrequency;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGQ 9091 hgsc.bcm.edu 37 16 633353 633353 + Missense_Mutation SNP T T C rs71391136 unknown;alternate_allele TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGQ 9091 hgsc.bcm.edu 37 16 633354 633354 + Missense_Mutation SNP G G A rs710925 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGR 5284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207108891 207108891 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGR 5284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207110826 207110826 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGR 5284 hgsc.bcm.edu 37 1 207110590 207110590 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIGS 94005 broad.mit.edu 37 17 26880657 26880658 + 3'UTR INS - AC AC rs145536032 by1000genomes TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGS 94005 hgsc.bcm.edu 37 17 26888452 26888452 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIGT 51604 broad.mit.edu 37 20 44044813 44044813 + Missense_Mutation SNP C T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIGT 51604 broad.mit.edu;hgsc.bcm.edu 37 20 44049024 44049024 + Silent SNP G G C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGT 51604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44045233 44045233 + Silent SNP A A G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGT 51604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44045300 44045300 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGT 51604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44050027 44050027 + Silent SNP C C T rs141166012 unknown;alternate_allele TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGT 51604 hgsc.bcm.edu 37 20 44054403 44054403 + Silent SNP A A C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIGT 51604 hgsc.bcm.edu 37 20 44054403 44054403 + Silent SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIGU 128869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33225754 33225754 + Silent SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGU 128869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33245016 33245016 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGV 55650 hgsc.bcm.edu;ucsc.edu 37 1 27121228 27121228 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGZ 80235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196674754 196674755 + Frame_Shift_Del INS - - T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIGZ 80235 hgsc.bcm.edu 37 3 196674755 196674755 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIH1D1 55011 broad.mit.edu 37 19 49952403 49952403 + Intron DEL A - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIH1D2 120379 hgsc.bcm.edu;ucsc.edu 37 11 111941954 111941954 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3AP1 118788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98405300 98405300 + Silent SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3C2A 5286 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17118795 17118795 + Silent SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3C2B 5287 broad.mit.edu 37 1 204423683 204423683 + Intron SNP C T T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIK3C2B 5287 hgsc.bcm.edu 37 1 204397328 204397328 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2B 5287 hgsc.bcm.edu 37 1 204397328 204397328 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2B 5287 hgsc.bcm.edu 37 1 204399061 204399061 + Silent SNP A A G rs2271419 bycluster;byfrequency;by1000genomes TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2B 5287 hgsc.bcm.edu 37 1 204399130 204399130 + Silent SNP T T G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2B 5287 hgsc.bcm.edu 37 1 204411750 204411750 + Silent SNP G G C rs147527449 unknown;alternate_allele TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2B 5287 hgsc.bcm.edu 37 1 204419062 204419062 + Missense_Mutation SNP G G T rs142362916 byfrequency;alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2G 5288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 18435099 18435099 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3C2G 5288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 18762521 18762521 + Silent SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3C2G 5288 broad.mit.edu;ucsc.edu 37 12 18649023 18649023 + Silent SNP T C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIK3C2G 5288 hgsc.bcm.edu 37 12 18446881 18446881 + Silent SNP C C T rs7301521 bycluster;byfrequency;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3C2G 5288 hgsc.bcm.edu;ucsc.edu 37 12 18552697 18552697 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID PIK3C3 5289 broad.mit.edu 37 18 39607334 39607334 + Intron SNP A C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIK3C3 5289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 39567803 39567803 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PIK3C3 5289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 39629582 39629582 + Intron SNP G G C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3C3 5289 hgsc.bcm.edu 37 18 39600585 39600585 + Intron SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 178921334 178921334 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A T rs121913279 bycluster TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 178952090 178952090 + Missense_Mutation SNP G G C rs121913277 bycluster TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PIK3CA 5290 hgsc.bcm.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PIK3CA 5290 hgsc.bcm.edu;ucsc.edu 37 3 178916827 178916827 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM SOLID PIK3CA 5290 hgsc.bcm.edu;ucsc.edu 37 3 178916854 178916854 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PIK3CA 5290 hgsc.bcm.edu;ucsc.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID PIK3CA 5290 hgsc.bcm.edu;ucsc.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID PIK3CA 5290 hgsc.bcm.edu;ucsc.edu 37 3 178948101 178948101 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID PIK3CA 5290 hgsc.bcm.edu;ucsc.edu 37 3 178952077 178952077 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID PIK3CB 5291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 138413736 138413736 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3CG 5294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106508218 106508218 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PIK3CG 5294 broad.mit.edu;ucsc.edu 37 7 106509653 106509653 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIK3CG 5294 hgsc.bcm.edu 37 7 106522659 106522659 + Splice_Region SNP A A G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3CG 5294 hgsc.bcm.edu 37 7 106526717 106526717 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3R1 5295 broad.mit.edu 37 5 67595055 67595055 + 3'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIK3R1 5295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 67590479 67590479 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PIK3R1 5295 hgsc.bcm.edu;ucsc.edu 37 5 67589208 67589208 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PIK3R2 5296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18278085 18278085 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R2 5296 hgsc.bcm.edu;ucsc.edu 37 19 18273796 18273796 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R4 30849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130452841 130452841 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R4 30849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130454821 130454821 + Silent SNP T T C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R4 30849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130463550 130463550 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R4 30849 hgsc.bcm.edu;ucsc.edu 37 3 130463485 130463487 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R5 23533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8793400 8793400 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIK3R5 23533 hgsc.bcm.edu 37 17 8791992 8791992 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3R5 23533 hgsc.bcm.edu 37 17 8791992 8791992 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3R5 23533 hgsc.bcm.edu 37 17 8792003 8792003 + Silent SNP C C G rs9915880 bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3R6 146850 broad.mit.edu 37 17 8738616 8738616 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIK3R6 146850 hgsc.bcm.edu;ucsc.edu 37 17 8722497 8722497 + Silent SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIK3R6 146850 hgsc.bcm.edu;ucsc.edu 37 17 8730539 8730539 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIKFYVE 200576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209169642 209169642 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIKFYVE 200576 hgsc.bcm.edu 37 2 209190805 209190805 + Silent SNP C C A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIKFYVE 200576 hgsc.bcm.edu;ucsc.edu 37 2 209136347 209136347 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIKFYVE 200576 hgsc.bcm.edu;ucsc.edu 37 2 209214815 209214815 + Intron SNP T T G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PILRA 29992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99997510 99997510 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PILRA 29992 broad.mit.edu;ucsc.edu 37 7 99987688 99987688 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PILRB 29990 broad.mit.edu 37 7 99943553 99943553 + 5'UTR DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PILRB 29990 broad.mit.edu 37 7 99950006 99950006 + 5'UTR SNP C T T rs13246354 byfrequency;by1000genomes TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PILRB 29990 broad.mit.edu 37 7 99965329 99965329 + 3'UTR DEL A - - rs11284139 unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PILRB 29990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99956460 99956460 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PILRB 29990 hgsc.bcm.edu 37 7 99956439 99956439 + Missense_Mutation SNP T T C rs35986051 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIM3 415116 hgsc.bcm.edu;ucsc.edu 37 22 50356427 50356428 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIN1 5300 broad.mit.edu 37 19 9960334 9960334 + 3'UTR SNP A G G novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PION 54103 hgsc.bcm.edu 37 7 76955572 76955572 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PION 54103 hgsc.bcm.edu;ucsc.edu 37 7 76959608 76959608 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP4K2A 5305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22896899 22896899 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP4K2B 8396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36935738 36935738 + Silent SNP C C A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP4K2B 8396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36943164 36943164 + Silent SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP4K2C 79837 broad.mit.edu 37 12 57995606 57995606 + Intron SNP T A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIP4K2C 79837 broad.mit.edu;hgsc.bcm.edu 37 12 57985037 57985037 + 5'UTR SNP G G C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP4K2C 79837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57995122 57995122 + Silent SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP 5304 hgsc.bcm.edu 37 7 142832380 142832380 + Silent SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIP5K1A 8394 hgsc.bcm.edu 37 1 151206687 151206687 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP5K1A 8394 hgsc.bcm.edu;ucsc.edu 37 1 151209067 151209068 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP5K1C 23396 broad.mit.edu 37 19 3651997 3651997 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIP5K1C 23396 broad.mit.edu;hgsc.bcm.edu 37 19 3651895 3651895 + Silent SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIP5K1C 23396 hgsc.bcm.edu;ucsc.edu 37 19 3641752 3641752 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIP5K1P1 206426 broad.mit.edu 37 6 7986847 7986847 + Silent SNP G A A rs197129 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIP5KL1 138429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130687392 130687392 + Missense_Mutation SNP G G C rs149767177 byfrequency;alternate_allele TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIPOX 51268 hgsc.bcm.edu;ucsc.edu 37 17 27379941 27379941 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIPSL 266971 broad.mit.edu 37 10 95719506 95719506 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIPSL 266971 broad.mit.edu 37 10 95720191 95720191 + Silent SNP A C C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIPSL 266971 broad.mit.edu 37 10 95720827 95720827 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIRT 644139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10728777 10728777 + Silent SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIRT 644139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10728814 10728814 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PISD 23761 hgsc.bcm.edu 37 22 32017820 32017820 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PISD(dist=17285) 0 broad.mit.edu;hgsc.bcm.edu 37 22 32044095 32044095 + IGR SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PISD(dist=31352) 0 broad.mit.edu;hgsc.bcm.edu 37 22 32058162 32058162 + IGR SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PISD(dist=31388) 0 broad.mit.edu;hgsc.bcm.edu 37 22 32058198 32058198 + IGR SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNB 23760 hgsc.bcm.edu;ucsc.edu 37 22 28256199 28256199 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNB 23760 hgsc.bcm.edu;ucsc.edu 37 22 28290544 28290544 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITPNM1 9600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67266179 67266179 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNM1 9600 broad.mit.edu;ucsc.edu 37 11 67265791 67265791 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PITPNM1 9600 hgsc.bcm.edu 37 11 67269466 67269466 + Silent SNP T T C novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITPNM1 9600 hgsc.bcm.edu 37 11 67269868 67269868 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITPNM2 57605 broad.mit.edu;hgsc.bcm.edu 37 12 123471023 123471023 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNM2 57605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123481921 123481921 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNM2 57605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123497230 123497232 + In_Frame_Del DEL ATA ATA - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 ATA ATA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNM2 57605 broad.mit.edu;ucsc.edu 37 12 123488978 123488978 + Silent SNP C T T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PITPNM3 83394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6386893 6386893 + Silent SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITPNM3 83394 hgsc.bcm.edu 37 17 6367535 6367535 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITPNM3 83394 hgsc.bcm.edu 37 17 6381331 6381331 + Silent SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITPNM3 83394 hgsc.bcm.edu 37 17 6441376 6441376 + Missense_Mutation SNP G G A rs28493751 bycluster;byfrequency;by1000genomes TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITRM1 10531 broad.mit.edu 37 10 3185253 3185256 + Intron DEL ATTC - - rs146381838 bycluster;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 ATTC ATTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PITRM1 10531 broad.mit.edu 37 10 3188323 3188323 + Intron DEL A - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PITRM1 10531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 3197825 3197825 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITRM1 10531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 3209166 3209166 + Nonsense_Mutation SNP A A C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITRM1 10531 hgsc.bcm.edu 37 10 3187802 3187802 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITRM1 10531 hgsc.bcm.edu 37 10 3187802 3187802 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITRM1 10531 hgsc.bcm.edu;ucsc.edu 37 10 3200259 3200259 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PITX2 5308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 111539589 111539589 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PITX3 5309 hgsc.bcm.edu 37 10 103991455 103991456 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL1 9271 broad.mit.edu 37 12 130856458 130856458 + 3'UTR DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIWIL1 9271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130839159 130839159 + Silent SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL1 9271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130847573 130847573 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL1 9271 broad.mit.edu;ucsc.edu 37 12 130845828 130845828 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PIWIL2 55124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22138976 22138976 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL2 55124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22167480 22167480 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL3 440822 hgsc.bcm.edu 37 22 25145728 25145728 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PIWIL3 440822 hgsc.bcm.edu;ucsc.edu 37 22 25131751 25131754 + Frame_Shift_Del DEL TGTG TGTG - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 TGTG TGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL3 440822 hgsc.bcm.edu;ucsc.edu 37 22 25155858 25155869 + In_Frame_Del DEL TGCTCCTCCTCT TGCTCCTCCTCT - novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TGCTCCTCCTCT TGCTCCTCCTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PIWIL4 143689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94308185 94308185 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PJA1 64219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 68382325 68382325 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PJA2 9867 broad.mit.edu 37 5 108719205 108719205 + 5'UTR SNP C A A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PJA2 9867 broad.mit.edu 37 5 108719205 108719205 + 5'UTR SNP C A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PJA2 9867 broad.mit.edu 37 5 108719205 108719205 + 5'UTR SNP C A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PJA2 9867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 108717359 108717359 + Missense_Mutation SNP C C A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1 5310 broad.mit.edu 37 16 2161786 2161786 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKD1 5310 broad.mit.edu 37 16 2168149 2168149 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKD1 5310 broad.mit.edu;hgsc.bcm.edu 37 16 2158399 2158399 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1 5310 broad.mit.edu;hgsc.bcm.edu 37 16 2158400 2158400 + Silent SNP C C A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1L1 168507 broad.mit.edu;hgsc.bcm.edu 37 7 47869026 47869026 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1L1 168507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 47873983 47873983 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1L1 168507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 47897277 47897277 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1L1 168507 hgsc.bcm.edu;ucsc.edu 37 7 47925313 47925313 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKD1L2 114780 broad.mit.edu 37 16 81183400 81183400 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKD1L2 114780 broad.mit.edu 37 16 81208318 81208318 + Intron SNP C T T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKD1L2 114780 hgsc.bcm.edu 37 16 81199538 81199538 + Intron SNP T T C rs12931227 bycluster;byfrequency;by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKD1L2 114780 hgsc.bcm.edu 37 16 81199544 81199544 + Intron SNP G G A rs12925771 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKD1L2 114780 hgsc.bcm.edu 37 16 81242151 81242151 + Silent SNP T T C rs74840013 unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKD1L2 114780 hgsc.bcm.edu 37 16 81242151 81242151 + Silent SNP T T C rs74840013 unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKD1L2 114780 hgsc.bcm.edu;ucsc.edu 37 16 81232574 81232574 + Silent SNP T T C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKD1L3 342372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71967417 71967417 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD1L3 342372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72033601 72033601 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PKD2L1 9033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102056953 102056953 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD2L1 9033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102089625 102089625 + Splice_Site SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD2L2 27039 broad.mit.edu;hgsc.bcm.edu 37 5 137257415 137257415 + Silent SNP T T G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD2L2 27039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137228267 137228267 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD2L2 27039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137230170 137230170 + Silent SNP T T G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKD2L2 27039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137275829 137275829 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKDCC 91461 broad.mit.edu 37 2 42275952 42275952 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKDREJ 10343 broad.mit.edu 37 22 46654831 46654831 + Silent SNP A G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKDREJ 10343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46655753 46655753 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKDREJ 10343 hgsc.bcm.edu 37 22 46656257 46656257 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKHD1 5314 broad.mit.edu 37 6 51915062 51915062 + Silent SNP T G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51524031 51524031 + Silent SNP A A G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51612746 51612746 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51612957 51612957 + Missense_Mutation SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51656133 51656133 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51799018 51799018 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51917916 51917916 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51935825 51935825 + Missense_Mutation SNP G G T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PKHD1 5314 hgsc.bcm.edu 37 6 51524622 51524622 + Silent SNP A A G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID PKHD1 5314 hgsc.bcm.edu;ucsc.edu 37 6 51609213 51609213 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1 5314 hgsc.bcm.edu;ucsc.edu 37 6 51747999 51747999 + Silent SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1 5314 hgsc.bcm.edu;ucsc.edu 37 6 51777241 51777241 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1 5314 hgsc.bcm.edu;ucsc.edu 37 6 51890586 51890586 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID PKHD1L1 93035 broad.mit.edu 37 8 110441591 110441591 + Missense_Mutation SNP G T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKHD1L1 93035 broad.mit.edu 37 8 110445335 110445335 + Missense_Mutation SNP G A A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110412378 110412378 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110460595 110460595 + Silent SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110471954 110471954 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110476839 110476839 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110477389 110477389 + Silent SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110487349 110487349 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110502193 110502193 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110530496 110530496 + Silent SNP T T A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKHD1L1 93035 broad.mit.edu;ucsc.edu 37 8 110432841 110432841 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKHD1L1 93035 hgsc.bcm.edu 37 8 110530539 110530539 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKHD1L1 93035 hgsc.bcm.edu;ucsc.edu 37 8 110447494 110447494 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKHD1L1 93035 hgsc.bcm.edu;ucsc.edu 37 8 110456096 110456096 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKHD1L1 93035 hgsc.bcm.edu;ucsc.edu 37 8 110464467 110464467 + Silent SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKHD1L1 93035 hgsc.bcm.edu;ucsc.edu 37 8 110464467 110464467 + Silent SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKHD1L1 93035 hgsc.bcm.edu;ucsc.edu 37 8 110523095 110523095 + Frame_Shift_Del DEL G G - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKIA 5569 hgsc.bcm.edu;ucsc.edu 37 8 79510666 79510666 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKIB 5570 broad.mit.edu 37 6 122793121 122793121 + 5'UTR DEL G - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKLR 5313 hgsc.bcm.edu;ucsc.edu 37 1 155270640 155270640 + Intron SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKM2 0 hgsc.bcm.edu 37 15 72495427 72495427 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKN1 5585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14578458 14578458 + Intron SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKN1 5585 hgsc.bcm.edu 37 19 14574545 14574545 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKN1 5585 hgsc.bcm.edu;ucsc.edu 37 19 14580588 14580588 + Silent SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKN2 5586 broad.mit.edu 37 1 89150151 89150151 + 5'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKN2 5586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89236095 89236095 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKN2 5586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89236126 89236126 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKN2 5586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89271212 89271212 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKN2 5586 hgsc.bcm.edu;ucsc.edu 37 1 89298945 89298945 + Silent SNP T T C novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKN3 29941 broad.mit.edu 37 9 131469089 131469089 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKN3 29941 broad.mit.edu;ucsc.edu 37 9 131480826 131480826 + Splice_Site SNP A C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKN3 29941 hgsc.bcm.edu;ucsc.edu 37 9 131477498 131477498 + Frame_Shift_Del DEL G G - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKNOX1 5316 broad.mit.edu 37 21 44438157 44438158 + Intron INS - AAAA AAAA novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKNOX1 5316 broad.mit.edu 37 21 44438157 44438158 + Intron INS - AAAA AAAA novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKNOX1 5316 broad.mit.edu 37 21 44450371 44450380 + 3'UTR DEL GTGTGTGTGT - - rs112515074 unknown;alternate_allele TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 GTGTGTGTGT GTGTGTGTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKNOX1 5316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 44427621 44427621 + Silent SNP A A G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKNOX1 5316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 44448816 44448816 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKNOX2 63876 hgsc.bcm.edu 37 11 125300008 125300008 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKNOX2 63876 hgsc.bcm.edu 37 11 125300008 125300008 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKP2 5318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32949147 32949147 + Silent SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKP2 5318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32975511 32975511 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKP2 5318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32976979 32976979 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKP2 5318 hgsc.bcm.edu;ucsc.edu 37 12 32945441 32945441 + Intron SNP A A G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKP4 8502 broad.mit.edu 37 2 159515783 159515783 + Intron DEL C - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKP4 8502 broad.mit.edu 37 2 159537192 159537192 + 3'UTR SNP T G G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PKP4 8502 broad.mit.edu;hgsc.bcm.edu 37 2 159499107 159499107 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKP4 8502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 159526361 159526361 + Missense_Mutation SNP C C A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PKP4 8502 hgsc.bcm.edu;ucsc.edu 37 2 159481890 159481890 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PKP4 8502 hgsc.bcm.edu;ucsc.edu 37 2 159499100 159499101 + In_Frame_Ins INS - - GCAAGT novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G12A 81579 broad.mit.edu;hgsc.bcm.edu 37 4 110650931 110650931 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G15 23659 broad.mit.edu;hgsc.bcm.edu 37 16 68283194 68283194 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G15 23659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68283347 68283347 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G16 11145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63357820 63357820 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G2A 5320 broad.mit.edu 37 1 20302020 20302020 + 3'UTR SNP C T T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G2C 391013 hgsc.bcm.edu;ucsc.edu 37 1 20499305 20499305 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2G2F 64600 broad.mit.edu 37 1 20470069 20470069 + Silent SNP G A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G2F 64600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20466689 20466689 + Silent SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4A 5321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186839572 186839572 + Silent SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4A 5321 hgsc.bcm.edu 37 1 186916003 186916003 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2G4B 100137049 broad.mit.edu;hgsc.bcm.edu 37 15 42132809 42132809 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4B 100137049 hgsc.bcm.edu;ucsc.edu 37 15 42133008 42133008 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2G4C 8605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48608631 48608631 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4C 8605 broad.mit.edu;ucsc.edu 37 19 48613788 48613788 + 5'UTR SNP T G G rs1654377 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G4D 283748 broad.mit.edu 37 15 42363002 42363002 + Silent SNP G A A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G4D 283748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42363506 42363506 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4D 283748 broad.mit.edu;ucsc.edu 37 15 42379578 42379578 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G4D 283748 broad.mit.edu;ucsc.edu 37 15 42386652 42386652 + Silent SNP C T T rs148416017 unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G4D 283748 hgsc.bcm.edu 37 15 42363043 42363043 + Missense_Mutation SNP T T G rs74678783 bycluster;byfrequency;by1000genomes TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4E 123745 hgsc.bcm.edu 37 15 42292364 42292364 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2G4E 123745 hgsc.bcm.edu 37 15 42293414 42293414 + Missense_Mutation SNP C C T rs189961279 by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4E 123745 hgsc.bcm.edu 37 15 42302330 42302331 + In_Frame_Ins INS - - CCC novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4E 123745 hgsc.bcm.edu 37 15 42302330 42302331 + In_Frame_Ins INS - - CCC novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4E 123745 hgsc.bcm.edu 37 15 42302338 42302338 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4E 123745 hgsc.bcm.edu 37 15 42302338 42302338 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4E 123745 hgsc.bcm.edu 37 15 42302340 42302340 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2G4E 123745 hgsc.bcm.edu 37 15 42302340 42302341 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4F 255189 broad.mit.edu 37 15 42439928 42439928 + Silent SNP A C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G4F 255189 broad.mit.edu;hgsc.bcm.edu 37 15 42446347 42446347 + Silent SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4F 255189 hgsc.bcm.edu;ucsc.edu 37 15 42434287 42434287 + Silent SNP C C T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G4F 255189 hgsc.bcm.edu;ucsc.edu 37 15 42437860 42437861 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G6 8398 broad.mit.edu 37 22 38516843 38516843 + Silent SNP G A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G6 8398 broad.mit.edu 37 22 38523229 38523230 + Intron DEL CC - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G6 8398 broad.mit.edu 37 22 38536025 38536025 + Missense_Mutation SNP T G G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G6 8398 hgsc.bcm.edu;ucsc.edu 37 22 38509556 38509556 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2G7 7941 broad.mit.edu 37 6 46672213 46672213 + 3'UTR SNP T A A rs112939713 unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2G7 7941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46684241 46684241 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLA2G7 7941 hgsc.bcm.edu;ucsc.edu 37 6 46675800 46675800 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLA2R1 22925 broad.mit.edu 37 2 160798242 160798242 + 3'UTR SNP G T T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLA2R1 22925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160813103 160813103 + Silent SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAC2 0 hgsc.bcm.edu;ucsc.edu 37 19 5561289 5561289 + 3'UTR SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAC4 191585 broad.mit.edu 37 21 42550961 42550961 + 3'UTR SNP G T T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLAC4 191585 broad.mit.edu 37 21 42551343 42551343 + Silent SNP G C C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLAC4 191585 broad.mit.edu 37 21 42551676 42551677 + Translation_Start_Site INS - A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLAC4 191585 hgsc.bcm.edu 37 21 42551103 42551104 + Frame_Shift_Del INS - - C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAC4 191585 hgsc.bcm.edu 37 21 42551425 42551425 + Missense_Mutation SNP C C G rs5019195 unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAC4 191585 hgsc.bcm.edu 37 21 42551425 42551425 + Missense_Mutation SNP C C G rs5019195 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAC4 191585 hgsc.bcm.edu 37 21 42551433 42551433 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAC8L1 153770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145477733 145477733 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAC8L1 153770 hgsc.bcm.edu;ucsc.edu 37 5 145483813 145483813 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAC9 219348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 81904026 81904026 + Silent SNP G G C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAG1 5324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57080032 57080032 + Silent SNP G G T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAG1 5324 hgsc.bcm.edu 37 8 57079842 57079842 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAG1 5324 hgsc.bcm.edu;ucsc.edu 37 8 57080005 57080005 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAGL2 5326 broad.mit.edu 37 20 30782872 30782873 + 3'UTR INS - G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLAGL2 5326 broad.mit.edu 37 20 30784139 30784139 + 3'UTR DEL T - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLAGL2 5326 broad.mit.edu;hgsc.bcm.edu 37 20 30784297 30784297 + Silent SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAGL2 5326 broad.mit.edu;hgsc.bcm.edu 37 20 30784502 30784502 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAGL2 5326 hgsc.bcm.edu 37 20 30785078 30785078 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAT 5327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 42036456 42036456 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAT 5327 hgsc.bcm.edu;ucsc.edu 37 8 42046557 42046557 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAU 5328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75673067 75673067 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAU 5328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75675037 75675037 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAU 5328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75676303 75676303 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAU 5328 hgsc.bcm.edu 37 10 75675058 75675058 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAUR 5329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44160640 44160640 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLAUR 5329 hgsc.bcm.edu 37 19 44153251 44153251 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLAUR 5329 hgsc.bcm.edu 37 19 44159685 44159686 + Frame_Shift_Del INS - - T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLB1 151056 broad.mit.edu;hgsc.bcm.edu 37 2 28816933 28816933 + Intron SNP C C T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLB1 151056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 28752200 28752200 + Silent SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLB1 151056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 28752601 28752601 + Silent SNP G G A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLB1 151056 hgsc.bcm.edu;ucsc.edu 37 2 28752187 28752187 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLB1 151056 hgsc.bcm.edu;ucsc.edu 37 2 28812901 28812901 + Silent SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLB1 151056 hgsc.bcm.edu;ucsc.edu 37 2 28841198 28841198 + Intron SNP T T C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLB1 151056 hgsc.bcm.edu;ucsc.edu 37 2 28851970 28851970 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLBD1 79887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14656715 14656715 + Silent SNP A A G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLBD1 79887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14689601 14689601 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB1 23236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 8698474 8698474 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB1 23236 hgsc.bcm.edu;ucsc.edu 37 20 8713925 8713925 + Silent SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCB2 5330 broad.mit.edu;hgsc.bcm.edu 37 15 40594520 40594520 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PLCB2 5330 hgsc.bcm.edu;ucsc.edu 37 15 40591379 40591379 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCB3 5331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64028903 64028903 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB3 5331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64029901 64029901 + Silent SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB4 5332 broad.mit.edu;hgsc.bcm.edu 37 20 9318701 9318701 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB4 5332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 9374306 9374306 + Silent SNP G G T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB4 5332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 9382178 9382178 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCB4 5332 hgsc.bcm.edu 37 20 9288474 9288474 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCB4 5332 hgsc.bcm.edu 37 20 9459569 9459569 + Missense_Mutation SNP C C T rs145676690 bycluster;byfrequency;by1000genomes TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCD3 113026 hgsc.bcm.edu 37 17 43192549 43192550 + Frame_Shift_Ins INS - - C rs75518897 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCD4 84812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219487602 219487602 + Splice_Site SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCD4 84812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219498885 219498885 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCD4 84812 hgsc.bcm.edu;ucsc.edu 37 2 219500531 219500531 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCD4 84812 hgsc.bcm.edu;ucsc.edu 37 2 219501273 219501273 + Silent SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCE1 51196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 95791726 95791726 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCE1 51196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96043555 96043555 + Silent SNP C C T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCE1 51196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96058297 96058298 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCE1 51196 hgsc.bcm.edu;ucsc.edu 37 10 95791806 95791806 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCG1 5335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39796506 39796506 + Silent SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCG1 5335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39798840 39798840 + Silent SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PLCG1 5335 hgsc.bcm.edu;ucsc.edu 37 20 39802104 39802104 + Silent SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCG2 5336 broad.mit.edu 37 16 81819486 81819486 + Intron SNP C G G rs4354929 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLCG2 5336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 81954855 81954855 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCG2 5336 hgsc.bcm.edu 37 16 81929409 81929409 + Splice_Region SNP T T A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCG2 5336 hgsc.bcm.edu 37 16 81934322 81934322 + Silent SNP C C G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCH1 23007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 155212209 155212209 + Silent SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCH1 23007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 155215167 155215167 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCH1 23007 broad.mit.edu;ucsc.edu 37 3 155199834 155199834 + Silent SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLCH2 9651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2435907 2435907 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCH2 9651 hgsc.bcm.edu 37 1 2421272 2421272 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCH2 9651 hgsc.bcm.edu 37 1 2431088 2431088 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLCH2 9651 hgsc.bcm.edu;ucsc.edu 37 1 2431075 2431075 + Intron SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCL1 5334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 198949407 198949407 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCL2 23228 hgsc.bcm.edu 37 3 17052987 17052988 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLCXD3 345557 broad.mit.edu 37 5 41312744 41312748 + 3'UTR DEL CCCTC - - novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 CCCTC CCCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLD1 5337 broad.mit.edu;hgsc.bcm.edu 37 3 171377081 171377081 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD1 5337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 171323102 171323102 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD2 5338 hgsc.bcm.edu 37 17 4711105 4711105 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLD2 5338 hgsc.bcm.edu;ucsc.edu 37 17 4722784 4722784 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLD3 23646 broad.mit.edu 37 19 40873490 40873490 + Intron DEL A - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLD3 23646 broad.mit.edu;hgsc.bcm.edu 37 19 40873738 40873738 + Nonsense_Mutation SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD3 23646 hgsc.bcm.edu;ucsc.edu 37 19 40876046 40876046 + Nonsense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD3 23646 hgsc.bcm.edu;ucsc.edu 37 19 40876075 40876075 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD4 122618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105396381 105396381 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD5 200150 broad.mit.edu;hgsc.bcm.edu 37 1 242253369 242253369 + Silent SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD5 200150 broad.mit.edu;hgsc.bcm.edu 37 1 242428747 242428747 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLD5 200150 hgsc.bcm.edu 37 1 242294600 242294600 + Intron SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLDN 0 broad.mit.edu 37 15 45879557 45879557 + 5'UTR SNP G C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEC 5339 broad.mit.edu;hgsc.bcm.edu 37 8 144992443 144992443 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEC 5339 broad.mit.edu;hgsc.bcm.edu 37 8 144996079 144996079 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEC 5339 broad.mit.edu;hgsc.bcm.edu 37 8 144999885 144999885 + Silent SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEC 5339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144995815 144995815 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEC 5339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145007369 145007369 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEC 5339 broad.mit.edu 37 8 144995868 144995868 + Silent SNP A G G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEC 5339 broad.mit.edu 37 8 145004392 145004392 + Silent SNP G A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEC 5339 broad.mit.edu;ucsc.edu 37 8 144991673 144991673 + Nonsense_Mutation SNP C A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEC 5339 hgsc.bcm.edu 37 8 144996408 144996408 + Silent SNP T T G rs11778026 bycluster;byfrequency;byhapmap;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEC 5339 hgsc.bcm.edu 37 8 145001221 145001221 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEC 5339 hgsc.bcm.edu;ucsc.edu 37 8 145000956 145000956 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEK 5341 broad.mit.edu 37 2 68623036 68623036 + 3'UTR SNP G T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHA1 59338 hgsc.bcm.edu 37 10 124159913 124159913 + Splice_Region SNP C C T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA1 59338 hgsc.bcm.edu;ucsc.edu 37 10 124189325 124189325 + Silent SNP T T A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA2 59339 broad.mit.edu 37 8 38827144 38827144 + Nonsense_Mutation SNP C A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHA2 59339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38775521 38775521 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA2 59339 hgsc.bcm.edu 37 8 38827186 38827186 + Frame_Shift_Del DEL C C - rs139752038 bycluster;by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA2 59339 hgsc.bcm.edu;ucsc.edu 37 8 38775478 38775479 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA2 59339 hgsc.bcm.edu;ucsc.edu 37 8 38814852 38814852 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA3 65977 hgsc.bcm.edu 37 2 179349624 179349624 + Intron SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA3 65977 hgsc.bcm.edu 37 2 179352054 179352054 + Intron SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA3 65977 hgsc.bcm.edu;ucsc.edu 37 2 179368497 179368497 + Silent SNP C C T rs139167699 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA4 57664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49362923 49362923 + Silent SNP A A C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA5 54477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 19410396 19410396 + Silent SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA5 54477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 19436378 19436378 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA5 54477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 19514587 19514587 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA5 54477 hgsc.bcm.edu 37 12 19440437 19440437 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA6 22874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204230552 204230552 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA6 22874 broad.mit.edu;ucsc.edu 37 1 204236640 204236640 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHA6 22874 hgsc.bcm.edu 37 1 204210581 204210581 + Silent SNP C C T rs151293148 bycluster;byfrequency;by1000genomes TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA6 22874 hgsc.bcm.edu 37 1 204242841 204242841 + Silent SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA6 22874 hgsc.bcm.edu;ucsc.edu 37 1 204218082 204218082 + Missense_Mutation SNP G G T rs148948923 unknown;alternate_allele TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA6 22874 hgsc.bcm.edu;ucsc.edu 37 1 204228767 204228767 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA7 144100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 16838611 16838611 + Silent SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA7 144100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 16838838 16838838 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA7 144100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 16847952 16847952 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA7 144100 hgsc.bcm.edu 37 11 16838758 16838758 + Silent SNP C C G rs35497498 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA7 144100 hgsc.bcm.edu 37 11 16876457 16876457 + Silent SNP C C T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHA7 144100 hgsc.bcm.edu;ucsc.edu 37 11 16816509 16816509 + Silent SNP C C T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHA9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 45568052 45568052 + RNA SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHB1 58473 broad.mit.edu 37 11 73372729 73372729 + 3'UTR SNP G T T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHB1 58473 hgsc.bcm.edu 37 11 73362890 73362890 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHB2 55041 hgsc.bcm.edu;ucsc.edu 37 2 131883458 131883458 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG1 57480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151153138 151153138 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG1 57480 hgsc.bcm.edu 37 6 151161484 151161484 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG2 64857 broad.mit.edu 37 19 39915952 39915952 + 3'UTR DEL C - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHG2 64857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39913384 39913384 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG2 64857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39915872 39915872 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG2 64857 hgsc.bcm.edu 37 19 39906985 39906985 + Splice_Region SNP T T C rs10401595 bycluster;byfrequency;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG2 64857 hgsc.bcm.edu 37 19 39911720 39911720 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG2 64857 hgsc.bcm.edu;ucsc.edu 37 19 39911309 39911309 + Intron SNP G G A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG2 64857 hgsc.bcm.edu;ucsc.edu 37 19 39914662 39914671 + Frame_Shift_Del DEL CCTCCAGGTG CCTCCAGGTG - novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 CCTCCAGGTG CCTCCAGGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG3 26030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65204095 65204095 + Splice_Site SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG3 26030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65208079 65208079 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG3 26030 hgsc.bcm.edu;ucsc.edu 37 14 65207861 65207861 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG4 25894 broad.mit.edu;hgsc.bcm.edu 37 16 67318759 67318759 + Silent SNP G G A novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG4 25894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67318935 67318935 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG4B 153478 hgsc.bcm.edu 37 5 145006 145006 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG4B 153478 hgsc.bcm.edu 37 5 155056 155056 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG5 57449 broad.mit.edu 37 1 6526203 6526210 + 3'UTR DEL CGTGCTCT - - rs149190641 by1000genomes TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 CGTGCTCT CGTGCTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHG5 57449 broad.mit.edu 37 1 6527729 6527729 + Intron SNP T G G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHG5 57449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6532596 6532596 + Silent SNP C C G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHG6 55200 hgsc.bcm.edu 37 12 6436888 6436888 + Silent SNP G G A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG7 440107 broad.mit.edu;ucsc.edu 37 12 93134670 93134670 + Silent SNP T C C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHG7 440107 hgsc.bcm.edu 37 12 93135275 93135275 + Silent SNP T T C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHG7 440107 hgsc.bcm.edu 37 12 93147906 93147906 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH1 57475 broad.mit.edu 37 14 68038462 68038462 + Intron SNP C G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHH1 57475 broad.mit.edu 37 14 68042292 68042293 + Intron INS - AT AT novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHH1 57475 broad.mit.edu 37 14 68048655 68048655 + Intron SNP C G G novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHH1 57475 broad.mit.edu 37 14 68054176 68054176 + 3'UTR DEL T - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHH1 57475 broad.mit.edu;hgsc.bcm.edu 37 14 68038960 68038960 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHH1 57475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68047714 68047714 + Silent SNP T T A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHH1 57475 hgsc.bcm.edu;ucsc.edu 37 14 68040063 68040063 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH1 57475 hgsc.bcm.edu;ucsc.edu 37 14 68045252 68045252 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH2 130271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43924441 43924441 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHH2 130271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43934682 43934682 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHH2 130271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43973091 43973091 + Silent SNP A A T novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHH2 130271 hgsc.bcm.edu 37 2 43991494 43991494 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH2 130271 hgsc.bcm.edu 37 2 43991495 43991495 + Silent SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH2 130271 hgsc.bcm.edu;ucsc.edu 37 2 43939458 43939458 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHH2 130271 hgsc.bcm.edu;ucsc.edu 37 2 43969891 43969891 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH2 130271 hgsc.bcm.edu;ucsc.edu 37 2 43973017 43973017 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHH3 79990 broad.mit.edu 37 17 40820279 40820279 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHH3 79990 hgsc.bcm.edu 37 17 40825443 40825443 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHJ1 55111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2234235 2234235 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHM1 9842 broad.mit.edu;hgsc.bcm.edu 37 17 43552739 43552739 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHM1 9842 hgsc.bcm.edu;ucsc.edu 37 17 43517526 43517526 + RNA SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHM1P 440456 broad.mit.edu 37 17 62801048 62801048 + 5'UTR SNP C G G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHM2 23207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16058448 16058448 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHM3 389072 broad.mit.edu 37 2 208692717 208692717 + 3'UTR DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHM3 389072 broad.mit.edu 37 2 208866412 208866412 + 5'UTR SNP G A A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLEKHM3 389072 hgsc.bcm.edu 37 2 208795801 208795801 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHN1 84069 hgsc.bcm.edu 37 1 907445 907445 + Splice_Region SNP T T C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLEKHO2 80301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65157277 65157277 + Silent SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLEKHO2 80301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65157582 65157582 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161139402 161139402 + Silent SNP T T A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161152232 161152232 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161152841 161152841 + Silent SNP A A G rs150227219 unknown;alternate_allele TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 hgsc.bcm.edu;ucsc.edu 37 6 161134106 161134106 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 hgsc.bcm.edu;ucsc.edu 37 6 161135849 161135849 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLG 5340 hgsc.bcm.edu;ucsc.edu 37 6 161139413 161139413 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 hgsc.bcm.edu;ucsc.edu 37 6 161139489 161139489 + Splice_Site SNP G G T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLG 5340 hgsc.bcm.edu;ucsc.edu 37 6 161155095 161155095 + Silent SNP C C T rs113153850 unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLGLB2 5342 broad.mit.edu 37 2 87238234 87238234 + 3'UTR SNP C A A rs74446920 unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLIN1 5346 hgsc.bcm.edu 37 15 90210173 90210173 + Silent SNP G G A rs151265993 unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLIN1 5346 hgsc.bcm.edu 37 15 90212792 90212792 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLIN2 123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 19116637 19116637 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4510945 4510945 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu 37 19 4511479 4511479 + Silent SNP A A T rs138464610 by1000genomes;alternate_allele TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu 37 19 4511479 4511479 + Silent SNP A A T rs138464610 by1000genomes;alternate_allele TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu 37 19 4511539 4511539 + Missense_Mutation SNP C C G rs111868968 bycluster;byfrequency;alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu 37 19 4512945 4512945 + Missense_Mutation SNP C C T rs75031432 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu 37 19 4512946 4512946 + Silent SNP A A G rs79662071 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4511491 4511491 + Silent SNP A A G rs10423324 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4512636 4512636 + Missense_Mutation SNP A A C rs140230284 by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4512890 4512890 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4512890 4512890 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLIN4 729359 hgsc.bcm.edu 37 19 4510615 4510615 + Silent SNP G G A rs140509702 by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLIN4 729359 hgsc.bcm.edu 37 19 4511365 4511365 + Silent SNP C C G rs116973517 byfrequency;by1000genomes TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLIN4 729359 hgsc.bcm.edu 37 19 4511746 4511746 + Missense_Mutation SNP A A T rs62115192 bycluster;by1000genomes TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLK1S1 55857 broad.mit.edu 37 20 21143043 21143043 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLK1S1 55857 broad.mit.edu 37 20 21143767 21143767 + Frame_Shift_Del DEL A - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLK3 1263 broad.mit.edu 37 1 45269620 45269620 + Frame_Shift_Del DEL C - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLK3 1263 hgsc.bcm.edu 37 1 45268708 45268708 + Silent SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLK4 10733 broad.mit.edu 37 4 128819987 128819987 + 3'UTR DEL A - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLK5P 0 broad.mit.edu 37 19 1525005 1525005 + Intron DEL T - - rs146023050 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLOD1 5351 hgsc.bcm.edu 37 1 12010478 12010478 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLOD2 5352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 145788846 145788846 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLOD2 5352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 145799589 145799589 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLOD2 5352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 145820619 145820619 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLOD2 5352 hgsc.bcm.edu;ucsc.edu 37 3 145804638 145804638 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLOD3 8985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100856398 100856398 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLOD3 8985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100860059 100860059 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLOD3 8985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100860060 100860060 + Silent SNP C C A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLP1 5354 hgsc.bcm.edu;ucsc.edu 37 X 103031919 103031919 + 5'UTR SNP A A T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLS1 5357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142430381 142430381 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLS3 5358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 114864223 114864223 + Silent SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLS3 5358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 114880823 114880823 + Silent SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLSCR4 57088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 145914562 145914562 + Missense_Mutation SNP G G C rs149266233 unknown;alternate_allele TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLSCR5 389158 broad.mit.edu 37 3 146311927 146311927 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLTP 5360 broad.mit.edu 37 20 44534935 44534935 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLTP 5360 broad.mit.edu;hgsc.bcm.edu 37 20 44531163 44531163 + Silent SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLTP 5360 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44538612 44538612 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLVAP 83483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17487791 17487791 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXDC1 57125 broad.mit.edu 37 17 37265509 37265509 + Nonsense_Mutation SNP G A A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXDC2 84898 broad.mit.edu;hgsc.bcm.edu 37 10 20465933 20465933 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXDC2 84898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 20106053 20106053 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA1 5361 broad.mit.edu 37 3 126707544 126707544 + Silent SNP T G G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA1 5361 broad.mit.edu 37 3 126707544 126707544 + Silent SNP T G G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA1 5361 broad.mit.edu 37 3 126733641 126733641 + Nonsense_Mutation SNP C A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA1 5361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 126708047 126708047 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA1 5361 broad.mit.edu;ucsc.edu 37 3 126707667 126707667 + Silent SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA2 5362 broad.mit.edu 37 1 208391298 208391298 + 5'UTR SNP C T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA2 5362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 208207921 208207921 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA2 5362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 208215470 208215470 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA3 55558 hgsc.bcm.edu 37 X 153692792 153692792 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNA3 55558 hgsc.bcm.edu 37 X 153699461 153699461 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNA3 55558 hgsc.bcm.edu;ucsc.edu 37 X 153699964 153699964 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNA4 91584 broad.mit.edu 37 7 131810378 131810378 + 3'UTR DEL T - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA4 91584 broad.mit.edu 37 7 132193205 132193205 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131866156 131866156 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131895713 131895713 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131982903 131982903 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 132192713 132192713 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNA4 91584 broad.mit.edu;ucsc.edu 37 7 132169702 132169702 + Intron SNP G A A rs112214523 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNA4 91584 hgsc.bcm.edu;ucsc.edu 37 7 132062859 132062859 + Intron SNP T T C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNB1 5364 broad.mit.edu 37 3 48461366 48461366 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNB1 5364 broad.mit.edu 37 3 48463743 48463743 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXNB1 5364 broad.mit.edu;hgsc.bcm.edu 37 3 48461035 48461035 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNB1 5364 hgsc.bcm.edu 37 3 48460339 48460339 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNB1 5364 hgsc.bcm.edu;ucsc.edu 37 3 48457028 48457028 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNB2 23654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50717397 50717397 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNB2 23654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50724518 50724518 + Silent SNP G G T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNB2 23654 hgsc.bcm.edu 37 22 50722134 50722134 + Missense_Mutation SNP T T C rs11547731 bycluster;by1000genomes TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNB2 23654 hgsc.bcm.edu;ucsc.edu 37 22 50720489 50720489 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PLXNC1 10154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94642074 94642074 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXNC1 10154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94673352 94673352 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXND1 23129 broad.mit.edu 37 3 129275042 129275042 + 3'UTR SNP G A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PLXND1 23129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129276046 129276046 + Silent SNP G G T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXND1 23129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129286540 129286540 + Splice_Site SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXND1 23129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129324730 129324730 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXND1 23129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129324804 129324804 + Silent SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PLXND1 23129 broad.mit.edu;ucsc.edu 37 3 129308262 129308262 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PM20D1 148811 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205819199 205819199 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PM20D2 135293 broad.mit.edu 37 6 89872000 89872001 + 3'UTR INS - A A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PM20D2 135293 broad.mit.edu;ucsc.edu 37 6 89871594 89871594 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PM20D2 135293 hgsc.bcm.edu 37 6 89855893 89855893 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMCH(dist=104306) 0 hgsc.bcm.edu;ucsc.edu 37 12 102695920 102695920 + IGR SNP C C T rs143418014 by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMEPA1 56937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56227136 56227136 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMEPA1 56937 hgsc.bcm.edu 37 20 56236894 56236894 + Intron SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PMEPA1 56937 hgsc.bcm.edu 37 20 56237059 56237059 + Intron SNP G G A rs203369 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMEPA1 56937 hgsc.bcm.edu 37 20 56237066 56237066 + Intron SNP T T C rs368796 bycluster TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PMEPA1 56937 hgsc.bcm.edu 37 20 56237066 56237066 + Intron SNP T T C rs368796 bycluster TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PMEPA1(dist=389517) 0 hgsc.bcm.edu;ucsc.edu 37 20 56676058 56676058 + IGR SNP A A G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMFBP1 83449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72158692 72158692 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PML 5371 broad.mit.edu 37 15 74325822 74325822 + Intron SNP G A A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PML 5371 broad.mit.edu 37 15 74326934 74326934 + Intron SNP A C C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PML 5371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 74336686 74336686 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PML 5371 hgsc.bcm.edu 37 15 74328116 74328116 + Missense_Mutation SNP A A G rs743580 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PML 5371 hgsc.bcm.edu 37 15 74328141 74328141 + Missense_Mutation SNP G G T rs743581 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PMM1 5372 broad.mit.edu 37 22 41973272 41973272 + 3'UTR SNP G T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PMM1 5372 hgsc.bcm.edu 37 22 41973900 41973900 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PMP22 5376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15142905 15142905 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMPCA 23203 broad.mit.edu 37 9 139305134 139305134 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PMPCB 9512 broad.mit.edu 37 7 102952754 102952754 + 3'UTR SNP T A A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PMPCB 9512 broad.mit.edu;hgsc.bcm.edu 37 7 102949606 102949606 + Intron SNP A A T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMS1 5378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 190738266 190738266 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMS2 5395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6029494 6029494 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMS2 5395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6042192 6042192 + Silent SNP A A G rs35650314 unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMS2 5395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6048687 6048687 + RNA SNP G G C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PMS2 5395 hgsc.bcm.edu 37 7 6042131 6042131 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PMS2L11 0 broad.mit.edu 37 7 76669152 76669152 + Intron SNP A C C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PMS2L4 0 broad.mit.edu 37 7 66752653 66752654 + Intron INS - T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PMVK 10654 broad.mit.edu 37 1 154904889 154904889 + Missense_Mutation SNP A T T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNCK 139728 broad.mit.edu 37 X 152936765 152936765 + Missense_Mutation SNP C A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNCK 139728 hgsc.bcm.edu;ucsc.edu 37 X 152936428 152936428 + Silent SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNKD(dist=3681) 0 hgsc.bcm.edu;ucsc.edu 37 2 219215197 219215197 + IGR SNP C C G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNKP 11284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50364761 50364761 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNLDC1 154197 broad.mit.edu 37 6 160240368 160240368 + Missense_Mutation SNP G A A rs138386704 unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNLDC1 154197 hgsc.bcm.edu;ucsc.edu 37 6 160240086 160240086 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNLIP 5406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118305651 118305651 + Splice_Site SNP G G C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNLIP 5406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118318744 118318744 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNLIP 5406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118321017 118321017 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNLIPRP1 5407 broad.mit.edu;hgsc.bcm.edu 37 10 118352110 118352110 + Intron SNP T T C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNLIPRP2 5408 hgsc.bcm.edu 37 10 118383462 118383463 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNLIPRP3 119548 hgsc.bcm.edu;ucsc.edu 37 10 118220558 118220558 + Missense_Mutation SNP G G T rs114674677 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNLIPRP3 119548 hgsc.bcm.edu;ucsc.edu 37 10 118228715 118228715 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNMA1 9240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74180283 74180283 + Silent SNP A A G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNMA1 9240 hgsc.bcm.edu 37 14 74179715 74179716 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNMA3 29944 broad.mit.edu 37 X 152226515 152226515 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNMA5 114824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152159503 152159503 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNMT 5409 hgsc.bcm.edu 37 17 37826360 37826360 + Silent SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNN 5411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 39645318 39645318 + Silent SNP T T C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNN 5411 hgsc.bcm.edu 37 14 39650383 39650383 + Silent SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNO1 56902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 68401898 68401898 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNP 4860 broad.mit.edu;hgsc.bcm.edu 37 14 20940624 20940624 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA1 285848 broad.mit.edu 37 6 36259314 36259314 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNPLA3 80339 broad.mit.edu 37 22 44342402 44342402 + 3'UTR SNP A G G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNPLA3 80339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 44322959 44322959 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA3 80339 hgsc.bcm.edu;ucsc.edu 37 22 44322980 44322980 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNPLA4 8228 broad.mit.edu;hgsc.bcm.edu 37 X 7889834 7889834 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA6 10908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7605595 7605595 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA6 10908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7614966 7614966 + Silent SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA6 10908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7615512 7615512 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA7 375775 broad.mit.edu;ucsc.edu 37 9 140379177 140379178 + Frame_Shift_Ins INS - A A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNPLA7 375775 hgsc.bcm.edu 37 9 140416146 140416146 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNPLA7 375775 hgsc.bcm.edu;ucsc.edu 37 9 140375478 140375478 + Splice_Region SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PNPLA8 50640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108143077 108143077 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA8 50640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108155092 108155092 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNPLA8 50640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108155935 108155935 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PNRC1 10957 broad.mit.edu 37 6 89790527 89790527 + 5'UTR SNP A T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PNRC1 10957 hgsc.bcm.edu 37 6 89793882 89793882 + Silent SNP A A G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POC1B 282809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 89885726 89885726 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POC1B 282809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 89885862 89885862 + Silent SNP A A G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POC1B 282809 hgsc.bcm.edu;ucsc.edu 37 12 89865497 89865498 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POC1B-GALNT4 100528030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 89917147 89917147 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POC1B-GALNT4 100528030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 89917616 89917616 + Silent SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POC5 134359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 74981284 74981284 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POC5 134359 broad.mit.edu 37 5 74981058 74981058 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PODN 127435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53535790 53535790 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PODNL1 79883 broad.mit.edu 37 19 14043756 14043756 + Frame_Shift_Del DEL A - - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PODNL1 79883 hgsc.bcm.edu 37 19 14046562 14046562 + Missense_Mutation SNP G G C rs151337979 unknown;alternate_allele TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PODXL2 50512 hgsc.bcm.edu;ucsc.edu 37 3 127390442 127390442 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PODXL 5420 broad.mit.edu 37 7 131241030 131241035 + In_Frame_Del DEL GGCGAC - - rs11277659 unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 GGCGAC GGCGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PODXL 5420 broad.mit.edu 37 7 131241030 131241035 + In_Frame_Del DEL GGCGAC - - rs11277659 unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 GGCGAC GGCGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PODXL 5420 broad.mit.edu;hgsc.bcm.edu 37 7 131194125 131194125 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PODXL 5420 broad.mit.edu;hgsc.bcm.edu 37 7 131194328 131194328 + Silent SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PODXL 5420 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131191353 131191353 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PODXL 5420 hgsc.bcm.edu 37 7 131241055 131241055 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POF1B 79983 broad.mit.edu;hgsc.bcm.edu 37 X 84634493 84634493 + 5'UTR SNP T T A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POFUT2 23275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46689908 46689908 + Silent SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POGK 57645 broad.mit.edu;hgsc.bcm.edu 37 1 166816822 166816822 + Silent SNP C C G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POGK 57645 hgsc.bcm.edu 37 1 166818327 166818327 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POGK 57645 hgsc.bcm.edu 37 1 166818812 166818812 + Silent SNP G G T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POGZ 23126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151380970 151380970 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POGZ 23126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151400320 151400320 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POGZ 23126 hgsc.bcm.edu 37 1 151377553 151377553 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLA1 5422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24735484 24735484 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLB 5423 hgsc.bcm.edu 37 8 42196541 42196541 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLD1 5424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50905132 50905132 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLD1 5424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50905747 50905747 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLD1 5424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50906786 50906786 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLD1 5424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50918766 50918766 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLD3 10714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74340306 74340306 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLD4 57804 broad.mit.edu 37 11 67119428 67119428 + 3'UTR SNP A G G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLDIP2 26073 broad.mit.edu 37 17 26681591 26681591 + Frame_Shift_Del DEL A - - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLDIP2 26073 broad.mit.edu 37 17 26684390 26684391 + Splice_Site INS - C C rs11448856 bycluster;by1000genomes TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLDIP2 26073 broad.mit.edu 37 17 26684390 26684391 + Splice_Site INS - C C rs11448856 bycluster;by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLDIP2 26073 broad.mit.edu;hgsc.bcm.edu 37 17 26675106 26675106 + 3'UTR SNP C C G rs3093715 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLDIP2 26073 hgsc.bcm.edu 37 17 26684390 26684391 + Frame_Shift_Ins INS - - C rs11448856 bycluster;by1000genomes TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLDIP2 26073 hgsc.bcm.edu 37 17 26684392 26684392 + Missense_Mutation SNP T T C rs55887815 unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLDIP3 84271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42992339 42992339 + Silent SNP G G T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLDIP3 84271 hgsc.bcm.edu 37 22 42988071 42988071 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLDIP3 84271 hgsc.bcm.edu;ucsc.edu 37 22 42992326 42992326 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLE2 5427 broad.mit.edu;hgsc.bcm.edu 37 14 50110308 50110308 + 3'UTR SNP C C A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLE2 5427 broad.mit.edu;ucsc.edu 37 14 50136257 50136257 + Silent SNP G A A rs139370609 bycluster;byfrequency;by1000genomes TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLE2 5427 hgsc.bcm.edu;ucsc.edu 37 14 50131848 50131848 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLE3 54107 broad.mit.edu;hgsc.bcm.edu 37 9 116171064 116171064 + RNA SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLE 5426 broad.mit.edu 37 12 133201151 133201151 + 3'UTR SNP C T T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133219900 133219900 + Missense_Mutation SNP G G C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133220012 133220012 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133226298 133226298 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133233985 133233985 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLG2 11232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62474074 62474074 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLG2 11232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62479086 62479086 + Missense_Mutation SNP T T C rs146731596 unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLG2 11232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62481972 62481972 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLG2 11232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62492539 62492539 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLG 5428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89864148 89864148 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLG 5428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89869918 89869918 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLH 5429 broad.mit.edu 37 6 43554938 43554938 + Intron SNP T G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLH 5429 broad.mit.edu 37 6 43554942 43554942 + Intron SNP A G G novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLH 5429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43571729 43571729 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLH 5429 hgsc.bcm.edu;ucsc.edu 37 6 43550136 43550136 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLH 5429 hgsc.bcm.edu;ucsc.edu 37 6 43550779 43550779 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLH 5429 hgsc.bcm.edu;ucsc.edu 37 6 43581424 43581425 + In_Frame_Ins INS - - TGT novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLI 11201 broad.mit.edu 37 18 51797526 51797527 + Intron INS - AAAG AAAG rs34689541 bycluster;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLI 11201 broad.mit.edu 37 18 51823584 51823584 + 3'UTR DEL C - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLI 11201 broad.mit.edu 37 18 51824236 51824236 + 3'UTR DEL G - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLI 11201 broad.mit.edu;ucsc.edu 37 18 51809261 51809261 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLI 11201 hgsc.bcm.edu 37 18 51795958 51795960 + In_Frame_Del DEL CGA CGA - rs10584411 bycluster;by1000genomes TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLI 11201 hgsc.bcm.edu 37 18 51795958 51795960 + In_Frame_Del DEL CGA CGA - rs10584411 bycluster;by1000genomes TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLI 11201 hgsc.bcm.edu;ucsc.edu 37 18 51804217 51804217 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLI 11201 hgsc.bcm.edu;ucsc.edu 37 18 51809374 51809374 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLK 51426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 74865216 74865216 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLK 51426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 74889874 74889874 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLL 27343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103345853 103345853 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLL 27343 hgsc.bcm.edu;ucsc.edu 37 10 103345150 103345150 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLM 27434 broad.mit.edu 37 7 44116318 44116318 + Intron SNP C A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLM 27434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 44113448 44113448 + Silent SNP T T C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLM 27434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 44118355 44118355 + Missense_Mutation SNP C C A rs151259046 unknown;alternate_allele TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLN 353497 broad.mit.edu 37 4 2073957 2073957 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLQ 10721 broad.mit.edu 37 3 121263752 121263752 + Silent SNP T C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLQ 10721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121187276 121187276 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLQ 10721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121207746 121207746 + Silent SNP T T A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLQ 10721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121208546 121208546 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLQ 10721 broad.mit.edu;ucsc.edu 37 3 121208173 121208173 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLQ 10721 hgsc.bcm.edu 37 3 121158955 121158955 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLQ 10721 hgsc.bcm.edu 37 3 121207099 121207099 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR1A 25885 broad.mit.edu 37 2 86292646 86292646 + Intron SNP A T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR1A 25885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86325787 86325787 + Silent SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR1A 25885 hgsc.bcm.edu 37 2 86272423 86272424 + Frame_Shift_Ins INS - - G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR1A 25885 hgsc.bcm.edu;ucsc.edu 37 2 86292438 86292438 + Missense_Mutation SNP G G C rs191928354 by1000genomes TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR1A 25885 hgsc.bcm.edu;ucsc.edu 37 2 86327173 86327173 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR1B 84172 broad.mit.edu 37 2 113333412 113333412 + 3'UTR SNP G T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR1B 84172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 113308515 113308515 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR1B 84172 hgsc.bcm.edu;ucsc.edu 37 2 113316975 113316975 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR1C 9533 hgsc.bcm.edu 37 6 43488991 43488991 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR1C 9533 hgsc.bcm.edu 37 6 43488991 43488991 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR1C 9533 hgsc.bcm.edu 37 6 43489006 43489006 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR1E 64425 broad.mit.edu 37 9 37503236 37503236 + 3'UTR SNP A C C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR1E 64425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 37500907 37500907 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR1E 64425 hgsc.bcm.edu;ucsc.edu 37 9 37495950 37495950 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 broad.mit.edu 37 17 7402879 7402881 + Intron DEL AGA - - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 AGA AGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7405412 7405412 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7415174 7415174 + Silent SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7416113 7416113 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7416181 7416181 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7417116 7417116 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 hgsc.bcm.edu 37 17 7416613 7416613 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2A 5430 hgsc.bcm.edu;ucsc.edu 37 17 7404417 7404417 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2B 5431 broad.mit.edu 37 4 57876368 57876368 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2B 5431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57860916 57860916 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2B 5431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57876947 57876947 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2B 5431 broad.mit.edu;ucsc.edu 37 4 57887152 57887152 + Missense_Mutation SNP G A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2B 5431 hgsc.bcm.edu;ucsc.edu 37 4 57873145 57873145 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR2C 5432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57503112 57503112 + Silent SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2C 5432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57503693 57503693 + Intron SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2E 5434 broad.mit.edu 37 19 1093794 1093795 + Intron DEL AG - - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2E 5434 hgsc.bcm.edu 37 19 1095357 1095357 + 5'UTR SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2F 5435 broad.mit.edu 37 22 38349736 38349736 + Translation_Start_Site SNP C A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2F 5435 broad.mit.edu 37 22 38382745 38382746 + Intron DEL TG - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2G 5436 broad.mit.edu;hgsc.bcm.edu 37 11 62529417 62529417 + Intron SNP G G T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2H 5437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184082991 184082991 + Silent SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2I 5438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36605736 36605736 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR2J3 548644 broad.mit.edu 37 7 102213039 102213039 + 5'UTR SNP T C C novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR2J4 84820 broad.mit.edu 37 7 44026251 44026251 + Missense_Mutation SNP T C C rs75823018 unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR3A 11128 hgsc.bcm.edu 37 10 79781733 79781733 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR3A 11128 hgsc.bcm.edu;ucsc.edu 37 10 79744977 79744977 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR3A 11128 hgsc.bcm.edu;ucsc.edu 37 10 79761970 79761970 + Missense_Mutation SNP G G T rs137961403 unknown;alternate_allele TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR3A 11128 hgsc.bcm.edu;ucsc.edu 37 10 79764626 79764626 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR3B 55703 broad.mit.edu 37 12 106820975 106820975 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR3B 55703 broad.mit.edu 37 12 106820975 106820975 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR3B 55703 broad.mit.edu 37 12 106820975 106820975 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR3B 55703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 106772092 106772092 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR3B 55703 hgsc.bcm.edu 37 12 106895189 106895189 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR3C 10623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145597524 145597524 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR3D 661 hgsc.bcm.edu;ucsc.edu 37 8 22105554 22105554 + Intron SNP G G C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR3D 661 hgsc.bcm.edu;ucsc.edu 37 8 22107558 22107558 + Intron SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POLR3G 10622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89781415 89781415 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR3GL 84265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145456635 145456635 + 3'UTR SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR3H 171568 broad.mit.edu 37 22 41923557 41923557 + 3'UTR SNP C T T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POLR3H 171568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41926704 41926704 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLR3K 51728 hgsc.bcm.edu 37 16 103487 103489 + In_Frame_Del DEL TGT TGT - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 TGT TGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POLRMT 5442 broad.mit.edu 37 19 632854 632854 + Frame_Shift_Del DEL C - - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121 9883 broad.mit.edu;hgsc.bcm.edu 37 7 72398925 72398925 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POM121 9883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72413614 72413614 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POM121C 100101267 broad.mit.edu 37 7 75048070 75048070 + 3'UTR SNP G T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121C 100101267 broad.mit.edu 37 7 75104426 75104426 + 5'UTR SNP A C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121C 100101267 broad.mit.edu;hgsc.bcm.edu 37 7 75066894 75066894 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POM121C 100101267 broad.mit.edu;ucsc.edu 37 7 75054987 75054987 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121C 100101267 hgsc.bcm.edu 37 7 75055733 75055733 + Silent SNP G G C rs2429596 unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POM121C 100101267 hgsc.bcm.edu 37 7 75055733 75055733 + Silent SNP G G C rs2429596 unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POM121C 100101267 hgsc.bcm.edu;ucsc.edu 37 7 75068412 75068412 + Intron SNP T T G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POM121L12 285877 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 53103958 53103958 + Silent SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POM121L8P 29797 broad.mit.edu 37 22 21643633 21643633 + Intron DEL C - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24656904 24656904 + RNA SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659578 24659578 + RNA SNP A G G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659578 24659578 + RNA SNP A G G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659591 24659591 + RNA SNP A G G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659591 24659591 + RNA SNP A G G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659591 24659591 + RNA SNP A G G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659593 24659593 + RNA SNP C T T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659593 24659593 + RNA SNP C T T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659691 24659691 + RNA SNP G A A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659734 24659734 + RNA SNP T C C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659734 24659734 + RNA SNP T C C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659734 24659734 + RNA SNP T C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24659741 24659741 + RNA SNP G A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POM121L9P 29774 broad.mit.edu 37 22 24660701 24660701 + RNA DEL A - - rs71320760 unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POMGNT1 55624 broad.mit.edu 37 1 46656513 46656513 + Intron SNP T C C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POMGNT1 55624 broad.mit.edu 37 1 46658149 46658149 + Intron SNP C A A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POMGNT1 55624 broad.mit.edu 37 1 46658993 46658993 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POMGNT1 55624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46662429 46662429 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POMP 51371 broad.mit.edu;hgsc.bcm.edu 37 13 29238707 29238707 + Splice_Site SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POMT1 10585 broad.mit.edu;ucsc.edu 37 9 134379711 134379711 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POMT1 10585 hgsc.bcm.edu 37 9 134385419 134385419 + Silent SNP C C G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POMT1 10585 hgsc.bcm.edu 37 9 134397604 134397604 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POMT2 29954 hgsc.bcm.edu;ucsc.edu 37 14 77746380 77746380 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POMT2 29954 hgsc.bcm.edu;ucsc.edu 37 14 77767444 77767445 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POMZP3 22932 broad.mit.edu 37 7 76247520 76247520 + Missense_Mutation SNP C G G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POMZP3 22932 broad.mit.edu 37 7 76247559 76247559 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PON1 5444 hgsc.bcm.edu;ucsc.edu 37 7 94935588 94935588 + Intron SNP A A T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PON3 5446 broad.mit.edu 37 7 94989187 94989187 + 3'UTR SNP G C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PON3 5446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94993300 94993300 + Silent SNP C C A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PON3 5446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 95019500 95019500 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PON3 5446 hgsc.bcm.edu;ucsc.edu 37 7 94991745 94991745 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POP5 51367 hgsc.bcm.edu;ucsc.edu 37 12 121017118 121017118 + 3'UTR SNP G G C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POP7 10248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100304462 100304462 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POP7 10248 hgsc.bcm.edu 37 7 100304542 100304542 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POP7 10248 hgsc.bcm.edu 37 7 100304816 100304816 + Silent SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POPDC2 64091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119367299 119367299 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POPDC2 64091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119378938 119378938 + Silent SNP G G A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POR 5447 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 75611556 75611556 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POR 5447 hgsc.bcm.edu 37 7 75614139 75614139 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POR 5447 hgsc.bcm.edu;ucsc.edu 37 7 75615694 75615695 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PORCN 64840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48378842 48378842 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POSTN 10631 broad.mit.edu;hgsc.bcm.edu 37 13 38137418 38137418 + 3'UTR SNP T T A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POSTN 10631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38154095 38154095 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POSTN 10631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38162097 38162097 + Silent SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POSTN 10631 hgsc.bcm.edu;ucsc.edu 37 13 38143504 38143504 + Silent SNP G G T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POT1 25913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 124487019 124487019 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POT1 25913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 124493109 124493109 + Silent SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POT1 25913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 124503402 124503402 + Splice_Site SNP A A T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POTEA 340441 broad.mit.edu 37 8 43216289 43216290 + 3'UTR INS - A A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEA 340441 broad.mit.edu 37 8 43218201 43218201 + 3'UTR SNP C T T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEA 340441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 43147724 43147724 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POTEA 340441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 43152262 43152262 + Silent SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POTEA 340441 hgsc.bcm.edu 37 8 43147625 43147625 + 5'UTR SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTEC 388468 broad.mit.edu 37 18 14542931 14542931 + Missense_Mutation SNP C T T rs45554841 bycluster;byfrequency;by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEC 388468 broad.mit.edu 37 18 14543161 14543161 + 5'UTR SNP C A A rs45446896 byfrequency TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEC 388468 broad.mit.edu 37 18 14543161 14543161 + 5'UTR SNP C A A rs45446896 byfrequency TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTED 317754 hgsc.bcm.edu 37 21 14987721 14987721 + Missense_Mutation SNP A A G rs71265850 unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu 37 21 14987721 14987721 + Missense_Mutation SNP A A G rs71265850 unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu 37 21 14987811 14987811 + Missense_Mutation SNP C C T rs56121372 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu 37 21 15013714 15013714 + Missense_Mutation SNP G G A rs2334581 unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu 37 21 15013735 15013735 + Missense_Mutation SNP A A G rs9980783 bycluster TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu 37 21 15013880 15013880 + Missense_Mutation SNP A A G rs2878224 unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu 37 21 15013880 15013880 + Missense_Mutation SNP A A G rs2878224 unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTED 317754 hgsc.bcm.edu;ucsc.edu 37 21 15013721 15013721 + Missense_Mutation SNP A A G rs2334582 unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTEE 445582 broad.mit.edu 37 2 131995769 131995769 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEF 728378 broad.mit.edu 37 2 130831636 130831636 + 3'UTR SNP C T T rs3965159 unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEF 728378 broad.mit.edu 37 2 130831636 130831636 + 3'UTR SNP C T T rs3965159 unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEF 728378 broad.mit.edu 37 2 130878125 130878125 + 5'UTR SNP A G G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEF 728378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 130832626 130832626 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POTEF 728378 hgsc.bcm.edu 37 2 130831983 130831983 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTEG 404785 broad.mit.edu 37 14 19563209 19563210 + Intron INS - T T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEG 404785 broad.mit.edu 37 14 19563219 19563220 + Intron INS - C C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEG 404785 broad.mit.edu 37 14 19563232 19563232 + Intron SNP T C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEG 404785 hgsc.bcm.edu 37 14 19553436 19553436 + Missense_Mutation SNP C C T rs71228614 unknown;alternate_allele TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTEG 404785 hgsc.bcm.edu 37 14 19553436 19553436 + Missense_Mutation SNP C C T rs71228614 unknown;alternate_allele TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTEG 404785 hgsc.bcm.edu 37 14 19574243 19574243 + Missense_Mutation SNP C C A rs2818572 bycluster;by2hit2allele TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POTEH 23784 broad.mit.edu 37 22 16278057 16278057 + Intron SNP G A A rs2845220 bycluster;by2hit2allele;byhapmap TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEH 23784 broad.mit.edu 37 22 16278057 16278057 + Intron SNP G A A rs2845220 bycluster;by2hit2allele;byhapmap TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEH 23784 broad.mit.edu 37 22 16278057 16278057 + Intron SNP G A A rs2845220 bycluster;by2hit2allele;byhapmap TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POTEH 23784 hgsc.bcm.edu 37 22 16287868 16287869 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU1F1 5449 hgsc.bcm.edu 37 3 87322594 87322594 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID POU2AF1 5450 broad.mit.edu;ucsc.edu 37 11 111228240 111228240 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU2F1 5451 broad.mit.edu 37 1 167385178 167385179 + 3'UTR INS - A A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU2F1 5451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 167365627 167365627 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU2F1 5451 broad.mit.edu;ucsc.edu 37 1 167365546 167365546 + Silent SNP G A A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU3F2 5454 broad.mit.edu 37 6 99284220 99284220 + 3'UTR DEL C - - rs145778669 bycluster;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU3F4 5456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 82763423 82763423 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU3F4 5456 hgsc.bcm.edu 37 X 82764039 82764039 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU4F1 5457 broad.mit.edu 37 13 79176484 79176486 + In_Frame_Del DEL TGG - - novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 TGG TGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU4F1 5457 broad.mit.edu;hgsc.bcm.edu 37 13 79177468 79177468 + 5'UTR SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU4F2 5458 broad.mit.edu 37 4 147560212 147560212 + Translation_Start_Site SNP C A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU5F1 5460 hgsc.bcm.edu 37 6 31133894 31133894 + 5'UTR SNP G G C rs9501063 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU6F2 11281 broad.mit.edu 37 7 39500263 39500263 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU6F2 11281 broad.mit.edu 37 7 39500265 39500265 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx POU6F2 11281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 39247075 39247075 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq POU6F2 11281 hgsc.bcm.edu;ucsc.edu 37 7 39472854 39472854 + Missense_Mutation SNP C C T rs146637189 unknown;alternate_allele TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPA2 27068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106395063 106395063 + Missense_Mutation SNP G G A rs142379853 unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPA2 27068 hgsc.bcm.edu;ucsc.edu 37 4 106370542 106370542 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPAP2B 8613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57044640 57044640 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPAP2C 8612 hgsc.bcm.edu 37 19 287592 287592 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPAP2C 8612 hgsc.bcm.edu;ucsc.edu 37 19 282291 282291 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPAPDC1B 84513 broad.mit.edu 37 8 38125965 38125965 + Silent SNP G C C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPAPDC2 403313 broad.mit.edu;hgsc.bcm.edu 37 9 4663275 4663275 + 3'UTR SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPAPDC2 403313 hgsc.bcm.edu 37 9 4662602 4662603 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPARD 5467 broad.mit.edu 37 6 35393878 35393878 + 3'UTR SNP G C C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPARD 5467 hgsc.bcm.edu 37 6 35392338 35392338 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPARG 5468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 12422837 12422837 + Silent SNP G G A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPARG 5468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 12434123 12434123 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPARGC1A 10891 broad.mit.edu 37 4 23884810 23884810 + Intron DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPARGC1A 10891 broad.mit.edu 37 4 23891669 23891669 + 5'UTR SNP C T T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPARGC1A 10891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 23833232 23833232 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPARGC1A 10891 hgsc.bcm.edu;ucsc.edu 37 4 23815962 23815962 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPARGC1A 10891 hgsc.bcm.edu;ucsc.edu 37 4 23886513 23886513 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPARGC1B 133522 broad.mit.edu 37 5 149225491 149225491 + Intron SNP A C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPARGC1B 133522 broad.mit.edu;hgsc.bcm.edu 37 5 149212567 149212567 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPARGC1B 133522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149216300 149216300 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPARGC1B 133522 hgsc.bcm.edu 37 5 149210396 149210396 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPARGC1B 133522 hgsc.bcm.edu 37 5 149210396 149210396 + Missense_Mutation SNP G G C rs189353551 by1000genomes;alternate_allele TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPBPL1 0 hgsc.bcm.edu;ucsc.edu 37 4 74714347 74714347 + Splice_Region SNP C C G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPBPL2 0 broad.mit.edu 37 4 74919821 74919821 + RNA SNP G T T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPEF1 5475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 18836212 18836212 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPEF2 5470 hgsc.bcm.edu 37 4 76787408 76787408 + Silent SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPEF2 5470 hgsc.bcm.edu 37 4 76797629 76797629 + Silent SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPEF2 5470 hgsc.bcm.edu;ucsc.edu 37 4 76805891 76805891 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPFIA1 8500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 70201888 70201888 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA1 8500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 70218604 70218604 + Silent SNP T T C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA1 8500 broad.mit.edu;ucsc.edu 37 11 70184559 70184559 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPFIA1 8500 hgsc.bcm.edu;ucsc.edu 37 11 70172880 70172888 + In_Frame_Del DEL AAATCTGAA AAATCTGAA - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 AAATCTGAA AAATCTGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA1 8500 hgsc.bcm.edu;ucsc.edu 37 11 70200406 70200406 + Splice_Site SNP G G T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPFIA2 8499 broad.mit.edu;hgsc.bcm.edu 37 12 81675111 81675111 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA2 8499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 81675169 81675169 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA3 8541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49641602 49641602 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA4 8497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203024644 203024644 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIA4 8497 hgsc.bcm.edu 37 1 203033069 203033069 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPFIBP1 8496 broad.mit.edu 37 12 27799072 27799072 + Silent SNP C T T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPFIBP1 8496 broad.mit.edu 37 12 27800899 27800899 + Intron DEL A - - rs112008008 unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPFIBP1 8496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27824429 27824429 + Silent SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIBP1 8496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27835400 27835400 + Silent SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIBP1 8496 hgsc.bcm.edu;ucsc.edu 37 12 27787873 27787873 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPFIBP2 8495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 7663540 7663540 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPFIBP2 8495 hgsc.bcm.edu 37 11 7644313 7644313 + Intron SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPFIBP2 8495 hgsc.bcm.edu 37 11 7661048 7661050 + In_Frame_Del DEL CTC CTC - rs143023559 by1000genomes TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPHLN1 51535 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42748967 42748967 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPHLN1 51535 hgsc.bcm.edu;ucsc.edu 37 12 42840367 42840367 + Intron SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPIAL4G 644591 broad.mit.edu;hgsc.bcm.edu 37 1 143767882 143767882 + upstream SNP G G A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIB 5479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 64448267 64448267 + Silent SNP G G A rs143287832 unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIB 5479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 64448268 64448268 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIC 5480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122359616 122359616 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIC 5480 hgsc.bcm.edu 37 5 122359501 122359501 + 3'UTR SNP C C A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIC 5480 hgsc.bcm.edu 37 5 122359506 122359506 + 3'UTR SNP C C A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIE 10450 broad.mit.edu;hgsc.bcm.edu 37 1 40229518 40229518 + 3'UTR SNP C C T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIE 10450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40209514 40209514 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIH 10465 hgsc.bcm.edu;ucsc.edu 37 1 43124123 43124123 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPIL2 23759 broad.mit.edu;ucsc.edu 37 22 22024876 22024876 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPIL4 85313 broad.mit.edu;hgsc.bcm.edu 37 6 149838586 149838586 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PPIL4 85313 broad.mit.edu;hgsc.bcm.edu 37 6 149855873 149855873 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIL4 85313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 149833352 149833352 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PPIL4 85313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 149838510 149838510 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PPIL4 85313 hgsc.bcm.edu 37 6 149826604 149826604 + Silent SNP T T C novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM SOLID PPIL5 0 broad.mit.edu 37 14 50081325 50081325 + 3'UTR SNP G C C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPIP5K1 9677 broad.mit.edu 37 15 43873430 43873430 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPIP5K1 9677 hgsc.bcm.edu 37 15 43827396 43827396 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPIP5K2 23262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 102502993 102502993 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPIP5K2 23262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 102513641 102513641 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPL 5493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4940260 4940260 + Silent SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPL 5493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4940261 4940261 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPL 5493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4953981 4953981 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPL 5493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4953994 4953994 + Silent SNP C C A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPL 5493 broad.mit.edu;ucsc.edu 37 16 4940294 4940294 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1B 5495 broad.mit.edu 37 2 44457414 44457414 + Intron SNP A T T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1B 5495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44428909 44428909 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPM1B 5495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44436369 44436369 + Silent SNP T T C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPM1B 5495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44457623 44457623 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPM1B 5495 hgsc.bcm.edu;ucsc.edu 37 2 44429133 44429133 + Silent SNP T T A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPM1E 22843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57057344 57057344 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPM1E 22843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57058007 57058007 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PPM1E 22843 hgsc.bcm.edu 37 17 57047047 57047047 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPM1E 22843 hgsc.bcm.edu 37 17 57047047 57047047 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPM1E 22843 hgsc.bcm.edu;ucsc.edu 37 17 57057404 57057404 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID PPM1F 9647 broad.mit.edu 37 22 22293778 22293778 + Intron SNP T C C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1F 9647 broad.mit.edu 37 22 22300480 22300480 + 5'UTR SNP C A A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1G 5496 broad.mit.edu 37 2 27608334 27608334 + Intron DEL A - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1G 5496 broad.mit.edu 37 2 27615535 27615535 + Intron SNP C G G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1J 333926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113255367 113255367 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPM1J 333926 hgsc.bcm.edu 37 1 113252813 113252813 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPM1K 152926 broad.mit.edu 37 4 89183707 89183707 + 3'UTR SNP G A A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPM1L 151742 hgsc.bcm.edu 37 3 160783277 160783277 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPME1 51400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73964584 73964584 + 3'UTR SNP C C G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPME1 51400 hgsc.bcm.edu;ucsc.edu 37 11 73936224 73936224 + Intron SNP T T G novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1CB 5500 broad.mit.edu 37 2 29004771 29004771 + Intron SNP A C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1CB 5500 broad.mit.edu 37 2 29022230 29022230 + 3'UTR SNP G A A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R10 5514 broad.mit.edu;hgsc.bcm.edu 37 6 30569885 30569885 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R10 5514 hgsc.bcm.edu 37 6 30570687 30570687 + Silent SNP T T A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP1R12A 4659 hgsc.bcm.edu;ucsc.edu 37 12 80182470 80182471 + Frame_Shift_Del INS - - T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R12A 4659 hgsc.bcm.edu;ucsc.edu 37 12 80214666 80214666 + Silent SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP1R13B 23368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 104208221 104208222 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R13B 23368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 104208276 104208276 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R13B 23368 hgsc.bcm.edu 37 14 104206456 104206456 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3385-01A-02W-1475-10 TCGA-A3-3385-11A-01W-1475-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq PPP1R13L 10848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45901534 45901534 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R14B 26472 broad.mit.edu 37 11 64013926 64013926 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R14D 54866 broad.mit.edu 37 15 41107825 41107825 + 3'UTR SNP C A A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R15A 23645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49379159 49379159 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R15A 23645 hgsc.bcm.edu 37 19 49377208 49377208 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP1R15B 84919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204378920 204378920 + Missense_Mutation SNP T T A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R15B 84919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204380314 204380314 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R15B 84919 hgsc.bcm.edu;ucsc.edu 37 1 204379755 204379755 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP1R16A 84988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145722670 145722670 + Silent SNP C C T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R16A 84988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145724303 145724303 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R16B 26051 broad.mit.edu 37 20 37534706 37534706 + Missense_Mutation SNP A G G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R1B 84152 broad.mit.edu 37 17 37785438 37785438 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R2 5504 broad.mit.edu 37 3 195269862 195269862 + 5'UTR SNP G C C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R2P9 80316 broad.mit.edu 37 X 42637261 42637261 + Frame_Shift_Del DEL A - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP1R3A 5506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 113518058 113518058 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R3A 5506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 113558913 113558913 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R3A 5506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 113559039 113559039 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R3A 5506 hgsc.bcm.edu 37 7 113518387 113518387 + Silent SNP A A G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP1R3C 5507 hgsc.bcm.edu;ucsc.edu 37 10 93389894 93389894 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R3D 5509 broad.mit.edu;hgsc.bcm.edu 37 20 58514505 58514505 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R3F 89801 broad.mit.edu;hgsc.bcm.edu 37 X 49143162 49143162 + Silent SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R7 5510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242102749 242102749 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R9A 55607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94540664 94540664 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R9A 55607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94881092 94881092 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R9A 55607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94881334 94881334 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R9A 55607 hgsc.bcm.edu;ucsc.edu 37 7 94919499 94919499 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R9B 84687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48212737 48212737 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP1R9B 84687 hgsc.bcm.edu 37 17 48226734 48226734 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2CA 5515 hgsc.bcm.edu;ucsc.edu 37 5 133533531 133533531 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2CB 5516 broad.mit.edu 37 8 30643538 30643539 + 3'UTR INS - CTAT CTAT rs3832549 unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2CB 5516 broad.mit.edu;ucsc.edu 37 8 30651536 30651536 + Nonsense_Mutation SNP G T T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2CB 5516 hgsc.bcm.edu 37 8 30643766 30643766 + Silent SNP T T G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R1A 5518 broad.mit.edu 37 19 52704783 52704783 + Intron DEL A - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R1A 5518 broad.mit.edu 37 19 52729587 52729587 + 3'UTR DEL T - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R1A 5518 broad.mit.edu 37 19 52729587 52729587 + 3'UTR DEL T - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R1A 5518 hgsc.bcm.edu 37 19 52716326 52716326 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R1A 5518 hgsc.bcm.edu;ucsc.edu 37 19 52723429 52723429 + RNA SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R1A 5518 hgsc.bcm.edu;ucsc.edu 37 19 52724680 52724680 + Intron SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R1A 5518 hgsc.bcm.edu;ucsc.edu 37 19 52729234 52729234 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID PPP2R1B 5519 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111624212 111624212 + Silent SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R1B 5519 hgsc.bcm.edu;ucsc.edu 37 11 111624250 111624251 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2A 5520 broad.mit.edu;ucsc.edu 37 8 26217736 26217736 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R2B 5521 broad.mit.edu 37 5 145969341 145969341 + 3'UTR SNP T G G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R2B 5521 broad.mit.edu 37 5 146257812 146257812 + 5'UTR SNP G A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R2B 5521 broad.mit.edu;hgsc.bcm.edu 37 5 145980011 145980011 + Missense_Mutation SNP G G A rs148423117 unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2B 5521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145969638 145969638 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2B 5521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 146070789 146070789 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2B 5521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 146077636 146077636 + Silent SNP G G A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2B 5521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 146236091 146236091 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2C 5522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 6349697 6349697 + Silent SNP C C T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R2C 5522 hgsc.bcm.edu 37 4 6374376 6374376 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R2D 55844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 133748061 133748061 + Splice_Site SNP T T G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R3A 5523 hgsc.bcm.edu;ucsc.edu 37 3 135745814 135745814 + Silent SNP C C T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R3A 5523 hgsc.bcm.edu;ucsc.edu 37 3 135820908 135820908 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R3B 28227 broad.mit.edu 37 X 302224 302225 + Intron INS - CCC CCC novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R3B 28227 hgsc.bcm.edu;ucsc.edu 37 X 322172 322172 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R4 5524 broad.mit.edu;ucsc.edu 37 9 131909727 131909727 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP2R5A 5525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212506854 212506854 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R5A 5525 hgsc.bcm.edu;ucsc.edu 37 1 212522528 212522528 + Intron SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R5B 5526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64695788 64695788 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP2R5B 5526 hgsc.bcm.edu;ucsc.edu 37 11 64694267 64694267 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP2R5D 5528 hgsc.bcm.edu;ucsc.edu 37 6 42975942 42975942 + Silent SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP3CA 5530 hgsc.bcm.edu;ucsc.edu 37 4 102015047 102015047 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP3CC 5533 broad.mit.edu 37 8 22398404 22398404 + 3'UTR SNP C T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP3CC 5533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22370886 22370886 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP3R2 5535 broad.mit.edu 37 9 104356590 104356590 + 3'UTR SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP3R2 5535 broad.mit.edu;hgsc.bcm.edu 37 9 104357268 104357268 + 5'UTR SNP G G T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP3R2 5535 hgsc.bcm.edu 37 9 104356948 104356948 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP4C 5531 hgsc.bcm.edu 37 16 30096007 30096007 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP4R1 9989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 9570186 9570186 + Silent SNP T T A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP4R4 57718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94741786 94741786 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP4R4 57718 broad.mit.edu;ucsc.edu 37 14 94745003 94745003 + 3'UTR SNP C A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP4R4 57718 hgsc.bcm.edu;ucsc.edu 37 14 94697034 94697034 + Silent SNP C C A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP5C 5536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46890487 46890487 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP5C 5536 hgsc.bcm.edu;ucsc.edu 37 19 46888136 46888136 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP6C 5537 broad.mit.edu 37 9 127911822 127911822 + 3'UTR DEL A - - novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP6C 5537 broad.mit.edu 37 9 127911822 127911822 + 3'UTR DEL A - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPP6R1 22870 broad.mit.edu;hgsc.bcm.edu 37 19 55748092 55748092 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP6R1 22870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55752433 55752436 + Frame_Shift_Del DEL ATGG ATGG - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 ATGG ATGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP6R1 22870 hgsc.bcm.edu 37 19 55751267 55751267 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPP6R3 55291 broad.mit.edu;hgsc.bcm.edu 37 11 68355371 68355371 + Intron SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP6R3 55291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68312471 68312471 + Silent SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP6R3 55291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68315579 68315579 + Silent SNP T T A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPP6R3 55291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68355413 68355413 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPPDE1 0 broad.mit.edu 37 1 244868992 244868992 + Silent SNP A G G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPPDE1 0 hgsc.bcm.edu;ucsc.edu 37 1 244849896 244849896 + Intron SNP C C A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPRC1 23082 broad.mit.edu 37 10 103907139 103907139 + Silent SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPRC1 23082 broad.mit.edu;hgsc.bcm.edu 37 10 103899302 103899302 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPRC1 23082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103898406 103898406 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPRC1 23082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103901173 103901173 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPT1 5538 broad.mit.edu 37 1 40539203 40539204 + 3'UTR INS - TGAT TGAT rs3841663 bycluster;by1000genomes TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPWD1 23398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64859225 64859225 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPWD1 23398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64867889 64867889 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PPYR1 5540 broad.mit.edu 37 10 47088041 47088041 + 3'UTR SNP T A A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PPYR1 5540 hgsc.bcm.edu 37 10 47087499 47087499 + Missense_Mutation SNP G G A rs114592738 bycluster;byfrequency;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PPYR1 5540 hgsc.bcm.edu 37 10 47087499 47087499 + Missense_Mutation SNP G G A rs114592738 bycluster;byfrequency;by1000genomes TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PQLC3 130814 broad.mit.edu 37 2 11318191 11318192 + 3'UTR INS - AGA AGA rs3832138 bycluster;by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PQLC3 130814 broad.mit.edu 37 2 11318191 11318192 + 3'UTR INS - AGA AGA rs3832138 bycluster;by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PQLC3 130814 broad.mit.edu 37 2 11318225 11318235 + 3'UTR DEL CCATTTTGAGG - - rs3832137 bycluster;by1000genomes TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 CCATTTTGAGG CCATTTTGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PQLC3 130814 broad.mit.edu 37 2 11318225 11318235 + 3'UTR DEL CCATTTTGAGG - - rs3832137 bycluster;by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 CCATTTTGAGG CCATTTTGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PQLC3 130814 broad.mit.edu 37 2 11318225 11318235 + 3'UTR DEL CCATTTTGAGG - - rs3832137 bycluster;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 CCATTTTGAGG CCATTTTGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PQLC3 130814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11304356 11304356 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PQLC3 130814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11312070 11312070 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAM1 84106 broad.mit.edu;ucsc.edu 37 19 8564274 8564274 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAME 23532 broad.mit.edu 37 22 22899415 22899415 + Intron SNP A T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAME 23532 broad.mit.edu 37 22 22899416 22899416 + Intron SNP A T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAME 23532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 22890580 22890580 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAME 23532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 22893221 22893221 + Silent SNP A A C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAME 23532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 22899279 22899279 + 5'UTR SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAMEF10 343071 broad.mit.edu 37 1 12954436 12954436 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAMEF10 343071 hgsc.bcm.edu 37 1 12955492 12955492 + Missense_Mutation SNP T T G rs2743620 bycluster TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12835193 12835193 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12837331 12837331 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12837358 12837358 + Silent SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAMEF12 390999 hgsc.bcm.edu 37 1 12837463 12837463 + Silent SNP C C T rs112368379 by1000genomes TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12837652 12837652 + Silent SNP C C T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12837652 12837652 + Silent SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12837664 12837664 + Silent SNP C C T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF12 390999 hgsc.bcm.edu 37 1 12837669 12837669 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF1 65121 broad.mit.edu 37 1 12853441 12853441 + Missense_Mutation SNP C A A rs75270454 bycluster;byfrequency TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAMEF1 65121 broad.mit.edu;hgsc.bcm.edu 37 1 12854406 12854406 + Silent SNP G G A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAMEF1 65121 hgsc.bcm.edu 37 1 12854414 12854414 + Missense_Mutation SNP G G A rs1063769 bycluster;byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF20 645425 broad.mit.edu 37 1 13743046 13743046 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAMEF22 653606 hgsc.bcm.edu 37 1 13038119 13038119 + Missense_Mutation SNP G G C rs71258914 unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF22 653606 hgsc.bcm.edu 37 1 13038119 13038119 + Missense_Mutation SNP G G C rs71258914 unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF2 65122 broad.mit.edu 37 1 12921762 12921762 + 3'UTR SNP A C C rs2473041 unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAMEF2 65122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12919829 12919829 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAMEF4 400735 broad.mit.edu;hgsc.bcm.edu 37 1 12943139 12943139 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRAMEF6 440561 broad.mit.edu 37 1 13001258 13001258 + Missense_Mutation SNP C T T rs3927874 unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRAMEF7 441871 hgsc.bcm.edu 37 1 12977626 12977626 + Silent SNP A A G rs61778319 bycluster;byfrequency TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF7 441871 hgsc.bcm.edu 37 1 12977766 12977766 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRAMEF7 441871 hgsc.bcm.edu 37 1 12980127 12980127 + Missense_Mutation SNP C T T rs1832597 bycluster;byfrequency TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRB1 5542 broad.mit.edu 37 12 11506350 11506350 + Silent SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB1 5542 broad.mit.edu 37 12 11506350 11506350 + Silent SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB1 5542 broad.mit.edu 37 12 11506356 11506356 + Silent SNP G A A rs78796502 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB1 5542 broad.mit.edu 37 12 11506399 11506399 + Missense_Mutation SNP T C C rs76491584 unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB1 5542 broad.mit.edu 37 12 11506582 11506582 + Splice_Site SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB1 5542 broad.mit.edu;hgsc.bcm.edu 37 12 11506647 11506647 + Silent SNP T T C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRB1 5542 hgsc.bcm.edu 37 12 11506336 11506336 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRB1 5542 hgsc.bcm.edu 37 12 11506464 11506464 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRB1 5542 hgsc.bcm.edu 37 12 11506473 11506473 + Missense_Mutation SNP C C G rs61930109 byfrequency;by1000genomes TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRB1 5542 hgsc.bcm.edu 37 12 11506473 11506473 + Missense_Mutation SNP C C G rs61930109 byfrequency;by1000genomes TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRB1 5542 hgsc.bcm.edu 37 12 11506654 11506654 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRB1 5542 hgsc.bcm.edu 37 12 11506669 11506669 + Missense_Mutation SNP G G T rs74903687 bycluster;byfrequency;by1000genomes TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRB2 653247 broad.mit.edu 37 12 11546588 11546588 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB2 653247 hgsc.bcm.edu 37 12 11546808 11546808 + Silent SNP A A G rs1921331 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRB3 5544 broad.mit.edu 37 12 11420500 11420500 + Missense_Mutation SNP G T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB3 5544 broad.mit.edu 37 12 11420779 11420779 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRB3 5544 hgsc.bcm.edu 37 12 11420895 11420895 + Silent SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRB4 5545 broad.mit.edu;hgsc.bcm.edu 37 12 11461568 11461568 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRB4 5545 hgsc.bcm.edu 37 12 11461580 11461580 + Missense_Mutation SNP T T G rs12303607 by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRC1 9055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91517903 91517903 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRC1 9055 hgsc.bcm.edu;ucsc.edu 37 15 91523521 91523521 + Silent SNP C C T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRCC 5546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156767110 156767110 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRCC 5546 broad.mit.edu;ucsc.edu 37 1 156764508 156764508 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM10 56980 broad.mit.edu;hgsc.bcm.edu 37 11 129805103 129805103 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM10 56980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129794821 129794821 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM10 56980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129817095 129817095 + Silent SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM10 56980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129830865 129830865 + 5'UTR SNP C C G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM10 56980 hgsc.bcm.edu 37 11 129782003 129782003 + Missense_Mutation SNP C C G rs141397814 byfrequency TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM10 56980 hgsc.bcm.edu;ucsc.edu 37 11 129772385 129772385 + Silent SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM11 56981 broad.mit.edu 37 11 45235135 45235135 + Intron DEL T - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM11 56981 broad.mit.edu 37 11 45246528 45246528 + 3'UTR SNP G A A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM11 56981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45245952 45245952 + Silent SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM11 56981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45245953 45245953 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM12 59335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133542139 133542139 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM12 59335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133543580 133543580 + Silent SNP C C A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM13 59336 broad.mit.edu 37 6 100057184 100057184 + Splice_Site SNP G A A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM13 59336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100062550 100062550 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM13 59336 hgsc.bcm.edu;ucsc.edu 37 6 100057099 100057099 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM14 63978 broad.mit.edu 37 8 70982083 70982083 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM14 63978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70978469 70978469 + Splice_Site SNP C C A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM14 63978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70981476 70981476 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM14 63978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70981667 70981667 + Silent SNP A A G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM15 63977 broad.mit.edu 37 21 43220665 43220665 + 3'UTR DEL A - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM15 63977 broad.mit.edu 37 21 43230601 43230601 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM15 63977 hgsc.bcm.edu 37 21 43240050 43240050 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM15 63977 hgsc.bcm.edu 37 21 43287445 43287445 + Silent SNP G G A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM1 639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 106553602 106553602 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM16 63976 broad.mit.edu 37 1 3350397 3350397 + 3'UTR SNP G T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM16 63976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3102700 3102700 + Missense_Mutation SNP G G A rs183153140 by1000genomes TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM16 63976 hgsc.bcm.edu 37 1 3321338 3321338 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM2 7799 hgsc.bcm.edu 37 1 14075880 14075880 + Silent SNP C C T rs75417771 bycluster;byfrequency;by1000genomes TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM2 7799 hgsc.bcm.edu 37 1 14105137 14105139 + In_Frame_Del DEL GAT GAT - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 GAT GAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM2 7799 hgsc.bcm.edu 37 1 14105142 14105142 + Missense_Mutation SNP T T A rs151133690 byfrequency TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM2 7799 hgsc.bcm.edu;ucsc.edu 37 1 14106783 14106783 + Silent SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM2 7799 hgsc.bcm.edu;ucsc.edu 37 1 14108935 14108935 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM4 11108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108145591 108145591 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM4 11108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108145796 108145797 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM4 11108 hgsc.bcm.edu 37 12 108147767 108147767 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM5 11107 broad.mit.edu 37 4 121737604 121737604 + Intron SNP T A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM5 11107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 121828700 121828700 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDM5 11107 hgsc.bcm.edu;ucsc.edu 37 4 121631520 121631520 + Silent SNP G G T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM6 93166 broad.mit.edu 37 5 122425712 122425712 + Frame_Shift_Del DEL G - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM7 11105 hgsc.bcm.edu;ucsc.edu 37 16 90127868 90127868 + Missense_Mutation SNP G G T rs139778453 unknown;alternate_allele TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM7 11105 hgsc.bcm.edu;ucsc.edu 37 16 90130158 90130158 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDM9 56979 broad.mit.edu 37 5 23522473 23522473 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM9 56979 broad.mit.edu 37 5 23527472 23527472 + Missense_Mutation SNP G A A rs112666693 unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDM9 56979 hgsc.bcm.edu;ucsc.edu 37 5 23526898 23526898 + Silent SNP C C T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRDX1 5052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45984673 45984673 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDX2 7001 broad.mit.edu 37 19 12907780 12907780 + 3'UTR SNP G C C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRDX4 10549 broad.mit.edu;hgsc.bcm.edu 37 X 23704501 23704501 + 3'UTR SNP C C T rs184954482 by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRDX5 25824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64088367 64088367 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREB 10113 hgsc.bcm.edu;ucsc.edu 37 2 27355147 27355147 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRELID1 27166 broad.mit.edu;hgsc.bcm.edu 37 5 176731056 176731056 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRELID1 27166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176733119 176733119 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRELID2 153768 broad.mit.edu 37 5 145175167 145175168 + Intron INS - A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRELP 5549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203452939 203452939 + Silent SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRELP 5549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203453269 203453269 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREP 5550 hgsc.bcm.edu 37 6 105800846 105800846 + Splice_Site SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PREP 5550 hgsc.bcm.edu;ucsc.edu 37 6 105729690 105729690 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PREPL 9581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44554022 44554022 + Silent SNP T T A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREPL 9581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44556213 44556213 + Silent SNP A A C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREPL 9581 hgsc.bcm.edu 37 2 44548950 44548950 + Intron SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PREPL 9581 hgsc.bcm.edu;ucsc.edu 37 2 44549924 44549924 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PREX1 57580 broad.mit.edu 37 20 47246011 47246011 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PREX1 57580 broad.mit.edu;hgsc.bcm.edu 37 20 47244458 47244458 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47258752 47258752 + Silent SNP C C A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47266546 47266546 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47266686 47266686 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47292733 47292733 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47309286 47309286 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PREX2 80243 broad.mit.edu 37 8 68865795 68865795 + Intron DEL C - - novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PREX2 80243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 69009342 69009342 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRF1 5551 hgsc.bcm.edu;ucsc.edu 37 10 72357903 72357903 + Missense_Mutation SNP C C T rs141702424 unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRG3 10394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57147060 57147060 + Silent SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRG4 23572 broad.mit.edu 37 1 186276051 186276051 + Silent SNP C T T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRG4 23572 broad.mit.edu 37 1 186276052 186276052 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRG4 23572 broad.mit.edu 37 1 186276075 186276075 + Silent SNP T C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRG4 23572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186275897 186275897 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRG4 23572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186277944 186277944 + Silent SNP C C G novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRG4 23572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186278973 186278973 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRG4 23572 hgsc.bcm.edu 37 1 186265999 186265999 + 5'UTR SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRG4 23572 hgsc.bcm.edu 37 1 186275463 186275463 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRG4 23572 hgsc.bcm.edu 37 1 186276284 186276286 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRG4 23572 hgsc.bcm.edu 37 1 186276624 186276624 + Silent SNP A A G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRH1 5554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11035696 11035696 + Splice_Site SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIC285 0 broad.mit.edu 37 20 62192230 62192230 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIC285 0 broad.mit.edu;hgsc.bcm.edu 37 20 62193088 62193088 + Silent SNP C C G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRICKLE1 144165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42853975 42853975 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRICKLE1 144165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42864091 42864091 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRICKLE1 144165 hgsc.bcm.edu;ucsc.edu 37 12 42854246 42854246 + Silent SNP T T G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRICKLE3 4007 hgsc.bcm.edu 37 X 49032303 49032304 + In_Frame_Ins INS - - GTGATG novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRICKLE4 29964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41752690 41752690 + Silent SNP C C T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIM1 5557 broad.mit.edu 37 12 57137816 57137816 + Intron SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM1 5557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57139904 57139904 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIM1 5557 hgsc.bcm.edu;ucsc.edu 37 12 57137871 57137871 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIM2 5558 broad.mit.edu 37 6 57191021 57191022 + Intron INS - G G rs11400419 bycluster;by1000genomes TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57254950 57254951 + Intron INS - T T rs5876554 bycluster;by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512787 57512788 + Splice_Site INS - CACCAAGGC CACCAAGGC novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512788 57512789 + Splice_Site INS - TA TA novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512788 57512789 + Splice_Site INS - TA TA novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512794 57512796 + Splice_Site DEL ATT - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 ATT ATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512916 57512917 + Splice_Site INS - T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512916 57512917 + Splice_Site INS - T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu 37 6 57512930 57512931 + Splice_Site INS - GT GT novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRIM2 5558 broad.mit.edu;hgsc.bcm.edu 37 6 57372299 57372299 + Silent SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIM2 5558 broad.mit.edu;hgsc.bcm.edu 37 6 57498975 57498975 + Silent SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIM2 5558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 57185282 57185282 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRIM2 5558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 57185310 57185310 + Silent SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAB1 5564 broad.mit.edu 37 12 120119280 120119280 + 3'UTR SNP G A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKACA 5566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14204026 14204026 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKACB 5567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84610143 84610143 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKACB 5567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84670172 84670172 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKACB 5567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84679863 84679863 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKACB 5567 hgsc.bcm.edu 37 1 84544032 84544032 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKACG 5568 broad.mit.edu 37 9 71627879 71627879 + 3'UTR SNP C T T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKACG 5568 broad.mit.edu;hgsc.bcm.edu 37 9 71628614 71628614 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKACG 5568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 71628711 71628711 + Missense_Mutation SNP C C T rs138606760 unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG1 5571 broad.mit.edu 37 12 49398573 49398573 + Intron SNP T A A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAG1 5571 broad.mit.edu 37 12 49398646 49398646 + Intron SNP C T T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAG1 5571 broad.mit.edu 37 12 49398717 49398717 + Intron SNP T G G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAG1 5571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49396983 49396983 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 broad.mit.edu 37 7 151254556 151254556 + Intron DEL A - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAG2 51422 broad.mit.edu 37 7 151504031 151504031 + Intron DEL A - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAG2 51422 broad.mit.edu 37 7 151504031 151504031 + Intron DEL A - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAG2 51422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151262817 151262817 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151478258 151478258 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKAG2 51422 hgsc.bcm.edu 37 7 151548666 151548666 + Intron SNP T T A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKAG2 51422 hgsc.bcm.edu 37 7 151552089 151552089 + Intron SNP A A C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151552094 151552094 + Intron SNP C C T rs146381454 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151552094 151552094 + Intron SNP C C T rs146381454 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151552164 151552164 + Intron SNP C C G rs112678941 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151552539 151552539 + Intron SNP T T C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151552556 151552556 + Intron SNP G G C rs116412292 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu 37 7 151552556 151552556 + Intron SNP G G C rs116412292 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu;ucsc.edu 37 7 151265857 151265862 + In_Frame_Del DEL CCACTG CCACTG - novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 CCACTG CCACTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAG2 51422 hgsc.bcm.edu;ucsc.edu 37 7 151483611 151483611 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKAG2 51422 hgsc.bcm.edu;ucsc.edu 37 7 151490958 151490958 + Intron SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAR1A 5573 broad.mit.edu 37 17 66511419 66511419 + Intron SNP T C C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAR1A 5573 broad.mit.edu 37 17 66526759 66526762 + 3'UTR DEL TAAC - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 TAAC TAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKAR1A 5573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66525084 66525084 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKAR1A 5573 hgsc.bcm.edu;ucsc.edu 37 17 66511547 66511547 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID PRKAR2B 5577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106799894 106799894 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCA 5578 broad.mit.edu 37 17 64801916 64801917 + 3'UTR DEL GT - - rs146191948 by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCA 5578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64731699 64731699 + Silent SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCA 5578 hgsc.bcm.edu 37 17 64800059 64800059 + Silent SNP T T C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCA 5578 hgsc.bcm.edu 37 17 64800200 64800200 + 3'UTR SNP C C A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCA 5578 hgsc.bcm.edu;ucsc.edu 37 17 64536374 64536374 + Intron SNP A A G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCB 5579 broad.mit.edu 37 16 24231171 24231171 + Intron SNP C T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCB 5579 broad.mit.edu 37 16 24231490 24231490 + 3'UTR SNP G T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCB 5579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24046821 24046821 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCB 5579 broad.mit.edu;ucsc.edu 37 16 24185869 24185869 + Silent SNP G C C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCB 5579 hgsc.bcm.edu;ucsc.edu 37 16 23848732 23848732 + Splice_Region SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCD 5580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53220309 53220309 + Missense_Mutation SNP G G A rs150331740 unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCD 5580 hgsc.bcm.edu 37 3 53213676 53213676 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCD 5580 hgsc.bcm.edu 37 3 53219628 53219628 + Silent SNP C C T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCD 5580 hgsc.bcm.edu 37 3 53219628 53219628 + Silent SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCD 5580 hgsc.bcm.edu 37 3 53223226 53223226 + Silent SNP C C A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCE 5581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 45879259 45879259 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCE 5581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 46228548 46228548 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCE 5581 hgsc.bcm.edu 37 2 46203625 46203626 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCE 5581 hgsc.bcm.edu 37 2 46203625 46203626 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCE 5581 hgsc.bcm.edu 37 2 46203638 46203638 + Silent SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCE 5581 hgsc.bcm.edu;ucsc.edu 37 2 46211702 46211702 + Silent SNP C C A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCG 5582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54395811 54395811 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKCG 5582 hgsc.bcm.edu;ucsc.edu 37 19 54386403 54386403 + Intron SNP C C G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCH 5583 broad.mit.edu 37 14 61789073 61789073 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCH 5583 hgsc.bcm.edu;ucsc.edu 37 14 62014499 62014499 + Frame_Shift_Del DEL G G - novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCI 5584 broad.mit.edu 37 3 169940502 169940503 + Frame_Shift_Del DEL AG - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCI 5584 broad.mit.edu 37 3 170021195 170021196 + 3'UTR INS - A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCI 5584 hgsc.bcm.edu;ucsc.edu 37 3 169991057 169991057 + Intron SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCQ 5588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6520965 6520965 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCQ 5588 hgsc.bcm.edu;ucsc.edu 37 10 6525533 6525533 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCQ 5588 hgsc.bcm.edu;ucsc.edu 37 10 6553149 6553149 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKCSH 5589 broad.mit.edu 37 19 11558317 11558317 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKCZ 5590 hgsc.bcm.edu 37 1 2066743 2066743 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKCZ 5590 hgsc.bcm.edu;ucsc.edu 37 1 2077494 2077494 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID PRKD1 5587 broad.mit.edu 37 14 30046365 30046365 + 3'UTR SNP T G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKD1 5587 broad.mit.edu;hgsc.bcm.edu 37 14 30132919 30132919 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKD1 5587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 30066775 30066775 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKD1 5587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 30132916 30132916 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKD2 25865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47177845 47177845 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKD2 25865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47181735 47181735 + Silent SNP G G A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKD2 25865 hgsc.bcm.edu 37 19 47177809 47177809 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKD2 25865 hgsc.bcm.edu;ucsc.edu 37 19 47177890 47177899 + Frame_Shift_Del DEL CTGCTGCAAA CTGCTGCAAA - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 CTGCTGCAAA CTGCTGCAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKD3 23683 broad.mit.edu 37 2 37496680 37496680 + Intron DEL A - - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKD3 23683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37486752 37486752 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKD3 23683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37501595 37501595 + Silent SNP A A C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKD3 23683 hgsc.bcm.edu;ucsc.edu 37 2 37520414 37520414 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKDC 5591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48694798 48694798 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKDC 5591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48730110 48730110 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID PRKDC 5591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48767813 48767813 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKDC 5591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48794597 48794597 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PRKDC 5591 hgsc.bcm.edu 37 8 48711870 48711870 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKDC 5591 hgsc.bcm.edu 37 8 48805816 48805817 + Frame_Shift_Ins INS - - G rs11411516 bycluster;by1000genomes TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKDC 5591 hgsc.bcm.edu 37 8 48805816 48805817 + Frame_Shift_Ins INS - - G rs11411516 bycluster;by1000genomes TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKG1 5592 broad.mit.edu 37 10 52751071 52751079 + 5'UTR DEL GCCGCCGCC - - rs66567258 unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GCCGCCGCC GCCGCCGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKG1 5592 broad.mit.edu 37 10 52751071 52751079 + 5'UTR DEL GCCGCCGCC - - rs66567258 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 GCCGCCGCC GCCGCCGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKG1 5592 broad.mit.edu 37 10 53227633 53227633 + Intron SNP G A A rs140578998 by1000genomes TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKG1 5592 broad.mit.edu 37 10 54053913 54053914 + 3'UTR INS - G G rs5784918 bycluster;by1000genomes TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRKG1 5592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 53667290 53667290 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKG1 5592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 53921672 53921672 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKG2 5593 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 82126026 82126026 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKG2 5593 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 82126123 82126123 + Missense_Mutation SNP G G A rs187350442 by1000genomes TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKRA 8575 hgsc.bcm.edu 37 2 179307992 179307992 + Splice_Site SNP A A T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRKRA 8575 hgsc.bcm.edu 37 2 179315735 179315736 + Frame_Shift_Del DEL GC GC - rs141354030 by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKRA 8575 hgsc.bcm.edu 37 2 179315735 179315736 + Frame_Shift_Del DEL GC GC - rs141354030 by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRKRIP1 79706 broad.mit.edu 37 7 102065632 102065632 + 3'UTR SNP T C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRLHR 2834 broad.mit.edu 37 10 120353582 120353582 + 3'UTR SNP G T T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRLR 5618 broad.mit.edu 37 5 35057005 35057005 + 3'UTR DEL A - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRLR 5618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35065723 35065723 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRLR 5618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35084671 35084671 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRM3 58531 hgsc.bcm.edu 37 16 11367390 11367401 + In_Frame_Del DEL GCTGTGGCCTGG GCTGTGGCCTGG - novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 GCTGTGGCCTGG GCTGTGGCCTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT10 90826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148578942 148578942 + Splice_Site SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT1 3276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50185319 50185319 + Silent SNP C C T rs143554083 unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT1 3276 hgsc.bcm.edu 37 19 50187293 50187293 + Silent SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRMT2 3275 broad.mit.edu 37 21 48063387 48063388 + Intron INS - A A rs113903382 unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRMT3 10196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20486044 20486044 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT3 10196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20486049 20486049 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT5 10419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23393369 23393369 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT6 55170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 107599560 107599560 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT7 54496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68386205 68386205 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRMT8 56341 broad.mit.edu 37 12 3677561 3677562 + Intron INS - GTT GTT novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRMT8 56341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 3659255 3659255 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRNP 5621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4680528 4680528 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRNT 149830 broad.mit.edu 37 20 4721284 4721284 + RNA SNP C A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROC 5624 broad.mit.edu 37 2 128186724 128186724 + 3'UTR DEL G - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROC 5624 broad.mit.edu;hgsc.bcm.edu 37 2 128186505 128186505 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROC 5624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128185973 128185973 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROC 5624 hgsc.bcm.edu 37 2 128184763 128184763 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROC 5624 hgsc.bcm.edu;ucsc.edu 37 2 128178989 128178989 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROCR 10544 broad.mit.edu 37 20 33762727 33762727 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROCR 10544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33763988 33763988 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROCR 10544 hgsc.bcm.edu 37 20 33764031 33764031 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROCR 10544 hgsc.bcm.edu 37 20 33764589 33764589 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRODH2 58510 broad.mit.edu 37 19 36304176 36304176 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRODH2 58510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36303397 36303397 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRODH2 58510 broad.mit.edu;ucsc.edu 37 19 36303703 36303703 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRODH2 58510 hgsc.bcm.edu 37 19 36290976 36290976 + Silent SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRODH2 58510 hgsc.bcm.edu 37 19 36303154 36303154 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRODH 5625 hgsc.bcm.edu 37 22 18904467 18904467 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROK2 60675 hgsc.bcm.edu 37 3 71830711 71830711 + Silent SNP G G A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROKR1 10887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 68882419 68882419 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROKR2 128674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 5294646 5294646 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROKR2 128674 hgsc.bcm.edu 37 20 5294732 5294732 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROKR2 128674 hgsc.bcm.edu 37 20 5294761 5294761 + Silent SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROL1 58503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71275489 71275489 + Silent SNP C C T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROM1 8842 broad.mit.edu 37 4 16020105 16020105 + Silent SNP G A A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROM2 150696 broad.mit.edu 37 2 95944215 95944215 + Intron DEL G - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROM2 150696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 95947697 95947697 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROM2 150696 hgsc.bcm.edu 37 2 95943766 95943766 + Intron SNP G G C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROM2 150696 hgsc.bcm.edu 37 2 95947011 95947011 + Silent SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROM2 150696 hgsc.bcm.edu 37 2 95951372 95951372 + Intron SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROP1 5626 broad.mit.edu;hgsc.bcm.edu 37 5 177421243 177421243 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROS1 5627 broad.mit.edu 37 3 93643084 93643084 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROS1 5627 broad.mit.edu 37 3 93643109 93643109 + Splice_Site SNP C A A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PROS1 5627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 93598122 93598122 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROS1 5627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 93624946 93624946 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ProSAPiP1 0 broad.mit.edu;hgsc.bcm.edu 37 20 3146916 3146916 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROX1 5629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214170133 214170133 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROX1 5629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214171381 214171381 + Silent SNP C C T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROX1 5629 hgsc.bcm.edu 37 1 214170552 214170552 + Missense_Mutation SNP T T A rs146788962 unknown;alternate_allele TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROX1 5629 hgsc.bcm.edu 37 1 214170552 214170552 + Missense_Mutation SNP T T A rs146788962 unknown;alternate_allele TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROX1 5629 hgsc.bcm.edu 37 1 214170598 214170598 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PROX2 283571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75329252 75329252 + Missense_Mutation SNP A A C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PROX2 283571 hgsc.bcm.edu 37 14 75329730 75329730 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPF18 8559 broad.mit.edu 37 10 13682291 13682292 + Intron INS - G G rs72511743 bycluster;by1000genomes TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF19 27339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60658695 60658695 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF19 27339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60671329 60671329 + Silent SNP A A T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF19 27339 broad.mit.edu;ucsc.edu 37 11 60658678 60658678 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF31 26121 broad.mit.edu 37 19 54634954 54634954 + 3'UTR SNP A C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF31 26121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54625914 54625914 + Silent SNP A A C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF38B 55119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109238748 109238748 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF38B 55119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109238749 109238749 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF3 9129 broad.mit.edu 37 1 150301001 150301001 + Intron SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF3 9129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150310685 150310685 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF3 9129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150312943 150312943 + Silent SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF39 55015 broad.mit.edu;hgsc.bcm.edu 37 14 45581684 45581684 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF39 55015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45571777 45571777 + Silent SNP T T C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF40A 55660 broad.mit.edu 37 2 153526016 153526019 + 5'UTR DEL AAAC - - rs145489961 by1000genomes TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 AAAC AAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF40B 25766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50037528 50037528 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF40B 25766 hgsc.bcm.edu;ucsc.edu 37 12 50027384 50027384 + Intron SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF40B 25766 hgsc.bcm.edu;ucsc.edu 37 12 50029153 50029153 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPF4B 8899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 4032532 4032532 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF6 24148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62642793 62642793 + Silent SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF6 24148 hgsc.bcm.edu 37 20 62612574 62612574 + 5'UTR SNP C C T rs45558633 bycluster;by1000genomes TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF8 10594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1579248 1579248 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF8 10594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1586888 1586888 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF8 10594 broad.mit.edu;ucsc.edu 37 17 1564002 1564002 + Missense_Mutation SNP T A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF8 10594 broad.mit.edu;ucsc.edu 37 17 1582621 1582621 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPF8 10594 hgsc.bcm.edu 37 17 1584776 1584776 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPF8 10594 hgsc.bcm.edu;ucsc.edu 37 17 1559850 1559855 + In_Frame_Del DEL GTAAGT GTAAGT - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 GTAAGT GTAAGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPF8 10594 hgsc.bcm.edu;ucsc.edu 37 17 1559949 1559949 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPH2 5961 broad.mit.edu;ucsc.edu 37 6 42666085 42666085 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPH2 5961 hgsc.bcm.edu 37 6 42690020 42690020 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPH 5630 broad.mit.edu;ucsc.edu 37 12 49690246 49690246 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPH 5630 hgsc.bcm.edu;ucsc.edu 37 12 49692058 49692058 + Intron SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPS1 5631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106885678 106885678 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPS1L1 221823 broad.mit.edu;hgsc.bcm.edu 37 7 18066427 18066427 + 3'UTR SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPS1L1 221823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 18066846 18066846 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPS2 5634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12827407 12827407 + Missense_Mutation SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPS2 5634 broad.mit.edu;ucsc.edu 37 X 12817354 12817354 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRPS2(dist=5667) 0 hgsc.bcm.edu 37 X 12848013 12848013 + IGR SNP A A T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPS2(dist=5685) 0 hgsc.bcm.edu 37 X 12848031 12848031 + IGR SNP T T A novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPS2(dist=5688) 0 hgsc.bcm.edu 37 X 12848034 12848034 + IGR SNP T T C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPSAP1 5635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74307778 74307778 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPSAP1 5635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74324943 74324943 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPSAP1 5635 hgsc.bcm.edu;ucsc.edu 37 17 74308958 74308958 + Missense_Mutation SNP A A G rs141217356 unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRPSAP2 5636 hgsc.bcm.edu 37 17 18770583 18770583 + Intron SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRPSAP2 5636 hgsc.bcm.edu 37 17 18814497 18814497 + Silent SNP G G C novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRR11 55771 hgsc.bcm.edu;ucsc.edu 37 17 57262419 57262419 + Missense_Mutation SNP G G C rs114400215 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR12 57479 broad.mit.edu 37 19 50100809 50100810 + Frame_Shift_Del DEL CT - - novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRR12 57479 broad.mit.edu 37 19 50128756 50128756 + Frame_Shift_Del DEL G - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRR12 57479 broad.mit.edu;hgsc.bcm.edu 37 19 50099582 50099582 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR12 57479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50098148 50098148 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR12 57479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50118189 50118189 + Silent SNP C C T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR12 57479 hgsc.bcm.edu 37 19 50099021 50099021 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR12 57479 hgsc.bcm.edu 37 19 50117833 50117833 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRR13 54458 broad.mit.edu 37 12 53839947 53839947 + 3'UTR SNP C T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRR13 54458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53837461 53837461 + Silent SNP A A G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR14 78994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30667486 30667486 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR15L 79170 broad.mit.edu 37 17 46030230 46030230 + 3'UTR SNP C T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRR16 51334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 120021872 120021872 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR19 284338 hgsc.bcm.edu 37 19 42814578 42814578 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRR21 643905 hgsc.bcm.edu 37 2 240982052 240982052 + Silent SNP C C G rs77588089 bycluster TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR21 643905 hgsc.bcm.edu 37 2 240982219 240982219 + Missense_Mutation SNP A A G rs74006013 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR22 163154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5784427 5784427 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR23A 729627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 138724479 138724479 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR25 388199 hgsc.bcm.edu 37 16 863356 863372 + Frame_Shift_Del DEL GGACGCCGGACCGACAC GGACGCCGGACCGACAC - rs113623365 unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 GGACGCCGGACCGACAC GGACGCCGGACCGACAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRR3 80742 broad.mit.edu 37 6 30531904 30531904 + 3'UTR SNP T A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRR5 55615 broad.mit.edu 37 22 45075628 45075628 + 5'UTR SNP C T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRR5L 79899 hgsc.bcm.edu;ucsc.edu 37 11 36397736 36397736 + Intron SNP T T C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2A 7916 broad.mit.edu;hgsc.bcm.edu 37 6 31593611 31593611 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2A 7916 broad.mit.edu;hgsc.bcm.edu 37 6 31595623 31595623 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2A 7916 broad.mit.edu;hgsc.bcm.edu 37 6 31599655 31599655 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2A 7916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31594808 31594808 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2A 7916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31598498 31598498 + Silent SNP C C A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2A 7916 hgsc.bcm.edu 37 6 31593814 31593815 + Frame_Shift_Ins INS - - G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2B 84726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134350077 134350077 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2B 84726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134351306 134351306 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2B 84726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134357757 134357757 + Splice_Site SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2B 84726 hgsc.bcm.edu;ucsc.edu 37 9 134323058 134323058 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171509126 171509126 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171510332 171510332 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171510546 171510546 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171556219 171556219 + Silent SNP T T A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171560943 171560943 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRC2C 23215 hgsc.bcm.edu 37 1 171511149 171511149 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRG2 5639 hgsc.bcm.edu 37 19 50093217 50093218 + In_Frame_Ins INS - - CCACCC novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRG3 79057 broad.mit.edu;hgsc.bcm.edu 37 X 150869198 150869198 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRG3 79057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 150868604 150868604 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRG3 79057 hgsc.bcm.edu 37 X 150867342 150867342 + Intron SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRRG3(dist=11639) 0 hgsc.bcm.edu;ucsc.edu 37 X 150881702 150881702 + IGR SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRG3(dist=4435) 0 hgsc.bcm.edu;ucsc.edu 37 X 150874498 150874498 + IGR SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRG3(dist=4454) 0 hgsc.bcm.edu;ucsc.edu 37 X 150874517 150874517 + IGR SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRT1 80863 broad.mit.edu;hgsc.bcm.edu 37 6 32117130 32117130 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRRT2 112476 hgsc.bcm.edu 37 16 29825764 29825764 + Silent SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRRX1 5396 broad.mit.edu 37 1 170695367 170695367 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS12 8492 hgsc.bcm.edu;ucsc.edu 37 4 119239601 119239601 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS1 5644 broad.mit.edu 37 7 142458829 142458829 + Intron SNP A G G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS1 5644 broad.mit.edu 37 7 142458842 142458842 + Intron DEL T - - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS1 5644 broad.mit.edu 37 7 142459337 142459337 + Intron DEL T - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS1 5644 broad.mit.edu;hgsc.bcm.edu 37 7 142458497 142458497 + Silent SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS1 5644 hgsc.bcm.edu 37 7 142457343 142457343 + Missense_Mutation SNP C C T rs143974175 byfrequency TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS1 5644 hgsc.bcm.edu 37 7 142457347 142457347 + Silent SNP C C T rs146454344 byfrequency TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS1 5644 hgsc.bcm.edu 37 7 142459716 142459716 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS1 5644 hgsc.bcm.edu 37 7 142460415 142460415 + Silent SNP T T C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS1 5644 hgsc.bcm.edu 37 7 142460744 142460744 + Missense_Mutation SNP G G C rs150930992 byfrequency TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS16 10279 broad.mit.edu 37 6 27215513 27215513 + 5'UTR SNP C G G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS16 10279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27222582 27222582 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS16 10279 hgsc.bcm.edu 37 6 27216900 27216900 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS16 10279 hgsc.bcm.edu 37 6 27216901 27216901 + Silent SNP A A C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS16 10279 hgsc.bcm.edu 37 6 27218496 27218497 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS16 10279 hgsc.bcm.edu;ucsc.edu 37 6 27223065 27223079 + In_Frame_Del DEL AAGGAGAGCCAGATT AAGGAGAGCCAGATT - rs141138864 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 AAGGAGAGCCAGATT AAGGAGAGCCAGATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS16 10279 hgsc.bcm.edu;ucsc.edu 37 6 27223065 27223079 + In_Frame_Del DEL AAGGAGAGCCAGATT AAGGAGAGCCAGATT - rs141138864 bycluster;by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 AAGGAGAGCCAGATT AAGGAGAGCCAGATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS21 10942 broad.mit.edu 37 16 2867459 2867459 + Splice_Site SNP T G G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS21 10942 broad.mit.edu;ucsc.edu 37 16 2871075 2871075 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS22 64063 hgsc.bcm.edu 37 16 2905796 2905796 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS27 83886 broad.mit.edu 37 16 2764245 2764245 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS3 5646 hgsc.bcm.edu 37 9 33797833 33797833 + Silent SNP C C T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS3 5646 hgsc.bcm.edu 37 9 33798079 33798079 + Silent SNP T T C rs144845866 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS3 5646 hgsc.bcm.edu 37 9 33799094 33799094 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS3 5646 hgsc.bcm.edu;ucsc.edu 37 9 33798574 33798574 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS36 146547 broad.mit.edu;hgsc.bcm.edu 37 16 31160816 31160816 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS37 136242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 141540818 141540818 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS37 136242 hgsc.bcm.edu 37 7 141536964 141536964 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS38 339501 broad.mit.edu;hgsc.bcm.edu 37 1 228033920 228033920 + 3'UTR SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS38 339501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228004909 228004909 + Splice_Site SNP G G T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS38 339501 hgsc.bcm.edu;ucsc.edu 37 1 228033865 228033866 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS38 339501 hgsc.bcm.edu;ucsc.edu 37 1 228033871 228033871 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS41 360226 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2849526 2849526 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS42 339906 hgsc.bcm.edu;ucsc.edu 37 3 46873491 46873491 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS45 377047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 46783933 46783933 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS45 377047 broad.mit.edu 37 3 46783664 46783665 + 3'UTR INS - CCAAGG CCAAGG rs112576071 bycluster;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS48 345062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 152212274 152212274 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS48 345062 hgsc.bcm.edu 37 4 152201018 152201019 + Frame_Shift_Ins INS - - CAGGT novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRSS50 29122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 46754550 46754550 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS50 29122 broad.mit.edu 37 3 46753884 46753884 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRSS54 221191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58314590 58314590 + Silent SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS55 203074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10396087 10396087 + Silent SNP C C A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRSS55 203074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10396087 10396087 + Silent SNP C C G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTFDC1 56952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 25145923 25145923 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTG 283659 broad.mit.edu 37 15 55910931 55910931 + 3'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRTG 283659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55912369 55912369 + Silent SNP T T A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTG 283659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55964783 55964783 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTG 283659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55965850 55965850 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTG 283659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56032778 56032778 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTG 283659 hgsc.bcm.edu 37 15 56032872 56032872 + Silent SNP G G A rs77118243 byfrequency;by1000genomes TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRTG 283659 hgsc.bcm.edu;ucsc.edu 37 15 55912246 55912246 + Silent SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRTG 283659 hgsc.bcm.edu;ucsc.edu 37 15 55912369 55912369 + Silent SNP T T A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRTG 283659 hgsc.bcm.edu;ucsc.edu 37 15 55931919 55931919 + Missense_Mutation SNP C C T rs144541725 by1000genomes TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRTG 283659 hgsc.bcm.edu;ucsc.edu 37 15 55971529 55971529 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 broad.mit.edu 37 9 79469063 79469063 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79318764 79318764 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79325303 79325303 + Silent SNP G G T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79438564 79438564 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79438565 79438565 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79461509 79461509 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 hgsc.bcm.edu 37 9 79318381 79318381 + Silent SNP A A T rs113471142 unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRUNE2 158471 hgsc.bcm.edu 37 9 79318381 79318381 + Silent SNP A A T rs113471142 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRUNE2 158471 hgsc.bcm.edu 37 9 79324135 79324136 + In_Frame_Ins INS - - TGACTGTTGCAG rs11267622 bycluster;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 hgsc.bcm.edu 37 9 79324135 79324136 + In_Frame_Ins INS - - TGACTGTTGCAG rs11267622 bycluster;by1000genomes TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 hgsc.bcm.edu;ucsc.edu 37 9 79323220 79323220 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 hgsc.bcm.edu;ucsc.edu 37 9 79324116 79324116 + Nonsense_Mutation SNP G G C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE2 158471 hgsc.bcm.edu;ucsc.edu 37 9 79465427 79465427 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRUNE 58497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151001376 151001376 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRUNE 58497 hgsc.bcm.edu;ucsc.edu 37 1 150981137 150981138 + Frame_Shift_Ins INS - - TGCT novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRX 57716 broad.mit.edu 37 19 40900148 40900148 + Silent SNP G T T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRX 57716 broad.mit.edu 37 19 40903927 40903927 + Intron SNP G T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PRX 57716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40900919 40900919 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRX 57716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40901528 40901528 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRX 57716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40903260 40903260 + Silent SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PRX 57716 hgsc.bcm.edu 37 19 40902439 40902439 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRX 57716 hgsc.bcm.edu 37 19 40902612 40902612 + Silent SNP C C G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRX 57716 hgsc.bcm.edu 37 19 40902613 40902613 + Missense_Mutation SNP G G A rs150582069 unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PRX 57716 hgsc.bcm.edu 37 19 40902613 40902613 + Missense_Mutation SNP G G A rs150582069 unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSAP 5660 hgsc.bcm.edu 37 10 73590880 73590880 + Intron SNP T T C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSAP 5660 hgsc.bcm.edu;ucsc.edu 37 10 73579621 73579621 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSAPL1 768239 broad.mit.edu 37 4 7436245 7436245 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSAT1 29968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 80923397 80923397 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSD2 84249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139193067 139193067 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSD2 84249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139217290 139217290 + Silent SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSD3 23362 broad.mit.edu 37 8 18392906 18392906 + 3'UTR DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSD3 23362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 18413784 18413784 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSD3 23362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 18662289 18662289 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSD3 23362 hgsc.bcm.edu 37 8 18662356 18662356 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSD3 23362 hgsc.bcm.edu 37 8 18662356 18662356 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSD3 23362 hgsc.bcm.edu 37 8 18725300 18725300 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSD4 23550 hgsc.bcm.edu 37 2 113940101 113940101 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSD4 23550 hgsc.bcm.edu 37 2 113940963 113940963 + Silent SNP T T G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSD4 23550 hgsc.bcm.edu 37 2 113942954 113942954 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSD4 23550 hgsc.bcm.edu;ucsc.edu 37 2 113942578 113942578 + Silent SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSD4 23550 hgsc.bcm.edu;ucsc.edu 37 2 113943717 113943717 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSEN1 5663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73685985 73685985 + Silent SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSEN2 5664 broad.mit.edu;hgsc.bcm.edu 37 1 227073330 227073330 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSEN2 5664 hgsc.bcm.edu 37 1 227076706 227076706 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSEN2 5664 hgsc.bcm.edu;ucsc.edu 37 1 227076606 227076606 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSENEN 55851 broad.mit.edu 37 19 36236501 36236501 + 5'UTR SNP A T T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSENEN 55851 broad.mit.edu;ucsc.edu 37 19 36237651 36237651 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG11 5680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43519423 43519423 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG1 5669 broad.mit.edu 37 19 43348720 43348720 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG1 5669 broad.mit.edu 37 19 43358110 43358110 + Intron SNP T G G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG1 5669 broad.mit.edu 37 19 43358131 43358131 + Intron SNP C T T rs183489257 by1000genomes TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG1 5669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43376181 43376181 + Silent SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG3 5671 broad.mit.edu 37 19 43234081 43234081 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG3 5671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43228148 43228148 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG3 5671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43243171 43243171 + Silent SNP A A T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG4 5672 hgsc.bcm.edu;ucsc.edu 37 19 43699379 43699379 + Silent SNP T T C rs3928381 by1000genomes TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSG5 5673 broad.mit.edu 37 19 43690641 43690641 + 5'UTR SNP C A A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG5 5673 broad.mit.edu;hgsc.bcm.edu 37 19 43679580 43679580 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG5 5673 broad.mit.edu;hgsc.bcm.edu 37 19 43680096 43680096 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG6 5675 broad.mit.edu;hgsc.bcm.edu 37 19 43407789 43407789 + 3'UTR SNP C C G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG6 5675 broad.mit.edu;hgsc.bcm.edu 37 19 43407790 43407790 + 3'UTR SNP C C T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG6 5675 broad.mit.edu;hgsc.bcm.edu 37 19 43415010 43415010 + Missense_Mutation SNP G G A rs186311462 by1000genomes TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG6 5675 hgsc.bcm.edu 37 19 43407891 43407891 + Intron SNP A A C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG7 5676 broad.mit.edu 37 19 43428847 43428847 + 3'UTR SNP C A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG7 5676 broad.mit.edu 37 19 43441318 43441318 + 5'UTR SNP C T T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG8 440533 broad.mit.edu 37 19 43257324 43257324 + 3'UTR SNP T G G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG8 440533 broad.mit.edu 37 19 43257330 43257330 + 3'UTR SNP T G G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSG8 440533 broad.mit.edu;hgsc.bcm.edu 37 19 43262176 43262176 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSG9 5678 hgsc.bcm.edu;ucsc.edu 37 19 43772159 43772159 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSIP1 11168 broad.mit.edu 37 9 15465782 15465783 + Intron INS - CCAAA CCAAA novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx psiTPTE22 0 broad.mit.edu 37 22 17119476 17119476 + RNA SNP G A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSKH1 5681 hgsc.bcm.edu 37 16 67942656 67942656 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSKH1 5681 hgsc.bcm.edu 37 16 67943579 67943579 + Silent SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSKH1 5681 hgsc.bcm.edu;ucsc.edu 37 16 67942857 67942857 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSKH2 85481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87060713 87060713 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA1 5682 broad.mit.edu 37 11 14535543 14535543 + Intron SNP T G G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMA1 5682 hgsc.bcm.edu;ucsc.edu 37 11 14632540 14632540 + Intron SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMA2 5683 broad.mit.edu 37 7 42958801 42958801 + Intron SNP T C C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMA2 5683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42964387 42964387 + Silent SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA3 5684 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58714515 58714515 + Silent SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA3 5684 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58737146 58737146 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA3 5684 hgsc.bcm.edu 37 14 58724704 58724705 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA3 5684 hgsc.bcm.edu 37 14 58737221 58737221 + Intron SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMA4 5685 broad.mit.edu 37 15 78838990 78838990 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMA4 5685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78834926 78834926 + Missense_Mutation SNP C C A rs149336836 unknown;alternate_allele TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA5 5686 broad.mit.edu 37 1 109969033 109969033 + 5'UTR SNP C G G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMA6 5687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 35761756 35761756 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA6 5687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 35777199 35777199 + Splice_Site SNP G G C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA6 5687 hgsc.bcm.edu;ucsc.edu 37 14 35777217 35777217 + Missense_Mutation SNP A A C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMA8 143471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 23714010 23714010 + Silent SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMB10 5699 broad.mit.edu 37 16 67968459 67968459 + 3'UTR SNP C T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMB10 5699 hgsc.bcm.edu 37 16 67970653 67970653 + 5'UTR SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMB11 122706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23511526 23511526 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMB11 122706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23511574 23511574 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMB2 5690 broad.mit.edu 37 1 36036188 36036188 + 3'UTR DEL A - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMB4 5692 broad.mit.edu 37 1 151373481 151373481 + Intron SNP C T T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMB4 5692 hgsc.bcm.edu;ucsc.edu 37 1 151372944 151372945 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMB5 5693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23504076 23504076 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMB7 5695 broad.mit.edu 37 9 127118949 127118949 + Intron SNP A C C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMB7 5695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 127177673 127177673 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMB8 5696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32808790 32808790 + Silent SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMC1 5700 broad.mit.edu 37 14 90730104 90730104 + Silent SNP T G G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMC1 5700 broad.mit.edu;hgsc.bcm.edu 37 14 90730154 90730154 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMC2 5701 broad.mit.edu 37 7 103002873 103002873 + Intron DEL A - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMC2 5701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 103008447 103008447 + Silent SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMC2 5701 hgsc.bcm.edu;ucsc.edu 37 7 103004703 103004703 + Silent SNP G G T rs144680798 unknown;alternate_allele TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMC4 5704 hgsc.bcm.edu 37 19 40480501 40480501 + Silent SNP C C T rs11542840 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMC5 5705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61907491 61907491 + Splice_Site SNP A A G novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMC5 5705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61908394 61908394 + Splice_Site SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMC5 5705 hgsc.bcm.edu 37 17 61906877 61906877 + Silent SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMC5 5705 hgsc.bcm.edu 37 17 61906877 61906877 + Silent SNP A A G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMC6 5706 broad.mit.edu 37 14 53185145 53185145 + Intron SNP C G G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMC6 5706 broad.mit.edu;hgsc.bcm.edu 37 14 53187597 53187597 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMD11 5717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30806900 30806900 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMD13 5719 broad.mit.edu 37 11 252816 252816 + 3'UTR DEL G - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMD13 5719 hgsc.bcm.edu 37 11 244167 244167 + Silent SNP C C T rs1128320 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMD1 5707 hgsc.bcm.edu;ucsc.edu 37 2 231937037 231937037 + Silent SNP T T A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMD2 5708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184019697 184019697 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMD2 5708 hgsc.bcm.edu 37 3 184022099 184022099 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMD3 5709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38153787 38153787 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMD4 5710 hgsc.bcm.edu;ucsc.edu 37 1 151236485 151236485 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMD6 9861 broad.mit.edu;hgsc.bcm.edu 37 3 64007994 64007994 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSMD7 5713 hgsc.bcm.edu;ucsc.edu 37 16 74334042 74334042 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSMD9 5715 broad.mit.edu;hgsc.bcm.edu 37 12 122354264 122354264 + 3'UTR SNP A A G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSME3 10197 broad.mit.edu 37 17 40986168 40986168 + Intron SNP T G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSME3 10197 broad.mit.edu 37 17 40986168 40986168 + Intron SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSME3 10197 broad.mit.edu 37 17 40986168 40986168 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSME3 10197 broad.mit.edu 37 17 40986168 40986168 + Intron SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSME3 10197 hgsc.bcm.edu 37 17 40985648 40985648 + 5'UTR SNP C C T rs139945697 byfrequency TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSME3 10197 hgsc.bcm.edu 37 17 40989729 40989729 + Intron SNP T T C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSME3 10197 hgsc.bcm.edu 37 17 40990734 40990734 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSME4 23198 broad.mit.edu 37 2 54176396 54176396 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSMF1 9491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1144992 1144992 + Silent SNP C C T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSPH 5723 hgsc.bcm.edu;ucsc.edu 37 7 56088907 56088907 + 5'UTR SNP G G C novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSRC1 84722 broad.mit.edu 37 1 109825408 109825408 + Intron SNP G A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PSRC1 84722 hgsc.bcm.edu 37 1 109824319 109824319 + Silent SNP T T G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PSTK 118672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124742525 124742525 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PSTPIP2 9050 broad.mit.edu;hgsc.bcm.edu 37 18 43572169 43572169 + Splice_Site SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTAFR 5724 hgsc.bcm.edu 37 1 28476738 28476738 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTAR1 375743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 72338284 72338284 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTAR1 375743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 72338543 72338543 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTBP1 5725 hgsc.bcm.edu 37 19 808433 808433 + Silent SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTBP2 58155 broad.mit.edu 37 1 97279080 97279080 + 3'UTR DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTBP2 58155 broad.mit.edu 37 1 97279080 97279080 + 3'UTR DEL T - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTBP2 58155 broad.mit.edu;ucsc.edu 37 1 97236294 97236294 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTCD1 26024 broad.mit.edu;hgsc.bcm.edu 37 7 99022964 99022964 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCD1 26024 hgsc.bcm.edu 37 7 99022803 99022803 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCD3 55037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86359530 86359530 + Silent SNP A A G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCD3 55037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86361451 86361451 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCH1 5727 broad.mit.edu 37 9 98278898 98278898 + 5'UTR SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTCH1 5727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 98209386 98209386 + Silent SNP C C G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTCH1 5727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 98220440 98220440 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCH1 5727 hgsc.bcm.edu 37 9 98211564 98211564 + Silent SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu 37 9 98231217 98231217 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu 37 9 98231217 98231217 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu 37 9 98239880 98239880 + Silent SNP T T C novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu 37 9 98240363 98240363 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu 37 9 98240434 98240434 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu 37 9 98242754 98242754 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH1 5727 hgsc.bcm.edu;ucsc.edu 37 9 98240433 98240433 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTCH2 8643 broad.mit.edu;hgsc.bcm.edu 37 1 45288276 45288276 + Silent SNP A A T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCH2 8643 hgsc.bcm.edu 37 1 45292921 45292921 + Missense_Mutation SNP C C A rs112613379 unknown;alternate_allele TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID PTCHD1 139411 broad.mit.edu 37 X 23398406 23398406 + Intron SNP G A A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTCHD1 139411 broad.mit.edu;hgsc.bcm.edu 37 X 23398416 23398416 + Intron SNP A A C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD1 139411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23410647 23410647 + Splice_Site SNP G G C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu 37 1 11579864 11579864 + Silent SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11594487 11594487 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11594488 11594488 + Silent SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11594491 11594491 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD2 57540 broad.mit.edu;ucsc.edu 37 1 11579432 11579432 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTCHD2 57540 hgsc.bcm.edu 37 1 11589932 11589933 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD3 374308 broad.mit.edu 37 10 27702296 27702296 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTCHD3 374308 broad.mit.edu;hgsc.bcm.edu 37 10 27702370 27702370 + Silent SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD3 374308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27702183 27702183 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTCHD3 374308 hgsc.bcm.edu;ucsc.edu 37 10 27688016 27688016 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTDSS1 9791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 97342498 97342498 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTDSS1 9791 broad.mit.edu;ucsc.edu 37 8 97316399 97316399 + Missense_Mutation SNP T A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89692880 89692893 + Frame_Shift_Del DEL ATTCACTGTAAAGC ATTCACTGTAAAGC - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 ATTCACTGTAAAGC ATTCACTGTAAAGC ATTCACTGTAAAGC - ATTCACTGTAAAGC ATTCACTGTAAAGC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89717762 89717762 + Nonsense_Mutation SNP A A T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89720677 89720677 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T T G T T Unknown Unknown Somatic Phase_I Capture PGM Illumina HiSeq PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89725043 89725043 + Splice_Site SNP G G A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTEN 5728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 89711891 89711891 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTEN 5728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 89712017 89712017 + Splice_Site SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTEN 5728 hgsc.bcm.edu 37 10 89692884 89692884 + Missense_Mutation SNP A A T rs121909222 unknown;alternate_allele TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID PTEN 5728 hgsc.bcm.edu 37 10 89692891 89692891 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID PTEN 5728 hgsc.bcm.edu 37 10 89692949 89692949 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTEN 5728 hgsc.bcm.edu 37 10 89711969 89711970 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - - C - - Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq PTEN 5728 hgsc.bcm.edu 37 10 89720799 89720802 + Frame_Shift_Del DEL TACT TACT - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 TACT TACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89653858 89653860 + In_Frame_Del DEL TGT TGT - novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 TGT TGT TGT - TGT TGT Unknown Valid Somatic Phase_I Capture 454 SOLID PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89653859 89653861 + In_Frame_Del DEL GTA GTA - novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 GTA GTA GTA - GTA GTA Unknown Valid Somatic Phase_I Capture PGM SOLID PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89690806 89690806 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM SOLID PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89692905 89692905 + Missense_Mutation SNP G G A rs121909229 bycluster TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89692920 89692921 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89711910 89711910 + Nonsense_Mutation SNP T T G novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89720744 89720744 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM SOLID PTENP1 11191 broad.mit.edu 37 9 33675588 33675588 + Silent SNP C T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTER 9317 hgsc.bcm.edu;ucsc.edu 37 10 16547025 16547025 + Silent SNP T T C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTF1A 256297 broad.mit.edu 37 10 23482992 23482994 + 3'UTR DEL GAT - - rs149560393 bycluster;by1000genomes TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 GAT GAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTGDR 5729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 52741643 52741643 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGDR 5729 hgsc.bcm.edu 37 14 52735100 52735100 + Nonsense_Mutation SNP G G T rs139745811 unknown;alternate_allele TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGDS 5730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139873535 139873535 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGER2 5732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 52782081 52782081 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGER3 5733 broad.mit.edu 37 1 71437325 71437325 + Intron SNP A C C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTGER3 5733 hgsc.bcm.edu;ucsc.edu 37 1 71328117 71328117 + RNA SNP A A T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGER4 5734 hgsc.bcm.edu;ucsc.edu 37 5 40692474 40692475 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGES 9536 broad.mit.edu 37 9 132502051 132502051 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTGFR 5737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78958841 78958841 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGFR 5737 hgsc.bcm.edu 37 1 78958515 78958515 + Silent SNP C C A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGFR 5737 hgsc.bcm.edu 37 1 78958515 78958515 + Silent SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGFR 5737 hgsc.bcm.edu;ucsc.edu 37 1 78958563 78958563 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGFRN 5738 broad.mit.edu 37 1 117529859 117529860 + 3'UTR INS - T T rs3841437 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTGFRN 5738 hgsc.bcm.edu 37 1 117484595 117484595 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGIR 5739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47124908 47124908 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGIS 5740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 48130813 48130813 + Silent SNP C C T rs140787750 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGR1 22949 broad.mit.edu 37 9 114325790 114325791 + Intron DEL TT - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTGR1 22949 hgsc.bcm.edu;ucsc.edu 37 9 114356473 114356473 + Intron SNP A A T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGR2 145482 broad.mit.edu;hgsc.bcm.edu 37 14 74350885 74350885 + 3'UTR SNP T T A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGR2 145482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74327307 74327307 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGS1 5742 broad.mit.edu 37 9 125133419 125133419 + Intron SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTGS1 5742 hgsc.bcm.edu;ucsc.edu 37 9 125140798 125140798 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGS2 5743 broad.mit.edu;hgsc.bcm.edu 37 1 186646956 186646956 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGS2 5743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186643675 186643675 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGS2 5743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186645102 186645102 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTGS2 5743 hgsc.bcm.edu;ucsc.edu 37 1 186646028 186646028 + Silent SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTGS2 5743 hgsc.bcm.edu;ucsc.edu 37 1 186646828 186646828 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTH1R 5745 broad.mit.edu 37 3 46945264 46945264 + 3'UTR DEL A - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTH1R 5745 broad.mit.edu;ucsc.edu 37 3 46939429 46939429 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTH1R 5745 hgsc.bcm.edu 37 3 46939910 46939910 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTK2 5747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141712777 141712777 + Silent SNP G G T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTK2 5747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141727751 141727751 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTK2 5747 hgsc.bcm.edu 37 8 141745400 141745400 + Silent SNP G G T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID PTK2 5747 hgsc.bcm.edu 37 8 141856340 141856340 + Intron SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTK2B 2185 broad.mit.edu 37 8 27309209 27309209 + Intron DEL C - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTK2B 2185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27296898 27296898 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTK2B 2185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27301762 27301762 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTK2B 2185 hgsc.bcm.edu 37 8 27295368 27295368 + Silent SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTK2B 2185 hgsc.bcm.edu;ucsc.edu 37 8 27308983 27308983 + Intron SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTK6 5753 broad.mit.edu 37 20 62164170 62164170 + Intron DEL C - - rs142590975 bycluster;by1000genomes TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTK6 5753 broad.mit.edu 37 20 62164170 62164170 + Intron DEL C - - rs142590975 bycluster;by1000genomes TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTK6 5753 hgsc.bcm.edu;ucsc.edu 37 20 62164915 62164915 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTK7 5754 broad.mit.edu 37 6 43107148 43107148 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTK7 5754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43107181 43107181 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTK7 5754 hgsc.bcm.edu;ucsc.edu 37 6 43109480 43109480 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTMA 5757 broad.mit.edu 37 2 232577877 232577877 + 3'UTR SNP A G G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTMS 5763 broad.mit.edu 37 12 6879676 6879676 + 3'UTR SNP T C C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTMS 5763 broad.mit.edu 37 12 6879708 6879708 + 3'UTR SNP G A A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTN 5764 broad.mit.edu 37 7 136912464 136912464 + 3'UTR DEL A - - rs145908029 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTOV1 53635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50358129 50358129 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTOV1 53635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50358311 50358311 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTP4A2 8073 broad.mit.edu 37 1 32384928 32384928 + 5'UTR DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTP4A2 8073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32377374 32377374 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTP4A3 11156 hgsc.bcm.edu;ucsc.edu 37 8 142437880 142437880 + Silent SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPDC1 138639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96860800 96860800 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPDC1 138639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96863956 96863956 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPDC1 138639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96870182 96870183 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPDC1 138639 broad.mit.edu;ucsc.edu 37 9 96859671 96859671 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPLA 9200 broad.mit.edu 37 10 17632097 17632097 + 3'UTR DEL T - - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPLB 201562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123301066 123301066 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPMT1 114971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47593082 47593082 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN11 5781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112891015 112891015 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPN11 5781 hgsc.bcm.edu 37 12 112893798 112893798 + Silent SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID PTPN11 5781 hgsc.bcm.edu;ucsc.edu 37 12 112892409 112892409 + Silent SNP T T C novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN12 5782 broad.mit.edu 37 7 77166962 77166962 + Missense_Mutation SNP G A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN12 5782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 77256021 77256021 + Splice_Site SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN12 5782 hgsc.bcm.edu 37 7 77256330 77256330 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN12 5782 hgsc.bcm.edu;ucsc.edu 37 7 77227148 77227148 + Intron SNP T T A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN12 5782 hgsc.bcm.edu;ucsc.edu 37 7 77256100 77256100 + Silent SNP T T G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN12 5782 hgsc.bcm.edu;ucsc.edu 37 7 77256343 77256343 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87653571 87653571 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87662898 87662898 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87662970 87662970 + Splice_Site SNP G G T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87679432 87679432 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87684097 87684097 + Silent SNP T T A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87692395 87692395 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87696460 87696460 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN13 5783 broad.mit.edu;ucsc.edu 37 4 87643378 87643378 + Missense_Mutation SNP A C C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN14 5784 broad.mit.edu 37 1 214656164 214656164 + Intron SNP A G G rs75164684 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN14 5784 broad.mit.edu 37 1 214656193 214656193 + Intron SNP C G G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN14 5784 broad.mit.edu 37 1 214656561 214656561 + Intron SNP C A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN14 5784 broad.mit.edu 37 1 214656676 214656676 + Intron SNP A C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN14 5784 broad.mit.edu 37 1 214656740 214656740 + Intron SNP A G G rs78564084 bycluster TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN14 5784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214549669 214549669 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN14 5784 hgsc.bcm.edu;ucsc.edu 37 1 214557759 214557759 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN1 5770 broad.mit.edu;hgsc.bcm.edu 37 20 49196426 49196426 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN18 26469 broad.mit.edu 37 2 131129929 131129934 + In_Frame_Del DEL GACGGG - - rs112040677 bycluster;by1000genomes TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 GACGGG GACGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN18 26469 broad.mit.edu 37 2 131129929 131129934 + In_Frame_Del DEL GACGGG - - rs112040677 bycluster;by1000genomes TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 GACGGG GACGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN18 26469 broad.mit.edu 37 2 131129929 131129934 + In_Frame_Del DEL GACGGG - - rs112040677 bycluster;by1000genomes TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 GACGGG GACGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN18 26469 broad.mit.edu 37 2 131131481 131131482 + 3'UTR INS - AGTC AGTC rs10632536 bycluster;by1000genomes TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN18 26469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131116984 131116984 + Silent SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN18 26469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131128788 131128788 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN18 26469 hgsc.bcm.edu;ucsc.edu 37 2 131128292 131128292 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN18 26469 hgsc.bcm.edu;ucsc.edu 37 2 131128530 131128530 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN21 11099 broad.mit.edu 37 14 88946198 88946198 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN21 11099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88983493 88983493 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN21 11099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88983531 88983531 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN22 26191 broad.mit.edu;hgsc.bcm.edu 37 1 114394727 114394727 + Splice_Site SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPN23 25930 hgsc.bcm.edu 37 3 47449932 47449932 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN2 5771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 12814354 12814354 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN3 5774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 112172526 112172526 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN3 5774 hgsc.bcm.edu 37 9 112151594 112151594 + Silent SNP G G C novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN3 5774 hgsc.bcm.edu 37 9 112151594 112151594 + Silent SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN4 5775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120718482 120718482 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN4 5775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120720267 120720267 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN4 5775 hgsc.bcm.edu;ucsc.edu 37 2 120690059 120690060 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN4 5775 hgsc.bcm.edu;ucsc.edu 37 2 120709630 120709630 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN5 84867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18750477 18750477 + 3'UTR SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN5 84867 broad.mit.edu;ucsc.edu 37 11 18764949 18764949 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN5 84867 hgsc.bcm.edu 37 11 18750997 18750997 + Intron SNP G G T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN5 84867 hgsc.bcm.edu 37 11 18751361 18751361 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN5 84867 hgsc.bcm.edu 37 11 18787397 18787397 + Silent SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN6 5777 broad.mit.edu 37 12 7069507 7069507 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPN6 5777 hgsc.bcm.edu 37 12 7061265 7061265 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPN6 5777 hgsc.bcm.edu;ucsc.edu 37 12 7064112 7064112 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPN7 5778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202117740 202117740 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRA 5786 hgsc.bcm.edu 37 20 3016252 3016252 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRB 5787 broad.mit.edu;hgsc.bcm.edu 37 12 70953090 70953090 + Intron SNP T T G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRB 5787 broad.mit.edu;hgsc.bcm.edu 37 12 71029653 71029653 + Silent SNP G G T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRB 5787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 70965011 70965011 + Silent SNP C C T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRB 5787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 70983898 70983898 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRB 5787 broad.mit.edu;ucsc.edu 37 12 70970258 70970258 + Frame_Shift_Del DEL A - - novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRB 5787 hgsc.bcm.edu 37 12 70960250 70960250 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRC 5788 broad.mit.edu;hgsc.bcm.edu 37 1 198687258 198687258 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRC 5788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 198678874 198678874 + Missense_Mutation SNP G G C rs139425744 unknown;alternate_allele TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRC 5788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 198678876 198678876 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRC 5788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 198687389 198687389 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRC 5788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 198687421 198687421 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRC 5788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 198723495 198723495 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRC 5788 hgsc.bcm.edu;ucsc.edu 37 1 198704330 198704330 + Silent SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID PTPRCAP 5790 broad.mit.edu 37 11 67203476 67203476 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRD 5789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 8500875 8500875 + Silent SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRD 5789 hgsc.bcm.edu;ucsc.edu 37 9 8507401 8507401 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRD 5789 hgsc.bcm.edu;ucsc.edu 37 9 8526592 8526592 + Intron SNP A A C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRE 5791 hgsc.bcm.edu 37 10 129859291 129859291 + Intron SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRF 5792 broad.mit.edu 37 1 44064327 44064327 + Intron SNP T C C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRF 5792 broad.mit.edu 37 1 44087698 44087698 + 3'UTR SNP A C C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRF 5792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44070946 44070946 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRF 5792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44085866 44085866 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRF 5792 hgsc.bcm.edu 37 1 44086831 44086831 + Silent SNP C C T rs1143702 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRF 5792 hgsc.bcm.edu;ucsc.edu 37 1 44057602 44057602 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRG 5793 broad.mit.edu 37 3 62109908 62109908 + Intron SNP C T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRG 5793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 62258667 62258667 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRG 5793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 62268432 62268432 + Frame_Shift_Del DEL C C - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRH 5794 broad.mit.edu;hgsc.bcm.edu 37 19 55713578 55713578 + Silent SNP C C T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRH 5794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55693237 55693237 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRH 5794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55710122 55710122 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRJ 5795 broad.mit.edu 37 11 48153229 48153229 + Intron SNP G C C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRJ 5795 broad.mit.edu 37 11 48189154 48189154 + 3'UTR DEL T - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRJ 5795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 48152101 48152101 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRJ 5795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 48166241 48166241 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRJ 5795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 48166268 48166268 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRJ 5795 hgsc.bcm.edu;ucsc.edu 37 11 48171013 48171013 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID PTPRK 5796 broad.mit.edu 37 6 128318045 128318045 + Splice_Site SNP C T T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRK 5796 broad.mit.edu;hgsc.bcm.edu 37 6 128318044 128318044 + Splice_Site SNP A A G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRK 5796 hgsc.bcm.edu;ucsc.edu 37 6 128643199 128643199 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRM 5797 broad.mit.edu 37 18 8253332 8253332 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRM 5797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7955120 7955120 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRM 5797 broad.mit.edu;ucsc.edu 37 18 8113697 8113697 + Silent SNP T A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRM 5797 hgsc.bcm.edu 37 18 7955227 7955227 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRM 5797 hgsc.bcm.edu 37 18 8252457 8252457 + Intron SNP T T A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRN2 5799 broad.mit.edu 37 7 158332705 158332705 + Intron DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRN2 5799 broad.mit.edu;hgsc.bcm.edu 37 7 157985188 157985188 + Splice_Site SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRN2 5799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 157475557 157475557 + Missense_Mutation SNP C C G rs144004975 unknown;alternate_allele TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRN2 5799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 157985057 157985057 + Missense_Mutation SNP C C T rs137877535 bycluster;by1000genomes TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRN 5798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220159737 220159737 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRN 5798 hgsc.bcm.edu 37 2 220159785 220159785 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRN 5798 hgsc.bcm.edu 37 2 220161555 220161555 + Intron SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRO 5800 hgsc.bcm.edu 37 12 15661567 15661567 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRQ 374462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80839468 80839468 + Missense_Mutation SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRQ 374462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80887186 80887186 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRQ 374462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80890073 80890073 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRQ 374462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80940449 80940449 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRQ 374462 hgsc.bcm.edu 37 12 80943506 80943523 + In_Frame_Del DEL TGAAACAGGTAACTAACG TGAAACAGGTAACTAACG - rs141686707 by1000genomes TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 TGAAACAGGTAACTAACG TGAAACAGGTAACTAACG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRQ 374462 hgsc.bcm.edu 37 12 80943506 80943523 + In_Frame_Del DEL TGAAACAGGTAACTAACG TGAAACAGGTAACTAACG - rs141686707 by1000genomes TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 TGAAACAGGTAACTAACG TGAAACAGGTAACTAACG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRR 5801 broad.mit.edu 37 12 71032764 71032764 + 3'UTR DEL G - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRR 5801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 71033004 71033004 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRR 5801 hgsc.bcm.edu 37 12 71092114 71092114 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRR 5801 hgsc.bcm.edu 37 12 71314149 71314149 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRS 5802 broad.mit.edu 37 19 5231368 5231368 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRS 5802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5214437 5214437 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRS 5802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5219380 5219380 + Silent SNP C C G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRS 5802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5244419 5244419 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRS 5802 hgsc.bcm.edu 37 19 5262937 5262937 + Intron SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRT 11122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40713330 40713330 + Silent SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRT 11122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40944543 40944543 + Silent SNP C C A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRT 11122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40944544 40944544 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRT 11122 hgsc.bcm.edu 37 20 40714466 40714466 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRT 11122 hgsc.bcm.edu;ucsc.edu 37 20 40727124 40727137 + Frame_Shift_Del DEL CCAGAAGTCTGCCA CCAGAAGTCTGCCA - novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 CCAGAAGTCTGCCA CCAGAAGTCTGCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRT 11122 hgsc.bcm.edu;ucsc.edu 37 20 40864932 40864932 + Intron SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRT 11122 hgsc.bcm.edu;ucsc.edu 37 20 41385109 41385109 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID PTPRU 10076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29585159 29585159 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRU 10076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29611375 29611375 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRU 10076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29638000 29638000 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRU 10076 hgsc.bcm.edu 37 1 29618536 29618536 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRU 10076 hgsc.bcm.edu;ucsc.edu 37 1 29618444 29618444 + Missense_Mutation SNP C C A rs41302038 byfrequency;by1000genomes;alternate_allele TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTPRZ1 5803 broad.mit.edu 37 7 121513383 121513384 + 5'UTR DEL CA - - rs146505882 bycluster;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu 37 7 121637955 121637955 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121650685 121650685 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121651006 121651006 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121651023 121651023 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121651686 121651686 + Silent SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121653811 121653811 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121668608 121668608 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq PTPRZ1 5803 hgsc.bcm.edu 37 7 121651295 121651295 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID PTPRZ1 5803 hgsc.bcm.edu 37 7 121678852 121678852 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PTRF 284119 hgsc.bcm.edu;ucsc.edu 37 17 40556892 40556892 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PTRH2 51651 broad.mit.edu 37 17 57776512 57776513 + Intron DEL GC - - rs79931696 bycluster;by1000genomes TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTTG3P 26255 broad.mit.edu 37 8 67680233 67680233 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PTX3 5806 broad.mit.edu 37 3 157154654 157154654 + 5'UTR SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PUF60 22827 hgsc.bcm.edu 37 8 144899131 144899131 + Silent SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PUF60 22827 hgsc.bcm.edu;ucsc.edu 37 8 144898831 144898831 + Silent SNP G G C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PUM1 9698 broad.mit.edu 37 1 31405847 31405847 + 3'UTR DEL A - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PUM1 9698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 31447563 31447563 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PUM1 9698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 31532415 31532415 + 5'UTR SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PUM1 9698 hgsc.bcm.edu;ucsc.edu 37 1 31479895 31479895 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PUM2 23369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20511383 20511383 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PUM2 23369 broad.mit.edu;ucsc.edu 37 2 20451396 20451396 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PUM2 23369 broad.mit.edu;ucsc.edu 37 2 20451397 20451397 + Silent SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PUM2 23369 hgsc.bcm.edu 37 2 20490431 20490431 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PUM2 23369 hgsc.bcm.edu;ucsc.edu 37 2 20478380 20478380 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PUM2 23369 hgsc.bcm.edu;ucsc.edu 37 2 20527068 20527068 + Intron SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PURA 5813 broad.mit.edu 37 5 139494755 139494756 + 3'UTR DEL CA - - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PURA 5813 broad.mit.edu 37 5 139494774 139494775 + 3'UTR DEL AC - - rs144048243 by1000genomes TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PURG 29942 broad.mit.edu 37 8 30889379 30889379 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PURG 29942 hgsc.bcm.edu;ucsc.edu 37 8 30889951 30889958 + Frame_Shift_Del DEL CTTCAGCT CTTCAGCT - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 CTTCAGCT CTTCAGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PUS3 83480 hgsc.bcm.edu 37 11 125763611 125763611 + 3'UTR SNP T T A rs35782066 unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PUS7 54517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 105111238 105111238 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PUS7 54517 hgsc.bcm.edu 37 7 105135690 105135690 + Silent SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PVALB 5816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37196902 37196902 + 3'UTR SNP A A G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PVRIG 79037 broad.mit.edu 37 7 99818579 99818579 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PVRIG 79037 hgsc.bcm.edu 37 7 99818783 99818783 + Missense_Mutation SNP G G A rs145493958 unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PVRL1 5818 broad.mit.edu 37 11 119510667 119510667 + Silent SNP G T T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PVRL2 5819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45391608 45391608 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PVRL2 5819 hgsc.bcm.edu 37 19 45391485 45391486 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PVRL3 25945 broad.mit.edu 37 3 110837556 110837556 + Missense_Mutation SNP A T T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PVRL3 25945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 110837735 110837735 + Silent SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PVRL3 25945 hgsc.bcm.edu 37 3 110831084 110831084 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PWP1 11137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108082496 108082496 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PWRN2 791115 broad.mit.edu 37 15 24412660 24412661 + RNA INS - G G rs36096292 unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PWWP2A 114825 hgsc.bcm.edu 37 5 159520688 159520688 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1642647 1642647 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1647244 1647244 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1652347 1652347 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1653137 1653137 + Silent SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1664726 1664726 + Silent SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDN 7837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1677555 1677555 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDN 7837 broad.mit.edu;ucsc.edu 37 2 1652062 1652062 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PXDN 7837 hgsc.bcm.edu;ucsc.edu 37 2 1667443 1667443 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PXDNL 137902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52359592 52359592 + Silent SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDNL 137902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52361653 52361653 + Silent SNP G G C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDNL 137902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52370154 52370154 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXDNL 137902 hgsc.bcm.edu;ucsc.edu 37 8 52320891 52320891 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PXN 5829 broad.mit.edu;hgsc.bcm.edu 37 12 120649783 120649783 + 3'UTR SNP A A T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PXN 5829 hgsc.bcm.edu 37 12 120650285 120650285 + Silent SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PYCARD 29108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31213020 31213020 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYCARD 29108 hgsc.bcm.edu 37 16 31213523 31213523 + Silent SNP G G T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYCR1 5831 broad.mit.edu 37 17 79894640 79894640 + Missense_Mutation SNP C G G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PYCR2 29920 broad.mit.edu 37 1 226108045 226108045 + 3'UTR SNP C A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PYCR2 29920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226109762 226109762 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYDC1 260434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31228342 31228342 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYDC2 152138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 191178998 191178998 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYDC2 152138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 191179038 191179038 + Silent SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYGB 5834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 25249816 25249816 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYGB 5834 hgsc.bcm.edu;ucsc.edu 37 20 25260932 25260932 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PYGL 5836 hgsc.bcm.edu;ucsc.edu 37 14 51372121 51372121 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PYGM 5837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64514199 64514199 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYGM 5837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64527310 64527310 + Missense_Mutation SNP C C T rs145881639 byfrequency TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYGO1 26108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55838992 55838992 + Silent SNP A A G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYGO1 26108 broad.mit.edu;ucsc.edu 37 15 55841181 55841181 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PYROXD1 79912 broad.mit.edu 37 12 21623298 21623298 + 3'UTR SNP A T T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PYROXD1 79912 broad.mit.edu 37 12 21623298 21623298 + 3'UTR SNP A T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PYROXD1 79912 broad.mit.edu 37 12 21623298 21623298 + 3'UTR SNP A T T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx PYROXD1 79912 broad.mit.edu;hgsc.bcm.edu 37 12 21621622 21621622 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYROXD2 84795 hgsc.bcm.edu 37 10 100152266 100152266 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PYROXD2 84795 hgsc.bcm.edu;ucsc.edu 37 10 100174841 100174841 + Missense_Mutation SNP G G A rs117431460 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PYY 5697 hgsc.bcm.edu 37 17 42030387 42030387 + Intron SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PZP 5858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9305466 9305466 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9316306 9316306 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9321469 9321469 + Silent SNP A A G novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9322148 9322148 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9344841 9344841 + Silent SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 hgsc.bcm.edu 37 12 9305862 9305862 + Silent SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 hgsc.bcm.edu 37 12 9317897 9317897 + Silent SNP G G A rs139247183 unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq PZP 5858 hgsc.bcm.edu 37 12 9318749 9318749 + Silent SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID PZP 5858 hgsc.bcm.edu;ucsc.edu 37 12 9305470 9305471 + Frame_Shift_Ins INS - - GTTT novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QARS 5859 broad.mit.edu;hgsc.bcm.edu 37 3 49136701 49136701 + Intron SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QDPR 5860 broad.mit.edu 37 4 17488607 17488607 + 3'UTR SNP A G G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QDPR 5860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 17506031 17506031 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QKI 9444 broad.mit.edu 37 6 163836175 163836176 + 5'UTR INS - CGG CGG novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QKI 9444 broad.mit.edu 37 6 163985877 163985877 + Intron SNP T A A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QKI 9444 broad.mit.edu 37 6 163985878 163985878 + Intron SNP T A A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QKI 9444 hgsc.bcm.edu 37 6 163985686 163985686 + 3'UTR SNP C C T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QPRT 23475 broad.mit.edu;ucsc.edu 37 16 29706503 29706503 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QRFPR 84109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 122250674 122250674 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QRFPR 84109 hgsc.bcm.edu 37 4 122257945 122257945 + Intron SNP T T C rs143184159 by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID QRICH1 54870 hgsc.bcm.edu 37 3 49094428 49094437 + Frame_Shift_Del DEL ACAGCCTGCA ACAGCCTGCA - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 ACAGCCTGCA ACAGCCTGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QRICH1 54870 hgsc.bcm.edu 37 3 49095139 49095139 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID QRICH2 84074 broad.mit.edu 37 17 74270248 74270248 + 3'UTR SNP T C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QRICH2 84074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74276934 74276934 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QRICH2 84074 hgsc.bcm.edu 37 17 74288814 74288814 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID QRICH2 84074 hgsc.bcm.edu 37 17 74288892 74288892 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID QRSL1 55278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 107088233 107088233 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSER1 79832 broad.mit.edu 37 11 32996944 32996944 + Intron SNP C T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu 37 11 32996944 32996944 + Intron SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu 37 11 32998331 32998332 + 3'UTR INS - T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu 37 11 32998332 32998332 + 3'UTR DEL T - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu 37 11 32998372 32998372 + 3'UTR DEL T - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu 37 11 32998372 32998372 + 3'UTR DEL T - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu 37 11 33005748 33005748 + Frame_Shift_Del DEL C - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSER1 79832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32953488 32953488 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSER1 79832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32953804 32953804 + Silent SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSER1 79832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32955024 32955024 + Silent SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSER1 79832 hgsc.bcm.edu 37 11 32956639 32956639 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID QSER1 79832 hgsc.bcm.edu;ucsc.edu 37 11 32953537 32953537 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSER1 79832 hgsc.bcm.edu;ucsc.edu 37 11 32954712 32954712 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSOX1 5768 broad.mit.edu;hgsc.bcm.edu 37 1 180166433 180166433 + 3'UTR SNP C C A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSOX1 5768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180165532 180165532 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QSOX2 169714 broad.mit.edu 37 9 139100415 139100415 + 3'UTR DEL T - - rs111392257 unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx QSOX2 169714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139118696 139118696 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QTRT1 81890 hgsc.bcm.edu 37 19 10818183 10818183 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq QTRT1 81890 hgsc.bcm.edu;ucsc.edu 37 19 10818039 10818039 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq R3HCC1 203069 hgsc.bcm.edu;ucsc.edu 37 8 23147827 23147827 + Missense_Mutation SNP C C T rs150268828 by1000genomes TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID R3HDM1 23518 broad.mit.edu;hgsc.bcm.edu 37 2 136418887 136418887 + Silent SNP T T A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq R3HDM1 23518 broad.mit.edu;hgsc.bcm.edu 37 2 136418888 136418888 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq R3HDM1 23518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 136402959 136402959 + Silent SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq R3HDM1 23518 hgsc.bcm.edu 37 2 136409444 136409444 + Missense_Mutation SNP C C T rs112729561 unknown;alternate_allele TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID R3HDM2 22864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57648628 57648628 + Silent SNP C C G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq R3HDML 140902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 42965937 42965937 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq R3HDML 140902 hgsc.bcm.edu;ucsc.edu 37 20 42969922 42969922 + Silent SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB10 10890 hgsc.bcm.edu;ucsc.edu 37 2 26332677 26332677 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB11FIP1 80223 broad.mit.edu 37 8 37727720 37727720 + Intron DEL A - - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB11FIP1 80223 broad.mit.edu 37 8 37727720 37727720 + Intron DEL A - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB11FIP1 80223 broad.mit.edu 37 8 37727720 37727720 + Intron DEL A - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB11FIP1 80223 broad.mit.edu;hgsc.bcm.edu 37 8 37756812 37756812 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB11FIP2 22841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 119805451 119805451 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB11FIP2 22841 hgsc.bcm.edu;ucsc.edu 37 10 119798634 119798634 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB11FIP3 9727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 476674 476674 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB11FIP3 9727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 532561 532561 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB11FIP3 9727 hgsc.bcm.edu;ucsc.edu 37 16 546818 546826 + Frame_Shift_Del DEL GCACAGTCC GCACAGTCC - novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 GCACAGTCC GCACAGTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB11FIP4 84440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29857420 29857420 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB11FIP5 26056 broad.mit.edu 37 2 73315745 73315745 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB18 22931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27822869 27822869 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB1A 5861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65316108 65316108 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB20 55647 broad.mit.edu 37 13 111175974 111175974 + 3'UTR SNP C T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB21 23011 hgsc.bcm.edu;ucsc.edu 37 12 72164429 72164431 + In_Frame_Del DEL AAT AAT - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 AAT AAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB22A 57403 broad.mit.edu 37 20 56886167 56886167 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB23 51715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 57075110 57075110 + Silent SNP T T A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB24 53917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176728925 176728925 + Splice_Site SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB24 53917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176728945 176728945 + Silent SNP A A G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB24 53917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176729440 176729440 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB24 53917 hgsc.bcm.edu;ucsc.edu 37 5 176729429 176729429 + Silent SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB26 25837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2200042 2200042 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB2A 5862 hgsc.bcm.edu 37 8 61471447 61471447 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB2B 84932 broad.mit.edu;hgsc.bcm.edu 37 14 21944786 21944786 + RNA SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB32 10981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146865253 146865253 + Silent SNP C C T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB32 10981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146875689 146875689 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB33A 9363 broad.mit.edu;hgsc.bcm.edu 37 X 129306194 129306194 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB33A 9363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129306270 129306270 + Silent SNP G G T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB33B 83452 broad.mit.edu 37 4 140394375 140394375 + 3'UTR SNP G A A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB34 83871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27041908 27041908 + Silent SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB36 9609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 23501360 23501360 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB37 326624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72739479 72739479 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB37 326624 hgsc.bcm.edu 37 17 72667711 72667711 + Intron SNP A A C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB37 326624 hgsc.bcm.edu 37 17 72739261 72739261 + Splice_Region SNP T T A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB39 0 broad.mit.edu 37 11 107833105 107833105 + 3'UTR SNP A C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB39B 116442 broad.mit.edu 37 X 154490260 154490260 + Missense_Mutation SNP G C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB39B 116442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154490261 154490261 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3A 5864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18309636 18309636 + Nonsense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3B 5865 hgsc.bcm.edu;ucsc.edu 37 1 52385647 52385647 + Silent SNP C C T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB3C 115827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 57913493 57913493 + Silent SNP G G A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3D 9545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11436252 11436252 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3GAP1 22930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135926185 135926185 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3GAP1 22930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135926271 135926271 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3GAP2 25782 broad.mit.edu 37 1 220323058 220323058 + 3'UTR DEL C - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB3GAP2 25782 broad.mit.edu 37 1 220324917 220324917 + Intron SNP C A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB3GAP2 25782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220346067 220346067 + Silent SNP A A G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3GAP2 25782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220445640 220445640 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB3IL1 5866 broad.mit.edu 37 11 61665702 61665702 + 3'UTR SNP T G G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB40B 10966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80622419 80622419 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB40C 57799 hgsc.bcm.edu 37 16 675459 675459 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB43 339122 broad.mit.edu;hgsc.bcm.edu 37 3 128813982 128813982 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB43 339122 broad.mit.edu;hgsc.bcm.edu 37 3 128813995 128813995 + Silent SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB4B 53916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41286335 41286335 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB4B 53916 broad.mit.edu;ucsc.edu 37 19 41286350 41286350 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB5A 5868 hgsc.bcm.edu;ucsc.edu 37 3 20017171 20017171 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB5B 5869 hgsc.bcm.edu 37 12 56385916 56385918 + In_Frame_Del DEL GGA GGA - novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAB6B 51560 broad.mit.edu;ucsc.edu 37 3 133558406 133558406 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB7A 7879 broad.mit.edu 37 3 128532447 128532448 + 3'UTR DEL CA - - rs139417205 by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAB7A 7879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128516883 128516883 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB8B 51762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63547744 63547744 + Silent SNP C C G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAB8B 51762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63555808 63555808 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABAC1 10567 broad.mit.edu;ucsc.edu 37 19 42462491 42462491 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RABEP1 9135 broad.mit.edu 37 17 5265015 5265015 + Intron SNP A T T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RABEP1 9135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5264813 5264813 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABEP1 9135 hgsc.bcm.edu 37 17 5268432 5268432 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABEP2 79874 broad.mit.edu 37 16 28916205 28916205 + 3'UTR SNP T C C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RABEP2 79874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28916276 28916276 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABEP2 79874 hgsc.bcm.edu 37 16 28922429 28922429 + Silent SNP C C T novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RABGAP1 23637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125760994 125760994 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGAP1 23637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125782628 125782628 + Silent SNP T T C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGAP1 23637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125865394 125865394 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGAP1 23637 hgsc.bcm.edu;ucsc.edu 37 9 125777884 125777884 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RABGAP1L 9910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 174245014 174245014 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGAP1L 9910 hgsc.bcm.edu;ucsc.edu 37 1 174781011 174781011 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGEF1 27342 broad.mit.edu;hgsc.bcm.edu 37 7 66248812 66248812 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGEF1 27342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 66260561 66260561 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGGTA 5875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24737807 24737807 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGGTA 5875 hgsc.bcm.edu;ucsc.edu 37 14 24740082 24740084 + In_Frame_Del DEL CAG CAG - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGGTB 5876 broad.mit.edu 37 1 76255936 76255936 + Intron SNP G T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RABGGTB 5876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76254935 76254935 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABGGTB 5876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76255648 76255648 + Silent SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABL3 285282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 120461341 120461341 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RABL3 285282 hgsc.bcm.edu 37 3 120428688 120428688 + Silent SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RABL5 64792 hgsc.bcm.edu 37 7 100959746 100959746 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAC1 5879 broad.mit.edu 37 7 6442071 6442071 + Silent SNP G C C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAC1 5879 broad.mit.edu 37 7 6442157 6442157 + 3'UTR DEL A - - novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAC1 5879 hgsc.bcm.edu;ucsc.edu 37 7 6431566 6431566 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAC2 5880 broad.mit.edu 37 22 37640153 37640153 + Intron SNP C T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAC3 5881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79990881 79990881 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RACGAP1 29127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50384068 50384068 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RACGAP1P 83956 broad.mit.edu 37 12 45458035 45458035 + RNA SNP C A A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAD17 5884 hgsc.bcm.edu;ucsc.edu 37 5 68682089 68682090 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD21 5885 broad.mit.edu 37 8 117858606 117858607 + 3'UTR INS - AT AT rs16918570 bycluster;byfrequency;by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAD21L1 642636 hgsc.bcm.edu 37 20 1212254 1212254 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD23A 5886 hgsc.bcm.edu;ucsc.edu 37 19 13058667 13058667 + Silent SNP G G A novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD23B 5887 hgsc.bcm.edu 37 9 110084347 110084348 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD50 10111 broad.mit.edu;hgsc.bcm.edu 37 5 131977874 131977874 + Missense_Mutation SNP A A C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD50 10111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131894990 131894990 + Silent SNP T T C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD50 10111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131930637 131930637 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD50 10111 hgsc.bcm.edu 37 5 131927632 131927632 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD50 10111 hgsc.bcm.edu;ucsc.edu 37 5 131940610 131940610 + Silent SNP T T C novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD50 10111 hgsc.bcm.edu;ucsc.edu 37 5 131973813 131973813 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD51 5888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40993342 40993342 + Silent SNP A A T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51 5888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41011016 41011016 + Missense_Mutation SNP G G A rs121917739 bycluster;byfrequency;by1000genomes TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51 5888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41022091 41022091 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP1 10635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4668106 4668106 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP1 10635 hgsc.bcm.edu;ucsc.edu 37 12 4655496 4655496 + Silent SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD51AP2 729475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 17696802 17696802 + Missense_Mutation SNP C C G rs140673266 by1000genomes;alternate_allele TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP2 729475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 17697415 17697415 + Silent SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP2 729475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 17698328 17698328 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP2 729475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 17699551 17699551 + Silent SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP2 729475 hgsc.bcm.edu;ucsc.edu 37 2 17697759 17697759 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD51AP2 729475 hgsc.bcm.edu;ucsc.edu 37 2 17698114 17698114 + Silent SNP A A G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAD51L1 0 broad.mit.edu 37 14 68964203 68964203 + Intron DEL T - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAD52 5893 broad.mit.edu 37 12 1025464 1025464 + Intron SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAD52 5893 hgsc.bcm.edu;ucsc.edu 37 12 1034639 1034639 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD52 5893 hgsc.bcm.edu;ucsc.edu 37 12 1042154 1042154 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD54L2 23132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51667705 51667705 + Nonsense_Mutation SNP T T A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD54L 8438 broad.mit.edu;hgsc.bcm.edu 37 1 46743873 46743873 + Silent SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD54L 8438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46714224 46714224 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD54L 8438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46726269 46726269 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAD9B 144715 broad.mit.edu 37 12 110969525 110969525 + 3'UTR SNP A G G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RADIL 55698 broad.mit.edu 37 7 4838975 4838975 + 3'UTR SNP G C C rs149757850 by1000genomes TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RADIL 55698 hgsc.bcm.edu 37 7 4843307 4843307 + Missense_Mutation SNP T T C rs187128776 by1000genomes TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RADIL 55698 hgsc.bcm.edu;ucsc.edu 37 7 4839090 4839090 + Silent SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAET1E 135250 broad.mit.edu 37 6 150211277 150211277 + Silent SNP A G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAET1E 135250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150210680 150210680 + Silent SNP G G A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAET1G 353091 broad.mit.edu;hgsc.bcm.edu 37 6 150240312 150240312 + Missense_Mutation SNP T T A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAET1G 353091 hgsc.bcm.edu 37 6 150240945 150240945 + Silent SNP G G A rs189388116 by1000genomes TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAET1L 154064 hgsc.bcm.edu 37 6 150343148 150343148 + Missense_Mutation SNP A A C rs78563624 unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAG1AP1 0 broad.mit.edu 37 1 155110965 155110965 + 3'UTR DEL T - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAG2 5897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 36614945 36614945 + Silent SNP G G A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAG2 5897 hgsc.bcm.edu 37 11 36614395 36614396 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAGE 0 hgsc.bcm.edu;ucsc.edu 37 14 102698939 102698939 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAGE 0 hgsc.bcm.edu;ucsc.edu 37 14 102699021 102699021 + Missense_Mutation SNP A A C rs144699014 unknown;alternate_allele TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAGE 0 hgsc.bcm.edu;ucsc.edu 37 14 102729952 102729952 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAI1 10743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17696713 17696713 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAI1 10743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17699836 17699836 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAI1 10743 hgsc.bcm.edu 37 17 17700038 17700040 + In_Frame_Del DEL AGG AGG - rs149716029 by1000genomes TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 AGG AGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAI14 26064 broad.mit.edu 37 5 34688211 34688216 + Intron DEL GACAAA - - rs142375133 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 GACAAA GACAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAI14 26064 broad.mit.edu 37 5 34688211 34688216 + Intron DEL GACAAA - - rs142375133 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 GACAAA GACAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAI14 26064 broad.mit.edu 37 5 34830951 34830951 + 3'UTR SNP T C C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAI14 26064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 34757614 34757614 + Silent SNP C C G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAI14 26064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 34823798 34823798 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAI14 26064 hgsc.bcm.edu;ucsc.edu 37 5 34824236 34824236 + Silent SNP G G C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAI2 10742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17819213 17819213 + Silent SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAI2 10742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17819773 17819773 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALB 5899 hgsc.bcm.edu 37 2 121036308 121036308 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALBP1 10928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 9516929 9516929 + Frame_Shift_Del DEL G G - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36096963 36096963 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36104763 36104763 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36125081 36125081 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36133906 36133906 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36143766 36143766 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 hgsc.bcm.edu 37 14 36096435 36096436 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 hgsc.bcm.edu 37 14 36121096 36121096 + Intron SNP A A T rs78676330 unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 hgsc.bcm.edu 37 14 36140604 36140611 + Frame_Shift_Del DEL AGCTGAAG AGCTGAAG - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 AGCTGAAG AGCTGAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 hgsc.bcm.edu 37 14 36140605 36140611 + Frame_Shift_Del DEL GCTGAAG GCTGAAG - novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 GCTGAAG GCTGAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA1 253959 broad.mit.edu 37 14 36008785 36008785 + 3'UTR SNP T C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RALGAPA1 253959 hgsc.bcm.edu 37 14 36123570 36123570 + Splice_Region SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGAPA2 57186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 20493446 20493446 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPA2 57186 hgsc.bcm.edu;ucsc.edu 37 20 20486076 20486076 + Silent SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGAPB 57148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37150191 37150191 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALGAPB 57148 hgsc.bcm.edu;ucsc.edu 37 20 37146211 37146211 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGAPB 57148 hgsc.bcm.edu;ucsc.edu 37 20 37150282 37150282 + Silent SNP G G A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGDS 5900 broad.mit.edu 37 9 135974871 135974872 + Intron INS - A A rs35575588 bycluster;by1000genomes TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RALGDS 5900 hgsc.bcm.edu 37 9 135985694 135985694 + Silent SNP C C A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGDS 5900 hgsc.bcm.edu 37 9 135985694 135985694 + Silent SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGPS1 9649 hgsc.bcm.edu 37 9 129974994 129974994 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RALGPS2 55103 broad.mit.edu 37 1 178753614 178753614 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RALGPS2 55103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 178852665 178852665 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALY 22913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 32663747 32663747 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RALYL 138046 broad.mit.edu 37 8 85095902 85095902 + Intron DEL T - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RALYL 138046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 85774642 85774642 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAMP1 10267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238820196 238820196 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAMP2 10266 broad.mit.edu 37 17 40915045 40915045 + 3'UTR DEL T - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAMP3 10268 hgsc.bcm.edu 37 7 45222989 45222989 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAN 5901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 131357432 131357432 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP10 57610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67778202 67778202 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP10 57610 hgsc.bcm.edu 37 16 67763369 67763369 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP17 64901 broad.mit.edu;hgsc.bcm.edu 37 5 170336745 170336745 + Silent SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP17 64901 broad.mit.edu;hgsc.bcm.edu 37 5 170725878 170725878 + 3'UTR SNP C C G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP17 64901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 170380686 170380686 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP17 64901 hgsc.bcm.edu;ucsc.edu 37 5 170305135 170305135 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP2 5903 broad.mit.edu 37 2 109382975 109382975 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANBP2 5903 broad.mit.edu 37 2 109383602 109383602 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANBP2 5903 broad.mit.edu 37 2 109383603 109383603 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANBP2 5903 broad.mit.edu 37 2 109383605 109383605 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANBP2 5903 broad.mit.edu;hgsc.bcm.edu 37 2 109365421 109365421 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 broad.mit.edu;hgsc.bcm.edu 37 2 109384143 109384143 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 broad.mit.edu;hgsc.bcm.edu 37 2 109384150 109384150 + Silent SNP A A G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109357073 109357073 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109379866 109379866 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109379898 109379898 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109381095 109381095 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP2 5903 hgsc.bcm.edu;ucsc.edu 37 2 109381107 109381107 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP3 8498 hgsc.bcm.edu 37 19 5923257 5923257 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP3 8498 hgsc.bcm.edu 37 19 5923257 5923257 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP3 8498 hgsc.bcm.edu 37 19 5933477 5933477 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP3L 202151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36255599 36255599 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP3L 202151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36257042 36257042 + Splice_Site SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP3L 202151 hgsc.bcm.edu;ucsc.edu 37 5 36301485 36301485 + Silent SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANBP6 26953 broad.mit.edu;hgsc.bcm.edu 37 9 6013478 6013478 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP6 26953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 6013437 6013437 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP6 26953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 6014375 6014375 + Silent SNP G G A rs146563217 unknown;alternate_allele TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANBP6 26953 hgsc.bcm.edu;ucsc.edu 37 9 6014830 6014830 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RANGAP1 5905 broad.mit.edu 37 22 41652800 41652800 + Missense_Mutation SNP A C C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANGAP1 5905 broad.mit.edu 37 22 41677122 41677122 + 5'UTR SNP C A A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANGAP1 5905 broad.mit.edu 37 22 41677171 41677171 + 5'UTR SNP A T T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RANGAP1 5905 hgsc.bcm.edu;ucsc.edu 37 22 41664130 41664130 + Silent SNP T T G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RANGRF 29098 hgsc.bcm.edu 37 17 8193196 8193196 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAP1A 5906 hgsc.bcm.edu;ucsc.edu 37 1 112247019 112247019 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAP1GAP2 23108 hgsc.bcm.edu;ucsc.edu 37 17 2703860 2703860 + Intron SNP C C T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAP1GAP 5909 broad.mit.edu 37 1 21924516 21924516 + Frame_Shift_Del DEL C - - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAP1GDS1 5910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99355174 99355174 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAP1GDS1 5910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99355175 99355175 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAP2B 5912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 152880567 152880567 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAP2B 5912 hgsc.bcm.edu;ucsc.edu 37 3 152880655 152880664 + Frame_Shift_Del DEL CGGCGGGCAC CGGCGGGCAC - novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 CGGCGGGCAC CGGCGGGCAC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF1 2889 broad.mit.edu 37 9 134612882 134612882 + Translation_Start_Site SNP C T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF1 2889 hgsc.bcm.edu 37 9 134464199 134464199 + Silent SNP C C A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF1 2889 hgsc.bcm.edu;ucsc.edu 37 9 134514117 134514117 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF2 9693 broad.mit.edu 37 4 160275198 160275198 + Frame_Shift_Del DEL G - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160189294 160189294 + 5'UTR SNP T T C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160260314 160260314 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160264133 160264133 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160273849 160273849 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160273880 160273880 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160275160 160275160 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160279330 160279330 + 3'UTR SNP A A G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF3 10411 broad.mit.edu 37 12 48134634 48134634 + Intron SNP C T T rs11168219 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF3 10411 broad.mit.edu 37 12 48151827 48151830 + 5'UTR DEL CCCA - - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 CCCA CCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF3 10411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48143587 48143587 + Silent SNP C C T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF3 10411 broad.mit.edu;ucsc.edu 37 12 48137448 48137448 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF3 10411 hgsc.bcm.edu 37 12 48143214 48143214 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF4 11069 broad.mit.edu 37 2 173679206 173679206 + Intron SNP G C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF4 11069 broad.mit.edu 37 2 173679337 173679337 + Intron DEL T - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF4 11069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173879257 173879257 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF4 11069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173894949 173894949 + Silent SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF4 11069 hgsc.bcm.edu;ucsc.edu 37 2 173900848 173900848 + Splice_Region SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF5 9771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 22165225 22165225 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF6 51735 broad.mit.edu 37 5 130799538 130799538 + Intron SNP A C C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF6 51735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 130764648 130764648 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF6 51735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 130841087 130841087 + Silent SNP T T G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF6 51735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 130897689 130897689 + Silent SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPGEF6 51735 broad.mit.edu;ucsc.edu 37 5 130825242 130825242 + Missense_Mutation SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RAPGEF6 51735 hgsc.bcm.edu 37 5 130815212 130815212 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF6 51735 hgsc.bcm.edu 37 5 130928142 130928142 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEF6 51735 hgsc.bcm.edu;ucsc.edu 37 5 130788816 130788816 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RAPGEFL1 51195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38340547 38340547 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPH1 65059 broad.mit.edu;hgsc.bcm.edu 37 2 204356027 204356027 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPH1 65059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 204305222 204305222 + Silent SNP T T A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAPSN 5913 broad.mit.edu 37 11 47470672 47470672 + 5'UTR SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RARA 5914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38506145 38506145 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARA 5914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38508302 38508302 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARA 5914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38508596 38508596 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARA 5914 broad.mit.edu;ucsc.edu 37 17 38508320 38508320 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RARA 5914 hgsc.bcm.edu 37 17 38510748 38510748 + Silent SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARA 5914 hgsc.bcm.edu;ucsc.edu 37 17 38468884 38468884 + Intron SNP G G T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARA 5914 hgsc.bcm.edu;ucsc.edu 37 17 38502831 38502831 + Intron SNP A A G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARB 5915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 25636158 25636158 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARB 5915 hgsc.bcm.edu;ucsc.edu 37 3 25470335 25470335 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RARG 5916 broad.mit.edu 37 12 53626026 53626026 + 5'UTR DEL C - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RARRES1 5918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 158415529 158415529 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RARRES2 5919 hgsc.bcm.edu 37 7 150037576 150037576 + Silent SNP C C A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RARRES2 5919 hgsc.bcm.edu 37 7 150037577 150037577 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RARS 5917 broad.mit.edu 37 5 167927655 167927655 + Silent SNP A T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASA1 5921 broad.mit.edu 37 5 86564517 86564517 + Silent SNP A G G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASA1 5921 broad.mit.edu;hgsc.bcm.edu 37 5 86564707 86564707 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASA1 5921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 86674302 86674302 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASA1 5921 hgsc.bcm.edu;ucsc.edu 37 5 86627234 86627238 + Frame_Shift_Del DEL TTATC TTATC - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 TTATC TTATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASA2 5922 broad.mit.edu 37 3 141295907 141295907 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASA2 5922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141278763 141278763 + Silent SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASA3 22821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114782719 114782719 + Silent SNP G G T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASA4P 0 broad.mit.edu 37 7 44073273 44073274 + Intron INS - C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASAL1 8437 broad.mit.edu 37 12 113565939 113565939 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASAL3 64926 broad.mit.edu;hgsc.bcm.edu 37 19 15562948 15562948 + Intron SNP G G T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASAL3 64926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15565475 15565475 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASAL3 64926 hgsc.bcm.edu;ucsc.edu 37 19 15565261 15565261 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGEF1A 221002 broad.mit.edu 37 10 43690529 43690530 + 3'UTR INS - AG AG rs10644740 bycluster;by1000genomes TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1A 221002 broad.mit.edu 37 10 43691513 43691513 + 3'UTR DEL A - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1B 153020 broad.mit.edu 37 4 82377759 82377759 + Intron SNP C A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1B 153020 broad.mit.edu 37 4 82377759 82377759 + Intron SNP C A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1B 153020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 82355851 82355851 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGEF1B 153020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 82380577 82380577 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGEF1B 153020 hgsc.bcm.edu 37 4 82366985 82366985 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGEF1B 153020 hgsc.bcm.edu;ucsc.edu 37 4 82369285 82369285 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGEF1C 255426 broad.mit.edu 37 5 179528352 179528352 + 3'UTR DEL G - - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1C 255426 broad.mit.edu 37 5 179528352 179528352 + 3'UTR DEL G - - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1C 255426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179538533 179538533 + Silent SNP T T C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGEF1C 255426 broad.mit.edu;ucsc.edu 37 5 179546418 179546418 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGEF1C 255426 hgsc.bcm.edu 37 5 179555487 179555487 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGEF1C 255426 hgsc.bcm.edu 37 5 179555487 179555487 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGRF1 5923 broad.mit.edu 37 15 79252704 79252706 + 3'UTR DEL GGC - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGRF1 5923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79264229 79264229 + Silent SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRF1 5923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79356851 79356851 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRF1 5923 hgsc.bcm.edu;ucsc.edu 37 15 79317727 79317727 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGRF1 5923 hgsc.bcm.edu;ucsc.edu 37 15 79356835 79356835 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGRF2 5924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80508333 80508333 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRF2 5924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80511696 80511696 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RASGRP2 10235 broad.mit.edu 37 11 64508224 64508224 + Intron SNP G C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASGRP2 10235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64503123 64503123 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRP2 10235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64507132 64507132 + Missense_Mutation SNP G G C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRP3 25780 hgsc.bcm.edu;ucsc.edu 37 2 33747059 33747059 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRP4 115727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38904046 38904046 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASGRP4 115727 hgsc.bcm.edu 37 19 38907761 38907761 + Silent SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASGRP4 115727 hgsc.bcm.edu;ucsc.edu 37 19 38904103 38904103 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASIP1 54922 hgsc.bcm.edu 37 19 49224073 49224073 + Silent SNP G G C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASL10A 10633 broad.mit.edu 37 22 29709663 29709664 + Intron INS - C C rs35435520 bycluster;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASSF1 11186 broad.mit.edu 37 3 50375606 50375607 + Intron INS - C C rs3840490 bycluster;by1000genomes TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASSF2 9770 broad.mit.edu 37 20 4764849 4764849 + 3'UTR SNP G T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASSF2 9770 broad.mit.edu 37 20 4771138 4771138 + Missense_Mutation SNP G A A rs147789166 bycluster;by1000genomes TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASSF2 9770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4776560 4776560 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASSF3 283349 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 65085342 65085342 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASSF6 166824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 74442420 74442420 + Silent SNP A A T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASSF6 166824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 74459276 74459276 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASSF7 8045 hgsc.bcm.edu 37 11 563219 563219 + Nonsense_Mutation SNP C C T rs139977222 unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RASSF9 9182 broad.mit.edu 37 12 86230146 86230146 + 5'UTR SNP G C C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RASSF9 9182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 86199447 86199447 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RASSF9 9182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 86199472 86199472 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RAVER2 55225 broad.mit.edu;hgsc.bcm.edu 37 1 65296679 65296679 + 3'UTR SNP C C G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RB1 5925 broad.mit.edu;hgsc.bcm.edu 37 13 49030485 49030485 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RB1CC1 9821 broad.mit.edu 37 8 53536112 53536112 + 3'UTR SNP T A A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RB1CC1 9821 broad.mit.edu 37 8 53536113 53536113 + 3'UTR DEL A - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RB1CC1 9821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 53554925 53554925 + Silent SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RB1CC1 9821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 53586507 53586507 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBAK 57786 broad.mit.edu 37 7 5085848 5085848 + Intron SNP G C C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBAK 57786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5104366 5104366 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBAK 57786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5105059 5105059 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP4 5928 broad.mit.edu;hgsc.bcm.edu 37 1 33147502 33147502 + 3'UTR SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP5 5929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205069187 205069187 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP5 5929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205084987 205084987 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP5 5929 hgsc.bcm.edu;ucsc.edu 37 1 205084072 205084072 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBBP6 5930 broad.mit.edu 37 16 24583810 24583810 + 3'UTR SNP A C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBBP6 5930 broad.mit.edu;hgsc.bcm.edu 37 16 24564874 24564874 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP6 5930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24583192 24583192 + Missense_Mutation SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP6 5930 hgsc.bcm.edu 37 16 24583718 24583718 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBBP6 5930 hgsc.bcm.edu;ucsc.edu 37 16 24551961 24551962 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBBP6 5930 hgsc.bcm.edu;ucsc.edu 37 16 24573318 24573318 + Silent SNP T T G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBBP6 5930 hgsc.bcm.edu;ucsc.edu 37 16 24580912 24580912 + Silent SNP A A G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBBP6 5930 hgsc.bcm.edu;ucsc.edu 37 16 24581248 24581248 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBBP6 5930 hgsc.bcm.edu;ucsc.edu 37 16 24581249 24581249 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBBP9 10741 broad.mit.edu 37 20 18468690 18468690 + 3'UTR DEL T - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBBP9 10741 hgsc.bcm.edu 37 20 18477770 18477770 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBCK1 10616 broad.mit.edu;hgsc.bcm.edu 37 20 402784 402784 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBCK1 10616 hgsc.bcm.edu 37 20 409176 409176 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBCK1 10616 hgsc.bcm.edu 37 20 411016 411017 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBFA 79863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 77797401 77797401 + Silent SNP G G A rs142434986 unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBFOX1 54715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 7568250 7568250 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBFOX1 54715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 7568337 7568337 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBFOX1 54715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 7645620 7645620 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBFOX1 54715 hgsc.bcm.edu 37 16 7102037 7102037 + Intron SNP T T C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBL2 5934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53487478 53487478 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBL2 5934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53495738 53495738 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM10 8241 hgsc.bcm.edu 37 X 47039844 47039844 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM11 54033 broad.mit.edu;hgsc.bcm.edu 37 21 15599655 15599655 + 3'UTR SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM11 54033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15592035 15592035 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM11 54033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 15599585 15599585 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM12 10137 broad.mit.edu 37 20 34240342 34240342 + 3'UTR DEL T - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM12 10137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34242653 34242653 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM12B 389677 broad.mit.edu 37 8 94744278 94744278 + 3'UTR DEL A - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM12B 389677 broad.mit.edu 37 8 94744338 94744338 + 3'UTR DEL C - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM12B 389677 broad.mit.edu 37 8 94745437 94745438 + 3'UTR INS - A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM12B 389677 broad.mit.edu 37 8 94745438 94745438 + 3'UTR DEL A - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM12B 389677 broad.mit.edu 37 8 94745438 94745438 + 3'UTR DEL A - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM12B 389677 broad.mit.edu;hgsc.bcm.edu 37 8 94746348 94746348 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM12B 389677 hgsc.bcm.edu 37 8 94746443 94746443 + Silent SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM14 10432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66391778 66391778 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM14 10432 hgsc.bcm.edu 37 11 66392256 66392256 + Silent SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM14 10432 hgsc.bcm.edu 37 11 66392311 66392312 + Frame_Shift_Del DEL GC GC - novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM14 10432 hgsc.bcm.edu 37 11 66392880 66392880 + Silent SNP C C T rs11550057 bycluster;byfrequency;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM15 64783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110883213 110883213 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM15 64783 hgsc.bcm.edu 37 1 110882645 110882645 + Silent SNP T T C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM15 64783 hgsc.bcm.edu 37 1 110883662 110883662 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM15 64783 hgsc.bcm.edu 37 1 110883715 110883715 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM15 64783 hgsc.bcm.edu;ucsc.edu 37 1 110888165 110888165 + Silent SNP T T C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM15B 29890 broad.mit.edu 37 3 51431680 51431680 + 3'UTR DEL T - - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM16 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155123148 155123148 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM16 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155153658 155153658 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM16 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155154022 155154022 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM16 0 hgsc.bcm.edu 37 6 155124697 155124697 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM16 0 hgsc.bcm.edu 37 6 155145481 155145481 + Silent SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM16 0 hgsc.bcm.edu 37 6 155153505 155153505 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM17 84991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6143320 6143320 + Silent SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM17 84991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6147033 6147033 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM19 9904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 114364985 114364985 + Silent SNP T T C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM19 9904 hgsc.bcm.edu 37 12 114397159 114397159 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM19 9904 hgsc.bcm.edu;ucsc.edu 37 12 114364876 114364877 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM19 9904 hgsc.bcm.edu;ucsc.edu 37 12 114380203 114380203 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM20 282996 broad.mit.edu;hgsc.bcm.edu 37 10 112540834 112540834 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM20 282996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112572492 112572492 + Silent SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM20 282996 hgsc.bcm.edu;ucsc.edu 37 10 112540633 112540633 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM20 282996 hgsc.bcm.edu;ucsc.edu 37 10 112540644 112540644 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM20 282996 hgsc.bcm.edu;ucsc.edu 37 10 112579880 112579880 + Silent SNP C C T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM22 55696 hgsc.bcm.edu;ucsc.edu 37 5 150080549 150080549 + 5'UTR SNP T T A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM23 55147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23371499 23371499 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM23 55147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23378782 23378782 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM23 55147 hgsc.bcm.edu 37 14 23371265 23371265 + Silent SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM23 55147 hgsc.bcm.edu 37 14 23371268 23371268 + Silent SNP A A G rs56708790 bycluster;byfrequency;by1000genomes TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM23 55147 hgsc.bcm.edu 37 14 23371268 23371268 + Silent SNP A A G rs56708790 bycluster;byfrequency;by1000genomes TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM24 221662 hgsc.bcm.edu 37 6 17292140 17292140 + Silent SNP C C T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM25 58517 broad.mit.edu 37 14 73570019 73570019 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM25 58517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73550237 73550237 + Silent SNP A A G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM25 58517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73570036 73570036 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM26 64062 broad.mit.edu 37 13 79894530 79894533 + 3'UTR DEL TTTC - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 TTTC TTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM26 64062 broad.mit.edu 37 13 79928637 79928637 + Silent SNP A C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM26 64062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 79911406 79911406 + Missense_Mutation SNP C C G rs140188767 unknown;alternate_allele TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM26 64062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 79940847 79940847 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM26 64062 hgsc.bcm.edu 37 13 79894892 79894892 + Intron SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM27 54439 broad.mit.edu 37 5 145668696 145668696 + 3'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM27 54439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145610355 145610355 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM27 54439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145610357 145610357 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM27 54439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145643071 145643071 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM28 55131 broad.mit.edu;hgsc.bcm.edu 37 7 127979814 127979814 + Silent SNP G G A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM28 55131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127950874 127950874 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM28 55131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127961369 127961369 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM28 55131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127965927 127965927 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM28 55131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127975595 127975595 + Splice_Site SNP A A C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM33 155435 broad.mit.edu 37 7 155465597 155465597 + Silent SNP A T T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155473566 155473567 + Frame_Shift_Del DEL AG - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155493869 155493870 + Intron INS - A A rs113324488 bycluster;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155493869 155493870 + Intron INS - A A rs113324488 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155493869 155493870 + Intron INS - A A rs113324488 bycluster;by1000genomes TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155559381 155559381 + Intron SNP G A A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155571021 155571021 + 3'UTR DEL T - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu 37 7 155573476 155573477 + 3'UTR INS - CTCCATCACCT CTCCATCACCT novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM33 155435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 155473515 155473515 + Silent SNP A A T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM33 155435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 155537939 155537939 + Silent SNP T T G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM34 23029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235295228 235295228 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM34 23029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235318310 235318311 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM34 23029 hgsc.bcm.edu 37 1 235324285 235324285 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM38 55544 hgsc.bcm.edu 37 20 55968368 55968368 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM39 9584 broad.mit.edu;hgsc.bcm.edu 37 20 34292611 34292611 + Silent SNP A A G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM39 9584 broad.mit.edu;hgsc.bcm.edu 37 20 34322841 34322841 + Intron SNP T T C novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM39 9584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34312531 34312531 + Silent SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM39 9584 broad.mit.edu;ucsc.edu 37 20 34319917 34319917 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM39 9584 hgsc.bcm.edu 37 20 34292616 34292616 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM39 9584 hgsc.bcm.edu 37 20 34320047 34320047 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM39 9584 hgsc.bcm.edu;ucsc.edu 37 20 34309720 34309720 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM42 79171 broad.mit.edu 37 19 36122478 36122479 + Intron DEL TT - - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM43 375287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152107578 152107581 + Frame_Shift_Del DEL TCTC TCTC - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 TCTC TCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM43 375287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152112099 152112099 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM44 375316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238733023 238733023 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM45 129831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178990777 178990777 + Silent SNP C C G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM45 129831 hgsc.bcm.edu 37 2 178977303 178977304 + Frame_Shift_Ins INS - - G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM4 5936 hgsc.bcm.edu 37 11 66407209 66407209 + Silent SNP G G T rs61747408 unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM46 166863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155719349 155719349 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM47 54502 broad.mit.edu 37 4 40426607 40426607 + 3'UTR DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM47 54502 broad.mit.edu 37 4 40440590 40440590 + Silent SNP G A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBM47 54502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 40428110 40428110 + Silent SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM47 54502 hgsc.bcm.edu 37 4 40434714 40434725 + In_Frame_Del DEL GCGGCTGCGGCC GCGGCTGCGGCC - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 GCGGCTGCGGCC GCGGCTGCGGCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM6 10180 hgsc.bcm.edu;ucsc.edu 37 3 50006037 50006037 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBM6 10180 hgsc.bcm.edu;ucsc.edu 37 3 50112706 50112706 + Silent SNP C C T rs148501050 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM7 10179 broad.mit.edu;hgsc.bcm.edu 37 11 114272549 114272549 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM8A 9939 broad.mit.edu;hgsc.bcm.edu 37 1 145507665 145507665 + 5'UTR SNP A A T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM8A 9939 broad.mit.edu;hgsc.bcm.edu 37 1 145509177 145509177 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBM8A 9939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145508564 145508564 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMS1 5937 broad.mit.edu 37 2 161129852 161129852 + 3'UTR DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBMS2 5939 broad.mit.edu 37 12 56915754 56915754 + 5'UTR SNP C A A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBMS3 27303 broad.mit.edu 37 3 30045605 30045605 + 3'UTR DEL A - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBMS3 27303 hgsc.bcm.edu 37 3 29529915 29529915 + Intron SNP C C T rs74442983 unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMX 27316 hgsc.bcm.edu 37 X 135956571 135956572 + Frame_Shift_Ins INS - - GG novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMX 27316 hgsc.bcm.edu 37 X 135956571 135956572 + Frame_Shift_Ins INS - - GG novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMX 27316 hgsc.bcm.edu 37 X 135957716 135957716 + Missense_Mutation SNP A A G rs142284545 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMX 27316 hgsc.bcm.edu 37 X 135961587 135961587 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMX 27316 hgsc.bcm.edu 37 X 135961597 135961597 + RNA SNP T T C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMXL1 494115 hgsc.bcm.edu 37 1 89448608 89448608 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMXL1 494115 hgsc.bcm.edu 37 1 89449509 89449509 + Frame_Shift_Del DEL T T - rs71308872 unknown;alternate_allele TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMXL1 494115 broad.mit.edu 37 1 89447509 89447509 + 3'UTR SNP A C C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBMXL2 27288 hgsc.bcm.edu 37 11 7110548 7110548 + Missense_Mutation SNP C C T rs11041170 bycluster;byfrequency;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBMXL3 139804 broad.mit.edu 37 X 114425790 114425790 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBMXL3 139804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 114424200 114424200 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBP4 5950 hgsc.bcm.edu 37 10 95353602 95353602 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBPJ 3516 broad.mit.edu 37 4 26322655 26322655 + Intron SNP C A A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBPJ 3516 broad.mit.edu 37 4 26432685 26432685 + 3'UTR SNP A C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBPJ 3516 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 26426100 26426100 + Silent SNP C C T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBPJ 3516 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 26430436 26430436 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBPJ 3516 broad.mit.edu;ucsc.edu 37 4 26432360 26432360 + Missense_Mutation SNP C G G rs1064382 unknown;alternate_allele TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBPJL 11317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 43938268 43938268 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBPMS 11030 broad.mit.edu;hgsc.bcm.edu 37 8 30402150 30402150 + Intron SNP T T C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBPMS 11030 broad.mit.edu;hgsc.bcm.edu 37 8 30402171 30402171 + Intron SNP C C G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RBPMS 11030 hgsc.bcm.edu 37 8 30332299 30332299 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBPMS 11030 hgsc.bcm.edu;ucsc.edu 37 8 30361883 30361883 + Silent SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RBX1 9978 broad.mit.edu 37 22 41368620 41368620 + 3'UTR SNP G T T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RC3H1 149041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173934019 173934019 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RC3H1 149041 hgsc.bcm.edu;ucsc.edu 37 1 173916561 173916561 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RC3H1 149041 hgsc.bcm.edu;ucsc.edu 37 1 173950062 173950074 + Frame_Shift_Del DEL GAGTCATGTTCTC GAGTCATGTTCTC - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 GAGTCATGTTCTC GAGTCATGTTCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RC3H2 54542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125639776 125639776 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RC3H2 54542 hgsc.bcm.edu 37 9 125621286 125621286 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCAN1 1827 broad.mit.edu 37 21 35890232 35890232 + 3'UTR SNP G A A rs62211555 bycluster;byfrequency;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCAN1 1827 broad.mit.edu;hgsc.bcm.edu 37 21 35893781 35893781 + Intron SNP C C G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCAN1 1827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 35893901 35893901 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCBTB2 1102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 49084795 49084795 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCBTB2 1102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 49086880 49086880 + Silent SNP T T C novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCC1 1104 broad.mit.edu;hgsc.bcm.edu 37 1 28862846 28862846 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCC1 1104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28858360 28858360 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCC2 55920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17739593 17739593 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCC2 55920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17747210 17747210 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCC2 55920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17748729 17748729 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCC2 55920 hgsc.bcm.edu 37 1 17743003 17743003 + Silent SNP T T A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCC2 55920 hgsc.bcm.edu 37 1 17743003 17743003 + Silent SNP T T A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCCD1 91433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91504264 91504264 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCHY1 25898 broad.mit.edu 37 4 76407500 76407500 + 3'UTR DEL A - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCHY1 25898 broad.mit.edu 37 4 76419490 76419490 + Intron SNP T C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCHY1 25898 broad.mit.edu 37 4 76419490 76419490 + Intron SNP T C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCHY1 25898 broad.mit.edu 37 4 76419490 76419490 + Intron SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCHY1 25898 broad.mit.edu 37 4 76419633 76419634 + Intron DEL AC - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCL1 10171 hgsc.bcm.edu;ucsc.edu 37 9 4849485 4849485 + Silent SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCN2 5955 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77241529 77241529 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCOR1 23186 broad.mit.edu 37 14 103193027 103193027 + 3'UTR SNP C T T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCOR2 283248 broad.mit.edu 37 11 63683945 63683945 + 5'UTR SNP C A A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCOR2 283248 broad.mit.edu;hgsc.bcm.edu 37 11 63679957 63679957 + Silent SNP C C T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCOR2 283248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63682222 63682222 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCOR2 283248 hgsc.bcm.edu 37 11 63681731 63681731 + Splice_Site SNP A A T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCOR3 55758 broad.mit.edu 37 1 211487169 211487169 + 3'UTR SNP C T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCOR3 55758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 211486237 211486237 + Silent SNP T T A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCOR3 55758 hgsc.bcm.edu 37 1 211444566 211444566 + Splice_Region SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCOR3 55758 hgsc.bcm.edu 37 1 211447566 211447566 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCOR3 55758 hgsc.bcm.edu;ucsc.edu 37 1 211451524 211451524 + Silent SNP G G A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCSD1 92241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 167663406 167663406 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RCSD1 92241 hgsc.bcm.edu 37 1 167663408 167663408 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RCVRN 5957 broad.mit.edu 37 17 9801384 9801384 + 3'UTR SNP T G G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCVRN 5957 broad.mit.edu 37 17 9801384 9801384 + 3'UTR SNP T G G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCVRN 5957 broad.mit.edu 37 17 9801384 9801384 + 3'UTR SNP T G G novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCVRN 5957 broad.mit.edu 37 17 9804495 9804495 + Intron SNP C T T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RCVRN 5957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 9808162 9808162 + Silent SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDBP 7936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31922556 31922556 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDH11 51109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68151823 68151823 + Missense_Mutation SNP A A G rs182091562 by1000genomes TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDH11 51109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68151872 68151872 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDH11 51109 hgsc.bcm.edu;ucsc.edu 37 14 68145133 68145133 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RDH16 8608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57345981 57345981 + Silent SNP C C T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDH16 8608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57346629 57346629 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDH5 5959 broad.mit.edu 37 12 56118392 56118392 + 3'UTR SNP A C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RDH5 5959 broad.mit.edu;ucsc.edu 37 12 56115023 56115023 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RDH5 5959 hgsc.bcm.edu;ucsc.edu 37 12 56118202 56118203 + Frame_Shift_Ins INS - - G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDM1 201299 broad.mit.edu;hgsc.bcm.edu 37 17 34257122 34257122 + Missense_Mutation SNP C C G rs145918765 unknown;alternate_allele TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDM1 201299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34249624 34249624 + Silent SNP C C T rs112692396 unknown;alternate_allele TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDM1 201299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34257695 34257695 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDX 5962 broad.mit.edu 37 11 110102326 110102326 + 3'UTR DEL A - - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RDX 5962 broad.mit.edu 37 11 110106930 110106930 + Intron SNP T C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RDX 5962 broad.mit.edu 37 11 110108395 110108396 + Intron INS - C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RDX 5962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 110124794 110124794 + Missense_Mutation SNP C C T rs150863373 unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RDX 5962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 110150412 110150412 + Silent SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REC8 9985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24642238 24642238 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REC8 9985 hgsc.bcm.edu 37 14 24646359 24646359 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RECK 8434 broad.mit.edu 37 9 36123173 36123173 + 3'UTR DEL T - - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RECK 8434 hgsc.bcm.edu;ucsc.edu 37 9 36091316 36091317 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RECQL4 9401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145737152 145737152 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RECQL4 9401 hgsc.bcm.edu;ucsc.edu 37 8 145740784 145740784 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RECQL5 9400 broad.mit.edu 37 17 73626918 73626919 + Splice_Site INS - TG TG novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RECQL5 9400 broad.mit.edu 37 17 73626918 73626919 + Splice_Site INS - TG TG novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RECQL5 9400 broad.mit.edu 37 17 73626918 73626919 + Splice_Site INS - TG TG novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RECQL5 9400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73624786 73624786 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RECQL5 9400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73657711 73657711 + Silent SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RECQL5 9400 broad.mit.edu;ucsc.edu 37 17 73654527 73654527 + Missense_Mutation SNP A C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RECQL5 9400 hgsc.bcm.edu 37 17 73626923 73626923 + Splice_Region SNP G G T rs74948442 bycluster TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RECQL5 9400 hgsc.bcm.edu 37 17 73626925 73626925 + Intron SNP G G T rs74632503 bycluster TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RECQL5 9400 hgsc.bcm.edu 37 17 73626925 73626925 + Intron SNP G G T rs74632503 bycluster TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RECQL5 9400 hgsc.bcm.edu 37 17 73626925 73626925 + Splice_Region SNP G G T rs74632503 bycluster TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RECQL 5965 hgsc.bcm.edu;ucsc.edu 37 12 21624427 21624427 + Silent SNP A A T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REEP2 51308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137776732 137776732 + Silent SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REG1B 5968 hgsc.bcm.edu;ucsc.edu 37 2 79314032 79314032 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REG1P 5969 broad.mit.edu 37 2 79363961 79363961 + RNA SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REG3G 130120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 79255044 79255044 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REG3G 130120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 79255386 79255386 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REL 5966 hgsc.bcm.edu 37 2 61147174 61147174 + Splice_Site SNP A A C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RELA 5970 broad.mit.edu 37 11 65422931 65422931 + Intron DEL T - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RELA 5970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65426222 65426222 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RELB 5971 broad.mit.edu 37 19 45525450 45525450 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RELB 5971 broad.mit.edu;hgsc.bcm.edu 37 19 45515352 45515352 + Silent SNP G G T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RELL2 285613 hgsc.bcm.edu;ucsc.edu 37 5 141019628 141019628 + Silent SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RELN 5649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 103130250 103130250 + Silent SNP G G T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RELN 5649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 103293158 103293158 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RELN 5649 hgsc.bcm.edu;ucsc.edu 37 7 103243784 103243793 + Frame_Shift_Del DEL GACACCACAC GACACCACAC - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 GACACCACAC GACACCACAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RELN 5649 hgsc.bcm.edu;ucsc.edu 37 7 103293088 103293088 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RELT 84957 broad.mit.edu;ucsc.edu 37 11 73105299 73105299 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REM1 28954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30064350 30064350 + Missense_Mutation SNP C C G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REM1 28954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30064360 30064360 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REM1 28954 hgsc.bcm.edu 37 20 30064331 30064331 + Missense_Mutation SNP A A G rs1006459 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REM1 28954 hgsc.bcm.edu 37 20 30064331 30064331 + Missense_Mutation SNP A A G rs1006459 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REN 5972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204128614 204128614 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RENBP 5973 broad.mit.edu;hgsc.bcm.edu 37 X 153205589 153205589 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RENBP 5973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153209149 153209149 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REPIN1 29803 broad.mit.edu 37 7 150070103 150070103 + 3'UTR DEL G - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REPIN1 29803 hgsc.bcm.edu;ucsc.edu 37 7 150066808 150066808 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REPS1 85021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 139233902 139233902 + Silent SNP C C T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REPS2 9185 broad.mit.edu 37 X 17165779 17165780 + 3'UTR INS - A A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REPS2 9185 hgsc.bcm.edu;ucsc.edu 37 X 17092279 17092279 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RER1 11079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2333758 2333758 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RERE 473 broad.mit.edu 37 1 8420358 8420358 + Frame_Shift_Del DEL C - - novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RERE 473 broad.mit.edu 37 1 8420609 8420609 + Silent SNP T G G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RERE 473 broad.mit.edu 37 1 8420609 8420609 + Silent SNP T G G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RERE 473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 8419828 8419828 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RERE 473 hgsc.bcm.edu 37 1 8419867 8419867 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RERE 473 hgsc.bcm.edu 37 1 8419868 8419868 + Silent SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RERG 85004 broad.mit.edu 37 12 15261892 15261892 + 3'UTR SNP A C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RERG 85004 broad.mit.edu;ucsc.edu 37 12 15262351 15262351 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REST 5978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57797456 57797456 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REST 5978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57798103 57798103 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REST 5978 hgsc.bcm.edu 37 4 57797283 57797283 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RET 5979 hgsc.bcm.edu 37 10 43602000 43602000 + Silent SNP G G C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RET 5979 hgsc.bcm.edu 37 10 43613844 43613844 + Silent SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RET 5979 hgsc.bcm.edu;ucsc.edu 37 10 43608353 43608353 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID RETNLB 84666 hgsc.bcm.edu;ucsc.edu 37 3 108475993 108475994 + Frame_Shift_Del INS - - GGGGATTA rs5851607 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RETSAT 54884 broad.mit.edu;hgsc.bcm.edu 37 2 85581632 85581632 + 5'UTR SNP A A T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RETSAT 54884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85578126 85578126 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RETSAT 54884 hgsc.bcm.edu;ucsc.edu 37 2 85570442 85570442 + Missense_Mutation SNP C C T rs143283662 byfrequency TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REV1 51455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 100055089 100055089 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REV1 51455 hgsc.bcm.edu;ucsc.edu 37 2 100019183 100019183 + Silent SNP T T G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REV3L 5980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111694884 111694885 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REV3L 5980 hgsc.bcm.edu;ucsc.edu 37 6 111621271 111621271 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REV3L 5980 hgsc.bcm.edu;ucsc.edu 37 6 111711296 111711296 + Silent SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID REXO1 57455 broad.mit.edu;hgsc.bcm.edu 37 19 1827759 1827759 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REXO1 57455 hgsc.bcm.edu 37 19 1825928 1825930 + In_Frame_Del DEL CTC CTC - rs149465929 bycluster;by1000genomes TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REXO1L1 254958 broad.mit.edu 37 8 86573410 86573410 + 3'UTR SNP G A A rs79376271 unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REXO1L1 254958 broad.mit.edu 37 8 86573410 86573410 + 3'UTR SNP G A A rs79376271 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REXO1L1 254958 broad.mit.edu 37 8 86573410 86573410 + 3'UTR SNP G A A rs79376271 unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REXO1L1 254958 broad.mit.edu 37 8 86786310 86786310 + RNA SNP G T T rs4249008 by2hit2allele TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REXO1L1 254958 broad.mit.edu 37 8 86786611 86786611 + RNA SNP T C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx REXO2 25996 broad.mit.edu;hgsc.bcm.edu 37 11 114314631 114314631 + Silent SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq REXO4 57109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136279971 136279971 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39297338 39297338 + Silent SNP C C T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39301920 39301920 + Missense_Mutation SNP C C T rs140065280 unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39308288 39308288 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39308289 39308289 + Missense_Mutation SNP C C A rs1135544 unknown;alternate_allele TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39324978 39324978 + Silent SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC1 5981 hgsc.bcm.edu;ucsc.edu 37 4 39328257 39328258 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC2 5982 broad.mit.edu 37 7 73244316 73244316 + Intron DEL C - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFC2 5982 hgsc.bcm.edu 37 7 73661019 73661019 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RFC4 5984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186508151 186508151 + Silent SNP C C T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RFC4 5984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186508173 186508173 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFC5 5985 hgsc.bcm.edu;ucsc.edu 37 12 118462688 118462688 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RFFL 117584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33348596 33348596 + Silent SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL1 5988 broad.mit.edu 37 22 29835224 29835224 + Intron SNP T C C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL1 5988 broad.mit.edu 37 22 29835320 29835320 + Intron SNP G T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL1 5988 hgsc.bcm.edu 37 22 29834853 29834853 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL2 10739 broad.mit.edu 37 22 32586632 32586632 + 3'UTR SNP C T T rs136466 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL2 10739 broad.mit.edu;hgsc.bcm.edu 37 22 32587083 32587083 + Silent SNP G G C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL2 10739 broad.mit.edu;hgsc.bcm.edu 37 22 32587136 32587136 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL2 10739 broad.mit.edu;hgsc.bcm.edu 37 22 32589043 32589043 + Silent SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL2 10739 hgsc.bcm.edu 37 22 32587023 32587023 + Silent SNP C C G rs55974778 bycluster;by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RFPL3 10738 hgsc.bcm.edu 37 22 32754354 32754355 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL4A 342931 broad.mit.edu 37 19 56273182 56273182 + Frame_Shift_Del DEL A - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL4A 342931 broad.mit.edu 37 19 56274095 56274095 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL4B 442247 broad.mit.edu 37 6 112670461 112670462 + 5'UTR INS - C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL4B 442247 broad.mit.edu 37 6 112671861 112671861 + 3'UTR SNP T A A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFPL4B 442247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112671198 112671198 + Silent SNP T T C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFPL4B(dist=105492) 0 hgsc.bcm.edu;ucsc.edu 37 6 112777990 112777990 + IGR SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFT1 91869 hgsc.bcm.edu 37 3 53153991 53153991 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RFTN1 23180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 16368331 16368331 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFTN1 23180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 16475443 16475443 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFTN1 23180 broad.mit.edu;ucsc.edu 37 3 16535237 16535237 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198436607 198436607 + 3'UTR SNP A T T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198508984 198508984 + Silent SNP C T T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198540329 198540329 + 5'UTR SNP G A A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198540329 198540329 + 5'UTR SNP G A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198540336 198540336 + 5'UTR SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198540353 198540354 + 5'UTR DEL AC - - rs148812496 unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFTN2 130132 broad.mit.edu 37 2 198540353 198540354 + 5'UTR DEL AC - - rs148812496 unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RFWD2 64326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176055007 176055007 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFWD2 64326 hgsc.bcm.edu;ucsc.edu 37 1 176132093 176132093 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RFX1 5989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14083791 14083791 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX1 5989 hgsc.bcm.edu 37 19 14104647 14104647 + Silent SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RFX1 5989 hgsc.bcm.edu 37 19 14104702 14104702 + 5'UTR SNP T T A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX1 5989 hgsc.bcm.edu 37 19 14104704 14104704 + 5'UTR SNP A A T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX5 5993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151315361 151315361 + Silent SNP G G T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX5 5993 hgsc.bcm.edu 37 1 151315565 151315566 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX5 5993 hgsc.bcm.edu 37 1 151317012 151317012 + Silent SNP C C A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX6 222546 broad.mit.edu;hgsc.bcm.edu 37 6 117248535 117248535 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX6 222546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117241586 117241586 + Silent SNP C C T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX7 64864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56390306 56390306 + Silent SNP A A G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX7 64864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56395867 56395867 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX7 64864 hgsc.bcm.edu;ucsc.edu 37 15 56393665 56393665 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RFX8 731220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 102019046 102019047 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RG9MTD1 0 hgsc.bcm.edu 37 3 101284157 101284157 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGAG1 57529 hgsc.bcm.edu 37 X 109696032 109696032 + Silent SNP A A G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGAG1 57529 hgsc.bcm.edu;ucsc.edu 37 X 109696417 109696417 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGAG1 57529 hgsc.bcm.edu;ucsc.edu 37 X 109696889 109696889 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGAG4 340526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71351148 71351148 + Silent SNP C C A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGAG4 340526 hgsc.bcm.edu 37 X 71349973 71349973 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGL1 23179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183835159 183835159 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RGL1 23179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183891413 183891413 + Silent SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID RGL1 23179 broad.mit.edu;ucsc.edu 37 1 183891372 183891372 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGL1 23179 hgsc.bcm.edu;ucsc.edu 37 1 183895346 183895346 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID RGL2 5863 broad.mit.edu 37 6 33263616 33263616 + Intron SNP G T T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGL2 5863 broad.mit.edu;hgsc.bcm.edu 37 6 33259865 33259865 + RNA SNP A A G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGL2 5863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33259932 33259932 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGL2 5863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33260019 33260019 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGL3 57139 broad.mit.edu 37 19 11493966 11493967 + 3'UTR INS - C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGL3 57139 broad.mit.edu 37 19 11529441 11529441 + Frame_Shift_Del DEL C - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGL3 57139 hgsc.bcm.edu 37 19 11527350 11527350 + Splice_Region SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGL3 57139 hgsc.bcm.edu 37 19 11527350 11527350 + Splice_Region SNP A A G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGL4 266747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24034361 24034361 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGMA 56963 broad.mit.edu 37 15 93588747 93588747 + Silent SNP G T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGMA 56963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 93616253 93616253 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGMA 56963 hgsc.bcm.edu 37 15 93616933 93616933 + Intron SNP C C G rs55816698 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGMB 285704 broad.mit.edu 37 5 98106506 98106506 + Intron DEL A - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGMB 285704 broad.mit.edu 37 5 98115932 98115934 + Intron DEL GTT - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 GTT GTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGMB 285704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 98115300 98115300 + Silent SNP A A T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGNEF 0 broad.mit.edu 37 5 73148375 73148375 + Intron SNP G T T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGNEF 0 broad.mit.edu;ucsc.edu 37 5 73193844 73193844 + Missense_Mutation SNP G A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGNEF 0 hgsc.bcm.edu 37 5 73163922 73163922 + Intron SNP T T C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGNEF 0 hgsc.bcm.edu;ucsc.edu 37 5 73144821 73144821 + Silent SNP T T C novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGP1 9827 broad.mit.edu;hgsc.bcm.edu 37 9 35751400 35751400 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGP1 9827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35752830 35752830 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGPD1 400966 broad.mit.edu 37 2 88056472 88056472 + 3'UTR SNP T C C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD1 400966 broad.mit.edu 37 2 88125182 88125182 + Missense_Mutation SNP C G G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD3 653489 broad.mit.edu 37 2 107021431 107021431 + 3'UTR SNP C T T rs71262790 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD3 653489 broad.mit.edu 37 2 107021431 107021431 + 3'UTR SNP C T T rs71262790 unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD3 653489 broad.mit.edu 37 2 107021599 107021599 + 3'UTR SNP C T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD3 653489 broad.mit.edu 37 2 107040985 107040985 + Silent SNP T C C rs140856347 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD3 653489 broad.mit.edu 37 2 107049575 107049575 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD4 285190 broad.mit.edu 37 2 108487877 108487877 + Silent SNP T C C novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD4 285190 broad.mit.edu 37 2 108489172 108489172 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD4 285190 broad.mit.edu 37 2 108507242 108507242 + 3'UTR SNP C A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGPD5 84220 hgsc.bcm.edu 37 2 110585652 110585652 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGPD5 84220 hgsc.bcm.edu 37 2 110593536 110593536 + Missense_Mutation SNP C C A rs2056812 unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGPD5 84220 hgsc.bcm.edu 37 2 110593536 110593536 + Missense_Mutation SNP C C A rs2056812 unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGPD5 84220 hgsc.bcm.edu 37 2 110602778 110602778 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGR 5995 hgsc.bcm.edu 37 10 86008696 86008698 + In_Frame_Del DEL GGA GGA - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS11 8786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 321411 321411 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS11 8786 hgsc.bcm.edu 37 16 321383 321383 + Intron SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS12 6002 broad.mit.edu 37 4 3317854 3317854 + 5'UTR SNP A C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS12 6002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 3318132 3318132 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS12 6002 hgsc.bcm.edu;ucsc.edu 37 4 3432133 3432133 + Splice_Site SNP G G T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS13 6003 broad.mit.edu;hgsc.bcm.edu 37 1 192628688 192628688 + 3'UTR SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS14 10636 broad.mit.edu 37 5 176794983 176794983 + Intron SNP T G G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS17 26575 hgsc.bcm.edu;ucsc.edu 37 6 153332893 153332894 + Frame_Shift_Ins INS - - T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS17 26575 hgsc.bcm.edu;ucsc.edu 37 6 153345485 153345485 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS17(dist=151378) 0 broad.mit.edu;hgsc.bcm.edu 37 6 153603767 153603767 + IGR SNP A A T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS17(dist=151417) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 153603806 153603806 + IGR SNP G G T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS18 64407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 192150572 192150572 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS18 64407 hgsc.bcm.edu 37 1 192150459 192150459 + Silent SNP A A G novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS19 10287 broad.mit.edu 37 20 62705068 62705068 + 3'UTR SNP C T T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS19 10287 hgsc.bcm.edu 37 20 62707927 62707928 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS22 26166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101014479 101014479 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS22 26166 hgsc.bcm.edu 37 8 100990285 100990285 + Silent SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS22 26166 hgsc.bcm.edu 37 8 101076166 101076180 + In_Frame_Del DEL TCTTCTTCTTCTCCT TCTTCTTCTTCTCCT - novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 TCTTCTTCTTCTCCT TCTTCTTCTTCTCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS2 5997 broad.mit.edu 37 1 192780790 192780790 + 3'UTR SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS2 5997 broad.mit.edu 37 1 192780790 192780790 + 3'UTR SNP A C C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS2 5997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 192780679 192780679 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS3 5998 broad.mit.edu 37 9 116303802 116303802 + Intron SNP A T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS3 5998 broad.mit.edu;hgsc.bcm.edu 37 9 116346645 116346645 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS3 5998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116246492 116246492 + Silent SNP T T C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS3 5998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116299108 116299108 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS3 5998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116356377 116356377 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS3 5998 broad.mit.edu;ucsc.edu 37 9 116267783 116267783 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS3 5998 hgsc.bcm.edu 37 9 116359045 116359045 + Intron SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS3 5998 hgsc.bcm.edu;ucsc.edu 37 9 116291500 116291500 + Splice_Site SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS6 9628 broad.mit.edu 37 14 72976891 72976891 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS6 9628 broad.mit.edu 37 14 73031696 73031696 + 3'UTR DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RGS6 9628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 72925078 72925078 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS7 6000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240969479 240969479 + Silent SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS7 6000 hgsc.bcm.edu 37 1 240976981 240976981 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS9 8787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63149596 63149596 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS9 8787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63154436 63154436 + Missense_Mutation SNP G G T rs115440141 byfrequency;by1000genomes;alternate_allele TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RGS9 8787 hgsc.bcm.edu 37 17 63221255 63221255 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGS9 8787 hgsc.bcm.edu;ucsc.edu 37 17 63185455 63185455 + Intron SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGSL1 353299 hgsc.bcm.edu 37 1 182525222 182525222 + 3'UTR SNP A A T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RGSL1 353299 hgsc.bcm.edu;ucsc.edu 37 1 182522582 182522582 + Splice_Region SNP T T G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHAG 6005 hgsc.bcm.edu 37 6 49587014 49587014 + Silent SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHBDD1 84236 hgsc.bcm.edu;ucsc.edu 37 2 227771560 227771560 + Silent SNP T T C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHBDD2 57414 broad.mit.edu;ucsc.edu 37 7 75517559 75517559 + Silent SNP C T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHBDF1 64285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 109479 109479 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHBDF1 64285 broad.mit.edu;ucsc.edu 37 16 109255 109255 + Silent SNP C T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHBDF1 64285 hgsc.bcm.edu 37 16 111871 111871 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHBDF2 79651 broad.mit.edu;ucsc.edu 37 17 74468019 74468019 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHBDL1 9028 hgsc.bcm.edu;ucsc.edu 37 16 726989 726990 + Frame_Shift_Del INS - - AA novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHBDL3 162494 broad.mit.edu 37 17 30649142 30649143 + 3'UTR DEL GT - - rs144261795 bycluster;by1000genomes TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHBDL3 162494 hgsc.bcm.edu 37 17 30621399 30621399 + Silent SNP T T G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHCE 6006 broad.mit.edu 37 1 25688867 25688867 + 3'UTR SNP A C C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHCG 51458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90022631 90022631 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHCG 51458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90039695 90039695 + Silent SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHD 6007 broad.mit.edu 37 1 25633330 25633330 + Intron SNP T C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHEB 6009 broad.mit.edu;hgsc.bcm.edu 37 7 151181869 151181869 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq RHEB 6009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151188050 151188050 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq RHEB 6009 hgsc.bcm.edu 37 7 151188050 151188050 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM SOLID RHEB 6009 hgsc.bcm.edu;ucsc.edu 37 7 151168454 151168454 + Intron SNP G G C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq RHEB 6009 hgsc.bcm.edu;ucsc.edu 37 7 151188050 151188050 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM SOLID RHEBL1 121268 hgsc.bcm.edu 37 12 49463534 49463534 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHO 6010 broad.mit.edu 37 3 129252686 129252686 + 3'UTR DEL T - - rs35397342 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHO 6010 hgsc.bcm.edu 37 3 129249846 129249846 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHOB 388 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20647327 20647327 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHOB 388 hgsc.bcm.edu 37 2 20647607 20647607 + Silent SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RHOBTB1 9886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 62670706 62670706 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHOBTB3 22836 broad.mit.edu 37 5 95129189 95129189 + 3'UTR DEL A - - rs11393784 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOC 389 broad.mit.edu 37 1 113244079 113244079 + 3'UTR SNP G T T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOJ 57381 broad.mit.edu 37 14 63757822 63757822 + 3'UTR SNP G T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOJ 57381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 63735887 63735887 + Splice_Site SNP G G C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHOQ 23433 broad.mit.edu 37 2 46803262 46803262 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOT1 55288 broad.mit.edu 37 17 30477531 30477531 + Intron SNP T A A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOT1 55288 broad.mit.edu 37 17 30536513 30536513 + Intron SNP C A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOT1 55288 broad.mit.edu 37 17 30551875 30551875 + 3'UTR SNP T A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOT1 55288 broad.mit.edu 37 17 30551882 30551882 + 3'UTR SNP A C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOT2 89941 broad.mit.edu 37 16 720686 720686 + Silent SNP G A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RHOT2 89941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 720301 720301 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHOT2 89941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 722787 722787 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHOT2 89941 hgsc.bcm.edu;ucsc.edu 37 16 720318 720318 + Silent SNP C C T novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHPN2 85415 broad.mit.edu;hgsc.bcm.edu 37 19 33493761 33493761 + Silent SNP A A G novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RHPN2 85415 hgsc.bcm.edu 37 19 33471129 33471129 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIC8A 60626 broad.mit.edu 37 11 208842 208842 + 5'UTR SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIC8A 60626 hgsc.bcm.edu 37 11 209895 209897 + In_Frame_Del DEL CCC CCC - rs146124857 bycluster;by1000genomes TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 CCC CCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIC8B 55188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 107209026 107209026 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIC8B 55188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 107237651 107237651 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIC8B 55188 hgsc.bcm.edu;ucsc.edu 37 12 107254049 107254053 + Frame_Shift_Del DEL ATAGT ATAGT - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 ATAGT ATAGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RICH2 0 broad.mit.edu 37 17 12893542 12893542 + 3'UTR SNP G C C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RICTOR 253260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38950756 38950756 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RICTOR 253260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38955727 38955727 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RICTOR 253260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38963027 38963027 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RICTOR 253260 hgsc.bcm.edu;ucsc.edu 37 5 38958913 38958913 + Silent SNP T T A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIF1 55183 broad.mit.edu 37 2 152331761 152331761 + 3'UTR SNP G A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIF1 55183 broad.mit.edu 37 2 152331770 152331770 + 3'UTR DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIF1 55183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152300220 152300220 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIF1 55183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152318926 152318926 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIF1 55183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152318927 152318927 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIF1 55183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152320194 152320194 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RIF1 55183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152324541 152324541 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RIF1 55183 hgsc.bcm.edu 37 2 152319431 152319431 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RILP 83547 broad.mit.edu;hgsc.bcm.edu 37 17 1549693 1549693 + 3'UTR SNP C C G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RILP 83547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1549792 1549792 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RILPL1 353116 broad.mit.edu 37 12 123957223 123957223 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMBP2 23504 broad.mit.edu 37 12 130881469 130881469 + 3'UTR DEL A - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMBP2 23504 broad.mit.edu 37 12 130926698 130926698 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMBP2 23504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130935856 130935856 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMBP2 23504 broad.mit.edu;ucsc.edu 37 12 130926444 130926444 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMBP2 23504 broad.mit.edu;ucsc.edu 37 12 130926846 130926846 + Missense_Mutation SNP C T T rs141970284 unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMBP2 23504 hgsc.bcm.edu;ucsc.edu 37 12 130897239 130897239 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIMBP2 23504 hgsc.bcm.edu;ucsc.edu 37 12 130897262 130897262 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIMBP2(dist=152789) 0 hgsc.bcm.edu 37 12 131155199 131155199 + IGR SNP G G T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMBP3 85376 hgsc.bcm.edu 37 22 20458121 20458122 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMBP3 85376 hgsc.bcm.edu 37 22 20460113 20460115 + In_Frame_Del DEL CCG CCG - rs77846076 unknown;alternate_allele TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CCG CCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMBP3 85376 hgsc.bcm.edu 37 22 20460113 20460115 + In_Frame_Del DEL CCG CCG - rs77846076 unknown;alternate_allele TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 CCG CCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMBP3B 440804 hgsc.bcm.edu 37 22 21742389 21742389 + Silent SNP G G C rs1610467 bycluster TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIMKLA 284716 broad.mit.edu 37 1 42880841 42880842 + 3'UTR INS - CA CA rs3831262 bycluster;by1000genomes TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMKLA 284716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 42880262 42880262 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMKLA 284716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 42880337 42880337 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMKLB 57494 broad.mit.edu;hgsc.bcm.edu 37 12 8902521 8902521 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMKLB 57494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 8904578 8904578 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMKLB 57494 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 8906537 8906537 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS1 22999 broad.mit.edu 37 6 72892128 72892128 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMS1 22999 broad.mit.edu 37 6 72960946 72960946 + Nonsense_Mutation SNP T A A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMS1 22999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 72960119 72960119 + Silent SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS1 22999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 72974723 72974723 + Silent SNP A A G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS1 22999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 73001656 73001656 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS1 22999 hgsc.bcm.edu 37 6 73000565 73000565 + Splice_Site SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIMS1 22999 hgsc.bcm.edu 37 6 73100387 73100388 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS2 9699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104709441 104709441 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS2 9699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104933998 104933998 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS2 9699 broad.mit.edu;ucsc.edu 37 8 104513249 104513249 + Silent SNP T C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIMS2 9699 hgsc.bcm.edu 37 8 104987673 104987673 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID RIMS2 9699 hgsc.bcm.edu;ucsc.edu 37 8 105025708 105025708 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS3 9783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41092246 41092246 + Silent SNP G G T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIMS4 140730 broad.mit.edu;hgsc.bcm.edu 37 20 43386410 43386410 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIN1 9610 hgsc.bcm.edu 37 11 66100041 66100041 + Silent SNP A A C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIN1 9610 hgsc.bcm.edu 37 11 66100043 66100043 + Missense_Mutation SNP G G A rs2282532 bycluster;byfrequency;by1000genomes TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIN1 9610 hgsc.bcm.edu 37 11 66100155 66100155 + Silent SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIN2 54453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 19977395 19977395 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIN2 54453 hgsc.bcm.edu;ucsc.edu 37 20 19955468 19955468 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIN3 79890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93118453 93118453 + Silent SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIN3 79890 hgsc.bcm.edu 37 14 93118739 93118739 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIN3 79890 hgsc.bcm.edu 37 14 93118739 93118739 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIN3 79890 hgsc.bcm.edu;ucsc.edu 37 14 93043822 93043824 + Frame_Shift_Del DEL AGT AGT - novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 AGT AGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RING1 6015 broad.mit.edu 37 6 33180123 33180123 + Frame_Shift_Del DEL A - - novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RINL 126432 broad.mit.edu 37 19 39359605 39359606 + 3'UTR INS - G G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RINL 126432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39360226 39360226 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RINL 126432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39360340 39360340 + Silent SNP G G C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RINL 126432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39361507 39361507 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RINL 126432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39362295 39362295 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RINL 126432 hgsc.bcm.edu 37 19 39361237 39361237 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RINT1 60561 broad.mit.edu 37 7 105207775 105207775 + 3'UTR SNP G A A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIOK1 83732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7395314 7395314 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIOK1 83732 hgsc.bcm.edu;ucsc.edu 37 6 7405162 7405162 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIOK1 83732 hgsc.bcm.edu;ucsc.edu 37 6 7410657 7410657 + Silent SNP G G A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIOK2 55781 broad.mit.edu 37 5 96518962 96518962 + 5'UTR SNP T C C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RIOK2 55781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96503556 96503556 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIOK3 8780 broad.mit.edu;hgsc.bcm.edu 37 18 21056977 21056977 + Missense_Mutation SNP G G A rs111330062 bycluster;byfrequency TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIOK3 8780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21043937 21043937 + Silent SNP T T C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIOK3 8780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21059323 21059323 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIPK1 8737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 3081329 3081329 + Silent SNP T T C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIPK1 8737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 3113551 3113551 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RIPK2 8767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 90796294 90796294 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIPK3 11035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24808452 24808452 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RIPK3 11035 hgsc.bcm.edu 37 14 24808388 24808388 + Silent SNP A A G rs3181247 bycluster;byfrequency;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RIPK4 54101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 43164104 43164104 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLBP1 6017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89760467 89760467 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLF 6018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40661376 40661376 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLF 6018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40704122 40704122 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLF 6018 hgsc.bcm.edu 37 1 40627266 40627266 + Silent SNP G G C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RLF 6018 hgsc.bcm.edu;ucsc.edu 37 1 40702738 40702738 + Silent SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RLF 6018 hgsc.bcm.edu;ucsc.edu 37 1 40703457 40703458 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLF 6018 hgsc.bcm.edu;ucsc.edu 37 1 40705015 40705015 + Silent SNP A A G rs1044739 unknown;alternate_allele TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLIM 51132 hgsc.bcm.edu 37 X 73811648 73811648 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RLIM 51132 hgsc.bcm.edu;ucsc.edu 37 X 73811648 73811648 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RLIM 51132 hgsc.bcm.edu;ucsc.edu 37 X 73812508 73812508 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLN1 6013 hgsc.bcm.edu 37 9 5339628 5339629 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RLTPR 146206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67690372 67690372 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLTPR 146206 broad.mit.edu;ucsc.edu 37 16 67685104 67685104 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RLTPR 146206 hgsc.bcm.edu 37 16 67680181 67680181 + Silent SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RLTPR 146206 hgsc.bcm.edu 37 16 67688684 67688685 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RMI1 80010 broad.mit.edu 37 9 86617962 86617962 + 3'UTR DEL T - - rs11296264 unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RMI1 80010 broad.mit.edu 37 9 86617962 86617962 + 3'UTR DEL T - - rs11296264 unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RMI1 80010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86616068 86616068 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RMI1 80010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86616070 86616070 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RMND1 55005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151726969 151726969 + Silent SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RMND5A 64795 broad.mit.edu 37 2 87113761 87113761 + Intron DEL T - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RMND5A 64795 broad.mit.edu;hgsc.bcm.edu 37 2 86980658 86980658 + Silent SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RMND5B 64777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 177574549 177574549 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RMND5B 64777 hgsc.bcm.edu 37 5 177574747 177574747 + Silent SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNASE11 122651 broad.mit.edu 37 14 21058328 21058328 + 5'Flank SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNASE11 122651 hgsc.bcm.edu;ucsc.edu 37 14 21052170 21052170 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASE12 493901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21058840 21058840 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASE1 6035 hgsc.bcm.edu 37 14 21270037 21270037 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNASE1 6035 hgsc.bcm.edu 37 14 21270086 21270086 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNASE3 6037 broad.mit.edu 37 14 21360444 21360444 + 3'UTR SNP C T T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNASE3 6037 broad.mit.edu;hgsc.bcm.edu 37 14 21359845 21359845 + 5'UTR SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASE3 6037 hgsc.bcm.edu;ucsc.edu 37 14 21359893 21359893 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASE8 122665 broad.mit.edu;ucsc.edu 37 14 21526326 21526326 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNASE9 390443 hgsc.bcm.edu;ucsc.edu 37 14 21024785 21024785 + Silent SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNASEH2A 10535 broad.mit.edu 37 19 12917911 12917911 + Intron SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNASEH2A 10535 broad.mit.edu;hgsc.bcm.edu 37 19 12917802 12917802 + Intron SNP C C G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASEH2A 10535 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12921170 12921170 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASEH2C 84153 broad.mit.edu 37 11 65488243 65488243 + 5'UTR SNP C T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNASEL 6041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182544563 182544563 + Silent SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASEL 6041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182551344 182551344 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNASEL 6041 broad.mit.edu;ucsc.edu 37 1 182551376 182551376 + Silent SNP G A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNASEL 6041 hgsc.bcm.edu 37 1 182555819 182555819 + Silent SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNASEL 6041 hgsc.bcm.edu;ucsc.edu 37 1 182551218 182551218 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNASEN 0 broad.mit.edu 37 5 31423045 31423045 + Nonsense_Mutation SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RND1 27289 broad.mit.edu 37 12 49259538 49259538 + Missense_Mutation SNP G C C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RND1 27289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49251928 49251928 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RND1 27289 hgsc.bcm.edu 37 12 49259528 49259529 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RND2 8153 broad.mit.edu 37 17 41182409 41182412 + 3'UTR DEL TCAT - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 TCAT TCAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF103 7844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86831681 86831681 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF10 9921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121002894 121002894 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF10 9921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121004766 121004766 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF10 9921 broad.mit.edu;ucsc.edu 37 12 121013684 121013684 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF10 9921 hgsc.bcm.edu;ucsc.edu 37 12 120995400 120995400 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF112 7732 hgsc.bcm.edu 37 17 19314919 19314919 + Intron SNP T T C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF113A 7737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119004755 119004755 + Silent SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF113B 140432 hgsc.bcm.edu 37 13 98828965 98828965 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF114 55905 hgsc.bcm.edu;ucsc.edu 37 20 48561952 48561952 + Missense_Mutation SNP A A G rs143932352 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF115 27246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145684607 145684607 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF121 55298 broad.mit.edu;ucsc.edu 37 11 71707272 71707272 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF123 63891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49734822 49734822 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RNF123 63891 hgsc.bcm.edu 37 3 49737755 49737755 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF128 79589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 105970595 105970595 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF128 79589 hgsc.bcm.edu 37 X 105970574 105970574 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF130 55819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179382657 179382657 + Silent SNP A A G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF13 11342 broad.mit.edu 37 3 149679001 149679001 + 3'UTR DEL T - - novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF135 84282 broad.mit.edu 37 17 29302546 29302546 + Intron SNP A G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF135 84282 broad.mit.edu 37 17 29302666 29302666 + Intron SNP C T T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF135 84282 hgsc.bcm.edu;ucsc.edu 37 17 29311739 29311739 + Silent SNP A A T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF139 11236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125498660 125498660 + Nonsense_Mutation SNP T T G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF141 50862 broad.mit.edu;hgsc.bcm.edu 37 11 10536408 10536408 + 3'UTR SNP C C A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF141 50862 hgsc.bcm.edu 37 11 10536463 10536463 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF144A 9781 broad.mit.edu 37 2 7180601 7180601 + 3'UTR DEL T - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF144A 9781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 7164573 7164573 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF144A 9781 hgsc.bcm.edu 37 2 7160712 7160712 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF145 153830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158603687 158603687 + Silent SNP A A G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF145 153830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158603776 158603776 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF145 153830 hgsc.bcm.edu;ucsc.edu 37 5 158601127 158601128 + Frame_Shift_Ins INS - - GGACATT novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF148 378925 broad.mit.edu;hgsc.bcm.edu 37 7 122342196 122342196 + Silent SNP G G C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF148 378925 hgsc.bcm.edu 37 7 122341888 122341888 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF149 284996 hgsc.bcm.edu;ucsc.edu 37 2 101898370 101898370 + Silent SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF14 9604 broad.mit.edu 37 5 141367489 141367489 + 3'UTR SNP T G G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF14 9604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141354483 141354483 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF14 9604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141362998 141362998 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF14 9604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141363016 141363016 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF150 57484 hgsc.bcm.edu;ucsc.edu 37 4 141888943 141888943 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF151 146310 broad.mit.edu 37 16 2018623 2018623 + Silent SNP C A A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF160 0 hgsc.bcm.edu 37 21 30331797 30331797 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF169 254225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74546695 74546695 + Silent SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF17 56163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25353868 25353868 + Silent SNP T T C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF17 56163 hgsc.bcm.edu 37 13 25367296 25367296 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF17 56163 hgsc.bcm.edu 37 13 25367296 25367296 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF17 56163 hgsc.bcm.edu;ucsc.edu 37 13 25367463 25367463 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF17 56163 hgsc.bcm.edu;ucsc.edu 37 13 25419107 25419107 + Silent SNP G G C novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF180 285671 broad.mit.edu 37 5 63513323 63513323 + Intron SNP G A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF180 285671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 63509694 63509694 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF180 285671 hgsc.bcm.edu 37 5 63509562 63509562 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF186 54546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20141319 20141319 + Silent SNP G G C rs138663359 unknown;alternate_allele TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF19A 25897 hgsc.bcm.edu;ucsc.edu 37 8 101271242 101271242 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF19B 127544 broad.mit.edu 37 1 33415334 33415334 + Missense_Mutation SNP A G G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF19B 127544 hgsc.bcm.edu;ucsc.edu 37 1 33402518 33402518 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF19B 127544 hgsc.bcm.edu;ucsc.edu 37 1 33413940 33413940 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF20 56254 broad.mit.edu 37 9 104324630 104324630 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF20 56254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104316360 104316360 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF20 56254 hgsc.bcm.edu;ucsc.edu 37 9 104309416 104309416 + Intron SNP T T C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF212 285498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1075211 1075211 + Missense_Mutation SNP C C G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF212 285498 hgsc.bcm.edu;ucsc.edu 37 4 1075245 1075245 + Silent SNP G G A rs146814980 unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF213 57674 broad.mit.edu 37 17 78337081 78337081 + Silent SNP C G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF213 57674 broad.mit.edu 37 17 78362598 78362598 + Intron SNP A C C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF213 57674 broad.mit.edu;hgsc.bcm.edu 37 17 78337077 78337077 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF213 57674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78321744 78321744 + Silent SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF213 57674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78328249 78328249 + Silent SNP T T C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF213 57674 hgsc.bcm.edu;ucsc.edu 37 17 78343583 78343584 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF216 54476 broad.mit.edu 37 7 5752486 5752486 + Silent SNP G T T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF216 54476 broad.mit.edu 37 7 5800759 5800759 + 5'UTR DEL T - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF216 54476 hgsc.bcm.edu;ucsc.edu 37 7 5781389 5781389 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF217 154214 hgsc.bcm.edu 37 6 125366368 125366368 + Silent SNP C C G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF219 79596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 79212988 79212988 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF219 79596 hgsc.bcm.edu;ucsc.edu 37 13 79190197 79190197 + Silent SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF220 55182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44878049 44878049 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF220 55182 hgsc.bcm.edu 37 1 45098019 45098019 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF25 64320 broad.mit.edu;hgsc.bcm.edu 37 2 219532916 219532916 + Intron SNP G G T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF25 64320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219532706 219532706 + Splice_Site SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF25 64320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219532832 219532832 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF25 64320 hgsc.bcm.edu 37 2 219529592 219529592 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF26 79102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119205888 119205888 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF31 55072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24617487 24617487 + Silent SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF32 140545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156450264 156450264 + Silent SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF34 80196 hgsc.bcm.edu 37 12 121861336 121861336 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF38 152006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 36376116 36376116 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF38 152006 hgsc.bcm.edu;ucsc.edu 37 9 36342774 36342774 + Intron SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF39 80352 broad.mit.edu 37 6 30040952 30040952 + Frame_Shift_Del DEL T - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF40 9810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30774777 30774777 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF40 9810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30776560 30776560 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF40 9810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30777596 30777596 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF40 9810 hgsc.bcm.edu 37 16 30773995 30773995 + Silent SNP C C A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF43 54894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56435542 56435542 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF43 54894 broad.mit.edu;ucsc.edu 37 17 56440700 56440700 + Missense_Mutation SNP A G G rs145164323 unknown;alternate_allele TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF43 54894 hgsc.bcm.edu 37 17 56435751 56435752 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF44 22838 broad.mit.edu 37 5 175956230 175956230 + Intron SNP C A A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNF44 22838 hgsc.bcm.edu;ucsc.edu 37 5 175957205 175957206 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNF4 6047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2498774 2498774 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNF4 6047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2515531 2515531 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNFT1 51136 broad.mit.edu 37 17 58037277 58037277 + Intron DEL A - - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNFT1 51136 broad.mit.edu 37 17 58037277 58037277 + Intron DEL A - - novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNFT1 51136 broad.mit.edu 37 17 58037277 58037277 + Intron DEL A - - novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNFT1 51136 broad.mit.edu 37 17 58037277 58037277 + Intron DEL A - - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNFT2 84900 broad.mit.edu 37 12 117290182 117290183 + 3'UTR INS - TTCCCC TTCCCC novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNFT2 84900 broad.mit.edu 37 12 117290182 117290183 + 3'UTR INS - TTCCCC TTCCCC novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNGTT 8732 broad.mit.edu 37 6 89322274 89322274 + 3'UTR SNP A G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNGTT 8732 broad.mit.edu 37 6 89322311 89322311 + 3'UTR SNP A T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNGTT 8732 broad.mit.edu 37 6 89322311 89322311 + 3'UTR SNP A T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNH1 6050 broad.mit.edu 37 11 498772 498772 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNH1 6050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 499015 499015 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNLS 55328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90122392 90122392 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNMT 8731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 13737037 13737037 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNPC3 55599 hgsc.bcm.edu 37 1 104076467 104076467 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNPC3 55599 hgsc.bcm.edu;ucsc.edu 37 1 104070330 104070330 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNPEP 6051 hgsc.bcm.edu;ucsc.edu 37 1 201970845 201970845 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNPEPL1 57140 broad.mit.edu 37 2 241514017 241514017 + Silent SNP C T T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RNPEPL1 57140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241516160 241516160 + Silent SNP G G A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNPS1 10921 hgsc.bcm.edu;ucsc.edu 37 16 2314218 2314218 + Silent SNP G G C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RNU11 26824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28975159 28975159 + RNA SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RNU6ATAC(dist=83487) 0 hgsc.bcm.edu 37 9 137113173 137113173 + IGR SNP T T C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROBLD3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156025137 156025137 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROBO1 6091 broad.mit.edu 37 3 79067688 79067688 + Intron SNP C T T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO1 6091 broad.mit.edu 37 3 79639075 79639075 + 5'UTR DEL T - - novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO1 6091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 78706388 78706388 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROBO1 6091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 78706390 78706390 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROBO2 6092 broad.mit.edu 37 3 77147239 77147239 + Missense_Mutation SNP G A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO2 6092 broad.mit.edu 37 3 77667102 77667107 + Intron DEL AACTAG - - rs145381366 bycluster;by1000genomes TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 AACTAG AACTAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO2 6092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 77666705 77666705 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROBO2 6092 broad.mit.edu;ucsc.edu 37 3 77651362 77651362 + Silent SNP T C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO2 6092 broad.mit.edu;ucsc.edu 37 3 77695237 77695237 + 3'UTR SNP G A A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO2 6092 hgsc.bcm.edu 37 3 77626662 77626662 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROBO2 6092 hgsc.bcm.edu 37 3 77626662 77626662 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROBO3 64221 broad.mit.edu 37 11 124750448 124750453 + In_Frame_Del DEL CGGAGT - - rs71859853 bycluster;by1000genomes TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 CGGAGT CGGAGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROBO3 64221 hgsc.bcm.edu 37 11 124741007 124741007 + Silent SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROBO4 54538 hgsc.bcm.edu 37 11 124763776 124763776 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROCK1 6093 broad.mit.edu 37 18 18535179 18535179 + Silent SNP G A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROCK1 6093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 18546995 18546995 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROCK1 6093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 18549140 18549140 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROCK1 6093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 18586538 18586538 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROCK1 6093 hgsc.bcm.edu 37 18 18600158 18600158 + Silent SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROCK1 6093 hgsc.bcm.edu;ucsc.edu 37 18 18629104 18629105 + Frame_Shift_Ins INS - - A rs35810558 unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROCK2 9475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11348011 11348011 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROCK2 9475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11361380 11361380 + Silent SNP T T C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROCK2 9475 broad.mit.edu;ucsc.edu 37 2 11348012 11348012 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROCK2 9475 hgsc.bcm.edu;ucsc.edu 37 2 11389808 11389814 + Frame_Shift_Del DEL GGCAAAG GGCAAAG - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 GGCAAAG GGCAAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROD1 0 broad.mit.edu;hgsc.bcm.edu 37 9 115038125 115038125 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROD1 0 hgsc.bcm.edu;ucsc.edu 37 9 114993689 114993689 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROM1 6094 hgsc.bcm.edu 37 11 62381083 62381083 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROPN1 54763 broad.mit.edu 37 3 123687916 123687916 + 3'UTR SNP A C C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROPN1 54763 hgsc.bcm.edu 37 3 123694287 123694287 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROPN1B 152015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 125702160 125702160 + Silent SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROPN1B 152015 hgsc.bcm.edu;ucsc.edu 37 3 125690967 125690967 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROPN1L 83853 hgsc.bcm.edu 37 5 10461349 10461350 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROR1 4919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 64643611 64643611 + Silent SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROR2 4920 hgsc.bcm.edu 37 9 94493360 94493360 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID RORA 6095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 60789779 60789779 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RORB 6096 broad.mit.edu 37 9 77112628 77112628 + 5'UTR DEL T - - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RORB 6096 hgsc.bcm.edu;ucsc.edu 37 9 77282715 77282715 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RORC 6097 broad.mit.edu 37 1 151779775 151779775 + 3'UTR SNP A G G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117609777 117609777 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117647553 117647553 + Silent SNP C C T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117665413 117665413 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117674152 117674152 + Splice_Site SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117677884 117677884 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117681074 117681074 + Silent SNP T T C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ROS1 6098 hgsc.bcm.edu;ucsc.edu 37 6 117706977 117706977 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ROS1 6098 hgsc.bcm.edu;ucsc.edu 37 6 117718129 117718129 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55533660 55533660 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55539331 55539331 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55540593 55540593 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55542355 55542355 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55542521 55542521 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1 6101 hgsc.bcm.edu 37 8 55540233 55540233 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RP1 6101 hgsc.bcm.edu;ucsc.edu 37 8 55539690 55539695 + In_Frame_Del DEL TACCAG TACCAG - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 TACCAG TACCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 broad.mit.edu;hgsc.bcm.edu 37 8 10468848 10468848 + Silent SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10465398 10465398 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10470413 10470413 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10466019 10466019 + Silent SNP A A T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10466019 10466019 + Silent SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10466026 10466026 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10467571 10467571 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10467579 10467581 + In_Frame_Del DEL TTC TTC - rs143686100 by1000genomes TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10467579 10467581 + In_Frame_Del DEL TTC TTC - rs143686100 by1000genomes TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RP1L1 94137 hgsc.bcm.edu 37 8 10467579 10467581 + In_Frame_Del DEL TTC TTC - rs143686100 by1000genomes TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10467581 10467581 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10467605 10467605 + Missense_Mutation SNP C C T rs61503212 bycluster TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu 37 8 10467636 10467636 + Silent SNP T T C rs4840500 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RP1L1 94137 hgsc.bcm.edu;ucsc.edu 37 8 10465965 10465965 + Silent SNP T T C rs112534810 unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPA2 6118 broad.mit.edu 37 1 28240591 28240591 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPA3 6119 broad.mit.edu;hgsc.bcm.edu 37 7 7680049 7680049 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPA4 29935 broad.mit.edu;hgsc.bcm.edu 37 X 96139817 96139817 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPAIN 84268 broad.mit.edu 37 17 5331651 5331651 + Intron SNP G A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPAIN 84268 hgsc.bcm.edu;ucsc.edu 37 17 5326075 5326075 + Intron SNP C C G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPAP1 26015 broad.mit.edu 37 15 41815528 41815528 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPAP1 26015 broad.mit.edu 37 15 41815547 41815547 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPAP1 26015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41813028 41813028 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPAP1 26015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41822090 41822090 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPAP1 26015 hgsc.bcm.edu;ucsc.edu 37 15 41810335 41810335 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPAP1 26015 hgsc.bcm.edu;ucsc.edu 37 15 41819689 41819689 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPAP2 79871 hgsc.bcm.edu 37 1 92852587 92852587 + 3'UTR SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPAP3 79657 hgsc.bcm.edu;ucsc.edu 37 12 48091482 48091482 + Silent SNP A A T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPE 6120 hgsc.bcm.edu 37 2 210874384 210874384 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPE65 6121 broad.mit.edu 37 1 68895274 68895274 + 3'UTR DEL T - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPE65 6121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 68897205 68897206 + Frame_Shift_Del INS - - A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPE65 6121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 68903915 68903915 + Silent SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPE65 6121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 68906539 68906539 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPE65 6121 hgsc.bcm.edu;ucsc.edu 37 1 68914392 68914392 + Intron SNP G G A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPF1 80135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84945169 84945169 + Silent SNP C C A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPF1 80135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84962024 84962024 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPF2 84154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111346663 111346663 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPF2 84154 hgsc.bcm.edu;ucsc.edu 37 6 111320903 111320903 + Intron SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPGR 6103 broad.mit.edu;ucsc.edu 37 X 38182653 38182653 + Silent SNP G A A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPGR 6103 hgsc.bcm.edu 37 X 38145180 38145180 + Silent SNP C C T rs139462910 byfrequency TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGR 6103 hgsc.bcm.edu 37 X 38145700 38145700 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGR 6103 hgsc.bcm.edu 37 X 38145704 38145704 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGR 6103 hgsc.bcm.edu;ucsc.edu 37 X 38144799 38144799 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGR 6103 hgsc.bcm.edu;ucsc.edu 37 X 38180284 38180284 + Silent SNP T T G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPGRIP1 57096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21771589 21771589 + Silent SNP C C T novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGRIP1 57096 broad.mit.edu;ucsc.edu 37 14 21793025 21793025 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPGRIP1 57096 hgsc.bcm.edu;ucsc.edu 37 14 21771501 21771501 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPGRIP1 57096 hgsc.bcm.edu;ucsc.edu 37 14 21793467 21793467 + Silent SNP G G A rs35207255 bycluster;by1000genomes TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGRIP1 57096 hgsc.bcm.edu;ucsc.edu 37 14 21796727 21796727 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPGRIP1L 23322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53692370 53692370 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPH3A 22895 broad.mit.edu 37 12 113307382 113307382 + Intron DEL A - - rs113867631 unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPH3A 22895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113285641 113285641 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPH3A 22895 hgsc.bcm.edu 37 12 113314465 113314465 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPH3A 22895 hgsc.bcm.edu;ucsc.edu 37 12 113304584 113304584 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPH3AL 9501 broad.mit.edu;hgsc.bcm.edu 37 17 169255 169255 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPH3AL 9501 hgsc.bcm.edu 37 17 171082 171082 + Silent SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPH3AL 9501 hgsc.bcm.edu 37 17 171098 171098 + Silent SNP T T G rs73971738 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPH3AL 9501 hgsc.bcm.edu 37 17 171098 171098 + Silent SNP T T G rs73971738 bycluster;byfrequency;by1000genomes TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPH3AL 9501 hgsc.bcm.edu;ucsc.edu 37 17 171101 171102 + Frame_Shift_Ins INS - - CT novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPIA 22934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 89036070 89036070 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL10A 4736 hgsc.bcm.edu 37 6 35436261 35436261 + Intron SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL10A 4736 hgsc.bcm.edu 37 6 35437244 35437247 + Frame_Shift_Del DEL CCCA CCCA - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 CCCA CCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL11 6135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24022342 24022342 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL13AP20 387841 broad.mit.edu 37 12 13028751 13028751 + Missense_Mutation SNP G C C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL13AP6 644511 broad.mit.edu 37 10 112696573 112696573 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL14 9045 broad.mit.edu 37 3 40498846 40498846 + 5'UTR SNP G T T rs11539056 unknown;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL14 9045 broad.mit.edu 37 3 40498846 40498846 + 5'UTR SNP G T T rs11539056 unknown;alternate_allele TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL14 9045 broad.mit.edu;ucsc.edu 37 3 40498824 40498824 + 5'UTR SNP T C C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL18 6141 broad.mit.edu;hgsc.bcm.edu 37 19 49121088 49121088 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL18 6141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49119434 49119434 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL18A 6142 broad.mit.edu;hgsc.bcm.edu 37 19 17972160 17972160 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL19 6143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37357533 37357533 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL19 6143 hgsc.bcm.edu 37 17 37360844 37360844 + Silent SNP G G A rs72823350 bycluster;by1000genomes TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL22 6146 broad.mit.edu;hgsc.bcm.edu 37 1 6246862 6246862 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL22 6146 hgsc.bcm.edu 37 1 6246851 6246852 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL22L1 200916 broad.mit.edu 37 3 170582966 170582966 + 3'UTR DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL22L1 200916 broad.mit.edu 37 3 170583143 170583143 + 3'UTR DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL22L1 200916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170584196 170584196 + Silent SNP A A G novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL22L1 200916 broad.mit.edu;ucsc.edu 37 3 170585834 170585834 + Silent SNP G T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL22L1 200916 hgsc.bcm.edu;ucsc.edu 37 3 170584200 170584200 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL23 9349 broad.mit.edu 37 17 37006922 37006922 + Intron DEL T - - rs34258429 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL23 9349 broad.mit.edu 37 17 37006922 37006923 + Intron DEL TT - - rs34258429 unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL23AP53 644128 broad.mit.edu 37 8 163325 163325 + RNA SNP C T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL23AP53 644128 broad.mit.edu 37 8 163401 163401 + RNA SNP G C C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL23AP82 284942 hgsc.bcm.edu 37 22 51214191 51214191 + RNA SNP G G A rs793078 bycluster TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL26L1 51121 broad.mit.edu;hgsc.bcm.edu 37 5 172386880 172386880 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL26P30 653147 hgsc.bcm.edu 37 11 2356701 2356701 + NCSD SNP C C T rs113441481 bycluster;byfrequency;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL27 6155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41154776 41154776 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL27 6155 hgsc.bcm.edu;ucsc.edu 37 17 41154694 41154694 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL27A 6157 broad.mit.edu 37 11 8704257 8704257 + 5'UTR SNP A G G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL27A 6157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 8704319 8704319 + 5'UTR SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL28 6158 broad.mit.edu 37 19 55898970 55898970 + Intron DEL T - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL28 6158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55899365 55899365 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL30 6156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99054891 99054891 + Missense_Mutation SNP G G C rs9879 unknown;alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL30 6156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99054939 99054939 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL31 6160 broad.mit.edu;hgsc.bcm.edu 37 2 101622534 101622534 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL31P11 641311 broad.mit.edu 37 1 161654816 161654816 + RNA SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL34 6164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109543328 109543328 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL35 11224 broad.mit.edu 37 9 127620168 127620168 + 3'UTR SNP C A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL3 6122 broad.mit.edu 37 22 39712965 39712965 + Intron SNP A C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL3 6122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39713525 39713525 + Silent SNP G G A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL3 6122 broad.mit.edu;ucsc.edu 37 22 39709724 39709724 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL36AL 6166 broad.mit.edu 37 14 50085461 50085461 + 3'UTR SNP C T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL37 6167 hgsc.bcm.edu;ucsc.edu 37 5 40832689 40832689 + Intron SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL37A 6168 broad.mit.edu 37 2 217364842 217364842 + Intron SNP C G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL3L 6123 broad.mit.edu 37 16 1994677 1994677 + 3'UTR SNP C A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL3L 6123 broad.mit.edu;ucsc.edu 37 16 1997038 1997038 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL4 6124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 66795006 66795006 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL4 6124 hgsc.bcm.edu 37 15 66791809 66791809 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL5 6125 broad.mit.edu 37 1 93298416 93298416 + Intron SNP T G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL5 6125 broad.mit.edu 37 1 93298416 93298416 + Intron SNP T G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL5 6125 broad.mit.edu 37 1 93298416 93298416 + Intron SNP T G G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL5 6125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93299160 93299160 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL5 6125 broad.mit.edu;ucsc.edu 37 1 93307322 93307322 + Splice_Site SNP G C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL5 6125 hgsc.bcm.edu 37 1 93301855 93301857 + In_Frame_Del DEL TAT TAT - novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 TAT TAT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL7 6129 broad.mit.edu;hgsc.bcm.edu 37 8 74204500 74204500 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPL7L1 285855 hgsc.bcm.edu 37 6 42853798 42853798 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPL9 6133 broad.mit.edu 37 4 39458973 39458974 + Intron INS - A A rs111293077 unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPL9 6133 broad.mit.edu;hgsc.bcm.edu 37 4 39459339 39459339 + Intron SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPLP0 6175 broad.mit.edu;hgsc.bcm.edu 37 12 120636946 120636946 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPLP0P2 113157 broad.mit.edu 37 11 61404307 61404307 + Silent SNP G T T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPLP0P2 113157 broad.mit.edu 37 11 61405252 61405252 + 3'UTR DEL A - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPN1 6184 broad.mit.edu 37 3 128339072 128339072 + 3'UTR DEL G - - rs144622086 by1000genomes TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPN1 6184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128350832 128350832 + Nonsense_Mutation SNP T T A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPN1 6184 hgsc.bcm.edu 37 3 128356662 128356662 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPN2 6185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 35842239 35842239 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPN2 6185 hgsc.bcm.edu;ucsc.edu 37 20 35842247 35842247 + Silent SNP G G A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPP21 79897 hgsc.bcm.edu 37 6 30314294 30314294 + Silent SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPP30 10556 broad.mit.edu 37 10 92660488 92660488 + 3'UTR SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPRD1A 55197 broad.mit.edu 37 18 33572841 33572841 + Intron DEL A - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPRD2 23248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150432593 150432593 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPRD2 23248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150444821 150444821 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPRD2 23248 broad.mit.edu;ucsc.edu 37 1 150445629 150445629 + Nonsense_Mutation SNP C A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS10P7 376693 broad.mit.edu 37 1 201489310 201489311 + RNA INS - T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS11 6205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50001200 50001200 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS11 6205 hgsc.bcm.edu 37 19 49999713 49999713 + 5'UTR SNP G G T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS12 6206 broad.mit.edu;hgsc.bcm.edu 37 6 133137575 133137575 + Intron SNP A A G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS13 6207 broad.mit.edu;hgsc.bcm.edu 37 11 17098784 17098784 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS13 6207 hgsc.bcm.edu 37 11 17099213 17099213 + 5'UTR SNP G G A rs78520678 bycluster;byfrequency;by1000genomes TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS15 6209 broad.mit.edu;ucsc.edu 37 19 1438450 1438450 + Intron SNP T A A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS18 6222 broad.mit.edu;hgsc.bcm.edu 37 6 33240437 33240437 + Silent SNP T T C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS18 6222 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33240470 33240470 + Silent SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS19BP1 91582 broad.mit.edu 37 22 39925423 39925423 + 3'UTR SNP G T T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS19BP1 91582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39928457 39928457 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS20 6224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56986629 56986629 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS21 6227 broad.mit.edu 37 20 60962388 60962388 + 5'UTR SNP C A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS21 6227 broad.mit.edu 37 20 60963180 60963181 + Intron INS - C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS21 6227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60963416 60963419 + Frame_Shift_Del DEL TCAA TCAA - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 TCAA TCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS21 6227 hgsc.bcm.edu 37 20 60962917 60962918 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS24 6229 broad.mit.edu 37 10 79814397 79814397 + Nonsense_Mutation SNP C T T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS24 6229 hgsc.bcm.edu 37 10 79797692 79797692 + Intron SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS2 6187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2012906 2012906 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS26 6231 broad.mit.edu;hgsc.bcm.edu 37 12 56436231 56436231 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS27 6232 broad.mit.edu 37 1 153963625 153963625 + Missense_Mutation SNP A C C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS27 6232 hgsc.bcm.edu 37 1 153963270 153963270 + 5'UTR SNP A A T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS27A 6233 hgsc.bcm.edu;ucsc.edu 37 2 55462091 55462091 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS29 6235 broad.mit.edu;hgsc.bcm.edu 37 14 50053045 50053045 + Missense_Mutation SNP T T C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS2P32 256355 broad.mit.edu 37 7 23531029 23531030 + 3'UTR INS - A A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS2P32 256355 broad.mit.edu 37 7 23531029 23531030 + 3'UTR INS - A A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS3 6188 broad.mit.edu;hgsc.bcm.edu 37 11 75113456 75113456 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS3 6188 hgsc.bcm.edu 37 11 75113406 75113406 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS3A 6189 broad.mit.edu 37 4 152025085 152025085 + Intron SNP A T T rs139835933 bycluster;by1000genomes;alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS3A 6189 broad.mit.edu;hgsc.bcm.edu 37 4 152022142 152022142 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS4Y1 6192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 2709666 2709666 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS5 6193 hgsc.bcm.edu;ucsc.edu 37 19 58906040 58906040 + Splice_Region SNP T T A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS6KA1 6195 broad.mit.edu 37 1 26898427 26898427 + Intron SNP C A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS6KA1 6195 broad.mit.edu;hgsc.bcm.edu 37 1 26887302 26887302 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS6KA1 6195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26897964 26897964 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS6KA6 27330 hgsc.bcm.edu;ucsc.edu 37 X 83320077 83320077 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS6KA6 27330 hgsc.bcm.edu;ucsc.edu 37 X 83400576 83400576 + Intron SNP A A G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS6KB1 6198 broad.mit.edu;hgsc.bcm.edu 37 17 58022845 58022845 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS6KB2 6199 hgsc.bcm.edu 37 11 67197002 67197002 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS6KB2 6199 hgsc.bcm.edu;ucsc.edu 37 11 67196440 67196440 + Intron SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPS6KC1 26750 broad.mit.edu;hgsc.bcm.edu 37 1 213349818 213349818 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RPS6KC1 26750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 213302912 213302912 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RPS6KC1 26750 broad.mit.edu;ucsc.edu 37 1 213341274 213341274 + Silent SNP C T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS6KC1 26750 broad.mit.edu;ucsc.edu 37 1 213415458 213415458 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS6KL1 83694 broad.mit.edu 37 14 75374134 75374134 + Intron SNP T C C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPS6KL1 83694 hgsc.bcm.edu;ucsc.edu 37 14 75376624 75376624 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RPS7 6201 broad.mit.edu 37 2 3624313 3624313 + Intron SNP C G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPSAP58 388524 broad.mit.edu 37 19 24010099 24010099 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPSAP9 653162 broad.mit.edu 37 9 79014569 79014570 + 3'UTR INS - A A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPSAP9 653162 broad.mit.edu 37 9 79014569 79014570 + 3'UTR INS - A A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPTN 126638 broad.mit.edu 37 1 152126934 152126934 + 3'UTR DEL A - - rs145089986 bycluster;by1000genomes TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPTN 126638 broad.mit.edu 37 1 152127163 152127163 + 3'UTR SNP G A A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPTN 126638 broad.mit.edu;ucsc.edu 37 1 152127611 152127611 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPTOR 57521 broad.mit.edu 37 17 78938204 78938204 + 3'UTR SNP G C C rs3751936 bycluster;byfrequency;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPTOR 57521 broad.mit.edu 37 17 78938208 78938208 + 3'UTR SNP C T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPTOR 57521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78727975 78727975 + Missense_Mutation SNP G G A rs148973724 unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPTOR 57521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78935234 78935234 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPUSD2 27079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40865743 40865743 + Silent SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPUSD2 27079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40866017 40866017 + Missense_Mutation SNP G G C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RPUSD2 27079 broad.mit.edu;ucsc.edu 37 15 40866002 40866002 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RPUSD4 84881 hgsc.bcm.edu 37 11 126080885 126080885 + Silent SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RQCD1 9125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219457120 219457120 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RQCD1 9125 hgsc.bcm.edu 37 2 219447712 219447712 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RQCD1 9125 hgsc.bcm.edu;ucsc.edu 37 2 219447710 219447710 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRAD 6236 hgsc.bcm.edu 37 16 66956063 66956063 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRAGC 64121 hgsc.bcm.edu 37 1 39305249 39305249 + Silent SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRBP1 6238 broad.mit.edu 37 20 17640580 17640580 + Silent SNP T G G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRBP1 6238 broad.mit.edu;ucsc.edu 37 20 17605265 17605265 + Missense_Mutation SNP C G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRBP1 6238 broad.mit.edu;ucsc.edu 37 20 17641024 17641024 + Silent SNP G T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RREB1 6239 broad.mit.edu 37 6 7181959 7181959 + Intron SNP C T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7229380 7229380 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7230362 7230362 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7231266 7231266 + Silent SNP T T A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7231393 7231393 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7248780 7248780 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RREB1 6239 hgsc.bcm.edu 37 6 7231121 7231121 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RREB1 6239 hgsc.bcm.edu;ucsc.edu 37 6 7189542 7189542 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRM1 6240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4133183 4133183 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRM1 6240 hgsc.bcm.edu;ucsc.edu 37 11 4144587 4144587 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRM2 6241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10269379 10269379 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRM2 6241 hgsc.bcm.edu 37 2 10262859 10262859 + Silent SNP G G A rs72542787 bycluster;byfrequency;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRN3 54700 broad.mit.edu 37 16 15155580 15155580 + 3'UTR SNP C A A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRN3 54700 broad.mit.edu;hgsc.bcm.edu 37 16 15170407 15170407 + Intron SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRN3P1 730092 broad.mit.edu 37 16 21817457 21817457 + Silent SNP G A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRN3P1 730092 broad.mit.edu 37 16 21817482 21817482 + Silent SNP C T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRN3P3 100131998 broad.mit.edu 37 16 22441236 22441236 + RNA SNP G A A rs71387644 unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRN3P3 100131998 broad.mit.edu 37 16 22444123 22444123 + RNA SNP G A A rs2974874 unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRN3P3 100131998 broad.mit.edu 37 16 22444123 22444123 + RNA SNP G A A rs2974874 unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRNAD1 51093 hgsc.bcm.edu 37 1 156706497 156706497 + Silent SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99116876 99116876 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99120376 99120376 + Splice_Site SNP C C A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99125881 99125881 + Silent SNP T T C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99145673 99145673 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99156039 99156039 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99156040 99156040 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP12 23223 hgsc.bcm.edu 37 10 99132829 99132830 + Frame_Shift_Ins INS - - GC novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRP12 23223 hgsc.bcm.edu;ucsc.edu 37 10 99148128 99148128 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRP15 51018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 218458677 218458677 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP8 23378 broad.mit.edu 37 11 6621253 6621253 + 3'UTR SNP C T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRP8 23378 broad.mit.edu 37 11 6621304 6621304 + 3'UTR SNP G A A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRP8 23378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6621799 6621800 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP9 9136 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51971260 51971260 + Silent SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRP9 9136 hgsc.bcm.edu 37 3 51972151 51972151 + Silent SNP C C G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RRS1 23212 broad.mit.edu 37 8 67341565 67341565 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RRS1 23212 broad.mit.edu;hgsc.bcm.edu 37 8 67342089 67342089 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RRS1 23212 hgsc.bcm.edu;ucsc.edu 37 8 67342008 67342009 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RS1 6247 broad.mit.edu 37 X 18659978 18659978 + 3'UTR DEL A - - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RS1 6247 hgsc.bcm.edu 37 X 18690199 18690199 + 5'UTR SNP T T C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RS1 6247 hgsc.bcm.edu 37 X 18660196 18660196 + Silent SNP G G A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSAD1 55316 broad.mit.edu;hgsc.bcm.edu 37 17 48562232 48562232 + 3'UTR SNP T T A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSAD2 91543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 7023569 7023569 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSAD2 91543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 7023597 7023597 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSBN1L 222194 hgsc.bcm.edu;ucsc.edu 37 7 77379172 77379172 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSC1A1 6248 hgsc.bcm.edu;ucsc.edu 37 1 15987206 15987206 + Frame_Shift_Del DEL T T - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSF1 51773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77378304 77378304 + Silent SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSF1 51773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77412360 77412360 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSF1 51773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77412660 77412660 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSF1 51773 hgsc.bcm.edu;ucsc.edu 37 11 77378369 77378369 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSL1D1 26156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11935566 11935566 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPH10B 222967 hgsc.bcm.edu 37 7 5972412 5972412 + Splice_Site SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B 222967 hgsc.bcm.edu 37 7 5983063 5983063 + Missense_Mutation SNP C C T rs17853305 unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B 222967 hgsc.bcm.edu 37 7 5983063 5983063 + Missense_Mutation SNP C C T rs17853305 unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B 222967 hgsc.bcm.edu 37 7 5984721 5984721 + Silent SNP C C T rs71531348 unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B 222967 hgsc.bcm.edu 37 7 6000354 6000354 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B 222967 hgsc.bcm.edu 37 7 6004123 6004123 + Splice_Region SNP T T C rs871040 unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B2 728194 broad.mit.edu 37 7 6006558 6006558 + Missense_Mutation SNP C T T rs150311566 unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPH10B2 728194 hgsc.bcm.edu 37 7 6799935 6799935 + Splice_Region SNP A A G rs871040 unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B2 728194 hgsc.bcm.edu 37 7 6806405 6806405 + Missense_Mutation SNP T T C rs71531350 bycluster TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B2 728194 hgsc.bcm.edu 37 7 6816032 6816032 + Silent SNP T T C rs17853307 unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH10B2 728194 hgsc.bcm.edu 37 7 6820999 6820999 + Missense_Mutation SNP G G A rs17853305 unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH1 89765 hgsc.bcm.edu;ucsc.edu 37 21 43897417 43897417 + Silent SNP G G A rs75626002 byfrequency TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPH3 83861 broad.mit.edu;hgsc.bcm.edu 37 6 159403509 159403509 + Intron SNP A A T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPH3 83861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 159420742 159420742 + Silent SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPH6A 81492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46317992 46317992 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPH6A 81492 hgsc.bcm.edu 37 19 46318216 46318216 + Silent SNP C C T rs61730712 bycluster;byfrequency TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSPH9 221421 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43613007 43613007 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPO1 284654 broad.mit.edu 37 1 38078196 38078197 + 3'UTR INS - TA TA rs66697849 unknown;alternate_allele TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPO1 284654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38079542 38079542 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPO2 340419 broad.mit.edu 37 8 109094887 109094887 + 5'UTR SNP G C C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPO3 84870 broad.mit.edu 37 6 127517220 127517220 + 3'UTR SNP C T T rs184813574 unknown;alternate_allele TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPO3 84870 broad.mit.edu 37 6 127517220 127517220 + 3'UTR SNP C T T rs184813574 unknown;alternate_allele TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPO3 84870 broad.mit.edu 37 6 127517220 127517220 + 3'UTR SNP C T T rs184813574 unknown;alternate_allele TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPO4 343637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 948634 948634 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPRY1 89970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57255221 57255221 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPRY1 89970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57265167 57265167 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPRY1 89970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57265168 57265168 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSPRY1 89970 broad.mit.edu;ucsc.edu 37 16 57255223 57255223 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSPRY1 89970 hgsc.bcm.edu 37 16 57261305 57261305 + Silent SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSRC1 51319 hgsc.bcm.edu;ucsc.edu 37 3 158261178 158261178 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RSRC2 65117 broad.mit.edu;ucsc.edu 37 12 123003401 123003401 + Missense_Mutation SNP G T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RSRC2 65117 hgsc.bcm.edu 37 12 123005002 123005002 + RNA SNP A A T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSU1 6251 broad.mit.edu;hgsc.bcm.edu 37 10 16794515 16794515 + Intron SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RSU1 6251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16737058 16737058 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTCD1 0 hgsc.bcm.edu;ucsc.edu 37 1 100741273 100741273 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTF1 23168 broad.mit.edu 37 15 41769654 41769654 + Splice_Site SNP A T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTF1 23168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41762545 41762545 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTF1 23168 hgsc.bcm.edu 37 15 41726838 41726838 + Intron SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTF1 23168 hgsc.bcm.edu 37 15 41727416 41727416 + Intron SNP T T G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTKN2 219790 broad.mit.edu;hgsc.bcm.edu 37 10 63999439 63999439 + Silent SNP G G T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTKN2 219790 broad.mit.edu;hgsc.bcm.edu 37 10 63999440 63999440 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTKN2 219790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63958010 63958010 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTKN2 219790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63958099 63958099 + Silent SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTKN2 219790 hgsc.bcm.edu;ucsc.edu 37 10 63976913 63976918 + In_Frame_Del DEL AGCTTC AGCTTC - rs149331212 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 AGCTTC AGCTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTKN 6242 hgsc.bcm.edu 37 2 74657145 74657145 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTL1 388015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 101350371 101350371 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTL1 388015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 101351021 101351021 + Silent SNP C C T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTL1 388015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 101351082 101351082 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTL1 388015 broad.mit.edu;ucsc.edu 37 14 101347402 101347402 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN1 6252 broad.mit.edu 37 14 60074292 60074292 + Intron DEL G - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN1 6252 broad.mit.edu 37 14 60194207 60194207 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN1 6252 broad.mit.edu;ucsc.edu 37 14 60212848 60212848 + Missense_Mutation SNP T C C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN1 6252 hgsc.bcm.edu;ucsc.edu 37 14 60063519 60063519 + Intron SNP A A T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTN2 6253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45996518 45996518 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTN2 6253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45997582 45997582 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTN2 6253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45997672 45997672 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTN3 10313 broad.mit.edu 37 11 63449001 63449001 + 5'UTR SNP C G G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN3 10313 broad.mit.edu 37 11 63517659 63517659 + Silent SNP C A A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN3 10313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63487838 63487838 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTN3 10313 hgsc.bcm.edu;ucsc.edu 37 11 63486754 63486754 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTN3 10313 hgsc.bcm.edu;ucsc.edu 37 11 63486909 63486909 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTN4 57142 broad.mit.edu;ucsc.edu 37 2 55253832 55253832 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN4IP1 84816 broad.mit.edu 37 6 107077059 107077060 + 5'UTR INS - A A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN4IP1 84816 broad.mit.edu 37 6 107077061 107077063 + 5'UTR DEL AAG - - rs149924788 by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN4IP1 84816 broad.mit.edu;ucsc.edu 37 6 107067108 107067108 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RTN4IP1 84816 hgsc.bcm.edu;ucsc.edu 37 6 107069326 107069326 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTN4RL1 146760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1840903 1840903 + Silent SNP G G T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTTN 25914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 67742714 67742714 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTTN 25914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 67776858 67776858 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTTN 25914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 67872495 67872495 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTTN 25914 hgsc.bcm.edu 37 18 67871413 67871413 + Silent SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTTN 25914 hgsc.bcm.edu;ucsc.edu 37 18 67684795 67684795 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RTTN 25914 hgsc.bcm.edu;ucsc.edu 37 18 67727215 67727215 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RTTN 25914 hgsc.bcm.edu;ucsc.edu 37 18 67871409 67871411 + In_Frame_Del DEL CAG CAG - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUFY2 55680 broad.mit.edu 37 10 70136913 70136913 + Intron DEL T - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUFY2 55680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70140991 70140991 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUFY2 55680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70141061 70141061 + Silent SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUFY3 22902 broad.mit.edu 37 4 71588132 71588132 + 5'UTR DEL T - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUFY3 22902 broad.mit.edu 37 4 71588132 71588132 + 5'UTR DEL T - - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUFY3 22902 broad.mit.edu 37 4 71588132 71588132 + 5'UTR DEL T - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUFY3 22902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71634345 71634345 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUFY3 22902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71648807 71648807 + Splice_Site SNP G G T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUFY4 285180 broad.mit.edu 37 2 218954615 218954615 + Intron SNP C T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUFY4 285180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 218954028 218954028 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUFY4 285180 hgsc.bcm.edu 37 2 218935328 218935328 + RNA SNP C C A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNDC2A 0 broad.mit.edu 37 16 12146122 12146122 + 3'UTR SNP G A A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUNDC2A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 12136831 12136831 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNDC2A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 12136850 12136850 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNDC2A 0 broad.mit.edu;ucsc.edu 37 16 12142415 12142415 + Missense_Mutation SNP T C C novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUNDC3A 10900 broad.mit.edu 37 17 42386154 42386155 + 5'UTR INS - G G novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUNDC3A 10900 hgsc.bcm.edu 37 17 42393884 42393884 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNDC3B 154661 broad.mit.edu;hgsc.bcm.edu 37 7 87436831 87436831 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNDC3B 154661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87445570 87445570 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNX1 861 hgsc.bcm.edu 37 21 36259170 36259170 + Silent SNP G G T novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RUNX1T1 862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 92982925 92982925 + Silent SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RUNX1T1 862 hgsc.bcm.edu 37 8 92972623 92972623 + Silent SNP G G T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RUNX1T1 862 hgsc.bcm.edu 37 8 92982930 92982930 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RUNX1T1 862 hgsc.bcm.edu 37 8 93004069 93004069 + Silent SNP T T G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RUNX1T1 862 hgsc.bcm.edu;ucsc.edu 37 8 93027007 93027007 + Missense_Mutation SNP C C T rs150073605 byfrequency TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID RUNX2 860 hgsc.bcm.edu 37 6 45514873 45514873 + Missense_Mutation SNP C C A rs144852234 unknown;alternate_allele TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RUNX2 860 hgsc.bcm.edu 37 6 45514873 45514873 + Missense_Mutation SNP C C A rs144852234 unknown;alternate_allele TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RUNX3 864 broad.mit.edu 37 1 25229102 25229102 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUNX3 864 broad.mit.edu;hgsc.bcm.edu 37 1 25256188 25256188 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUNX3 864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 25256117 25256117 + Silent SNP C C A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUSC1 23623 broad.mit.edu 37 1 155300500 155300500 + 3'UTR SNP A G G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RUSC1 23623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155291906 155291906 + Silent SNP C C A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUSC1 23623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155300229 155300229 + Missense_Mutation SNP G G T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUSC1 23623 hgsc.bcm.edu;ucsc.edu 37 1 155292322 155292330 + In_Frame_Del DEL ACACTGGTT ACACTGGTT - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 ACACTGGTT ACACTGGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUSC2 9853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35547730 35547730 + Silent SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUVBL1 8607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 127816145 127816145 + Silent SNP G G T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUVBL2 10856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49510383 49510383 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RUVBL2 10856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49517740 49517740 + Splice_Site SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RWDD1 51389 hgsc.bcm.edu 37 6 116892734 116892734 + 5'UTR SNP G G A rs62622856 bycluster;by1000genomes TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RWDD2A 112611 broad.mit.edu 37 6 83906084 83906084 + 3'UTR SNP C G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RWDD2A 112611 broad.mit.edu;hgsc.bcm.edu 37 6 83904158 83904158 + 5'UTR SNP A A G novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RWDD2B 10069 broad.mit.edu 37 21 30391672 30391672 + 5'UTR DEL A - - rs147928621 unknown;alternate_allele TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RWDD2B 10069 broad.mit.edu 37 21 30391672 30391674 + 5'UTR DEL AAA - - rs147928621 unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 AAA AAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RWDD2B 10069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30380357 30380357 + Silent SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RWDD4A 0 broad.mit.edu 37 4 184562425 184562425 + 3'UTR SNP G T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RWDD4A 0 broad.mit.edu 37 4 184562426 184562426 + 3'UTR SNP A T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RXFP1 59350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159549854 159549854 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RXFP3 51289 broad.mit.edu 37 5 33938339 33938339 + 3'UTR DEL G - - rs149312124 by1000genomes TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RXRA 6256 hgsc.bcm.edu 37 9 137328461 137328461 + 3'UTR SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RXRB 6257 broad.mit.edu 37 6 33168094 33168094 + Frame_Shift_Del DEL C - - novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RXRB 6257 broad.mit.edu;hgsc.bcm.edu 37 6 33163381 33163381 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RXRB 6257 broad.mit.edu;hgsc.bcm.edu 37 6 33163416 33163416 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RXRB 6257 broad.mit.edu;hgsc.bcm.edu 37 6 33163494 33163494 + Intron SNP A A T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RXRG 6258 broad.mit.edu 37 1 165414253 165414253 + 5'UTR SNP C T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RXRG 6258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 165386398 165386398 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RXRG 6258 hgsc.bcm.edu 37 1 165398156 165398156 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RYR1 6261 broad.mit.edu 37 19 38924363 38924363 + 5'UTR SNP G A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR1 6261 broad.mit.edu 37 19 38976694 38976695 + Frame_Shift_Ins INS - G G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR1 6261 broad.mit.edu;hgsc.bcm.edu 37 19 39008218 39008218 + Missense_Mutation SNP C C A rs139289204 unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38948875 38948875 + Missense_Mutation SNP A A G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38949888 38949888 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38985048 38985048 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38985140 38985140 + Silent SNP G G A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39008078 39008078 + Silent SNP G G T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39026031 39026031 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39028524 39028524 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39034251 39034251 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39038896 39038896 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39051932 39051932 + Silent SNP G G A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 hgsc.bcm.edu 37 19 38990455 38990455 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR1 6261 hgsc.bcm.edu;ucsc.edu 37 19 39002238 39002238 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RYR1 6261 hgsc.bcm.edu;ucsc.edu 37 19 39027386 39027386 + Intron SNP C C G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 broad.mit.edu 37 1 237955606 237955606 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR2 6262 broad.mit.edu;hgsc.bcm.edu 37 1 237586481 237586481 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237664189 237664189 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237791209 237791209 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237796991 237796991 + Silent SNP A A G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237886484 237886484 + Missense_Mutation SNP G G T rs183911939 by1000genomes;alternate_allele TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237895427 237895427 + Silent SNP C C A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237947421 237947421 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237947442 237947442 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237947723 237947723 + Silent SNP C C T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 hgsc.bcm.edu 37 1 237732446 237732446 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 hgsc.bcm.edu;ucsc.edu 37 1 237538046 237538046 + Silent SNP T T C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR2 6262 hgsc.bcm.edu;ucsc.edu 37 1 237664037 237664037 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RYR2 6262 hgsc.bcm.edu;ucsc.edu 37 1 237778053 237778053 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID RYR2 6262 hgsc.bcm.edu;ucsc.edu 37 1 237801753 237801753 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID RYR3 6263 broad.mit.edu 37 15 33962623 33962623 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR3 6263 broad.mit.edu 37 15 34113725 34113725 + Silent SNP T G G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR3 6263 broad.mit.edu 37 15 34119402 34119402 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33822793 33822793 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33842489 33842489 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33873752 33873752 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33873834 33873834 + Silent SNP C C T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33988670 33988670 + Silent SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34129174 34129174 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34130917 34130917 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34137144 34137144 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq RYR3 6263 broad.mit.edu;ucsc.edu 37 15 33916176 33916176 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx RYR3 6263 broad.mit.edu;ucsc.edu 37 15 34072416 34072416 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx RYR3 6263 broad.mit.edu;ucsc.edu 37 15 34118467 34118467 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx S100A10 6281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151955649 151955649 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S100A11 6282 broad.mit.edu 37 1 152005123 152005123 + 3'UTR SNP A T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx S100A12 6283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153346341 153346341 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S100A14 57402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153587436 153587436 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S100A5 6276 hgsc.bcm.edu;ucsc.edu 37 1 153509895 153509895 + Silent SNP G G A rs3795395 bycluster;byfrequency;by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S100A7A 338324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153391770 153391770 + Silent SNP T T C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S100PBP 64766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33292267 33292267 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S1PR1 1901 broad.mit.edu 37 1 101705772 101705772 + 3'UTR SNP C T T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx S1PR2 9294 broad.mit.edu 37 19 10335160 10335160 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx S1PR2 9294 broad.mit.edu;hgsc.bcm.edu 37 19 10334693 10334693 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S1PR3 1903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 91616543 91616543 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq S1PR3 1903 broad.mit.edu;ucsc.edu 37 9 91616249 91616249 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx S1PR3 1903 hgsc.bcm.edu;ucsc.edu 37 9 91617209 91617209 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID S1PR4 8698 broad.mit.edu 37 19 3179916 3179916 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx S1PR4 8698 broad.mit.edu 37 19 3179921 3179921 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx S1PR4 8698 hgsc.bcm.edu 37 19 3179874 3179874 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAA1 6288 hgsc.bcm.edu;ucsc.edu 37 11 18288477 18288477 + Missense_Mutation SNP G G A rs712021 byfrequency TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAA1 6288 hgsc.bcm.edu;ucsc.edu 37 11 18291358 18291358 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAAL1 113174 hgsc.bcm.edu 37 11 18127558 18127559 + In_Frame_Ins INS - - CGG novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAAL1 113174 hgsc.bcm.edu 37 11 18127558 18127559 + In_Frame_Ins INS - - CGG novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAAL1 113174 hgsc.bcm.edu 37 11 18127558 18127559 + In_Frame_Ins INS - - CGG novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23904812 23904812 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23907922 23907922 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23909182 23909182 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23914058 23914058 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23914059 23914059 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23915483 23915483 + Silent SNP T T G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 hgsc.bcm.edu;ucsc.edu 37 13 23906942 23906942 + Silent SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SACS 26278 hgsc.bcm.edu;ucsc.edu 37 13 23912564 23912564 + Silent SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAE1 10055 hgsc.bcm.edu 37 19 47646781 47646782 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAFB2 9667 broad.mit.edu;ucsc.edu 37 19 5613494 5613494 + Silent SNP C T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAFB2 9667 hgsc.bcm.edu;ucsc.edu 37 19 5621374 5621374 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAFB 6294 broad.mit.edu 37 19 5648215 5648215 + Intron SNP A C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAFB 6294 broad.mit.edu 37 19 5648215 5648215 + Intron SNP A C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAFB 6294 broad.mit.edu 37 19 5668381 5668381 + 3'UTR DEL T - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAFB 6294 broad.mit.edu 37 19 5668445 5668445 + 3'UTR DEL T - - novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAFB 6294 broad.mit.edu 37 19 5668445 5668445 + 3'UTR DEL T - - novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAG 6295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234235795 234235795 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAG 6295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234237149 234237149 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAG 6295 hgsc.bcm.edu 37 2 234240287 234240287 + Silent SNP G G A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAGE1 55511 hgsc.bcm.edu;ucsc.edu 37 X 134991924 134991924 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAGE1 55511 hgsc.bcm.edu;ucsc.edu 37 X 134992605 134992605 + Silent SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SALL1 6299 broad.mit.edu;hgsc.bcm.edu 37 16 51170989 51170989 + 3'UTR SNP A A G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 51171323 51171323 + Silent SNP T T C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 51173119 51173119 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 51173795 51173795 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 51174807 51174807 + Silent SNP G G C rs143605364 unknown;alternate_allele TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 broad.mit.edu;ucsc.edu 37 16 51173118 51173118 + Missense_Mutation SNP A C C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SALL1 6299 hgsc.bcm.edu 37 16 51171109 51171109 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SALL1 6299 hgsc.bcm.edu 37 16 51174659 51174659 + Silent SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SALL1 6299 hgsc.bcm.edu 37 16 51174659 51174659 + Silent SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SALL1 6299 hgsc.bcm.edu 37 16 51175664 51175664 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 hgsc.bcm.edu;ucsc.edu 37 16 51172715 51172716 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL1 6299 hgsc.bcm.edu;ucsc.edu 37 16 51172834 51172834 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SALL1 6299 hgsc.bcm.edu;ucsc.edu 37 16 51175662 51175662 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL2 6297 broad.mit.edu 37 14 21992408 21992408 + Missense_Mutation SNP C A A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SALL3 27164 broad.mit.edu 37 18 76752286 76752286 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SALL3 27164 broad.mit.edu 37 18 76753526 76753526 + Nonsense_Mutation SNP G A A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SALL3 27164 broad.mit.edu;ucsc.edu 37 18 76753965 76753965 + Silent SNP G A A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SALL3 27164 hgsc.bcm.edu 37 18 76752151 76752151 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL4 57167 broad.mit.edu 37 20 50400592 50400593 + 3'UTR INS - T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SALL4 57167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 50406800 50406800 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL4 57167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 50407915 50407915 + Silent SNP C C A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SALL4 57167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 50408862 50408862 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD10 140700 broad.mit.edu 37 20 62607109 62607109 + Silent SNP C T T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAMD11 148398 broad.mit.edu 37 1 878409 878409 + Missense_Mutation SNP C T T rs181205550 by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAMD12 401474 hgsc.bcm.edu;ucsc.edu 37 8 119452167 119452167 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD13 148418 hgsc.bcm.edu 37 1 84764310 84764310 + Intron SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD14 201191 broad.mit.edu 37 17 48191586 48191586 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAMD14 201191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48191587 48191587 + Silent SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD14 201191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48191795 48191795 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD14 201191 broad.mit.edu;ucsc.edu 37 17 48195543 48195543 + Silent SNP C T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAMD15 161394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77844922 77844922 + Silent SNP C C T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD15 161394 hgsc.bcm.edu;ucsc.edu 37 14 77843971 77843971 + Silent SNP C C T rs45540040 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD15 161394 hgsc.bcm.edu;ucsc.edu 37 14 77844265 77844265 + Missense_Mutation SNP G G A rs45527334 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD3 154075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 130465867 130465867 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD3 154075 hgsc.bcm.edu;ucsc.edu 37 6 130505739 130505739 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD4A 23034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55203899 55203899 + Silent SNP G G A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD4A 23034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55218223 55218223 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD5 389432 broad.mit.edu 37 6 147830411 147830411 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAMD5 389432 hgsc.bcm.edu 37 6 147830070 147830070 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD7 344658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 169644942 169644942 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD8 142891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 76928376 76928376 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD9 54809 broad.mit.edu 37 7 92730525 92730525 + 3'UTR SNP G C C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAMD9 54809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92731889 92731889 + Silent SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD9 54809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92732506 92732506 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD9 54809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92733297 92733297 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD9 54809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92734661 92734661 + Silent SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD9 54809 hgsc.bcm.edu;ucsc.edu 37 7 92735216 92735216 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMD9L 219285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92763473 92763473 + Silent SNP T T C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMD9L 219285 hgsc.bcm.edu 37 7 92761054 92761054 + Missense_Mutation SNP G G C rs4729075 unknown;alternate_allele TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMHD1 25939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 35547877 35547877 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMHD1 25939 hgsc.bcm.edu;ucsc.edu 37 20 35547821 35547821 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAMHD1 25939 hgsc.bcm.edu;ucsc.edu 37 20 35563478 35563478 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAMM50 25813 hgsc.bcm.edu;ucsc.edu 37 22 44386258 44386258 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAP130 79595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128757928 128757928 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAP130 79595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128757929 128757929 + Silent SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAP130 79595 hgsc.bcm.edu 37 2 128707901 128707901 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAP130 79595 hgsc.bcm.edu 37 2 128744480 128744480 + Missense_Mutation SNP T T C rs72841716 bycluster;byfrequency;by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAP130 79595 hgsc.bcm.edu 37 2 128775310 128775310 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAP130 79595 hgsc.bcm.edu 37 2 128775373 128775373 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAP18 10284 broad.mit.edu 37 13 21714654 21714654 + 5'UTR DEL A - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAP30 8819 broad.mit.edu 37 4 174298500 174298500 + 3'UTR SNP T A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAP30 8819 hgsc.bcm.edu 37 4 174292632 174292632 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAPS3 0 broad.mit.edu 37 11 68355147 68355148 + Intron INS - AG AG novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAR1A 56681 broad.mit.edu 37 10 71912161 71912161 + 3'UTR SNP A G G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAR1B 51128 broad.mit.edu;hgsc.bcm.edu 37 5 133944073 133944073 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAR1B 51128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 133948437 133948437 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SARDH 1757 broad.mit.edu 37 9 136577831 136577831 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SARDH 1757 broad.mit.edu;ucsc.edu 37 9 136578237 136578237 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SARM1 23098 broad.mit.edu;ucsc.edu 37 17 26686415 26686415 + Silent SNP C T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SARNP 84324 hgsc.bcm.edu;ucsc.edu 37 12 56194628 56194628 + RNA SNP T T A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SARS2 54938 broad.mit.edu 37 19 39412767 39412767 + Intron SNP C T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SARS 6301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109772058 109772058 + Missense_Mutation SNP A A G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SARS 6301 hgsc.bcm.edu;ucsc.edu 37 1 109771043 109771043 + Missense_Mutation SNP G G A rs145938975 unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SARS 6301 hgsc.bcm.edu;ucsc.edu 37 1 109773533 109773533 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SART3 9733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108920274 108920274 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SART3 9733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108929135 108929136 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SART3 9733 hgsc.bcm.edu;ucsc.edu 37 12 108929189 108929189 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SART3 9733 hgsc.bcm.edu;ucsc.edu 37 12 108931344 108931344 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SART3 9733 hgsc.bcm.edu;ucsc.edu 37 12 108941708 108941708 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SASH1 23328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 148853944 148853944 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SASS6 163786 broad.mit.edu 37 1 100550616 100550617 + 3'UTR DEL AG - - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SASS6 163786 broad.mit.edu 37 1 100550761 100550761 + 3'UTR SNP C G G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SASS6 163786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100571393 100571393 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SASS6 163786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100572485 100572485 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SASS6 163786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100575995 100575995 + Silent SNP A A G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAT1 6303 broad.mit.edu 37 X 23801393 23801393 + 5'UTR SNP G A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SAT1 6303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23803813 23803813 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAT1 6303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23803814 23803814 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SAT2 112483 hgsc.bcm.edu 37 17 7529914 7529914 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SATB2 23314 broad.mit.edu;hgsc.bcm.edu 37 2 200193631 200193631 + Silent SNP T T A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SATB2 23314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 200213434 200213434 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SATB2 23314 broad.mit.edu;ucsc.edu 37 2 200245089 200245089 + Nonsense_Mutation SNP G A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SATB2 23314 hgsc.bcm.edu 37 2 200193590 200193590 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SATB2 23314 hgsc.bcm.edu 37 2 200298058 200298058 + Splice_Region SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SAV1 60485 broad.mit.edu 37 14 51131954 51131954 + Nonsense_Mutation SNP C A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBDS 51119 broad.mit.edu 37 7 66453154 66453154 + 3'UTR SNP G A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBDS 51119 broad.mit.edu 37 7 66453155 66453155 + 3'UTR SNP A T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBDS 51119 broad.mit.edu 37 7 66453159 66453159 + 3'UTR SNP A G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBDS 51119 hgsc.bcm.edu;ucsc.edu 37 7 66453385 66453385 + Silent SNP T T C novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBDSP1 155370 broad.mit.edu 37 7 72307377 72307377 + RNA SNP C G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBF1 6305 broad.mit.edu 37 22 50885210 50885210 + 3'UTR SNP A G G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBF1 6305 broad.mit.edu;hgsc.bcm.edu 37 22 50903272 50903272 + Silent SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBF1 6305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50893063 50893063 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBF1 6305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50893343 50893343 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBF1 6305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50903133 50903133 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBF1 6305 hgsc.bcm.edu 37 22 50904777 50904777 + Splice_Site SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SBF2 81846 broad.mit.edu 37 11 9980659 9980659 + Intron SNP G T T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBF2 81846 broad.mit.edu 37 11 9983423 9983423 + Intron SNP A G G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBF2 81846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9868520 9868520 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBF2 81846 hgsc.bcm.edu 37 11 9829597 9829597 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SBF2 81846 hgsc.bcm.edu 37 11 9875241 9875241 + Silent SNP A A C novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBK1 388228 broad.mit.edu 37 16 28331871 28331871 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBNO1 55206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123800154 123800154 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SBNO1 55206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123812074 123812074 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBNO1 55206 hgsc.bcm.edu;ucsc.edu 37 12 123794374 123794377 + Frame_Shift_Del DEL TATT TATT - novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 TATT TATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBNO2 22904 broad.mit.edu;hgsc.bcm.edu 37 19 1112193 1112193 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBNO2 22904 hgsc.bcm.edu 37 19 1109215 1109215 + Intron SNP G G A rs11669443 bycluster;byfrequency;byhapmap;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBSN 374897 broad.mit.edu 37 19 36014289 36014289 + 3'UTR SNP C T T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SBSN 374897 hgsc.bcm.edu 37 19 36018413 36018413 + Silent SNP T T A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SBSN 374897 hgsc.bcm.edu 37 19 36018434 36018434 + Silent SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SC4MOL 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 166254730 166254730 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SC5DL 6309 broad.mit.edu 37 11 121177308 121177308 + Intron SNP G T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SC5DL 6309 broad.mit.edu 37 11 121177308 121177308 + Intron SNP G T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SC5DL 6309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 121175086 121175086 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAF1 58506 broad.mit.edu 37 19 50154204 50154204 + Silent SNP A C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAF1 58506 hgsc.bcm.edu 37 19 50154270 50154271 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAF1 58506 hgsc.bcm.edu 37 19 50154270 50154271 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAF1 58506 hgsc.bcm.edu 37 19 50154291 50154294 + Frame_Shift_Del DEL TGCA TGCA - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TGCA TGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAF1 58506 hgsc.bcm.edu 37 19 50154294 50154295 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAI 286205 broad.mit.edu;hgsc.bcm.edu 37 9 127789180 127789180 + Silent SNP T T G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAI 286205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 127733961 127733961 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAI 286205 hgsc.bcm.edu;ucsc.edu 37 9 127789090 127789090 + Splice_Site SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCAMP2 10066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75142952 75142952 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAMP2 10066 hgsc.bcm.edu 37 15 75143007 75143007 + Silent SNP T T G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCAMP3 10067 broad.mit.edu 37 1 155225979 155225979 + 3'UTR SNP A G G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAMP3 10067 broad.mit.edu 37 1 155232153 155232153 + 5'UTR DEL C - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAMP5 192683 broad.mit.edu 37 15 75311376 75311376 + 3'UTR SNP C A A rs182057491 unknown;alternate_allele TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAMP5 192683 broad.mit.edu 37 15 75311458 75311459 + 3'UTR INS - TA TA rs138820484 by1000genomes TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAND3 114821 broad.mit.edu 37 6 28554609 28554610 + 5'UTR DEL AC - - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAND3 114821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28543685 28543685 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAND3 114821 broad.mit.edu;ucsc.edu 37 6 28542935 28542935 + Missense_Mutation SNP T A A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAND3 114821 hgsc.bcm.edu 37 6 28543057 28543057 + Silent SNP T T C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCAND3 114821 hgsc.bcm.edu 37 6 28543264 28543264 + Silent SNP C C T rs17336532 bycluster;byfrequency TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCAND3 114821 hgsc.bcm.edu 37 6 28543264 28543264 + Silent SNP C C T rs17336532 bycluster;byfrequency TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCAP 22937 broad.mit.edu 37 3 47461081 47461099 + Frame_Shift_Del DEL AGCCAGGGCTCCCTCACCC - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 AGCCAGGGCTCCCTCACCC AGCCAGGGCTCCCTCACCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAP 22937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47455554 47455554 + Silent SNP T T A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAPER 49855 broad.mit.edu 37 15 76673074 76673074 + Intron DEL A - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCAPER 49855 broad.mit.edu;hgsc.bcm.edu 37 15 76994175 76994175 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAPER 49855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77059317 77059317 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCAPER 49855 hgsc.bcm.edu;ucsc.edu 37 15 77096926 77096926 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARA5 286133 hgsc.bcm.edu 37 8 27779093 27779093 + Missense_Mutation SNP G G A rs118119884 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARB1 949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125267275 125267275 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCARB1 949 hgsc.bcm.edu;ucsc.edu 37 12 125279747 125279747 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARB2 950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77082897 77082897 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCARB2 950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77084506 77084506 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCARB2 950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77100845 77100845 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCARB2 950 hgsc.bcm.edu;ucsc.edu 37 4 77095296 77095296 + Splice_Site SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARF1 8578 broad.mit.edu 37 17 1540047 1540047 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCARF1 8578 hgsc.bcm.edu 37 17 1538815 1538815 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARF2 91179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 20783904 20783904 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCARNA2 677766 broad.mit.edu;hgsc.bcm.edu 37 1 109642843 109642843 + RNA SNP C C A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCARNA8 677776 hgsc.bcm.edu 37 9 19063108 19063108 + 3'Promoter SNP T T C rs61740790 byfrequency TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARNA8 677776 hgsc.bcm.edu 37 9 19063108 19063108 + 3'Promoter SNP T T C rs61740790 byfrequency TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCARNA9 619383 broad.mit.edu;hgsc.bcm.edu 37 11 93454688 93454688 + RNA SNP G G C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCCPDH 51097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246923346 246923346 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCD5 79966 broad.mit.edu 37 4 83552278 83552279 + 3'UTR INS - A A rs35490627 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCD5 79966 broad.mit.edu 37 4 83552279 83552279 + 3'UTR DEL A - - rs35490627 unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCD5 79966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83719576 83719576 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCD5 79966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83719638 83719638 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCD 6319 broad.mit.edu 37 10 102122879 102122879 + 3'UTR DEL G - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCEL 8796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 78130015 78130015 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCFD1 23256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31122776 31122776 + Silent SNP A A T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCFD1 23256 hgsc.bcm.edu;ucsc.edu 37 14 31171516 31171516 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCFD2 152579 broad.mit.edu 37 4 53823332 53823332 + Intron DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCFD2 152579 hgsc.bcm.edu;ucsc.edu 37 4 53752026 53752026 + Missense_Mutation SNP C C A rs141706393 unknown;alternate_allele TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCG2 7857 broad.mit.edu;hgsc.bcm.edu 37 2 224462129 224462129 + 3'UTR SNP G G C novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCG2 7857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 224462769 224462769 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCG2 7857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 224463043 224463043 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCG2 7857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 224463615 224463615 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCG2 7857 hgsc.bcm.edu;ucsc.edu 37 2 224463149 224463149 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCG3 29106 hgsc.bcm.edu 37 15 51975597 51975597 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCG3 29106 hgsc.bcm.edu 37 15 51993432 51993432 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCGB1A1 7356 broad.mit.edu 37 11 62190622 62190622 + 3'UTR SNP C A A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCGN 10590 broad.mit.edu;hgsc.bcm.edu 37 6 25670266 25670266 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCIN 85477 hgsc.bcm.edu;ucsc.edu 37 7 12620697 12620697 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCIN 85477 hgsc.bcm.edu;ucsc.edu 37 7 12662523 12662523 + Intron SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCLT1 132320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129812271 129812271 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCLY 51540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238999918 238999918 + Intron SNP A A T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCMH1 22955 broad.mit.edu;hgsc.bcm.edu 37 1 41579130 41579130 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCMH1 22955 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41608634 41608634 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCML1 6322 broad.mit.edu 37 X 17763603 17763603 + Nonsense_Mutation SNP G T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCML1 6322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17762279 17762279 + 5'UTR SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCML1 6322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17768309 17768309 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCML4 256380 broad.mit.edu 37 6 108093542 108093542 + 5'UTR SNP G C C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCN10A 6336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38783881 38783881 + Silent SNP G G T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN10A 6336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38797338 38797338 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN10A 6336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38798548 38798548 + Silent SNP G G T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN10A 6336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38802744 38802744 + Silent SNP A A G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN10A 6336 hgsc.bcm.edu;ucsc.edu 37 3 38797358 38797358 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN10A 6336 hgsc.bcm.edu;ucsc.edu 37 3 38798643 38798643 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN11A 11280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38888542 38888542 + Silent SNP G G T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN11A 11280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38962724 38962724 + Silent SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN1A 6323 broad.mit.edu 37 2 166930140 166930140 + 5'UTR SNP C T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCN1A 6323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166870294 166870294 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN1A 6323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166898839 166898839 + Silent SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN1A 6323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166909391 166909391 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN1A 6323 hgsc.bcm.edu;ucsc.edu 37 2 166847875 166847875 + Silent SNP T T C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN1A 6323 hgsc.bcm.edu;ucsc.edu 37 2 166848925 166848925 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN2A 6326 broad.mit.edu;hgsc.bcm.edu 37 2 166201197 166201197 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN2A 6326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166170262 166170262 + Silent SNP T T G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN2A 6326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166183424 166183424 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN2A 6326 hgsc.bcm.edu;ucsc.edu 37 2 166152464 166152464 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN3A 6328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 165948825 165948825 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN3A 6328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 165952091 165952091 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN3A 6328 broad.mit.edu;ucsc.edu 37 2 165946947 165946947 + Missense_Mutation SNP T C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCN3A 6328 hgsc.bcm.edu;ucsc.edu 37 2 165953810 165953810 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID SCN3B 55800 hgsc.bcm.edu 37 11 123513374 123513374 + Silent SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN4A 6329 broad.mit.edu;hgsc.bcm.edu 37 17 62029159 62029159 + Silent SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN4A 6329 hgsc.bcm.edu 37 17 62024487 62024487 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN4A 6329 hgsc.bcm.edu;ucsc.edu 37 17 62018757 62018757 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN5A 6331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38622777 38622777 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN5A 6331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38647616 38647616 + Silent SNP G G T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN7A 6332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167328884 167328884 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN7A 6332 broad.mit.edu;ucsc.edu 37 2 167289087 167289087 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCN7A 6332 hgsc.bcm.edu;ucsc.edu 37 2 167262931 167262931 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN8A 6334 hgsc.bcm.edu 37 12 52162982 52162982 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCN9A 6335 broad.mit.edu 37 2 167054934 167054935 + 3'UTR INS - AATC AATC novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCN9A 6335 broad.mit.edu 37 2 167160593 167160593 + Intron SNP T A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCN9A 6335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167055543 167055543 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G G T G G Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq SCN9A 6335 hgsc.bcm.edu;ucsc.edu 37 2 167055463 167055463 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN9A 6335 hgsc.bcm.edu;ucsc.edu 37 2 167060645 167060645 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCN9A 6335 hgsc.bcm.edu;ucsc.edu 37 2 167137006 167137006 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCNM1 79005 broad.mit.edu 37 1 151138557 151138557 + 5'UTR SNP C T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCNM1 79005 broad.mit.edu 37 1 151138591 151138591 + 5'UTR SNP G A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCNN1A 6337 broad.mit.edu 37 12 6456271 6456272 + 3'UTR DEL CA - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCNN1A 6337 broad.mit.edu;hgsc.bcm.edu 37 12 6463640 6463640 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCNN1A 6337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6457292 6457292 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCNN1B 6338 broad.mit.edu 37 16 23360188 23360188 + Missense_Mutation SNP A G G rs150466803 unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCNN1B 6338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 23359975 23359975 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCNN1G 6340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 23203706 23203706 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCO1 6341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10596183 10596183 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCOC 60592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 141302257 141302257 + Silent SNP A A G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCP2 6342 broad.mit.edu 37 1 53460611 53460611 + Intron SNP A T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCP2 6342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53516318 53516318 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCP2 6342 hgsc.bcm.edu;ucsc.edu 37 1 53453708 53453708 + Silent SNP T T G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCP2 6342 hgsc.bcm.edu;ucsc.edu 37 1 53480709 53480709 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCPEP1 59342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 55058513 55058513 + Silent SNP C C G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCPEP1 59342 hgsc.bcm.edu;ucsc.edu 37 17 55062835 55062835 + Splice_Region SNP T T G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCPEP1 59342 hgsc.bcm.edu;ucsc.edu 37 17 55072362 55072362 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCRIB 23513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144874929 144874929 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCRIB 23513 hgsc.bcm.edu 37 8 144877654 144877654 + Missense_Mutation SNP T T G rs148494356 bycluster;byfrequency;by1000genomes TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCRIB 23513 hgsc.bcm.edu;ucsc.edu 37 8 144877694 144877694 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCRN1 9805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 29963599 29963599 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCRN1 9805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 29980329 29980330 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCRN1 9805 hgsc.bcm.edu;ucsc.edu 37 7 29994903 29994903 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCRN2 90507 broad.mit.edu;ucsc.edu 37 17 45918176 45918176 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCRN3 79634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 175289230 175289230 + Silent SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCRN3 79634 hgsc.bcm.edu 37 2 175292581 175292593 + Frame_Shift_Del DEL TCAAATTTATCAG TCAAATTTATCAG - rs145699077 bycluster;by1000genomes TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 TCAAATTTATCAG TCAAATTTATCAG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCRT2 85508 broad.mit.edu 37 20 656174 656174 + Silent SNP G A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCTR 6344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120204412 120204412 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCTR 6344 hgsc.bcm.edu;ucsc.edu 37 2 120221705 120221705 + Silent SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCUBE1 80274 broad.mit.edu 37 22 43599960 43599960 + 3'UTR SNP C T T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCUBE1 80274 broad.mit.edu;hgsc.bcm.edu 37 22 43614319 43614319 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCUBE1 80274 broad.mit.edu;hgsc.bcm.edu 37 22 43625097 43625097 + Silent SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCUBE2 57758 broad.mit.edu 37 11 9041982 9041982 + 3'UTR DEL T - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCUBE2 57758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9091015 9091015 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCUBE2 57758 broad.mit.edu;ucsc.edu 37 11 9048918 9048918 + Silent SNP C A A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCUBE3 222663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35212548 35212548 + Silent SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCUBE3 222663 hgsc.bcm.edu 37 6 35210009 35210009 + Silent SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCYL1 57410 hgsc.bcm.edu 37 11 65303520 65303520 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SCYL2 55681 broad.mit.edu 37 12 100733089 100733089 + 3'UTR SNP G A A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SCYL2 55681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100704845 100704845 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCYL2 55681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100732421 100732421 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCYL3 57147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169833584 169833584 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SCYL3 57147 hgsc.bcm.edu;ucsc.edu 37 1 169831811 169831811 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDAD1 55153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 76897076 76897076 + Splice_Site SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDAD1 55153 hgsc.bcm.edu;ucsc.edu 37 4 76878693 76878693 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDAD1 55153 hgsc.bcm.edu;ucsc.edu 37 4 76882361 76882361 + Intron SNP T T C novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDAD1 55153 hgsc.bcm.edu;ucsc.edu 37 4 76898846 76898846 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDC1 6382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20403634 20403634 + Silent SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDC1 6382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20403727 20403727 + Silent SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDC1 6382 hgsc.bcm.edu;ucsc.edu 37 2 20402566 20402566 + Silent SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDC2 6383 broad.mit.edu;hgsc.bcm.edu 37 8 97621837 97621837 + 3'UTR SNP A A C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDC2 6383 hgsc.bcm.edu 37 8 97621610 97621610 + Intron SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDC3 9672 hgsc.bcm.edu;ucsc.edu 37 1 31347255 31347255 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDCBP 6386 broad.mit.edu 37 8 59494739 59494739 + 3'UTR DEL T - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDCBP 6386 hgsc.bcm.edu 37 8 59490730 59490730 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDCCAG1 0 broad.mit.edu;ucsc.edu 37 14 50298067 50298067 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDCCAG1 0 hgsc.bcm.edu;ucsc.edu 37 14 50312885 50312885 + Nonsense_Mutation SNP G G C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDCCAG3 10807 hgsc.bcm.edu 37 9 139297266 139297266 + Missense_Mutation SNP C C T rs17855450 bycluster;by1000genomes TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDCCAG8 10806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 243581274 243581274 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDCCAG8 10806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 243581287 243581287 + Silent SNP T T C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDCCAG8 10806 hgsc.bcm.edu;ucsc.edu 37 1 243480195 243480195 + Silent SNP G G A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDF2 6388 broad.mit.edu 37 17 26975938 26975938 + 3'UTR SNP A G G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDF4 51150 broad.mit.edu 37 1 1158534 1158535 + Intron INS - AC AC novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDF4 51150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1153053 1153053 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDHA 6389 broad.mit.edu 37 5 218381 218382 + 5'UTR INS - C C rs3214561 unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 218381 218382 + 5'UTR INS - C C rs3214561 unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 251704 251704 + Intron DEL G - - rs111797600 unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256578 256578 + 3'UTR SNP T C C rs150891426 unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256578 256578 + 3'UTR SNP T C C rs150891426 unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256592 256592 + 3'UTR SNP T C C rs113703363 unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256592 256592 + 3'UTR SNP T C C rs113703363 unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256624 256624 + 3'UTR SNP G A A rs79810985 bycluster TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256624 256624 + 3'UTR SNP G A A rs79810985 bycluster TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu 37 5 256624 256624 + 3'UTR SNP G A A rs79810985 bycluster TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHA 6389 broad.mit.edu;hgsc.bcm.edu 37 5 233767 233767 + Intron SNP G G A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDHA 6389 hgsc.bcm.edu 37 5 236653 236653 + Silent SNP C C A rs75091805 bycluster;byfrequency TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDHA 6389 hgsc.bcm.edu;ucsc.edu 37 5 236649 236649 + Missense_Mutation SNP C C T rs76896145 bycluster;byfrequency TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDHAP1 255812 broad.mit.edu 37 3 195692311 195692311 + Missense_Mutation SNP T C C rs62282793 byfrequency;by1000genomes TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP1 255812 broad.mit.edu 37 3 195692347 195692347 + Missense_Mutation SNP G A A rs62282794 bycluster TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP1 255812 broad.mit.edu 37 3 195698264 195698264 + RNA SNP T C C rs52815337 bycluster TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP1 255812 broad.mit.edu 37 3 195701417 195701417 + Silent SNP G C C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP1 255812 broad.mit.edu 37 3 195711423 195711423 + Intron SNP A G G rs2688559 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP2 727956 broad.mit.edu 37 3 195395394 195395394 + 5'UTR SNP C A A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP2 727956 broad.mit.edu 37 3 195398271 195398271 + Intron SNP A G G rs4927673 unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP2 727956 broad.mit.edu 37 3 195400728 195400728 + Silent SNP A G G rs77981248 unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP2 727956 broad.mit.edu 37 3 195400728 195400728 + Silent SNP A G G rs77981248 unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP2 727956 broad.mit.edu 37 3 195410627 195410627 + Missense_Mutation SNP A G G rs6583272 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP2 727956 broad.mit.edu 37 3 195410687 195410687 + Missense_Mutation SNP T A A rs6583274 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP3 728609 broad.mit.edu 37 5 1572205 1572205 + Intron SNP T C C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP3 728609 broad.mit.edu 37 5 1572231 1572231 + Intron SNP G A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP3 728609 broad.mit.edu 37 5 1572243 1572243 + Intron SNP C T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP3 728609 broad.mit.edu 37 5 1572275 1572275 + Intron SNP A G G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP3 728609 broad.mit.edu 37 5 1572275 1572275 + Intron SNP A G G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHAP3 728609 broad.mit.edu 37 5 1574406 1574406 + RNA SNP T C C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHB 6390 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17350478 17350478 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDHD 6392 broad.mit.edu 37 11 111965721 111965721 + 3'UTR SNP T C C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965721 111965721 + 3'UTR SNP T C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965721 111965721 + 3'UTR SNP T C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965721 111965721 + 3'UTR SNP T C C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965721 111965721 + 3'UTR SNP T C C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965729 111965729 + 3'UTR SNP T A A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965729 111965729 + 3'UTR SNP T A A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965729 111965729 + 3'UTR SNP T A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu 37 11 111965729 111965729 + 3'UTR SNP T A A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDHD 6392 broad.mit.edu;hgsc.bcm.edu 37 11 111959648 111959648 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 broad.mit.edu;hgsc.bcm.edu 37 7 4011189 4011189 + Silent SNP G G T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4014046 4014046 + Silent SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4152925 4152925 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4218194 4218194 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 broad.mit.edu;ucsc.edu 37 7 4169711 4169711 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDK1 221935 broad.mit.edu;ucsc.edu 37 7 4198097 4198097 + Missense_Mutation SNP C A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDK1 221935 hgsc.bcm.edu 37 7 4007044 4007045 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 hgsc.bcm.edu 37 7 4007044 4007045 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK1 221935 hgsc.bcm.edu;ucsc.edu 37 7 3678698 3678698 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDK1 221935 hgsc.bcm.edu;ucsc.edu 37 7 4218135 4218135 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDK2 54549 broad.mit.edu 37 17 71333645 71333646 + 3'UTR INS - GC GC novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDK2 54549 broad.mit.edu 37 17 71429919 71429919 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDK2 54549 broad.mit.edu;hgsc.bcm.edu 37 17 71344797 71344797 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71357832 71357832 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71415436 71415436 + Silent SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71420174 71420174 + Silent SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71429905 71429905 + Silent SNP C C T rs142980422 by1000genomes TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDK2 54549 hgsc.bcm.edu 37 17 71361527 71361527 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDK2 54549 hgsc.bcm.edu 37 17 71418510 71418510 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDK2 54549 hgsc.bcm.edu 37 17 71429894 71429894 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDR16C5 195814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57219234 57219234 + Splice_Site SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SDR16C5 195814 broad.mit.edu;ucsc.edu 37 8 57214061 57214061 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDR16C5 195814 broad.mit.edu;ucsc.edu 37 8 57228627 57228627 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDR39U1 56948 broad.mit.edu 37 14 24911166 24911166 + Intron SNP T G G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SDR39U1 56948 hgsc.bcm.edu 37 14 24911922 24911922 + Intron SNP A A T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDR9C7 121214 hgsc.bcm.edu 37 12 57323228 57323228 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SDSL 113675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113865886 113865886 + Silent SNP T T A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC11A 23478 broad.mit.edu;ucsc.edu 37 15 85230906 85230906 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu 37 17 75205129 75205130 + Intron DEL TA - - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu 37 17 75205361 75205361 + Intron SNP G A A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu 37 17 75209464 75209464 + Silent SNP C T T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu 37 17 75209703 75209704 + Intron INS - A A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu 37 17 75212337 75212337 + 3'UTR SNP T C C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu 37 17 75212424 75212424 + 3'UTR SNP T C C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L1 6397 broad.mit.edu;hgsc.bcm.edu 37 17 75205364 75205364 + Intron SNP T T A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L1 6397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 75209495 75209495 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L2 23541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30805428 30805428 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L3 266629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30856107 30856107 + Silent SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L3 266629 hgsc.bcm.edu;ucsc.edu 37 22 30866555 30866555 + Silent SNP G G T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC14L4 284904 broad.mit.edu;hgsc.bcm.edu 37 22 30886259 30886259 + Intron SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L4 284904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30885908 30885908 + 3'UTR SNP G G T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L4 284904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30885909 30885909 + 3'UTR SNP G G T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L4 284904 hgsc.bcm.edu;ucsc.edu 37 22 30888522 30888522 + Silent SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC14L4 284904 hgsc.bcm.edu;ucsc.edu 37 22 30891967 30891967 + Intron SNP A A T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC14L5 9717 broad.mit.edu 37 16 5050877 5050877 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC14L5 9717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 5040871 5040871 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16A 9919 broad.mit.edu;hgsc.bcm.edu 37 9 139370322 139370322 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16A 9919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139360547 139360547 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16A 9919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139369264 139369264 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16A 9919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139369367 139369367 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16A 9919 hgsc.bcm.edu 37 9 139370955 139370963 + In_Frame_Del DEL AGCTCCTGA AGCTCCTGA - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 AGCTCCTGA AGCTCCTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16A 9919 hgsc.bcm.edu;ucsc.edu 37 9 139369004 139369006 + In_Frame_Del DEL TTT TTT - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 TTT TTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16B 89866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177906454 177906454 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC16B 89866 hgsc.bcm.edu 37 1 177927420 177927420 + Silent SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC22A 26984 broad.mit.edu 37 3 122927849 122927849 + Intron DEL C - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22A 26984 broad.mit.edu 37 3 122927986 122927986 + Intron SNP A C C novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22B 9554 broad.mit.edu 37 1 145116104 145116104 + 3'UTR SNP T C C novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22B 9554 broad.mit.edu 37 1 145116147 145116148 + 3'UTR INS - A A rs113058116 unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22B 9554 broad.mit.edu 37 1 145116147 145116148 + 3'UTR INS - A A rs113058116 unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22B 9554 broad.mit.edu 37 1 145116193 145116193 + 3'UTR DEL G - - rs148634949 unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22B 9554 broad.mit.edu 37 1 145116193 145116193 + 3'UTR DEL G - - rs148634949 unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC22B 9554 broad.mit.edu 37 1 145116403 145116403 + 3'UTR DEL T - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC23A 10484 broad.mit.edu;hgsc.bcm.edu 37 14 39511999 39511999 + Nonsense_Mutation SNP A A C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC23A 10484 hgsc.bcm.edu;ucsc.edu 37 14 39502467 39502467 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC23A 10484 hgsc.bcm.edu;ucsc.edu 37 14 39555078 39555078 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC23B 10483 hgsc.bcm.edu;ucsc.edu 37 20 18492907 18492908 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC23IP 11196 broad.mit.edu 37 10 121680583 121680583 + Intron SNP G A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC23IP 11196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 121657969 121657969 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC23IP 11196 hgsc.bcm.edu;ucsc.edu 37 10 121658082 121658082 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC24A 10802 broad.mit.edu 37 5 133984646 133984646 + 5'UTR DEL T - - rs61421945 unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC24A 10802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 133996855 133996855 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC24A 10802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134002663 134002663 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC24A 10802 hgsc.bcm.edu;ucsc.edu 37 5 134033690 134033690 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC24B 10427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 110402835 110402835 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC24C 9632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75520019 75520019 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC24C 9632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75520026 75520026 + Silent SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC24D 9871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 119718966 119718966 + Splice_Site SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC24D 9871 hgsc.bcm.edu;ucsc.edu 37 4 119736750 119736750 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEC31A 22872 broad.mit.edu;hgsc.bcm.edu 37 4 83788105 83788105 + Silent SNP T T C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC31A 22872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83770070 83770070 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC31A 22872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83788377 83788377 + Silent SNP A A G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC31A 22872 hgsc.bcm.edu;ucsc.edu 37 4 83800058 83800058 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC31B 25956 broad.mit.edu 37 10 102265353 102265353 + Intron SNP T A A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEC31B 25956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102249094 102249094 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC31B 25956 hgsc.bcm.edu;ucsc.edu 37 10 102257182 102257182 + Intron SNP A A C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC61A1 29927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 127785928 127785928 + Silent SNP C C T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC61A2 55176 broad.mit.edu;hgsc.bcm.edu 37 10 12209851 12209851 + RNA SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC61B 10952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101984847 101984847 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC63 11231 broad.mit.edu;hgsc.bcm.edu 37 6 108279240 108279240 + 5'UTR SNP C C A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC63 11231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 108204350 108204350 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEC63 11231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 108227661 108227661 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SECISBP2 79048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 91972394 91972394 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SECISBP2 79048 hgsc.bcm.edu 37 9 91964776 91964776 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SECISBP2 79048 hgsc.bcm.edu;ucsc.edu 37 9 91964776 91964776 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49284863 49284863 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49284864 49284864 + Silent SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49293222 49293222 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49301479 49301479 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49301485 49301485 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49320719 49320719 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SECISBP2L 9728 hgsc.bcm.edu;ucsc.edu 37 15 49284777 49284777 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM SOLID SECISBP2L 9728 hgsc.bcm.edu;ucsc.edu 37 15 49309095 49309095 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEH1L 81929 hgsc.bcm.edu 37 18 12963339 12963339 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEL1L2 80343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 13830874 13830874 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEL1L3 23231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 25819801 25819801 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEL1L3 23231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 25834685 25834685 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEL1L3 23231 hgsc.bcm.edu;ucsc.edu 37 4 25834645 25834645 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELE 6401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169697008 169697008 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELE 6401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169701065 169701065 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELE 6401 hgsc.bcm.edu 37 1 169701011 169701011 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELE 6401 hgsc.bcm.edu 37 1 169701931 169701931 + Silent SNP G G C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELE 6401 hgsc.bcm.edu;ucsc.edu 37 1 169695896 169695896 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELE 6401 hgsc.bcm.edu;ucsc.edu 37 1 169701067 169701067 + Silent SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELENBP1 8991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151337664 151337664 + Splice_Site SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELENBP1 8991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151342244 151342244 + Silent SNP A A C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELENBP1 8991 broad.mit.edu;ucsc.edu 37 1 151339307 151339307 + Silent SNP C T T rs146898667 by1000genomes TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SELK 58515 hgsc.bcm.edu;ucsc.edu 37 3 53919916 53919916 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELL 6402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169677787 169677787 + Silent SNP A A T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELL 6402 hgsc.bcm.edu;ucsc.edu 37 1 169665718 169665718 + RNA SNP G G A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELO 83642 hgsc.bcm.edu 37 22 50655685 50655686 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELP 6403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169565278 169565278 + Silent SNP A A G novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELP 6403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169566355 169566355 + Missense_Mutation SNP G G T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELP 6403 hgsc.bcm.edu;ucsc.edu 37 1 169588410 169588410 + Silent SNP G G T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SELPLG 6404 hgsc.bcm.edu 37 12 109017651 109017680 + Frame_Shift_Del DEL GAGTGGTCTGTGCCTCCGTGGGCACTGGTT GAGTGGTCTGTGCCTCCGTGGGCACTGGTT - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 GAGTGGTCTGTGCCTCCGTGGGCACTGGTT GAGTGGTCTGTGCCTCCGTGGGCACTGGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SELPLG 6404 hgsc.bcm.edu;ucsc.edu 37 12 109017991 109017991 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA3A 10371 broad.mit.edu 37 7 83824112 83824112 + 5'UTR DEL G - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA3A 10371 broad.mit.edu 37 7 83824113 83824113 + 5'UTR DEL A - - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA3A 10371 broad.mit.edu 37 7 83824113 83824113 + 5'UTR DEL A - - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA3A 10371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 83590955 83590955 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3A 10371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 83640554 83640554 + Silent SNP A A G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3A 10371 hgsc.bcm.edu 37 7 83764187 83764187 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA3B 7869 hgsc.bcm.edu 37 3 50310781 50310781 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3C 10512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 80433459 80433459 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3D 223117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 84642124 84642124 + Missense_Mutation SNP A A T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3D 223117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 84694820 84694820 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3D 223117 hgsc.bcm.edu;ucsc.edu 37 7 84710863 84710863 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA3E 9723 broad.mit.edu 37 7 82996776 82996776 + 3'UTR SNP T G G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA3E 9723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82996992 82996992 + Silent SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3E 9723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82997339 82997339 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3E 9723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 83021907 83021907 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA3F 6405 broad.mit.edu 37 3 50225421 50225421 + Missense_Mutation SNP A T T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA3G 56920 broad.mit.edu;ucsc.edu 37 3 52472210 52472210 + Missense_Mutation SNP C T T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA4A 64218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156127886 156127886 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4A 64218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156146590 156146590 + Silent SNP A A G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4B 10509 broad.mit.edu 37 15 90762951 90762952 + Intron INS - G G rs3833824 bycluster;by1000genomes TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA4B 10509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90768565 90768565 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4B 10509 hgsc.bcm.edu;ucsc.edu 37 15 90768609 90768609 + Silent SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA4C 54910 broad.mit.edu 37 2 97527635 97527635 + Intron SNP C G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA4C 54910 hgsc.bcm.edu 37 2 97526749 97526749 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA4D 10507 broad.mit.edu 37 9 91977095 91977095 + 3'UTR SNP T A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA4D 10507 broad.mit.edu 37 9 91994191 91994191 + Silent SNP A G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA4D 10507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 92008488 92008488 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4D 10507 hgsc.bcm.edu 37 9 92017852 92017852 + Silent SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA4F 10505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74902021 74902021 + Silent SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4F 10505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74907017 74907017 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4G 57715 broad.mit.edu 37 10 102732548 102732548 + 5'UTR SNP T C C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA4G 57715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102738875 102738875 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA4G 57715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102740600 102740600 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA5A 9037 hgsc.bcm.edu;ucsc.edu 37 5 9122825 9122825 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA6A 57556 broad.mit.edu 37 5 115803579 115803581 + Intron DEL GTG - - rs10551961 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GTG GTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA6A 57556 broad.mit.edu 37 5 115803579 115803590 + Intron DEL GTGGTGGTGGTG - - rs10551961 bycluster;by1000genomes;alternate_allele TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 GTGGTGGTGGTG GTGGTGGTGGTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEMA6A 57556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 115803361 115803361 + Silent SNP C C G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA6C 10500 broad.mit.edu;hgsc.bcm.edu 37 1 151105698 151105698 + Silent SNP C C T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA6C 10500 hgsc.bcm.edu 37 1 151112489 151112489 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEMA6D 80031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48053615 48053615 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA6D 80031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48054430 48054430 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMA6D 80031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48063502 48063502 + Silent SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMG1 6406 broad.mit.edu;hgsc.bcm.edu 37 20 43835668 43835668 + 5'UTR SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMG1 6406 broad.mit.edu;hgsc.bcm.edu 37 20 43835669 43835669 + 5'UTR SNP C C G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMG1 6406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 43837138 43837138 + Silent SNP T T C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEMG2 6407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 43850086 43850086 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP1 29843 broad.mit.edu 37 12 48439012 48439012 + 3'UTR SNP G A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SENP1 29843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48442848 48442848 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP1 29843 broad.mit.edu;ucsc.edu 37 12 48495290 48495290 + 5'UTR SNP A T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SENP2 59343 hgsc.bcm.edu;ucsc.edu 37 3 185347563 185347563 + Intron SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP5 205564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196650309 196650309 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP6 26054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 76421100 76421100 + Silent SNP A A T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP6 26054 hgsc.bcm.edu 37 6 76369015 76369015 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP6 26054 hgsc.bcm.edu;ucsc.edu 37 6 76388338 76388338 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SENP7 57337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 101060582 101060582 + Silent SNP C C A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP7 57337 hgsc.bcm.edu;ucsc.edu 37 3 101090968 101090968 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP8 123228 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72432091 72432091 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SENP8 123228 hgsc.bcm.edu;ucsc.edu 37 15 72432093 72432093 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPHS1 22929 broad.mit.edu;hgsc.bcm.edu 37 10 13386847 13386848 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPHS2 22928 broad.mit.edu 37 16 30455564 30455564 + 3'UTR SNP A G G novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPHS2 22928 broad.mit.edu;ucsc.edu 37 16 30456187 30456187 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPHS2 22928 hgsc.bcm.edu 37 16 30456532 30456532 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPN1 57190 broad.mit.edu;hgsc.bcm.edu 37 1 26138019 26138019 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPN1 57190 hgsc.bcm.edu 37 1 26135162 26135162 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPN1 57190 hgsc.bcm.edu;ucsc.edu 37 1 26136292 26136293 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPP1 6414 broad.mit.edu;hgsc.bcm.edu 37 5 42804905 42804905 + Intron SNP A A G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPP1 6414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 42807034 42807035 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPSECS 51091 broad.mit.edu 37 4 25160704 25160704 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT11 55752 broad.mit.edu 37 4 77955767 77955767 + 3'UTR SNP T A A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT11 55752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77932908 77932908 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT11 55752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77941776 77941776 + Silent SNP T T G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT11 55752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77949832 77949832 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT1 1731 hgsc.bcm.edu 37 16 30389840 30389840 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPT2 4735 hgsc.bcm.edu 37 2 242276812 242276812 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPT2 4735 hgsc.bcm.edu;ucsc.edu 37 2 242285667 242285667 + Intron SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT3 55964 broad.mit.edu 37 22 42390888 42390889 + Intron DEL TG - - rs71759830 unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT3 55964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42383654 42383654 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT3 55964 hgsc.bcm.edu 37 22 42388735 42388735 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPT3 55964 hgsc.bcm.edu;ucsc.edu 37 22 42383241 42383241 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPT4 5414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56603081 56603081 + Silent SNP C C A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT4 5414 hgsc.bcm.edu;ucsc.edu 37 17 56604046 56604064 + Frame_Shift_Del DEL AGAGGAATCATAGGGATCA AGAGGAATCATAGGGATCA - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 AGAGGAATCATAGGGATCA AGAGGAATCATAGGGATCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT5 5413 broad.mit.edu 37 22 19711569 19711570 + 3'UTR DEL CG - - novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 CG CG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT5 5413 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 19707850 19707850 + Missense_Mutation SNP C C G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT6 23157 broad.mit.edu 37 X 118759293 118759294 + Intron INS - T T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT6 23157 broad.mit.edu;hgsc.bcm.edu 37 X 118750540 118750540 + 3'UTR SNP A A G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEPT8 23176 broad.mit.edu 37 5 132086877 132086877 + 3'UTR SNP C A A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT8 23176 broad.mit.edu 37 5 132087445 132087446 + 3'UTR DEL TT - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT8 23176 broad.mit.edu 37 5 132094374 132094374 + Intron SNP G A A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPT8 23176 hgsc.bcm.edu;ucsc.edu 37 5 132096903 132096903 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEPT9 10801 broad.mit.edu 37 17 75316328 75316328 + Intron SNP A G G rs140915871 by1000genomes TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEPX1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1990864 1990864 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERAC1 84947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158541585 158541585 + Silent SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERAC1 84947 broad.mit.edu;ucsc.edu 37 6 158569914 158569914 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERAC1 84947 hgsc.bcm.edu 37 6 158565367 158565367 + Silent SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERAC1 84947 hgsc.bcm.edu 37 6 158565367 158565367 + Silent SNP A A G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERAC1 84947 hgsc.bcm.edu 37 6 158565392 158565392 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERF2 10169 broad.mit.edu;hgsc.bcm.edu 37 15 44087848 44087848 + RNA SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERF2 10169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44085976 44085976 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERHL2 253190 broad.mit.edu 37 22 42951997 42951997 + Intron SNP T G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERHL2 253190 broad.mit.edu 37 22 42952151 42952151 + Intron DEL C - - rs3833391 bycluster TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERINC1 57515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 122768141 122768141 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERINC2 347735 hgsc.bcm.edu 37 1 31902299 31902300 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERINC4 619189 hgsc.bcm.edu;ucsc.edu 37 15 44087392 44087392 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERINC5 256987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79473191 79473191 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERINC5 256987 hgsc.bcm.edu;ucsc.edu 37 5 79462203 79462203 + Splice_Region SNP T T C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERINC5 256987 hgsc.bcm.edu;ucsc.edu 37 5 79465263 79465263 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERP1 27230 hgsc.bcm.edu;ucsc.edu 37 3 150262305 150262305 + Intron SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA10 51156 broad.mit.edu;ucsc.edu 37 14 94756558 94756560 + In_Frame_Del DEL TGA - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 TGA TGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA11 256394 hgsc.bcm.edu;ucsc.edu 37 14 94909003 94909003 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINA11 256394 hgsc.bcm.edu;ucsc.edu 37 14 94914808 94914808 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINA12 145264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94964360 94964360 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA12 145264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94964436 94964436 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA12 145264 hgsc.bcm.edu;ucsc.edu 37 14 94964183 94964183 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINA1 5265 broad.mit.edu 37 14 94844682 94844682 + 3'UTR SNP G A A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA1 5265 broad.mit.edu 37 14 94845675 94845675 + Intron DEL G - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA1 5265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94844895 94844895 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA1 5265 broad.mit.edu;ucsc.edu 37 14 94844824 94844824 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA3 12 broad.mit.edu;hgsc.bcm.edu 37 14 95080851 95080851 + Missense_Mutation SNP C C A rs144060757 unknown;alternate_allele TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA3 12 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95081158 95081158 + Missense_Mutation SNP A A G rs145819878 unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA4 5267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95029883 95029883 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA5 5104 broad.mit.edu 37 14 95057024 95057024 + Intron SNP G T T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA5 5104 broad.mit.edu 37 14 95058616 95058616 + 3'UTR SNP A T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA5 5104 broad.mit.edu 37 14 95058714 95058716 + 3'UTR DEL ATG - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 ATG ATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINA6 866 hgsc.bcm.edu;ucsc.edu 37 14 94780531 94780531 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINA9 327657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94936172 94936172 + Silent SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINA9 327657 hgsc.bcm.edu;ucsc.edu 37 14 94942468 94942468 + Splice_Region SNP C C A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB10 5273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61600419 61600419 + Silent SNP C C T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB11 89778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61390295 61390295 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB1 1992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 2836102 2836102 + Silent SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB1 1992 hgsc.bcm.edu 37 6 2834179 2834179 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB1 1992 hgsc.bcm.edu;ucsc.edu 37 6 2838791 2838791 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB13 5275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61255920 61255920 + Missense_Mutation SNP G G A rs139825462 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB13 5275 hgsc.bcm.edu 37 18 61264230 61264230 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB13 5275 hgsc.bcm.edu 37 18 61264230 61264230 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB13 5275 hgsc.bcm.edu;ucsc.edu 37 18 61255961 61255961 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB3 6317 broad.mit.edu 37 18 61326073 61326073 + Intron DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINB4 6318 broad.mit.edu;hgsc.bcm.edu 37 18 61310791 61310791 + Silent SNP G G C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB4 6318 hgsc.bcm.edu 37 18 61306561 61306561 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB4 6318 hgsc.bcm.edu 37 18 61306561 61306561 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB4 6318 hgsc.bcm.edu;ucsc.edu 37 18 61305037 61305038 + Frame_Shift_Ins INS - - AA novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB5 5268 broad.mit.edu;hgsc.bcm.edu 37 18 61154179 61154179 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB5 5268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61154215 61154215 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB5 5268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61154236 61154236 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB6 5269 broad.mit.edu 37 6 2955630 2955630 + Intron SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINB6 5269 broad.mit.edu 37 6 2957354 2957354 + Intron DEL G - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINB7 8710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61463591 61463591 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB7 8710 hgsc.bcm.edu 37 18 61471602 61471602 + Silent SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINB8 5271 broad.mit.edu;hgsc.bcm.edu 37 18 61654513 61654513 + 3'UTR SNP A A G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB8 5271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61650927 61650927 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINB8 5271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61654390 61654390 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINE1 5054 broad.mit.edu 37 7 100779089 100779089 + Intron SNP C T T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINE1 5054 broad.mit.edu 37 7 100780223 100780223 + Intron SNP T G G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINE1 5054 broad.mit.edu 37 7 100780229 100780229 + Intron SNP T G G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINE1 5054 broad.mit.edu 37 7 100780229 100780229 + Intron SNP T G G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINE1 5054 broad.mit.edu 37 7 100780229 100780229 + Intron SNP T G G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINE2 5270 broad.mit.edu 37 2 224840438 224840438 + 3'UTR SNP A G G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINE2 5270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 224866441 224866441 + Silent SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINE2 5270 hgsc.bcm.edu;ucsc.edu 37 2 224862980 224862980 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINF2 5345 broad.mit.edu 37 17 1657979 1657979 + 3'UTR DEL T - - novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINF2 5345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1648687 1648687 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINF2 5345 broad.mit.edu;ucsc.edu 37 17 1650770 1650770 + Missense_Mutation SNP A G G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPING1 710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57367686 57367686 + Missense_Mutation SNP T T C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPING1 710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57373959 57373959 + Missense_Mutation SNP C C G rs61761890 bycluster;alternate_allele TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINH1 871 broad.mit.edu;hgsc.bcm.edu 37 11 75280027 75280027 + Silent SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINI1 5274 broad.mit.edu 37 3 167453770 167453770 + Intron DEL A - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SERPINI1 5274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167508254 167508254 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINI1 5274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167540830 167540830 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINI1 5274 hgsc.bcm.edu;ucsc.edu 37 3 167508176 167508176 + Silent SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERPINI2 5276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167184993 167184993 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SERPINI2 5276 hgsc.bcm.edu;ucsc.edu 37 3 167167125 167167125 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SERTAD4 56256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 210412917 210412917 + Silent SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SESN3 143686 broad.mit.edu 37 11 94906296 94906296 + 3'UTR SNP C A A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SESN3 143686 broad.mit.edu 37 11 94906296 94906296 + 3'UTR SNP C A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SESTD1 91404 broad.mit.edu 37 2 179974274 179974274 + 3'UTR DEL T - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SESTD1 91404 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179979860 179979860 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SESTD1 91404 hgsc.bcm.edu 37 2 179997085 179997085 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SESTD1 91404 hgsc.bcm.edu 37 2 179997085 179997085 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETBP1 26040 broad.mit.edu 37 18 42281379 42281379 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SETBP1 26040 broad.mit.edu 37 18 42281380 42281380 + Silent SNP C G G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SETBP1 26040 broad.mit.edu 37 18 42532845 42532845 + Silent SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SETBP1 26040 broad.mit.edu;hgsc.bcm.edu 37 18 42530495 42530495 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42530906 42530906 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42530907 42530907 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42531246 42531246 + Silent SNP A A G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42531862 42531862 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42618593 42618593 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETBP1 26040 hgsc.bcm.edu;ucsc.edu 37 18 42281648 42281648 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETBP1 26040 hgsc.bcm.edu;ucsc.edu 37 18 42425916 42425916 + Intron SNP C C G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD1A 9739 broad.mit.edu;hgsc.bcm.edu 37 16 30990969 30990969 + Missense_Mutation SNP C C A rs147948503 byfrequency;alternate_allele TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD1A 9739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30977377 30977377 + Silent SNP C C G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD1A 9739 hgsc.bcm.edu 37 16 30975991 30975992 + Frame_Shift_Ins INS - - C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD1B 23067 hgsc.bcm.edu 37 12 122243975 122243975 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETD2 29072 broad.mit.edu 37 3 47058513 47058513 + 3'UTR SNP G A A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 broad.mit.edu 37 3 47127737 47127737 + Nonsense_Mutation SNP C T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 broad.mit.edu 37 3 47161671 47161671 + Splice_Site SNP C G G novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 broad.mit.edu;hgsc.bcm.edu 37 3 47059132 47059132 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu 37 3 47163945 47163945 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47079180 47079181 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - - G - - Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47084168 47084175 + Frame_Shift_Del DEL TTATTTGT TTATTTGT - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 TTATTTGT TTATTTGT TTATTTGT - TTATTTGT TTATTTGT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47098903 47098903 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47125280 47125289 + Frame_Shift_Del DEL TCTTGGCTCC TCTTGGCTCC - novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 TCTTGGCTCC TCTTGGCTCC TCTTGGCTCC - TCTTGGCTCC TCTTGGCTCC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47125380 47125380 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47125791 47125791 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47127749 47127749 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A A - A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47129722 47129722 + Nonsense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47142967 47142967 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47143014 47143014 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47143043 47143043 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47143045 47143045 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47144873 47144873 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47144880 47144880 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47158115 47158115 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47162024 47162024 + Nonsense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47162162 47162162 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47162787 47162787 + Nonsense_Mutation SNP A A C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47163209 47163209 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47164342 47164343 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 GA GA GA - GA GA Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47164498 47164498 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47164613 47164613 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47164730 47164730 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47165361 47165361 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47079269 47079269 + Splice_Site SNP T A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47127736 47127736 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47144868 47144868 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47165360 47165360 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SETD2 29072 hgsc.bcm.edu 37 3 47098445 47098445 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID SETD2 29072 hgsc.bcm.edu 37 3 47122556 47122556 + Intron SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID SETD2 29072 hgsc.bcm.edu 37 3 47155365 47155365 + Splice_Site SNP C C A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID SETD2 29072 hgsc.bcm.edu 37 3 47155365 47155365 + Splice_Site SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47058645 47058646 + Frame_Shift_Del INS - - A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47059128 47059128 + Silent SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47079155 47079155 + Splice_Site SNP C C G novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47098412 47098413 + Frame_Shift_Ins INS - - AT novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - - AT - - Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47108557 47108557 + Intron SNP T T A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47142965 47142965 + Nonsense_Mutation SNP A A C novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47142969 47142969 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture PGM SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47144879 47144879 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47144909 47144909 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47158203 47158203 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47162268 47162269 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 AT AT AT - AT AT Unknown Valid Somatic Phase_I Capture 454 SOLID SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47163990 47164005 + Frame_Shift_Del DEL TTTGACCAAAGGGGAT TTTGACCAAAGGGGAT - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 TTTGACCAAAGGGGAT TTTGACCAAAGGGGAT TTTGACCAAAGGGGAT - TTTGACCAAAGGGGAT TTTGACCAAAGGGGAT Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47164514 47164514 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID SETD3 84193 broad.mit.edu 37 14 99876317 99876318 + Intron INS - G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SETD3 84193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 99932086 99932086 + Silent SNP A A G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD3 84193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 99932102 99932102 + Missense_Mutation SNP G G A rs186182372 by1000genomes;alternate_allele TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD4 54093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37418054 37418054 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD4 54093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37418187 37418187 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD4 54093 hgsc.bcm.edu 37 21 37418057 37418057 + Silent SNP C C T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETD4 54093 hgsc.bcm.edu;ucsc.edu 37 21 37416207 37416207 + Silent SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETD5 55209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9486834 9486834 + Silent SNP A A C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD5 55209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9495474 9495474 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD5 55209 hgsc.bcm.edu 37 3 9517686 9517686 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD5 55209 hgsc.bcm.edu;ucsc.edu 37 3 9482172 9482172 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETD5 55209 hgsc.bcm.edu;ucsc.edu 37 3 9515023 9515023 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETD5 55209 hgsc.bcm.edu;ucsc.edu 37 3 9517397 9517397 + Silent SNP A A C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETD6 79918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58550759 58550759 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETD8 387893 broad.mit.edu 37 12 123892273 123892273 + 3'UTR SNP C A A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SETDB1 9869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150923430 150923430 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETDB1 9869 hgsc.bcm.edu 37 1 150923098 150923098 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETDB1 9869 hgsc.bcm.edu 37 1 150923431 150923431 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETDB1 9869 hgsc.bcm.edu 37 1 150923454 150923454 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETMAR 6419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 4355062 4355062 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETX 23064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135173490 135173490 + Silent SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETX 23064 broad.mit.edu;ucsc.edu 37 9 135202159 135202159 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135202188 135202190 + In_Frame_Del DEL AAA AAA - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 AAA AAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135202859 135202859 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135203821 135203821 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135210042 135210042 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6 124925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27284413 27284413 + Missense_Mutation SNP C C T rs117736100 by1000genomes TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6 124925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27286442 27286442 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6 124925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27287870 27287870 + Silent SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6 124925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27308944 27308944 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6L2 26470 broad.mit.edu 37 16 29910431 29910431 + 5'UTR DEL G - - novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEZ6L2 26470 broad.mit.edu 37 16 29910431 29910431 + 5'UTR DEL G - - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SEZ6L2 26470 hgsc.bcm.edu;ucsc.edu 37 16 29884668 29884668 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SEZ6L 23544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26693016 26693016 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6L 23544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26743810 26743810 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SEZ6L 23544 hgsc.bcm.edu 37 22 26688760 26688760 + Silent SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SF3A1 10291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30736281 30736281 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3A1 10291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30740940 30740940 + Silent SNP T T A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3A2 8175 broad.mit.edu 37 19 2245452 2245452 + Silent SNP C A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SF3A3 10946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38455225 38455225 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3A3 10946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38455226 38455226 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3A3 10946 hgsc.bcm.edu 37 1 38450366 38450366 + Intron SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SF3B1 23451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 198260796 198260796 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3B1 23451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 198266611 198266611 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3B1 23451 broad.mit.edu;ucsc.edu 37 2 198257832 198257832 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SF3B1 23451 hgsc.bcm.edu 37 2 198266832 198266832 + Silent SNP T T C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SF3B1 23451 hgsc.bcm.edu 37 2 198266833 198266833 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SF3B1 23451 hgsc.bcm.edu;ucsc.edu 37 2 198257042 198257042 + Silent SNP A A C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SF3B14 51639 broad.mit.edu 37 2 24299166 24299166 + 5'UTR SNP G T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SF3B2 10992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65822560 65822560 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3B2 10992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65827424 65827424 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3B3 23450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 70594436 70594436 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3B3 23450 hgsc.bcm.edu 37 16 70563083 70563084 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SF3B3 23450 hgsc.bcm.edu;ucsc.edu 37 16 70605091 70605091 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SF4 0 broad.mit.edu 37 19 19388598 19388598 + Missense_Mutation SNP T C C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFI1 9814 hgsc.bcm.edu 37 22 31998685 31998685 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFI1 9814 hgsc.bcm.edu;ucsc.edu 37 22 31927108 31927108 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1 51460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52940142 52940142 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1 51460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52960072 52960072 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1 51460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52960073 52960073 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1(dist=19086) 0 hgsc.bcm.edu 37 3 53099175 53099175 + IGR SNP T T C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1(dist=19088) 0 hgsc.bcm.edu 37 3 53099177 53099177 + IGR SNP C C T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1(dist=19090) 0 hgsc.bcm.edu 37 3 53099179 53099179 + IGR SNP T T C novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT1(dist=19164) 0 hgsc.bcm.edu 37 3 53099253 53099253 + IGR SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT2 57713 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7217995 7217995 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT2 57713 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7217996 7217996 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFMBT2 57713 hgsc.bcm.edu 37 10 7212905 7212905 + Silent SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFMBT2 57713 hgsc.bcm.edu 37 10 7239537 7239537 + Silent SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFPQ 6421 broad.mit.edu 37 1 35649755 35649755 + 3'UTR DEL A - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFPQ 6421 hgsc.bcm.edu;ucsc.edu 37 1 35657116 35657116 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFRP1 6422 broad.mit.edu 37 8 41166638 41166640 + In_Frame_Del DEL GCT - - rs144518405 bycluster;by1000genomes TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 GCT GCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRP1 6422 broad.mit.edu 37 8 41166638 41166640 + In_Frame_Del DEL GCT - - rs144518405 bycluster;by1000genomes TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 GCT GCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRP2 6423 broad.mit.edu 37 4 154702558 154702558 + 3'UTR SNP G T T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRP4 6424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 37949276 37949276 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRP4 6424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 37955990 37955990 + Silent SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRP4 6424 hgsc.bcm.edu 37 7 37947147 37947148 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRP4 6424 hgsc.bcm.edu 37 7 37947147 37947148 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRP4 6424 hgsc.bcm.edu;ucsc.edu 37 7 37953984 37953984 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRS11 0 broad.mit.edu 37 1 70697699 70697699 + Intron SNP A G G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS12 0 hgsc.bcm.edu;ucsc.edu 37 5 65455094 65455094 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33043798 33043798 + Nonsense_Mutation SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33066569 33066569 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33067196 33067196 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33074137 33074137 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33074643 33074643 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33076230 33076230 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFRS15 0 hgsc.bcm.edu 37 21 33058544 33058544 + Intron SNP A A C rs80021168 unknown;alternate_allele TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFRS16 0 broad.mit.edu 37 19 45562555 45562555 + Missense_Mutation SNP C A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS1 0 broad.mit.edu 37 17 56082624 56082624 + 3'UTR SNP G A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS18 0 hgsc.bcm.edu 37 6 99848473 99848473 + Silent SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFRS18 0 hgsc.bcm.edu 37 6 99860572 99860572 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFRS18 0 hgsc.bcm.edu;ucsc.edu 37 6 99858629 99858629 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFRS2 0 broad.mit.edu 37 17 74732524 74732524 + Nonsense_Mutation SNP G A A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS3 0 broad.mit.edu 37 6 36569822 36569822 + 3'UTR SNP T A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS3 0 broad.mit.edu 37 6 36570082 36570082 + 3'UTR DEL T - - rs142053744 by1000genomes TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS4 0 broad.mit.edu 37 1 29474870 29474870 + 3'UTR SNP C A A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS5 0 broad.mit.edu 37 14 70236174 70236175 + Intron INS - GA GA novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS5 0 broad.mit.edu 37 14 70236174 70236175 + Intron INS - GA GA novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFRS9 0 broad.mit.edu 37 12 120899703 120899703 + 3'UTR DEL A - - rs34136998 unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFSWAP 6433 hgsc.bcm.edu;ucsc.edu 37 12 132211499 132211506 + Frame_Shift_Del DEL TCTGACAA TCTGACAA - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 TCTGACAA TCTGACAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFT2D2 375035 hgsc.bcm.edu;ucsc.edu 37 1 168204426 168204426 + Splice_Region SNP G G C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFTPA1 653509 hgsc.bcm.edu 37 10 81371341 81371341 + Intron SNP G G T rs3997772 bycluster;byfrequency;by1000genomes TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFTPA2 729238 broad.mit.edu 37 10 81316166 81316166 + 3'UTR DEL G - - rs36019375 unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFTPD 6441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 81702178 81702178 + Silent SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFTPD 6441 hgsc.bcm.edu 37 10 81702585 81702585 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFXN1 94081 broad.mit.edu;hgsc.bcm.edu 37 5 174949468 174949468 + Intron SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFXN1 94081 hgsc.bcm.edu;ucsc.edu 37 5 174940584 174940584 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFXN2 118980 broad.mit.edu;hgsc.bcm.edu 37 10 104489089 104489089 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFXN4 119559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 120900805 120900805 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SFXN4 119559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 120917388 120917388 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFXN4 119559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 120921912 120921912 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SFXN4 119559 hgsc.bcm.edu;ucsc.edu 37 10 120900791 120900791 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SFXN5 94097 broad.mit.edu 37 2 73169495 73169495 + 3'UTR DEL T - - rs145173306 bycluster;by1000genomes TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SFXN5 94097 hgsc.bcm.edu 37 2 73188297 73188298 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGCA 6442 broad.mit.edu 37 17 48246775 48246776 + Intron INS - AC AC rs3986433 bycluster;by1000genomes;alternate_allele TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGCA 6442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48252717 48252717 + Silent SNP C C G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGCA 6442 hgsc.bcm.edu 37 17 48245918 48245918 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGCA 6442 hgsc.bcm.edu;ucsc.edu 37 17 48243426 48243427 + Frame_Shift_Ins INS - - AA novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGCD 6444 broad.mit.edu;ucsc.edu 37 5 156074477 156074477 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGCE 8910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94257637 94257637 + Silent SNP T T A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGCZ 137868 broad.mit.edu 37 8 13947906 13947906 + 3'UTR SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGCZ 137868 hgsc.bcm.edu 37 8 13959919 13959919 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGEF 0 broad.mit.edu 37 3 153973334 153973334 + 3'UTR SNP T C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGEF 0 hgsc.bcm.edu;ucsc.edu 37 3 153912433 153912433 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGIP1 84251 broad.mit.edu 37 1 67160938 67160939 + Intron INS - A A rs5774833 unknown;alternate_allele TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGIP1 84251 broad.mit.edu 37 1 67160938 67160939 + Intron INS - A A rs5774833 unknown;alternate_allele TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGIP1 84251 broad.mit.edu 37 1 67160939 67160939 + Intron DEL A - - rs5774833 unknown;alternate_allele TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGIP1 84251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67101650 67101650 + Silent SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGIP1 84251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67147913 67147913 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGIP1 84251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67161174 67161174 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGIP1 84251 hgsc.bcm.edu;ucsc.edu 37 1 67108479 67108479 + Intron SNP C C A novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGK1 6446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 134494169 134494169 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK1 6446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 134495196 134495196 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK1 6446 hgsc.bcm.edu;ucsc.edu 37 6 134495223 134495223 + Splice_Region SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGK1 6446 hgsc.bcm.edu;ucsc.edu 37 6 134495942 134495943 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK2 10110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 42199332 42199332 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK2 10110 hgsc.bcm.edu 37 20 42199710 42199710 + Intron SNP T T G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK223 157285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8185726 8185726 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK223 157285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8233967 8233967 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK223 157285 hgsc.bcm.edu;ucsc.edu 37 8 8185255 8185256 + Frame_Shift_Ins INS - - AA novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK223 157285 broad.mit.edu 37 8 8175907 8175907 + Missense_Mutation SNP C A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGK269 0 hgsc.bcm.edu 37 15 77406808 77406808 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGK269 0 hgsc.bcm.edu;ucsc.edu 37 15 77407253 77407253 + Silent SNP G G A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGK269 0 hgsc.bcm.edu;ucsc.edu 37 15 77407312 77407312 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGK3 23678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67748020 67748020 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK494 124923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26939689 26939689 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK494 124923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26940338 26940338 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGK494 124923 broad.mit.edu 37 17 26934997 26935000 + 3'UTR DEL TTAT - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 TTAT TTAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGOL2 151246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201437495 201437495 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGOL2 151246 hgsc.bcm.edu;ucsc.edu 37 2 201400877 201400877 + Intron SNP T T A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGPL1 8879 broad.mit.edu;hgsc.bcm.edu 37 10 72617449 72617449 + Splice_Site SNP T T C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGPL1 8879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 72631655 72631655 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGPL1 8879 hgsc.bcm.edu;ucsc.edu 37 10 72610956 72610956 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGPP1 81537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64152863 64152863 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGPP2 130367 hgsc.bcm.edu 37 2 223386613 223386613 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGPP2 130367 hgsc.bcm.edu;ucsc.edu 37 2 223423399 223423399 + Missense_Mutation SNP T T C rs188535288 by1000genomes TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGSH 6448 broad.mit.edu 37 17 78187722 78187723 + Intron DEL AG - - rs34029730 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGSM1 129049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 25251635 25251635 + Silent SNP T T A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGSM1 129049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 25282686 25282686 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGSM1 129049 hgsc.bcm.edu 37 22 25282669 25282669 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGSM1 129049 hgsc.bcm.edu;ucsc.edu 37 22 25294340 25294340 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGSM3 27352 broad.mit.edu 37 22 40803186 40803186 + Intron SNP G T T rs2018393 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SGSM3 27352 hgsc.bcm.edu 37 22 40804077 40804078 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SGSM3 27352 hgsc.bcm.edu;ucsc.edu 37 22 40803848 40803848 + Splice_Site SNP G G C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SGTA 6449 hgsc.bcm.edu 37 19 2769005 2769005 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH2B1 25970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28878735 28878735 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH2B2 10603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101952119 101952119 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH2D1A 4068 broad.mit.edu 37 X 123505313 123505313 + 3'UTR SNP A G G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH2D1B 117157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 162368719 162368719 + Silent SNP T T G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH2D3A 10045 broad.mit.edu 37 19 6754252 6754252 + Intron DEL C - - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH2D3A 10045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6760899 6760899 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH2D3C 10044 hgsc.bcm.edu;ucsc.edu 37 9 130502552 130502552 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH2D4A 63898 broad.mit.edu 37 8 19252273 19252277 + 3'UTR DEL AAAGT - - rs148152269 bycluster;by1000genomes TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 AAAGT AAAGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH2D4A 63898 hgsc.bcm.edu 37 8 19252099 19252099 + Silent SNP C C T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH2D7 646892 broad.mit.edu 37 15 78393441 78393441 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH2D7 646892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78393416 78393416 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH2D7 646892 hgsc.bcm.edu;ucsc.edu 37 15 78385103 78385103 + Splice_Site SNP G G A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3BGR 6450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40834425 40834425 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3BP2 6452 broad.mit.edu 37 4 2826495 2826495 + Intron SNP G C C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3BP2 6452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2833702 2833702 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3BP4 23677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 235949909 235949910 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3BP4 23677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 235950115 235950115 + Silent SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3BP4 23677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 235951396 235951396 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3BP4 23677 hgsc.bcm.edu 37 2 235950909 235950909 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3BP5L 80851 broad.mit.edu 37 1 249106452 249106452 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3D19 152503 broad.mit.edu 37 4 152043042 152043042 + 3'UTR SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3D19 152503 hgsc.bcm.edu;ucsc.edu 37 4 152048840 152048840 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3GL1 6455 hgsc.bcm.edu 37 19 4363420 4363420 + Silent SNP G G A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3GL1 6455 hgsc.bcm.edu 37 19 4363421 4363421 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3GLB1 51100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87200796 87200796 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3GLB2 56904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131772971 131772971 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3KBP1 30011 hgsc.bcm.edu 37 X 19560246 19560247 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3KBP1 30011 hgsc.bcm.edu 37 X 19560246 19560247 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3KBP1 30011 hgsc.bcm.edu;ucsc.edu 37 X 19587268 19587268 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3PXD2B 285590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 171789871 171789871 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3RF1 57630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 170190302 170190302 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3RF2 153769 hgsc.bcm.edu;ucsc.edu 37 5 145428752 145428752 + Silent SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3RF3 344558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 110053415 110053415 + Silent SNP G G T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3TC1 54436 broad.mit.edu 37 4 8242813 8242814 + 3'UTR INS - T T rs111976618 bycluster;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC1 54436 broad.mit.edu 37 4 8242814 8242814 + 3'UTR DEL T - - rs111976618 bycluster;by1000genomes TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC1 54436 broad.mit.edu 37 4 8242814 8242814 + 3'UTR DEL T - - rs111976618 bycluster;by1000genomes TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC1 54436 broad.mit.edu 37 4 8242814 8242814 + 3'UTR DEL T - - rs111976618 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC1 54436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8217896 8217896 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3TC1 54436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8224578 8224578 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3TC1 54436 hgsc.bcm.edu 37 4 8229881 8229881 + Silent SNP A A T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SH3TC1 54436 hgsc.bcm.edu;ucsc.edu 37 4 8218768 8218768 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3TC2 79628 broad.mit.edu 37 5 148334267 148334268 + RNA DEL CT - - rs149492329 bycluster;by1000genomes TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC2 79628 broad.mit.edu 37 5 148375835 148375836 + 3'UTR DEL AG - - rs146811206 by1000genomes TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC2 79628 broad.mit.edu 37 5 148380729 148380730 + 3'UTR DEL AC - - rs146901634 by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SH3TC2 79628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148406556 148406556 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SH3YL1 26751 hgsc.bcm.edu 37 2 249744 249744 + 5'UTR SNP G G C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHANK1 50944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51215207 51215207 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHANK1 50944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51219979 51219979 + Silent SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHANK1 50944 hgsc.bcm.edu;ucsc.edu 37 19 51190930 51190930 + Intron SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHANK2 22941 broad.mit.edu;hgsc.bcm.edu 37 11 70338536 70338536 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHANK2 22941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 70332433 70332433 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHANK2 22941 hgsc.bcm.edu;ucsc.edu 37 11 70331568 70331568 + Silent SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHANK2 22941 hgsc.bcm.edu;ucsc.edu 37 11 70349010 70349010 + Silent SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHANK3 85358 broad.mit.edu 37 22 51160606 51160606 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHANK3 85358 hgsc.bcm.edu;ucsc.edu 37 22 51143424 51143425 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHARPIN 81858 broad.mit.edu;ucsc.edu 37 8 145154959 145154959 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHARPIN 81858 hgsc.bcm.edu;ucsc.edu 37 8 145154874 145154874 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHB 6461 hgsc.bcm.edu 37 9 37974676 37974677 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHC1 6464 broad.mit.edu 37 1 154938670 154938670 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHC1 6464 broad.mit.edu;ucsc.edu 37 1 154941261 154941261 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHC1 6464 hgsc.bcm.edu;ucsc.edu 37 1 154940439 154940439 + Intron SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHC2 25759 broad.mit.edu;hgsc.bcm.edu 37 19 422337 422337 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHC2 25759 hgsc.bcm.edu 37 19 434718 434718 + Silent SNP G G A rs61749991 bycluster;byfrequency;by1000genomes TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHC3 53358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 91680466 91680466 + Silent SNP A A C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHC3 53358 hgsc.bcm.edu 37 9 91653009 91653009 + Missense_Mutation SNP A A G rs181529544 by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHCBP1 79801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46652119 46652119 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHCBP1 79801 hgsc.bcm.edu;ucsc.edu 37 16 46651587 46651587 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHD 56961 broad.mit.edu;hgsc.bcm.edu 37 19 4280225 4280225 + Silent SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHE 126669 broad.mit.edu;hgsc.bcm.edu 37 1 154456584 154456584 + 3'UTR SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHF 90525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45470431 45470431 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHH 6469 broad.mit.edu;hgsc.bcm.edu 37 7 155596300 155596300 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHISA2 387914 hgsc.bcm.edu 37 13 26624935 26624935 + Missense_Mutation SNP C C T rs111516934 bycluster;byfrequency;by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHISA4 149345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201860697 201860697 + Splice_Site SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHISA5 51246 broad.mit.edu 37 3 48514907 48514907 + Intron DEL G - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHISA5 51246 hgsc.bcm.edu;ucsc.edu 37 3 48538657 48538657 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHISA7 729956 hgsc.bcm.edu;ucsc.edu 37 19 55949028 55949028 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHISA9 729993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 13329151 13329151 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHISA9 729993 broad.mit.edu 37 16 13003703 13003706 + Intron DEL CCTT - - rs112196996 unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 CCTT CCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHISA9 729993 hgsc.bcm.edu;ucsc.edu 37 16 13307111 13307111 + Intron SNP A A C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHKBP1 92799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41094601 41094601 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHMT1 6470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18243556 18243556 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHMT1 6470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18250958 18250958 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHMT2 6472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57626066 57626066 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHMT2 6472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57627609 57627609 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHMT2 6472 hgsc.bcm.edu 37 12 57627119 57627119 + Silent SNP C C A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHMT2 6472 hgsc.bcm.edu;ucsc.edu 37 12 57625269 57625269 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHOC2 8036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112764372 112764372 + Silent SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHOX2 6474 hgsc.bcm.edu;ucsc.edu 37 3 157822925 157822925 + Intron SNP A A G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHPK 23729 hgsc.bcm.edu;ucsc.edu 37 17 3518702 3518702 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHPRH 257218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146273498 146273498 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHQ1 55164 broad.mit.edu 37 3 72897496 72897496 + 5'UTR SNP G A A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHQ1 55164 hgsc.bcm.edu 37 3 72893585 72893585 + Intron SNP A A G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHROOM1 134549 broad.mit.edu 37 5 132158730 132158730 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHROOM1 134549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132160424 132160424 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM1 134549 broad.mit.edu;ucsc.edu 37 5 132158628 132158628 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHROOM1 134549 broad.mit.edu;ucsc.edu 37 5 132158629 132158629 + Silent SNP C A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SHROOM2 357 broad.mit.edu;hgsc.bcm.edu 37 X 9914789 9914789 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM2 357 hgsc.bcm.edu 37 X 9900830 9900830 + Silent SNP G G T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SHROOM3 57619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77661527 77661527 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM3 57619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77677855 77677855 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 broad.mit.edu;hgsc.bcm.edu 37 X 50556986 50556986 + Silent SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50341293 50341293 + Silent SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50376678 50376678 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50556989 50556989 + Silent SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350758 + Silent SNP C C T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350758 + Silent SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350759 + In_Frame_Ins INS - - TGCTGCTGCTGT novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350759 + In_Frame_Ins INS - - TGCTGCTGCTGT novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SI 6476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 164754179 164754179 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SI 6476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 164767593 164767593 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SI 6476 hgsc.bcm.edu 37 3 164732948 164732948 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SI 6476 hgsc.bcm.edu 37 3 164776805 164776805 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SI 6476 hgsc.bcm.edu 37 3 164777762 164777762 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SI 6476 hgsc.bcm.edu;ucsc.edu 37 3 164741459 164741459 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIAE 54414 hgsc.bcm.edu;ucsc.edu 37 11 124509622 124509622 + Missense_Mutation SNP C C A rs146397917 unknown;alternate_allele TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIAH1 6477 broad.mit.edu 37 16 48395279 48395279 + 3'UTR DEL T - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIAH1 6477 hgsc.bcm.edu 37 16 48396058 48396058 + Silent SNP T T A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIAH1 6477 hgsc.bcm.edu;ucsc.edu 37 16 48396058 48396058 + Silent SNP T T A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIAH2 6478 broad.mit.edu 37 3 150460088 150460088 + Missense_Mutation SNP C T T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIAH2 6478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150460186 150460186 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIDT1 54847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113325904 113325904 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIDT2 51092 broad.mit.edu;hgsc.bcm.edu 37 11 117052642 117052642 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIDT2 51092 hgsc.bcm.edu;ucsc.edu 37 11 117058118 117058118 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC10 89790 broad.mit.edu 37 19 51914248 51914248 + 3'UTR SNP G A A rs192307990 by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC10 89790 hgsc.bcm.edu 37 19 51919240 51919240 + Silent SNP C C T rs79484306 unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC10 89790 hgsc.bcm.edu 37 19 51919240 51919240 + Silent SNP C C T rs79484306 unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC10 89790 hgsc.bcm.edu 37 19 51919998 51919998 + Missense_Mutation SNP T T C rs61741677 bycluster;byfrequency;by1000genomes TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC10 89790 hgsc.bcm.edu;ucsc.edu 37 19 51919998 51919998 + Missense_Mutation SNP T T C rs61741677 bycluster;byfrequency;by1000genomes TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC10 89790 hgsc.bcm.edu;ucsc.edu 37 19 51920109 51920109 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC11 114132 broad.mit.edu;hgsc.bcm.edu 37 19 50461806 50461806 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC12 89858 broad.mit.edu 37 19 52004993 52004993 + 5'UTR SNP G T T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC12 89858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52004612 52004612 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC12 89858 hgsc.bcm.edu 37 19 52004791 52004792 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC12 89858 hgsc.bcm.edu;ucsc.edu 37 19 52000158 52000158 + Silent SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC12 89858 hgsc.bcm.edu;ucsc.edu 37 19 52001300 52001300 + Silent SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC14 100049587 hgsc.bcm.edu 37 19 52146847 52146847 + Missense_Mutation SNP G G A rs190074952 by1000genomes TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC16 400709 broad.mit.edu 37 19 50474491 50474491 + Intron SNP G A A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC16 400709 broad.mit.edu 37 19 50474955 50474955 + Intron SNP C T T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC1 6614 broad.mit.edu 37 20 3679976 3679976 + Silent SNP G A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC1 6614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3673709 3673709 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC1 6614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3677901 3677901 + Silent SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC5 8778 broad.mit.edu 37 19 52115343 52115344 + 3'UTR INS - TCATCTGTTTTCTTTCTGC TCATCTGTTTTCTTTCTGC novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC5 8778 hgsc.bcm.edu 37 19 52131256 52131257 + Frame_Shift_Ins INS - - G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC6 946 broad.mit.edu 37 19 52035065 52035069 + Splice_Site DEL AGAGA - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 AGAGA AGAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC6 946 hgsc.bcm.edu 37 19 52033760 52033760 + Intron SNP G G A rs148934624 by1000genomes TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC7 27036 hgsc.bcm.edu;ucsc.edu 37 19 51645785 51645785 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC8 27181 broad.mit.edu;hgsc.bcm.edu 37 19 51958703 51958703 + Silent SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC8 27181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51961243 51961243 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC8 27181 broad.mit.edu;ucsc.edu 37 19 51961425 51961425 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGLEC8 27181 hgsc.bcm.edu 37 19 51958885 51958885 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC8 27181 hgsc.bcm.edu;ucsc.edu 37 19 51955677 51955677 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIGLEC8 27181 hgsc.bcm.edu;ucsc.edu 37 19 51957520 51957520 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIGLEC9 27180 broad.mit.edu;ucsc.edu 37 19 51628430 51628430 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIGMAR1 10280 broad.mit.edu 37 9 34634946 34634946 + 3'UTR DEL C - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIK1 150094 broad.mit.edu 37 21 44836039 44836040 + 3'UTR INS - A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIK1 150094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 44840177 44840177 + Silent SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIK1 150094 hgsc.bcm.edu 37 21 44841005 44841005 + Silent SNP G G T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIK2 23235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111591208 111591208 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIK2 23235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111591281 111591281 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIK2 23235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111591712 111591712 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIK2 23235 hgsc.bcm.edu;ucsc.edu 37 11 111558776 111558776 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIK3 23387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 116746997 116746997 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIL1 64374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138378410 138378410 + Splice_Site SNP T T A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIM1 6492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100841464 100841464 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIM2 6493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38084845 38084845 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIN3A 25942 broad.mit.edu 37 15 75705213 75705213 + Missense_Mutation SNP A G G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIN3A 25942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75682103 75682103 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIN3A 25942 hgsc.bcm.edu 37 15 75702579 75702579 + Silent SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIN3B 23309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16977286 16977286 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L1 26037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 72055449 72055449 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L1 26037 hgsc.bcm.edu 37 14 72055087 72055087 + Silent SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIPA1L1 26037 hgsc.bcm.edu;ucsc.edu 37 14 72117112 72117112 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L1 26037 hgsc.bcm.edu;ucsc.edu 37 14 72169179 72169179 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIPA1L2 57568 broad.mit.edu;hgsc.bcm.edu 37 1 232651061 232651061 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L2 57568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 232538143 232538143 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L2 57568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 232650730 232650730 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L2 57568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 232650976 232650976 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L2 57568 broad.mit.edu;ucsc.edu 37 1 232607212 232607212 + Silent SNP T A A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIPA1L2 57568 hgsc.bcm.edu 37 1 232581296 232581296 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIPA1L2 57568 hgsc.bcm.edu 37 1 232650234 232650234 + Silent SNP T T G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIPA1L2 57568 hgsc.bcm.edu;ucsc.edu 37 1 232600814 232600814 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIPA1L3 23094 broad.mit.edu 37 19 38632053 38632053 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIPA1L3 23094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38572298 38572298 + Silent SNP A A G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L3 23094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38573642 38573642 + Silent SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L3 23094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38591731 38591731 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L3 23094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38609984 38609984 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIPA1L3 23094 hgsc.bcm.edu;ucsc.edu 37 19 38609984 38609984 + Missense_Mutation SNP G G C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPA 140885 broad.mit.edu 37 20 1902301 1902301 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIRPA 140885 hgsc.bcm.edu 37 20 1895842 1895842 + Silent SNP T T C rs17853847 bycluster;byfrequency;by1000genomes TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPA 140885 hgsc.bcm.edu 37 20 1896052 1896054 + In_Frame_Del DEL CGA CGA - rs139878822 bycluster;by1000genomes TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIRPA 140885 hgsc.bcm.edu 37 20 1896052 1896054 + In_Frame_Del DEL CGA CGA - rs139878822 bycluster;by1000genomes TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPA 140885 hgsc.bcm.edu;ucsc.edu 37 20 1896052 1896054 + In_Frame_Del DEL CGA CGA - rs139878822 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 CGA CGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPB1 10326 broad.mit.edu 37 20 1585397 1585397 + Intron SNP T C C rs148754551 by1000genomes TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIRPB1 10326 broad.mit.edu 37 20 1585397 1585397 + Intron SNP T C C rs148754551 by1000genomes TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIRPB1 10326 broad.mit.edu 37 20 1585397 1585397 + Intron SNP T C C rs148754551 by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIRPB1 10326 broad.mit.edu 37 20 1585446 1585446 + Intron SNP G A A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIRPB1 10326 broad.mit.edu;hgsc.bcm.edu 37 20 1552666 1552666 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPB2 284759 broad.mit.edu;hgsc.bcm.edu 37 20 1460664 1460664 + Silent SNP G G T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPB2 284759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1460670 1460670 + Silent SNP T T C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPD 128646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1532510 1532510 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRPG 55423 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1616066 1616066 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT1 23411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69651246 69651246 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT1 23411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69651247 69651247 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT1 23411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69676090 69676091 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT1 23411 hgsc.bcm.edu;ucsc.edu 37 10 69672600 69672600 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT3 23410 broad.mit.edu 37 11 216647 216647 + 3'UTR SNP G A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIRT4 23409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120741603 120741603 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT5 23408 hgsc.bcm.edu 37 6 13601129 13601129 + Missense_Mutation SNP G G A rs146449652 unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SIRT6 51548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4180866 4180866 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIRT7 51547 broad.mit.edu 37 17 79875994 79875994 + Missense_Mutation SNP C T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIVA1 10572 broad.mit.edu 37 14 105225849 105225849 + 3'UTR SNP C G G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIX1 6495 hgsc.bcm.edu 37 14 61113204 61113204 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIX3 6496 broad.mit.edu 37 2 45169041 45169042 + 5'UTR DEL GT - - rs142044497 bycluster;by1000genomes TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SIX3 6496 broad.mit.edu;hgsc.bcm.edu 37 2 45171737 45171737 + Silent SNP C C A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIX4 51804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 61190108 61190108 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SIX6 4990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 60977812 60977812 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA1 220134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47906545 47906545 + Silent SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA1 220134 broad.mit.edu 37 18 47918722 47918723 + 3'UTR INS - T T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SKA1 220134 broad.mit.edu 37 18 47918723 47918723 + 3'UTR DEL T - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SKA2 348235 broad.mit.edu;hgsc.bcm.edu 37 17 57232526 57232526 + 5'UTR SNP T T C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA3 221150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21742170 21742170 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA3 221150 hgsc.bcm.edu 37 13 21742124 21742124 + Intron SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA3 221150 hgsc.bcm.edu 37 13 21746601 21746601 + Frame_Shift_Del DEL G G - rs151272242 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA3 221150 hgsc.bcm.edu 37 13 21746645 21746645 + Splice_Site SNP T T G novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKA3 221150 broad.mit.edu 37 13 21729086 21729086 + 3'UTR SNP G A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SKAP2 8935 hgsc.bcm.edu 37 7 26765559 26765559 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SKI 6497 broad.mit.edu;hgsc.bcm.edu 37 1 2234822 2234822 + Silent SNP G G A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIL 6498 broad.mit.edu 37 3 170110419 170110420 + 3'UTR DEL AA - - rs148572147 bycluster;by1000genomes TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SKIL 6498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170078221 170078221 + Silent SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIL 6498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170110164 170110164 + Missense_Mutation SNP A A C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L2 23517 broad.mit.edu 37 5 54603687 54603687 + 5'UTR DEL A - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SKIV2L2 23517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54618206 54618206 + Silent SNP T T C novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L2 23517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54701366 54701366 + Silent SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L2 23517 hgsc.bcm.edu;ucsc.edu 37 5 54645468 54645468 + Silent SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SKIV2L 6499 broad.mit.edu;hgsc.bcm.edu 37 6 31928014 31928014 + Missense_Mutation SNP C C T rs146717555 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L 6499 broad.mit.edu;hgsc.bcm.edu 37 6 31930533 31930533 + Silent SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L 6499 broad.mit.edu;hgsc.bcm.edu 37 6 31932019 31932019 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L 6499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31928300 31928300 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SKIV2L 6499 hgsc.bcm.edu 37 6 31926997 31926997 + Intron SNP G G T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SKIV2L 6499 hgsc.bcm.edu 37 6 31930351 31930351 + Silent SNP A A G rs2734331 bycluster;byfrequency TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SKP1 6500 broad.mit.edu 37 5 133493645 133493645 + Intron SNP T C C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SKP2 6502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36177323 36177323 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLA2 84174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 35261962 35261962 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLA 6503 broad.mit.edu 37 8 134060024 134060024 + Intron SNP A G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLA 6503 broad.mit.edu 37 8 134072581 134072581 + Intron SNP G C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLAMF1 6504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160607007 160607007 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLAMF7 57823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160718025 160718025 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLAMF7 57823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160719769 160719769 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLAMF8 56833 broad.mit.edu 37 1 159796590 159796590 + 5'UTR SNP A G G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLAMF9 89886 broad.mit.edu 37 1 159921403 159921403 + 3'UTR SNP G A A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLAMF9 89886 hgsc.bcm.edu;ucsc.edu 37 1 159922170 159922170 + Silent SNP G G T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC10A1 6554 broad.mit.edu;hgsc.bcm.edu 37 14 70242936 70242936 + 3'UTR SNP T T A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC10A2 6555 hgsc.bcm.edu 37 13 103718249 103718249 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC10A3 8273 broad.mit.edu 37 X 153715751 153715751 + 3'UTR DEL A - - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC10A3 8273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153716013 153716013 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC10A7 84068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 147438224 147438224 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC11A1 6556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219254723 219254723 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC11A2 4891 broad.mit.edu 37 12 51388601 51388601 + Intron DEL C - - rs11353962 bycluster TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC11A2 4891 hgsc.bcm.edu;ucsc.edu 37 12 51384633 51384636 + Frame_Shift_Del DEL AATG AATG - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 AATG AATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A1 6557 hgsc.bcm.edu;ucsc.edu 37 15 48521422 48521422 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A2 6558 broad.mit.edu 37 5 127503597 127503597 + Intron SNP G T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC12A2 6558 broad.mit.edu 37 5 127503598 127503598 + Intron SNP A T T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC12A2 6558 broad.mit.edu 37 5 127503766 127503767 + Intron DEL AT - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC12A2 6558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127466804 127466804 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A2 6558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127497486 127497486 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A2 6558 broad.mit.edu;ucsc.edu 37 5 127488499 127488499 + Splice_Site SNP T G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC12A2 6558 hgsc.bcm.edu;ucsc.edu 37 5 127477609 127477609 + Nonsense_Mutation SNP T T G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A3 6559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56904064 56904064 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A3 6559 hgsc.bcm.edu 37 16 56912081 56912081 + Splice_Region SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A3 6559 hgsc.bcm.edu;ucsc.edu 37 16 56938335 56938335 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A4 6560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67979424 67979424 + Silent SNP C C A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A4 6560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67980916 67980916 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A4 6560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67983803 67983803 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A4 6560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67983804 67983804 + Missense_Mutation SNP C C A rs184951084 by1000genomes TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A5 57468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44663593 44663593 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A5 57468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44669098 44669098 + Silent SNP C C T novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A5 57468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44684805 44684805 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A5 57468 hgsc.bcm.edu 37 20 44680323 44680323 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A5 57468 hgsc.bcm.edu 37 20 44686173 44686173 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A5 57468 hgsc.bcm.edu;ucsc.edu 37 20 44684789 44684789 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC12A6 9990 broad.mit.edu;hgsc.bcm.edu 37 15 34546785 34546785 + Silent SNP A A G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A6 9990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34544539 34544539 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SLC12A6 9990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34547536 34547536 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A7 10723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1065466 1065466 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A7 10723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1073766 1073766 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A8 84561 broad.mit.edu 37 3 124906161 124906161 + Missense_Mutation SNP C T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC12A8 84561 hgsc.bcm.edu 37 3 124815685 124815685 + Intron SNP G G T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A9 56996 broad.mit.edu 37 7 100459452 100459452 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC12A9 56996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100463346 100463346 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC12A9 56996 hgsc.bcm.edu 37 7 100459532 100459532 + Silent SNP C C T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC13A1 6561 hgsc.bcm.edu;ucsc.edu 37 7 122757654 122757654 + Silent SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A2 9058 broad.mit.edu 37 17 26820958 26820958 + Intron SNP C T T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC13A2 9058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26820678 26820678 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A2 9058 hgsc.bcm.edu 37 17 26817926 26817926 + Splice_Site SNP T T G novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC13A2 9058 hgsc.bcm.edu 37 17 26822695 26822696 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A2 9058 hgsc.bcm.edu 37 17 26822695 26822696 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A3 64849 broad.mit.edu 37 20 45192249 45192249 + Intron SNP A G G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC13A3 64849 broad.mit.edu 37 20 45192253 45192254 + Intron INS - A A rs59207395 unknown;alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC13A3 64849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45192089 45192089 + Silent SNP G G A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A3 64849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45239178 45239178 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A3 64849 hgsc.bcm.edu;ucsc.edu 37 20 45204226 45204226 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC13A3 64849 hgsc.bcm.edu;ucsc.edu 37 20 45231200 45231200 + Intron SNP A A C novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC13A3 64849 hgsc.bcm.edu;ucsc.edu 37 20 45241854 45241854 + Intron SNP G G A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC13A4 26266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135370277 135370277 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A4 26266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135370372 135370372 + Silent SNP C C T novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC13A5 284111 broad.mit.edu 37 17 6588299 6588300 + 3'UTR INS - C C rs3214215 bycluster;by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC13A5 284111 broad.mit.edu 37 17 6589398 6589398 + 3'UTR SNP T G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC13A5 284111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6594203 6594203 + Silent SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC14A2 8170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43212331 43212331 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC14A2 8170 hgsc.bcm.edu 37 18 43246952 43246952 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC14A2 8170 hgsc.bcm.edu 37 18 43258985 43258985 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC14A2 8170 hgsc.bcm.edu;ucsc.edu 37 18 43246949 43246949 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC14A2 8170 hgsc.bcm.edu;ucsc.edu 37 18 43249307 43249307 + Silent SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC15A1 6564 broad.mit.edu 37 13 99336799 99336800 + 3'UTR INS - A A rs66659825 unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC15A1 6564 broad.mit.edu 37 13 99336799 99336800 + 3'UTR INS - A A rs66659825 unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC15A1 6564 broad.mit.edu 37 13 99336799 99336800 + 3'UTR INS - A A rs66659825 unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC15A1 6564 broad.mit.edu 37 13 99336799 99336800 + 3'UTR INS - A A rs66659825 unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC15A1 6564 broad.mit.edu;ucsc.edu 37 13 99361816 99361824 + Splice_Site DEL CGTCACCTA - - novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 CGTCACCTA CGTCACCTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC15A2 6565 broad.mit.edu;hgsc.bcm.edu 37 3 121613330 121613330 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A2 6565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121647359 121647359 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A2 6565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121659238 121659238 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A2 6565 hgsc.bcm.edu 37 3 121613338 121613338 + Silent SNP G G A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC15A3 51296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60709539 60709539 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A3 51296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60711236 60711236 + Silent SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A3 51296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60714170 60714170 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A3 51296 broad.mit.edu;ucsc.edu 37 11 60709588 60709588 + Silent SNP A C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC15A4 121260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129285429 129285430 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A4 121260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129293991 129293991 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A4 121260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129293993 129293993 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC15A4 121260 hgsc.bcm.edu;ucsc.edu 37 12 129278856 129278856 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC15A5 729025 hgsc.bcm.edu;ucsc.edu 37 12 16410792 16410792 + Silent SNP G G A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A10 117247 broad.mit.edu 37 6 111499630 111499630 + Intron SNP A C C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC16A11 162515 broad.mit.edu 37 17 6946682 6946682 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC16A14 151473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 230910577 230910577 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A14 151473 hgsc.bcm.edu 37 2 230911157 230911157 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A14 151473 hgsc.bcm.edu 37 2 230923815 230923815 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A14 151473 hgsc.bcm.edu;ucsc.edu 37 2 230914571 230914571 + Silent SNP C C G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A1 6566 broad.mit.edu 37 1 113466326 113466326 + Intron SNP C T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC16A1 6566 hgsc.bcm.edu;ucsc.edu 37 1 113460278 113460279 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A3 9123 broad.mit.edu;ucsc.edu 37 17 80194627 80194627 + Silent SNP G C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC16A3 9123 hgsc.bcm.edu 37 17 80195666 80195666 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A4 9122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110906399 110906399 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A4 9122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110921782 110921782 + Silent SNP A A C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A4 9122 hgsc.bcm.edu;ucsc.edu 37 1 110921820 110921820 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A4 9122 hgsc.bcm.edu;ucsc.edu 37 1 110923620 110923623 + Frame_Shift_Del DEL ATCT ATCT - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 ATCT ATCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A5 9121 broad.mit.edu;hgsc.bcm.edu 37 17 73096901 73096901 + Silent SNP A A T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A5 9121 hgsc.bcm.edu 37 17 73096580 73096580 + Silent SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A6 9120 hgsc.bcm.edu;ucsc.edu 37 17 66268860 66268860 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A7 9194 hgsc.bcm.edu 37 12 60165123 60165123 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A7 9194 hgsc.bcm.edu;ucsc.edu 37 12 60169209 60169209 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC16A8 23539 broad.mit.edu;hgsc.bcm.edu 37 22 38476983 38476983 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A9 220963 broad.mit.edu 37 10 61411980 61411983 + 3'UTR DEL AAAA - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 AAAA AAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC16A9 220963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61414026 61414026 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A9 220963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61432539 61432539 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A9 220963 hgsc.bcm.edu 37 10 61412636 61412653 + In_Frame_Del DEL CCTCCCAGCAGGACGCAG CCTCCCAGCAGGACGCAG - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 CCTCCCAGCAGGACGCAG CCTCCCAGCAGGACGCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A9 220963 hgsc.bcm.edu 37 10 61412636 61412653 + In_Frame_Del DEL CCTCCCAGCAGGACGCAG CCTCCCAGCAGGACGCAG - novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 CCTCCCAGCAGGACGCAG CCTCCCAGCAGGACGCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC16A9 220963 hgsc.bcm.edu;ucsc.edu 37 10 61443944 61443944 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC17A1 6568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25811911 25811911 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A1 6568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25830753 25830753 + Silent SNP T T C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A1 6568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25830810 25830810 + 5'UTR SNP T T C novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A1 6568 hgsc.bcm.edu 37 6 25801166 25801166 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC17A1 6568 hgsc.bcm.edu 37 6 25813151 25813151 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC17A2 10246 broad.mit.edu 37 6 25926075 25926075 + 5'UTR SNP C T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC17A2 10246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25913557 25913557 + Nonsense_Mutation SNP A A C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A2 10246 hgsc.bcm.edu;ucsc.edu 37 6 25923943 25923943 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC17A3 10786 broad.mit.edu 37 6 25850416 25850416 + Intron SNP A G G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC17A3 10786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25850134 25850134 + Silent SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A4 10050 broad.mit.edu 37 6 25777032 25777032 + Intron SNP T A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC17A4 10050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25770630 25770630 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A4 10050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25779371 25779371 + Silent SNP A A T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A5 26503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 74354149 74354149 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A6 57084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22364813 22364813 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A6 57084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22364829 22364829 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A6 57084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22397548 22397548 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A6 57084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22397594 22397594 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A6 57084 hgsc.bcm.edu;ucsc.edu 37 11 22381043 22381043 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC17A7 57030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49934326 49934326 + Silent SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A8 246213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100813894 100813894 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC17A8 246213 hgsc.bcm.edu 37 12 100796248 100796248 + Silent SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC17A9 63910 broad.mit.edu 37 20 61594983 61594983 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC18A1 6570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 20038369 20038369 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC18A2 6571 hgsc.bcm.edu 37 10 119029905 119029905 + Silent SNP G G T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC18A3 6572 broad.mit.edu;ucsc.edu 37 10 50819157 50819157 + Missense_Mutation SNP T G G rs142721677 unknown;alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC19A1 6573 broad.mit.edu 37 21 46935342 46935343 + 3'UTR INS - C C rs79857623 bycluster;by1000genomes TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC19A1 6573 broad.mit.edu 37 21 46935481 46935481 + 3'UTR SNP C A A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC19A1 6573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46951439 46951439 + Silent SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC19A1 6573 hgsc.bcm.edu 37 21 46935726 46935726 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC19A2 10560 hgsc.bcm.edu;ucsc.edu 37 1 169437458 169437458 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC19A3 80704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228563604 228563604 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC19A3 80704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228564091 228564091 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC19A3 80704 broad.mit.edu;ucsc.edu 37 2 228560780 228560780 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC1A1 6505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 4576614 4576614 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC1A2 6506 broad.mit.edu 37 11 35282111 35282111 + 3'UTR DEL G - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC1A2 6506 broad.mit.edu 37 11 35282252 35282252 + 3'UTR SNP T C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC1A2 6506 hgsc.bcm.edu 37 11 35440489 35440489 + Splice_Region SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC1A4 6509 broad.mit.edu 37 2 65217245 65217245 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC1A5 6510 broad.mit.edu 37 19 47290655 47290655 + Intron SNP A C C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC1A5 6510 broad.mit.edu;hgsc.bcm.edu 37 19 47278747 47278747 + 3'UTR SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC1A5 6510 broad.mit.edu;hgsc.bcm.edu 37 19 47285647 47285647 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC1A6 6511 broad.mit.edu 37 19 15072683 15072683 + Intron SNP G A A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC1A7 6512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53608095 53608095 + Silent SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC1A7 6512 hgsc.bcm.edu 37 1 53600011 53600011 + Intron SNP C C T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC1A7 6512 hgsc.bcm.edu 37 1 53608000 53608000 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC20A1 6574 hgsc.bcm.edu;ucsc.edu 37 2 113420443 113420443 + Silent SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC20A2 6575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 42317465 42317465 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A10 387775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63057715 63057715 + Silent SNP C C G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A10 387775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63059039 63059039 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A11 55867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64337144 64337144 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A11 55867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64338518 64338518 + 3'UTR SNP T T C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A11 55867 hgsc.bcm.edu;ucsc.edu 37 11 64326672 64326672 + Silent SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A12 116085 broad.mit.edu;hgsc.bcm.edu 37 11 64360346 64360346 + Silent SNP C C A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A12 116085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64368297 64368297 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A12 116085 hgsc.bcm.edu 37 11 64368939 64368939 + Intron SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A13 9390 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38307442 38307442 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A15 55356 hgsc.bcm.edu 37 1 116534699 116534699 + Silent SNP G G C novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A16 85413 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110763477 110763477 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A16 85413 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110763747 110763747 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A16 85413 hgsc.bcm.edu;ucsc.edu 37 6 110757118 110757118 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A18 5002 hgsc.bcm.edu 37 11 2946407 2946407 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A20 440044 hgsc.bcm.edu 37 11 64988531 64988531 + RNA SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A20 440044 hgsc.bcm.edu;ucsc.edu 37 11 64985140 64985140 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A23 63027 broad.mit.edu 37 6 3284081 3284081 + Intron SNP C T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A24 283238 broad.mit.edu 37 11 62886306 62886306 + Intron SNP A C C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A25 387601 broad.mit.edu 37 11 62933774 62933774 + Intron SNP C G G rs2226866 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A25 387601 hgsc.bcm.edu 37 11 62984813 62984813 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A25 387601 hgsc.bcm.edu;ucsc.edu 37 11 62985134 62985134 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A2 6582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160668236 160668236 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A3 6581 broad.mit.edu 37 6 160875654 160875654 + 3'UTR DEL T - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A4 6583 broad.mit.edu 37 5 131630305 131630305 + 5'UTR SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A4 6583 broad.mit.edu 37 5 131630693 131630693 + Silent SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A4 6583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131671519 131671519 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A4 6583 hgsc.bcm.edu 37 5 131662999 131662999 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A4 6583 hgsc.bcm.edu;ucsc.edu 37 5 131662990 131662990 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A5 6584 hgsc.bcm.edu 37 5 131705726 131705728 + In_Frame_Del DEL TCT TCT - novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 TCT TCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A6 9356 broad.mit.edu 37 11 62744178 62744178 + 3'UTR SNP A G G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A6 9356 broad.mit.edu 37 11 62751897 62751897 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A6 9356 broad.mit.edu 37 11 62752225 62752225 + 5'UTR SNP C T T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A6 9356 broad.mit.edu;hgsc.bcm.edu 37 11 62744780 62744780 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A6 9356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62744739 62744739 + Silent SNP A A G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A6 9356 hgsc.bcm.edu 37 11 62744692 62744693 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A6 9356 hgsc.bcm.edu;ucsc.edu 37 11 62751128 62751128 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A6 9356 hgsc.bcm.edu;ucsc.edu 37 11 62751877 62751877 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A7 10864 broad.mit.edu 37 6 43272019 43272019 + Intron SNP A G G novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A7 10864 broad.mit.edu 37 6 43272209 43272209 + Intron SNP T C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A7 10864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43267765 43267765 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A7 10864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43272449 43272449 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A7 10864 hgsc.bcm.edu 37 6 43271898 43271898 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC22A8 9376 broad.mit.edu 37 11 62762525 62762525 + Intron DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A8 9376 broad.mit.edu 37 11 62763073 62763074 + Intron INS - T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC22A8 9376 broad.mit.edu;hgsc.bcm.edu 37 11 62760819 62760819 + Intron SNP A A G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A8 9376 broad.mit.edu;hgsc.bcm.edu 37 11 62760889 62760889 + Intron SNP G G C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A8 9376 hgsc.bcm.edu;ucsc.edu 37 11 62762194 62762195 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A8 9376 hgsc.bcm.edu;ucsc.edu 37 11 62782189 62782189 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A8 9376 hgsc.bcm.edu;ucsc.edu 37 11 62782211 62782211 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A9 114571 broad.mit.edu;hgsc.bcm.edu 37 11 63175588 63175588 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A9 114571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63141417 63141418 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A9 114571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63175623 63175623 + Nonsense_Mutation SNP T T A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC22A9 114571 hgsc.bcm.edu 37 11 63137795 63137796 + In_Frame_Ins INS - - CGCGCG novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC23A1 9963 broad.mit.edu 37 5 138715429 138715429 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC23A1 9963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138707793 138707793 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC23A1 9963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138713670 138713670 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC23A1 9963 hgsc.bcm.edu;ucsc.edu 37 5 138717642 138717642 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC23A2 9962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4839999 4839999 + Silent SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC23A2 9962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4880292 4880292 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC23A3 151295 broad.mit.edu;hgsc.bcm.edu 37 2 220034713 220034713 + 5'UTR SNP T T C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC23A3 151295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220033819 220033819 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A1 9187 broad.mit.edu;hgsc.bcm.edu 37 15 65945161 65945161 + Intron SNP A A T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A1 9187 hgsc.bcm.edu;ucsc.edu 37 15 65946267 65946267 + Silent SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC24A2 25769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 19550217 19550217 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A3 57419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 19665938 19665938 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A4 123041 broad.mit.edu 37 14 92915666 92915666 + Intron DEL A - - rs113450887 unknown;alternate_allele TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC24A4 123041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 92958092 92958092 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A5 283652 broad.mit.edu 37 15 48428659 48428659 + Intron DEL A - - rs146154262 unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC24A5 283652 broad.mit.edu 37 15 48428782 48428782 + Intron SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC24A5 283652 broad.mit.edu 37 15 48428782 48428782 + Intron SNP C A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC24A5 283652 broad.mit.edu 37 15 48428782 48428782 + Intron SNP C A A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC24A6 80024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113742186 113742186 + Silent SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A6 80024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113758188 113758188 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC24A6 80024 hgsc.bcm.edu 37 12 113737765 113737765 + Silent SNP T T G novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC24A6 80024 hgsc.bcm.edu;ucsc.edu 37 12 113742187 113742187 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A10 1468 broad.mit.edu 37 17 79687128 79687128 + 3'UTR SNP G C C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A12 8604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 172725235 172725235 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A13 10165 broad.mit.edu 37 7 95750406 95750406 + 3'UTR SNP T C C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A13 10165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 95776002 95776002 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A13 10165 hgsc.bcm.edu 37 7 95799395 95799395 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A13 10165 hgsc.bcm.edu;ucsc.edu 37 7 95952121 95952121 + upstream SNP T T C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A13(dist=161753) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 96113212 96113212 + IGR SNP C C A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A14 9016 broad.mit.edu 37 X 129498997 129499009 + Intron DEL ATCTAATAAGCAC - - rs67555915 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 ATCTAATAAGCAC ATCTAATAAGCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A14 9016 broad.mit.edu 37 X 129499386 129499386 + Intron SNP C T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A14 9016 broad.mit.edu 37 X 129507022 129507022 + 3'UTR SNP C A A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A14 9016 broad.mit.edu 37 X 129507022 129507022 + 3'UTR SNP C A A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A14 9016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129483276 129483276 + Silent SNP G G T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A14 9016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129499647 129499647 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A18 83733 broad.mit.edu 37 22 18073082 18073082 + 3'UTR SNP T G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A18 83733 broad.mit.edu;hgsc.bcm.edu 37 22 18070862 18070862 + Intron SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A19 60386 hgsc.bcm.edu 37 17 73279618 73279618 + Silent SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A20 788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48900024 48900024 + Silent SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A23 79085 broad.mit.edu;hgsc.bcm.edu 37 19 6444201 6444201 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A23 79085 hgsc.bcm.edu 37 19 6454351 6454351 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A23 79085 hgsc.bcm.edu;ucsc.edu 37 19 6444252 6444252 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A24 29957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 108700179 108700179 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A25 114789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130865982 130865982 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A25 114789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130868093 130868093 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A25 114789 hgsc.bcm.edu 37 9 130863618 130863618 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A26 115286 hgsc.bcm.edu 37 3 66421041 66421041 + Intron SNP G G C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A26 115286 hgsc.bcm.edu 37 3 66428112 66428112 + Splice_Site SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A2 83884 broad.mit.edu 37 5 140682221 140682221 + 3'UTR DEL G - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A2 83884 broad.mit.edu;ucsc.edu 37 5 140682821 140682821 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A2 83884 hgsc.bcm.edu;ucsc.edu 37 5 140682766 140682766 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A28 81894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101373512 101373512 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A30 253512 broad.mit.edu 37 13 45969907 45969907 + 3'UTR SNP A G G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A30 253512 broad.mit.edu 37 13 45971672 45971672 + Intron DEL A - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A31 83447 broad.mit.edu 37 4 128694815 128694815 + 3'UTR SNP G T T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A33 84275 broad.mit.edu;hgsc.bcm.edu 37 1 9642417 9642417 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A3 5250 broad.mit.edu 37 12 98989101 98989101 + Intron SNP T A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A3 5250 hgsc.bcm.edu;ucsc.edu 37 12 98995243 98995244 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A36 55186 broad.mit.edu 37 3 140695478 140695479 + 3'UTR INS - A A rs112628499 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A36 55186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 140675511 140675511 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A37 51312 broad.mit.edu 37 8 23429448 23429449 + 3'UTR INS - T T rs112442130 bycluster;by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A39 51629 broad.mit.edu 37 17 42397274 42397274 + 3'UTR SNP C A A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A40 55972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87483612 87483612 + Silent SNP T T C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A41 284427 broad.mit.edu 37 19 6426272 6426277 + 3'UTR DEL CAGCCT - - rs66673060 bycluster;by1000genomes TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 CAGCCT CAGCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A4 291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186066922 186066922 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A4 291 hgsc.bcm.edu 37 4 186067039 186067039 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A44 9673 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156169881 156169881 + Silent SNP C C A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A44 9673 hgsc.bcm.edu;ucsc.edu 37 1 156169866 156169866 + Silent SNP G G T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A45 283130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65144051 65144051 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A48 153328 broad.mit.edu;hgsc.bcm.edu 37 5 135207183 135207183 + Intron SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A5 292 broad.mit.edu 37 X 118605114 118605114 + 3'UTR SNP C A A rs75063279 byfrequency TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A5 292 broad.mit.edu 37 X 118605114 118605114 + 3'UTR SNP C A A rs75063279 byfrequency TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC25A5 292 hgsc.bcm.edu 37 X 118603864 118603864 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A5 292 hgsc.bcm.edu 37 X 118604409 118604409 + Silent SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A5 292 hgsc.bcm.edu 37 X 118604412 118604412 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A5 292 hgsc.bcm.edu 37 X 118605012 118605012 + Missense_Mutation SNP G G C rs80323990 byfrequency TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A5 292 hgsc.bcm.edu 37 X 118605023 118605023 + 3'UTR SNP T T G rs74343587 unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A5 292 hgsc.bcm.edu;ucsc.edu 37 X 118603864 118603864 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC25A5 292 hgsc.bcm.edu;ucsc.edu 37 X 118604409 118604409 + Silent SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC25A6 293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1505637 1505637 + Missense_Mutation SNP G G A rs143212891 unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A1 10861 broad.mit.edu 37 4 983003 983003 + Frame_Shift_Del DEL T - - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78196524 78196524 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78196561 78196561 + Missense_Mutation SNP C C G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78199688 78199688 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78215586 78215586 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A11 284129 hgsc.bcm.edu 37 17 78221983 78221983 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC26A4 5172 broad.mit.edu;hgsc.bcm.edu 37 7 107329537 107329537 + Silent SNP G G A rs140778437 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A4 5172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107329537 107329537 + Silent SNP G G A rs140778437 unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A4 5172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107334908 107334908 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A4 5172 hgsc.bcm.edu;ucsc.edu 37 7 107335133 107335133 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC26A5 375611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 103033397 103033397 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A5 375611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 103048401 103048401 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A5 375611 hgsc.bcm.edu;ucsc.edu 37 7 103018052 103018052 + Silent SNP C C A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A7 115111 broad.mit.edu 37 8 92406637 92406637 + Intron SNP T G G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC26A8 116369 broad.mit.edu 37 6 35922767 35922767 + Intron SNP T C C novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC26A8 116369 broad.mit.edu;hgsc.bcm.edu 37 6 35922941 35922941 + Silent SNP G G A rs193054248 by1000genomes;alternate_allele TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A8 116369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35987387 35987387 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC26A8 116369 hgsc.bcm.edu 37 6 35922962 35922962 + Silent SNP G G A novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC26A9 115019 hgsc.bcm.edu;ucsc.edu 37 1 205886496 205886496 + Intron SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC27A1 376497 broad.mit.edu;hgsc.bcm.edu 37 19 17611525 17611525 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC27A1 376497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17611618 17611618 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC27A2 11001 hgsc.bcm.edu 37 15 50474899 50474900 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC27A3 11000 hgsc.bcm.edu 37 1 153750666 153750666 + Silent SNP G G T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC27A5 10998 broad.mit.edu;hgsc.bcm.edu 37 19 59011001 59011001 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC27A5 10998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 59010218 59010218 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC27A5 10998 hgsc.bcm.edu;ucsc.edu 37 19 59012065 59012065 + Silent SNP C C T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC27A6 28965 broad.mit.edu;hgsc.bcm.edu 37 5 128302249 128302249 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SLC27A6 28965 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 128351731 128351731 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SLC27A6 28965 broad.mit.edu;ucsc.edu 37 5 128321007 128321007 + Silent SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx SLC27A6 28965 hgsc.bcm.edu;ucsc.edu 37 5 128302059 128302059 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID SLC27A6 28965 hgsc.bcm.edu;ucsc.edu 37 5 128368807 128368807 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID SLC27A6 28965 hgsc.bcm.edu;ucsc.edu 37 5 128368959 128368959 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM SOLID SLC28A1 9154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85488371 85488371 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC28A1 9154 hgsc.bcm.edu 37 15 85438168 85438168 + Splice_Region SNP C C G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC28A1 9154 hgsc.bcm.edu 37 15 85438311 85438312 + In_Frame_Ins INS - - TTG rs75301511 unknown;alternate_allele TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC28A1 9154 hgsc.bcm.edu 37 15 85451987 85451987 + Silent SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC28A2 9153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45559654 45559654 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC28A2 9153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45559673 45559673 + Silent SNP C C A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC28A3 64078 hgsc.bcm.edu 37 9 86894964 86894964 + Missense_Mutation SNP C C G rs11568398 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC29A1 2030 broad.mit.edu 37 6 44200593 44200593 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC29A1 2030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44197391 44197391 + Silent SNP C C T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC29A1 2030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44198152 44198152 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC29A2 3177 broad.mit.edu 37 11 66130881 66130881 + 3'UTR SNP C A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC29A2 3177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66136951 66136951 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC29A3 55315 broad.mit.edu 37 10 73121852 73121852 + Silent SNP G A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC29A3 55315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73111405 73111405 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC29A4 222962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5330777 5330777 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A10 81031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45355557 45355557 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A11 66035 broad.mit.edu 37 22 24199260 24199260 + Intron DEL T - - rs142749648 by1000genomes TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A11 66035 broad.mit.edu 37 22 24199261 24199261 + Intron DEL G - - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A11 66035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24226915 24226915 + Missense_Mutation SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A11 66035 hgsc.bcm.edu;ucsc.edu 37 22 24226035 24226036 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A12 154091 broad.mit.edu 37 6 134312046 134312046 + 3'UTR DEL T - - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A13 114134 broad.mit.edu 37 12 40153653 40153654 + 3'UTR INS - A A novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A13 114134 broad.mit.edu 37 12 40223646 40223646 + Intron DEL A - - novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A14 144195 broad.mit.edu;hgsc.bcm.edu 37 12 7967026 7967026 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A14 144195 broad.mit.edu;hgsc.bcm.edu 37 12 7967042 7967042 + Missense_Mutation SNP C C T rs140568143 byfrequency TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A14 144195 broad.mit.edu;hgsc.bcm.edu 37 12 7967055 7967055 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A2 6514 hgsc.bcm.edu;ucsc.edu 37 3 170744467 170744467 + 5'UTR SNP G G C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC2A3 6515 broad.mit.edu 37 12 8082243 8082243 + Intron SNP C T T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A3 6515 broad.mit.edu 37 12 8082243 8082243 + Intron SNP C T T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A3 6515 broad.mit.edu 37 12 8082245 8082245 + Intron SNP T G G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A3 6515 broad.mit.edu 37 12 8082514 8082514 + Intron SNP C T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A3 6515 broad.mit.edu 37 12 8082586 8082586 + Intron DEL T - - novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A3 6515 broad.mit.edu;hgsc.bcm.edu 37 12 8083142 8083142 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A3 6515 hgsc.bcm.edu 37 12 8075533 8075533 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A3 6515 hgsc.bcm.edu;ucsc.edu 37 12 8074055 8074055 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC2A4 6517 broad.mit.edu 37 17 7190435 7190436 + 3'UTR DEL TT - - rs149352045 unknown;alternate_allele TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A4 6517 hgsc.bcm.edu;ucsc.edu 37 17 7186902 7186902 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC2A4RG 56731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62373331 62373331 + Silent SNP T T A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A5 6518 broad.mit.edu 37 1 9129703 9129703 + 5'UTR SNP A C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A5 6518 broad.mit.edu 37 1 9129703 9129703 + 5'UTR SNP A C C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A5 6518 broad.mit.edu 37 1 9129815 9129815 + 5'UTR DEL G - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC2A5 6518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9118229 9118229 + Silent SNP A A T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A6 11182 hgsc.bcm.edu;ucsc.edu 37 9 136340534 136340534 + Silent SNP G G A rs115835881 bycluster;byfrequency;by1000genomes TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A7 155184 hgsc.bcm.edu;ucsc.edu 37 1 9083076 9083076 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC2A8 29988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130167742 130167742 + Silent SNP A A G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A8 29988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130169437 130169437 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC2A9 56606 hgsc.bcm.edu 37 4 10027514 10027514 + Intron SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC2A9 56606 hgsc.bcm.edu 37 4 9922170 9922170 + Missense_Mutation SNP C C G rs73225891 bycluster;byfrequency;by1000genomes TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC30A10 55532 broad.mit.edu 37 1 220057507 220057507 + RNA DEL C - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC30A10 55532 broad.mit.edu 37 1 220091955 220091955 + Intron DEL T - - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC30A2 7780 broad.mit.edu;hgsc.bcm.edu 37 1 26370857 26370857 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC30A3 7781 broad.mit.edu 37 2 27480972 27480972 + Intron SNP C T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC30A5 64924 broad.mit.edu 37 5 68414420 68414420 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC30A6 55676 broad.mit.edu 37 2 32422862 32422862 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC30A8 169026 broad.mit.edu 37 8 118185004 118185004 + 3'UTR SNP G C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC30A8 169026 broad.mit.edu;hgsc.bcm.edu 37 8 118147534 118147534 + 5'UTR SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC30A8 169026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 118184908 118184909 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC30A9 10463 broad.mit.edu;hgsc.bcm.edu 37 4 42072678 42072678 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC31A2 1318 broad.mit.edu 37 9 115925356 115925356 + 3'UTR SNP C G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC32A1 140679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37356752 37356752 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC33A1 9197 broad.mit.edu 37 3 155545820 155545820 + Intron DEL A - - novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC33A1 9197 broad.mit.edu;hgsc.bcm.edu 37 3 155546088 155546088 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC33A1 9197 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 155571204 155571204 + Missense_Mutation SNP T T A rs148999356 unknown;alternate_allele TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC33A1 9197 hgsc.bcm.edu;ucsc.edu 37 3 155547594 155547594 + Silent SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC33A1 9197 hgsc.bcm.edu;ucsc.edu 37 3 155547678 155547678 + Silent SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC34A1 6569 broad.mit.edu 37 5 176825447 176825447 + 3'UTR SNP T C C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC34A1 6569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176825284 176825284 + Silent SNP C C A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC34A1 6569 hgsc.bcm.edu 37 5 176824836 176824836 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC34A1 6569 hgsc.bcm.edu;ucsc.edu 37 5 176813287 176813287 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC34A1 6569 hgsc.bcm.edu;ucsc.edu 37 5 176813524 176813526 + In_Frame_Del DEL CAG CAG - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 CAG CAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC34A1 6569 hgsc.bcm.edu;ucsc.edu 37 5 176815364 176815365 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC34A2 10568 hgsc.bcm.edu 37 4 25667856 25667856 + Silent SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC34A3 142680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140126522 140126522 + Splice_Site SNP A A T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC34A3 142680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140129157 140129157 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A1 10559 broad.mit.edu 37 6 88218629 88218629 + Intron SNP C G G novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35A1 10559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88210341 88210341 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A1 10559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88210968 88210968 + Silent SNP T T C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A1 10559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88218885 88218885 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A2 7355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48762340 48762340 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A3 23443 broad.mit.edu 37 1 100488064 100488064 + 3'UTR SNP T C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35A3 23443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100472612 100472612 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A4 113829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139946853 139946853 + Silent SNP T T C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35A4 113829 broad.mit.edu;ucsc.edu 37 5 139947164 139947164 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35A4 113829 hgsc.bcm.edu 37 5 139946945 139946946 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC35A5 55032 broad.mit.edu;ucsc.edu 37 3 112300127 112300127 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35A5 55032 hgsc.bcm.edu;ucsc.edu 37 3 112299395 112299396 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35B2 347734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44222678 44222678 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35B2 347734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44224429 44224429 + Silent SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35B2 347734 hgsc.bcm.edu 37 6 44223195 44223195 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC35B2 347734 hgsc.bcm.edu;ucsc.edu 37 6 44224154 44224154 + Silent SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC35B3 51000 broad.mit.edu 37 6 8413723 8413723 + 3'UTR SNP A G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35B3 51000 broad.mit.edu;hgsc.bcm.edu 37 6 8422803 8422803 + Silent SNP C C G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35B3 51000 broad.mit.edu;hgsc.bcm.edu 37 6 8422813 8422813 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35B3 51000 hgsc.bcm.edu;ucsc.edu 37 6 8417152 8417152 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35B4 84912 broad.mit.edu 37 7 133979173 133979173 + 3'UTR DEL A - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35D1 23169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67486082 67486082 + Silent SNP A A C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35D2 11046 broad.mit.edu 37 9 99113698 99113698 + Intron DEL G - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35D2 11046 hgsc.bcm.edu 37 9 99126831 99126831 + Missense_Mutation SNP A A G rs147633936 unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35E2B 728661 broad.mit.edu 37 1 1597429 1597429 + Missense_Mutation SNP G A A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35F3 148641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234454501 234454501 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35F3 148641 broad.mit.edu;ucsc.edu 37 1 234458836 234458836 + Silent SNP C T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC35F5 80255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 114500419 114500419 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC35F5 80255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 114512805 114512805 + Silent SNP A A C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC36A1 206358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150843145 150843145 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC36A1 206358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150853235 150853235 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC36A1 206358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150856274 150856274 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC36A1 206358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150867782 150867782 + Silent SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC36A1 206358 hgsc.bcm.edu 37 5 150847285 150847285 + Missense_Mutation SNP T T A rs144783326 unknown;alternate_allele TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC36A2 153201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150701632 150701632 + Silent SNP A A G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC36A2 153201 hgsc.bcm.edu;ucsc.edu 37 5 150704898 150704898 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC36A3 285641 hgsc.bcm.edu;ucsc.edu 37 5 150666901 150666901 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC37A1 54020 hgsc.bcm.edu 37 21 43962544 43962545 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC37A2 219855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124955896 124955896 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC37A3 84255 hgsc.bcm.edu;ucsc.edu 37 7 140035229 140035229 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC37A4 2542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118897701 118897701 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC37A4 2542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118899051 118899051 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC37A4 2542 hgsc.bcm.edu;ucsc.edu 37 11 118899998 118899998 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79220707 79220707 + Silent SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79257257 79257257 + Silent SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 hgsc.bcm.edu 37 17 79219501 79219503 + In_Frame_Del DEL ATG ATG - rs10569617 bycluster;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 ATG ATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 hgsc.bcm.edu 37 17 79225074 79225075 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 hgsc.bcm.edu 37 17 79225074 79225075 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 hgsc.bcm.edu 37 17 79225074 79225075 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A10 124565 hgsc.bcm.edu 37 17 79268692 79268692 + Silent SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC38A1 81539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46623010 46623010 + Silent SNP T T C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A2 54407 broad.mit.edu;hgsc.bcm.edu 37 12 46754841 46754841 + 3'UTR SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A2 54407 broad.mit.edu;hgsc.bcm.edu 37 12 46754875 46754875 + 3'UTR SNP T T G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A2 54407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46760917 46760917 + Silent SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A2 54407 hgsc.bcm.edu;ucsc.edu 37 12 46760866 46760866 + Silent SNP G G A rs36022751 bycluster;byfrequency;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC38A6 145389 hgsc.bcm.edu 37 14 61509940 61509940 + Splice_Region SNP T T G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC38A7 55238 broad.mit.edu 37 16 58705890 58705890 + Intron SNP C T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC38A8 146167 broad.mit.edu 37 16 84050801 84050801 + Silent SNP C A A novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC38A8 146167 broad.mit.edu 37 16 84063144 84063144 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC38A8 146167 hgsc.bcm.edu;ucsc.edu 37 16 84066953 84066953 + Missense_Mutation SNP G G C rs142587413 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC38A9 153129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54965131 54965131 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A10 57181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196545178 196545178 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A10 57181 hgsc.bcm.edu;ucsc.edu 37 2 196545001 196545001 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A10 57181 hgsc.bcm.edu;ucsc.edu 37 2 196548615 196548615 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A10 57181 hgsc.bcm.edu;ucsc.edu 37 2 196593015 196593015 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC39A12 221074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 18250701 18250701 + Silent SNP G G A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A12 221074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 18276482 18276482 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A12 221074 hgsc.bcm.edu 37 10 18280180 18280180 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC39A1 27173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153932643 153932643 + Silent SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A1 27173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153934708 153934708 + Silent SNP G G T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A13 91252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47433931 47433931 + Silent SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A13 91252 hgsc.bcm.edu 37 11 47434010 47434010 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC39A3 29985 hgsc.bcm.edu;ucsc.edu 37 19 2737131 2737131 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A4 55630 broad.mit.edu 37 8 145642062 145642062 + Missense_Mutation SNP C T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC39A4 55630 hgsc.bcm.edu 37 8 145638895 145638895 + Splice_Site SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC39A5 283375 hgsc.bcm.edu 37 12 56630175 56630175 + Splice_Region SNP T T C rs188987976 by1000genomes TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC39A6 25800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33689577 33689577 + Silent SNP G G A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A6 25800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33694147 33694147 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A6 25800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33706569 33706569 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A6 25800 hgsc.bcm.edu 37 18 33706899 33706899 + Silent SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC39A7 7922 hgsc.bcm.edu;ucsc.edu 37 6 33169301 33169307 + Frame_Shift_Del DEL CCATGGC CCATGGC - novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 CCATGGC CCATGGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC39A7 7922 hgsc.bcm.edu;ucsc.edu 37 6 33171434 33171434 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC3A1 6519 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44507853 44507853 + Splice_Site SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC3A1 6519 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44547384 44547385 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC3A1 6519 hgsc.bcm.edu 37 2 44508564 44508564 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC3A2 6520 broad.mit.edu 37 11 62621293 62621293 + 5'Flank SNP T C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC3A2 6520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62650443 62650443 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC3A2 6520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62652670 62652670 + Silent SNP C C T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC3A2 6520 hgsc.bcm.edu;ucsc.edu 37 11 62650393 62650393 + Silent SNP T T C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC3A2 6520 hgsc.bcm.edu;ucsc.edu 37 11 62650410 62650410 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC40A1 30061 hgsc.bcm.edu;ucsc.edu 37 2 190428477 190428477 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC41A1 254428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205767800 205767800 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC41A2 84102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 105282811 105282811 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC41A2 84102 hgsc.bcm.edu;ucsc.edu 37 12 105239709 105239709 + Silent SNP A A G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC41A3 54946 broad.mit.edu 37 3 125725761 125725761 + Intron SNP T G G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC41A3 54946 hgsc.bcm.edu 37 3 125769795 125769795 + Silent SNP G G C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC41A3 54946 hgsc.bcm.edu;ucsc.edu 37 3 125725333 125725333 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC44A1 23446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 108147762 108147762 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A1 23446 hgsc.bcm.edu;ucsc.edu 37 9 108127774 108127774 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A1 23446 hgsc.bcm.edu;ucsc.edu 37 9 108128708 108128708 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A3 126969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 95357883 95357883 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A3 126969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 95360437 95360437 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A3 126969 broad.mit.edu;ucsc.edu 37 1 95286513 95286513 + Silent SNP A G G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC44A4 80736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31833744 31833744 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A5 204962 broad.mit.edu 37 1 76107489 76107489 + Intron SNP T C C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC44A5 204962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 75708659 75708659 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC44A5 204962 broad.mit.edu;ucsc.edu 37 1 75681492 75681492 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC44A5 204962 hgsc.bcm.edu 37 1 75805277 75805277 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC44A5 204962 hgsc.bcm.edu 37 1 75805277 75805277 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC45A1 50651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 8390936 8390936 + Silent SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC45A2 51151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33951772 33951772 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC45A3 85414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205632093 205632093 + Missense_Mutation SNP C C T rs138897809 unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC45A3 85414 hgsc.bcm.edu 37 1 205631992 205631992 + Silent SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC45A4 57210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142228421 142228421 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC46A1 113235 broad.mit.edu 37 17 26723137 26723137 + 3'UTR SNP G A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC46A1 113235 hgsc.bcm.edu;ucsc.edu 37 17 26727778 26727778 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC46A3 283537 broad.mit.edu 37 13 29274923 29274924 + 3'UTR INS - TT TT novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC46A3 283537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29275084 29275084 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC46A3 283537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29287320 29287320 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC47A1 55244 broad.mit.edu;ucsc.edu 37 17 19470436 19470436 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC47A1 55244 hgsc.bcm.edu;ucsc.edu 37 17 19451355 19451355 + Missense_Mutation SNP G G T rs150632967 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC47A2 146802 broad.mit.edu 37 17 19611861 19611861 + Intron SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC47A2 146802 broad.mit.edu;hgsc.bcm.edu 37 17 19582221 19582221 + Splice_Site SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC47A2 146802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19610039 19610039 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC47A2 146802 broad.mit.edu;ucsc.edu 37 17 19619790 19619790 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC47A2 146802 hgsc.bcm.edu;ucsc.edu 37 17 19606416 19606416 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC48A1 55652 hgsc.bcm.edu;ucsc.edu 37 12 48172917 48172917 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC48A1 55652 hgsc.bcm.edu;ucsc.edu 37 12 48174657 48174657 + 3'UTR SNP G G C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A10 57282 broad.mit.edu 37 2 162840664 162840664 + 3'UTR DEL G - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC4A10 57282 broad.mit.edu;hgsc.bcm.edu 37 2 162730485 162730485 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A10 57282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162661045 162661046 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A10 57282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162696378 162696378 + Silent SNP A A G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A10 57282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162815017 162815017 + Silent SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A10 57282 hgsc.bcm.edu 37 2 162799352 162799352 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A10 57282 hgsc.bcm.edu;ucsc.edu 37 2 162821636 162821636 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A11 83959 broad.mit.edu;ucsc.edu 37 20 3211240 3211240 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC4A11 83959 hgsc.bcm.edu 37 20 3210301 3210301 + Silent SNP G G A rs41281860 bycluster;byfrequency;by1000genomes TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A1 6521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42328875 42328875 + Missense_Mutation SNP G G A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A1 6521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42333125 42333125 + Silent SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A1 6521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42335974 42335974 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A1 6521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42338113 42338113 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A1 6521 hgsc.bcm.edu 37 17 42328876 42328876 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A1AP 22950 broad.mit.edu;hgsc.bcm.edu 37 2 27908052 27908052 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A1AP 22950 hgsc.bcm.edu 37 2 27887264 27887264 + Silent SNP C C T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A1AP 22950 hgsc.bcm.edu 37 2 27908054 27908054 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A2 6522 broad.mit.edu 37 7 150771996 150771996 + Intron SNP G T T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC4A2 6522 hgsc.bcm.edu 37 7 150769065 150769065 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A2 6522 hgsc.bcm.edu 37 7 150772527 150772527 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A2 6522 hgsc.bcm.edu;ucsc.edu 37 7 150771368 150771369 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A3 6508 broad.mit.edu;hgsc.bcm.edu 37 2 220497001 220497001 + Silent SNP C C T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A3 6508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220493280 220493280 + Missense_Mutation SNP C C T rs150796797 byfrequency TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A3 6508 broad.mit.edu;ucsc.edu 37 2 220502504 220502504 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC4A3 6508 hgsc.bcm.edu 37 2 220497112 220497112 + Silent SNP T T C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A4 8671 hgsc.bcm.edu 37 4 72313420 72313420 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A4 8671 hgsc.bcm.edu 37 4 72400063 72400063 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A4 8671 hgsc.bcm.edu 37 4 72423512 72423512 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A4 8671 hgsc.bcm.edu;ucsc.edu 37 4 72338634 72338634 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A5 57835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74477471 74477471 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A7 9497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27442256 27442256 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A7 9497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27451006 27451006 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC4A7 9497 hgsc.bcm.edu 37 3 27463253 27463253 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A7 9497 hgsc.bcm.edu;ucsc.edu 37 3 27498200 27498200 + 5'UTR SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A8 9498 broad.mit.edu;ucsc.edu 37 12 51897852 51897852 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC4A8 9498 hgsc.bcm.edu 37 12 51851247 51851247 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A8 9498 hgsc.bcm.edu 37 12 51851247 51851247 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A8 9498 hgsc.bcm.edu 37 12 51868167 51868167 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC4A9 83697 hgsc.bcm.edu 37 5 139747071 139747071 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC5A10 125206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18863863 18863863 + Silent SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A10 125206 broad.mit.edu;ucsc.edu 37 17 18874338 18874338 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A11 115584 broad.mit.edu;hgsc.bcm.edu 37 16 24921753 24921753 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A11 115584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24869990 24869990 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A11 115584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24920266 24920266 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A11 115584 broad.mit.edu;ucsc.edu 37 16 24918068 24918068 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A11 115584 broad.mit.edu;ucsc.edu 37 16 24920271 24920271 + Missense_Mutation SNP G C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A12 159963 broad.mit.edu 37 11 26743355 26743359 + 5'UTR DEL GAGAG - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 GAGAG GAGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A12 159963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26694953 26694953 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A12 159963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26695022 26695022 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A12 159963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26718743 26718743 + Silent SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A12 159963 hgsc.bcm.edu 37 11 26692591 26692591 + 3'UTR SNP A A T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A12 159963 hgsc.bcm.edu 37 11 26692591 26692591 + 3'UTR SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A12 159963 hgsc.bcm.edu;ucsc.edu 37 11 26720047 26720047 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC5A1 6523 broad.mit.edu 37 22 32439139 32439139 + 5'UTR SNP G T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A1 6523 broad.mit.edu 37 22 32506242 32506242 + 3'UTR SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A1 6523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32482294 32482294 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A2 6524 broad.mit.edu 37 16 31496212 31496212 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A2 6524 broad.mit.edu;hgsc.bcm.edu 37 16 31500191 31500191 + Intron SNP T T A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A2 6524 broad.mit.edu;hgsc.bcm.edu 37 16 31501699 31501699 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A3 6526 broad.mit.edu 37 21 35467345 35467345 + 5'UTR SNP A G G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A3 6526 broad.mit.edu 37 21 35467431 35467431 + 5'UTR SNP T G G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A3 6526 broad.mit.edu 37 21 35475730 35475732 + 3'UTR DEL ATA - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 ATA ATA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC5A3 6526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 35467806 35467806 + Silent SNP G G C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A3 6526 hgsc.bcm.edu 37 21 35469715 35469715 + 3'UTR SNP G G A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A3 6526 hgsc.bcm.edu;ucsc.edu 37 21 35468377 35468377 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A4 6527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32633231 32633231 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A6 8884 broad.mit.edu;hgsc.bcm.edu 37 2 27429797 27429797 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A7 60482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 108627273 108627273 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A8 160728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 101584327 101584327 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A8 160728 hgsc.bcm.edu 37 12 101560445 101560445 + Silent SNP G G T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC5A8 160728 hgsc.bcm.edu;ucsc.edu 37 12 101584299 101584299 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC5A9 200010 hgsc.bcm.edu;ucsc.edu 37 1 48694801 48694801 + Silent SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC6A10P 386757 broad.mit.edu 37 16 32890622 32890622 + Missense_Mutation SNP T G G rs689942 bycluster TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A10P 386757 broad.mit.edu 37 16 32890622 32890622 + Missense_Mutation SNP T G G rs689942 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A12 6539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 300301 300301 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A12 6539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 318976 318976 + Silent SNP G G C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A12 6539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 319083 319083 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A13 6540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 336752 336752 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A13 6540 hgsc.bcm.edu;ucsc.edu 37 12 335652 335652 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A14 11254 hgsc.bcm.edu 37 X 115572174 115572175 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A14 11254 hgsc.bcm.edu 37 X 115572174 115572175 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A15 55117 broad.mit.edu 37 12 85286086 85286086 + 5'UTR SNP A T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A15 55117 hgsc.bcm.edu 37 12 85257319 85257319 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC6A16 28968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49797187 49797187 + Silent SNP C C T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A16 28968 hgsc.bcm.edu;ucsc.edu 37 19 49793633 49793633 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC6A1 6529 broad.mit.edu 37 3 11078671 11078671 + 3'UTR SNP A C C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A1 6529 hgsc.bcm.edu;ucsc.edu 37 3 11067963 11067963 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC6A17 388662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110709686 110709686 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A17 388662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110740166 110740166 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A17 388662 broad.mit.edu;ucsc.edu 37 1 110709707 110709708 + Frame_Shift_Del DEL GG - - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A18 348932 broad.mit.edu;hgsc.bcm.edu 37 5 1232438 1232438 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A19 340024 broad.mit.edu 37 5 1222213 1222214 + 3'UTR DEL TG - - rs67714250 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A19 340024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1217053 1217053 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A20 54716 hgsc.bcm.edu;ucsc.edu 37 3 45817396 45817396 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC6A2 6530 hgsc.bcm.edu 37 16 55734212 55734212 + Silent SNP T T C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC6A3 6531 hgsc.bcm.edu;ucsc.edu 37 5 1443043 1443044 + Frame_Shift_Ins INS - - CACA novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A5 9152 broad.mit.edu 37 11 20676549 20676549 + 3'UTR SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A5 9152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20629130 20629130 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A5 9152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20676346 20676346 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A5 9152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20676347 20676347 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A7 6534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149583511 149583511 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A8 6535 broad.mit.edu 37 X 152954167 152954167 + Silent SNP C A A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC6A8 6535 broad.mit.edu;hgsc.bcm.edu 37 X 152956789 152956789 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC6A8 6535 hgsc.bcm.edu 37 X 152957540 152957540 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC7A10 56301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33702235 33702235 + Splice_Site SNP C C G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A11 23657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 139100476 139100476 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A11 23657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 139144404 139144404 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A13 157724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87229763 87229763 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A13 157724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87242198 87242198 + Silent SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A13 157724 hgsc.bcm.edu 37 8 87229702 87229702 + Silent SNP A A G rs4546639 bycluster;byfrequency;by1000genomes TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC7A14 57709 broad.mit.edu;hgsc.bcm.edu 37 3 170244556 170244556 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A14 57709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170185029 170185029 + Silent SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A14 57709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170198277 170198277 + Silent SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A1 6541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 30091722 30091722 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A1 6541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 30098300 30098300 + Silent SNP G G A rs138795948 byfrequency TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A2 6542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17409424 17409424 + Silent SNP G G A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A2 6542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17412117 17412117 + Silent SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A2 6542 hgsc.bcm.edu;ucsc.edu 37 8 17401011 17401011 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC7A3 84889 broad.mit.edu 37 X 70145508 70145508 + 3'UTR SNP A C C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A3 84889 broad.mit.edu;hgsc.bcm.edu 37 X 70148386 70148386 + Silent SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A3 84889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70147814 70147814 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A3 84889 broad.mit.edu;ucsc.edu 37 X 70147708 70147708 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A4 6545 broad.mit.edu 37 22 21385373 21385373 + Silent SNP G C C novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A4 6545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21385823 21385823 + Silent SNP C C T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A4 6545 hgsc.bcm.edu 37 22 21385634 21385634 + Silent SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC7A4 6545 hgsc.bcm.edu;ucsc.edu 37 22 21383473 21383473 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC7A5 8140 hgsc.bcm.edu 37 16 87885388 87885388 + Silent SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A5 8140 hgsc.bcm.edu;ucsc.edu 37 16 87871508 87871508 + Silent SNP G G A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC7A5P2 387254 broad.mit.edu 37 16 21531066 21531066 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A5P2 387254 broad.mit.edu 37 16 21531133 21531133 + Missense_Mutation SNP C G G rs518428 bycluster;by2hit2allele;byhapmap;by1000genomes TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A6 9057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68328656 68328656 + Silent SNP C C A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A8 23428 broad.mit.edu 37 14 23595988 23595988 + 3'UTR DEL C - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A8 23428 broad.mit.edu 37 14 23596350 23596350 + 3'UTR SNP G T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A8 23428 broad.mit.edu 37 14 23635685 23635685 + Silent SNP C A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A8 23428 broad.mit.edu;hgsc.bcm.edu 37 14 23597394 23597394 + Silent SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A8 23428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23608686 23608686 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC7A9 11136 broad.mit.edu 37 19 33351376 33351377 + Intron INS - A A rs5827823 unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC7A9 11136 broad.mit.edu 37 19 33359494 33359494 + Intron SNP G T T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC8A1 6546 broad.mit.edu;hgsc.bcm.edu 37 2 40342426 40342426 + Silent SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC8A1 6546 hgsc.bcm.edu 37 2 40392062 40392062 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC8A2 6543 broad.mit.edu 37 19 47975113 47975114 + 5'UTR DEL AG - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC8A2 6543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47969097 47969097 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC8A2 6543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47969450 47969450 + Silent SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC8A2 6543 hgsc.bcm.edu;ucsc.edu 37 19 47940782 47940782 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC8A3 6547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70633462 70633462 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC8A3 6547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70633975 70633975 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC8A3 6547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70634851 70634851 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A10 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 111923204 111923204 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173526501 173526501 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A11 0 hgsc.bcm.edu 37 1 173517587 173517587 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A1 6548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27440565 27440565 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A1 6548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27440753 27440753 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A2 6549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103281704 103281704 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SLC9A3 6550 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 482713 482713 + Silent SNP G G A rs150200197 unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A3 6550 broad.mit.edu;ucsc.edu 37 5 475720 475720 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC9A3 6550 hgsc.bcm.edu;ucsc.edu 37 5 485324 485324 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC9A3R1 9368 hgsc.bcm.edu;ucsc.edu 37 17 72763137 72763137 + Intron SNP C C A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A3R2 9351 hgsc.bcm.edu 37 16 2078098 2078098 + Intron SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC9A4 389015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103095413 103095413 + Silent SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A4 389015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103120167 103120167 + Splice_Site SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A4 389015 broad.mit.edu;ucsc.edu 37 2 103120043 103120043 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC9A4 389015 hgsc.bcm.edu;ucsc.edu 37 2 103148953 103148953 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC9A5 6553 broad.mit.edu;hgsc.bcm.edu 37 16 67290903 67290903 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A5 6553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67290936 67290936 + Silent SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A5 6553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67304703 67304703 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A5 6553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67304704 67304704 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A6 10479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135080323 135080323 + Silent SNP T T C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A7 84679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 46522060 46522060 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A8 23315 hgsc.bcm.edu 37 20 48429462 48429462 + Missense_Mutation SNP G G T rs76846045 bycluster;byfrequency;by1000genomes TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLC9A9 285195 broad.mit.edu 37 3 143567237 143567237 + Translation_Start_Site SNP G T T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLC9A9 285195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142987800 142987800 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A9 285195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 143297454 143297454 + Silent SNP C C A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLC9A9 285195 hgsc.bcm.edu 37 3 142985575 142985575 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLCO1A2 6579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21454187 21454187 + Silent SNP T T A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1A2 6579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21471822 21471822 + Silent SNP G G T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1A2 6579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21472329 21472329 + Intron SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1A2 6579 hgsc.bcm.edu;ucsc.edu 37 12 21487516 21487516 + Intron SNP C C T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B1 10599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21331930 21331930 + Missense_Mutation SNP G G A rs147421160 unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B1 10599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21353532 21353532 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B1 10599 hgsc.bcm.edu 37 12 21355424 21355424 + Splice_Site SNP G G T rs143895524 unknown;alternate_allele TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLCO1B1 10599 hgsc.bcm.edu 37 12 21375307 21375307 + Intron SNP A A G rs71577817 bycluster;byfrequency TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B1 10599 hgsc.bcm.edu;ucsc.edu 37 12 21319617 21319617 + Intron SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B1 10599 hgsc.bcm.edu;ucsc.edu 37 12 21370118 21370118 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLCO1B3 28234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21008017 21008017 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B3 28234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21028191 21028191 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B3 28234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21032479 21032479 + Silent SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B3 28234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21036504 21036504 + Silent SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1B3 28234 hgsc.bcm.edu;ucsc.edu 37 12 21014049 21014049 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO1C1 53919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 20893281 20893281 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO2A1 6578 broad.mit.edu 37 3 133653504 133653504 + 3'UTR SNP T G G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLCO2A1 6578 hgsc.bcm.edu 37 3 133674025 133674025 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLCO2B1 11309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74876867 74876867 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO3A1 28232 broad.mit.edu 37 15 92707545 92707545 + 3'UTR DEL A - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLCO3A1 28232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 92669422 92669422 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO4A1 28231 broad.mit.edu 37 20 61303317 61303317 + 3'UTR SNP A T T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLCO4A1 28231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61299368 61299368 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO4A1 28231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61300316 61300316 + Silent SNP G G T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO4C1 353189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 101592957 101592957 + Nonsense_Mutation SNP G G C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SLCO4C1 353189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 101597654 101597654 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SLCO4C1 353189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 101597678 101597678 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO4C1 353189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 101631681 101631681 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SLCO4C1 353189 hgsc.bcm.edu;ucsc.edu 37 5 101575087 101575087 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLCO5A1 81796 hgsc.bcm.edu 37 8 70744113 70744113 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLCO5A1 81796 hgsc.bcm.edu;ucsc.edu 37 8 70667745 70667745 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLFN11 91607 broad.mit.edu;hgsc.bcm.edu 37 17 33689790 33689790 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLFN11 91607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33679558 33679558 + Silent SNP T T C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLFN11 91607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33690266 33690266 + Silent SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLFN12L 100506736 broad.mit.edu;hgsc.bcm.edu 37 17 33802320 33802320 + Silent SNP A A G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLFN12L 100506736 broad.mit.edu;ucsc.edu 37 17 33802445 33802445 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLFN12L 100506736 hgsc.bcm.edu 37 17 33849295 33849295 + Splice_Region SNP T T G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLFN13 146857 broad.mit.edu 37 17 33767432 33767432 + 3'UTR SNP A G G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLFN13 146857 broad.mit.edu 37 17 33767432 33767432 + 3'UTR SNP A G G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLFN13 146857 hgsc.bcm.edu;ucsc.edu 37 17 33769171 33769171 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLFN14 342618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33884519 33884519 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLFN14 342618 hgsc.bcm.edu 37 17 33875669 33875669 + Silent SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLFN5 162394 broad.mit.edu;hgsc.bcm.edu 37 17 33585670 33585670 + Splice_Site SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLFN5 162394 hgsc.bcm.edu;ucsc.edu 37 17 33586478 33586478 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLIT1 6585 broad.mit.edu;hgsc.bcm.edu 37 10 98945307 98945307 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT2 9353 broad.mit.edu 37 4 20490577 20490577 + Silent SNP G A A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLIT2 9353 broad.mit.edu 37 4 20620767 20620767 + 3'UTR SNP A G G novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLIT2 9353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 20541152 20541152 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT2 9353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 20543097 20543097 + Silent SNP T T C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT2 9353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 20550708 20550708 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT2 9353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 20599967 20599967 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT2 9353 broad.mit.edu;ucsc.edu 37 4 20512749 20512749 + Silent SNP T C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLIT2 9353 hgsc.bcm.edu 37 4 20550665 20550665 + Intron SNP T T A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLIT3 6586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 168093623 168093623 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT3 6586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 168098202 168098202 + Splice_Site SNP C C G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT3 6586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 168114104 168114104 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT3 6586 hgsc.bcm.edu 37 5 168096839 168096839 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLIT3 6586 hgsc.bcm.edu 37 5 168138034 168138034 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLITRK1 114798 broad.mit.edu 37 13 84455887 84455887 + 5'UTR DEL A - - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLITRK1 114798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 84454858 84454858 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK1 114798 hgsc.bcm.edu 37 13 84454708 84454708 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLITRK1 114798 hgsc.bcm.edu;ucsc.edu 37 13 84453865 84453865 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLITRK2 84631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 144905975 144905975 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK3 22865 broad.mit.edu;hgsc.bcm.edu 37 3 164907318 164907318 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK3 22865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 164905805 164905805 + Silent SNP C C G rs145516007 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK4 139065 hgsc.bcm.edu 37 X 142717055 142717058 + Frame_Shift_Del DEL TACT TACT - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 TACT TACT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK4 139065 hgsc.bcm.edu 37 X 142718802 142718802 + Silent SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLITRK5 26050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 88329572 88329572 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK5 26050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 88329649 88329649 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK5 26050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 88329824 88329824 + Silent SNP A A G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK5 26050 broad.mit.edu;ucsc.edu 37 13 88329235 88329235 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLITRK5 26050 hgsc.bcm.edu;ucsc.edu 37 13 88329682 88329682 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLITRK6 84189 broad.mit.edu 37 13 86368002 86368002 + 3'UTR SNP G A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86368512 86368512 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86369560 86369560 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86370082 86370082 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86370298 86370298 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86370304 86370304 + Silent SNP G G A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86370342 86370342 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLITRK6 84189 broad.mit.edu;ucsc.edu 37 13 86368849 86368849 + Nonsense_Mutation SNP G A A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLITRK6 84189 hgsc.bcm.edu;ucsc.edu 37 13 86369855 86369855 + Silent SNP C C T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLITRK6 84189 hgsc.bcm.edu;ucsc.edu 37 13 86370165 86370165 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLK 9748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105750469 105750469 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLK 9748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105752775 105752775 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLMAP 7871 broad.mit.edu 37 3 57913124 57913124 + 3'UTR SNP C A A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLMAP 7871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 57913033 57913033 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLMO2 51012 broad.mit.edu 37 20 57609945 57609946 + 3'UTR INS - AA AA novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLMO2 51012 broad.mit.edu 37 20 57609945 57609946 + 3'UTR INS - A A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLMO2 51012 broad.mit.edu 37 20 57609945 57609946 + 3'UTR INS - A A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SLTM 79811 hgsc.bcm.edu;ucsc.edu 37 15 59205785 59205786 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLU7 10569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 159835383 159835383 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLU7 10569 hgsc.bcm.edu 37 5 159840612 159840612 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLU7 10569 hgsc.bcm.edu;ucsc.edu 37 5 159833540 159833540 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SLX4 84464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3639200 3639200 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLX4 84464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3640657 3640657 + Silent SNP G G T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLX4 84464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3641170 3641170 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLX4 84464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3641179 3641179 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SLX4 84464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3658538 3658538 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMAD1 4086 broad.mit.edu 37 4 146479247 146479247 + 3'UTR DEL C - - rs113928313 unknown;alternate_allele TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD2 4087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 45368211 45368211 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMAD2 4087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 45395769 45395769 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMAD3 4088 hgsc.bcm.edu;ucsc.edu 37 15 67477111 67477111 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMAD4 4089 broad.mit.edu 37 18 48605008 48605008 + 3'UTR DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD4 4089 broad.mit.edu 37 18 48609103 48609103 + 3'UTR DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD4 4089 broad.mit.edu;hgsc.bcm.edu 37 18 48581143 48581143 + Intron SNP C C T novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMAD4 4089 hgsc.bcm.edu 37 18 48604770 48604770 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMAD6 4091 broad.mit.edu 37 15 67073877 67073878 + 3'UTR INS - G G novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD7 4092 broad.mit.edu 37 18 46447624 46447624 + 3'UTR DEL A - - novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD7 4092 broad.mit.edu 37 18 46447624 46447624 + 3'UTR DEL A - - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD7 4092 broad.mit.edu 37 18 46447624 46447624 + 3'UTR DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD7 4092 broad.mit.edu 37 18 46469033 46469033 + Intron SNP A T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAD7 4092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 46474803 46474803 + Silent SNP A A G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMAD9 4093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37453538 37453538 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMAD9 4093 hgsc.bcm.edu 37 13 37422885 37422885 + Silent SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMAP1 60682 broad.mit.edu 37 6 71508370 71508370 + Frame_Shift_Del DEL A - - novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAP2 64744 broad.mit.edu 37 1 40887783 40887783 + 3'UTR SNP A C C novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMAP2 64744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40872508 40872508 + Silent SNP T T A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA2 6595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2039524 2039524 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA2 6595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2056787 2056787 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA2 6595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2116050 2116050 + Splice_Site SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA2 6595 hgsc.bcm.edu;ucsc.edu 37 9 2081838 2081838 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCA4 6597 broad.mit.edu 37 19 11132522 11132522 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11098575 11098575 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11113809 11113809 + Silent SNP G G T rs187681043 by1000genomes;alternate_allele TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11129632 11129632 + Splice_Site SNP G G A rs113895708 unknown;alternate_allele TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11143976 11143976 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11144110 11144110 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11144146 11144146 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMARCA4 6597 hgsc.bcm.edu 37 19 11106894 11106894 + Missense_Mutation SNP A A C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA4 6597 hgsc.bcm.edu 37 19 11144113 11144113 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCA4 6597 hgsc.bcm.edu 37 19 11145750 11145750 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCA4 6597 hgsc.bcm.edu 37 19 11145751 11145751 + Silent SNP C C A rs143621108 unknown;alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCA4 6597 hgsc.bcm.edu;ucsc.edu 37 19 11100029 11100030 + In_Frame_Ins INS - - GAA novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCA4 6597 hgsc.bcm.edu;ucsc.edu 37 19 11114089 11114089 + Intron SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCA4 6597 hgsc.bcm.edu;ucsc.edu 37 19 11136957 11136957 + Intron SNP C C A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCA5 8467 broad.mit.edu 37 4 144474413 144474413 + 3'UTR SNP A G G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMARCA5 8467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 144465930 144465930 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCAD1 56916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 95199614 95199614 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCAL1 50485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217280065 217280065 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCAL1 50485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217285020 217285020 + Splice_Site SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCAL1 50485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217342998 217342998 + Silent SNP A A G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCB1 6598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24143192 24143192 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCB1 6598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24175874 24175874 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMARCB1 6598 hgsc.bcm.edu 37 22 24159114 24159114 + Silent SNP C C A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCB1 6598 hgsc.bcm.edu 37 22 24176329 24176329 + Silent SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCC1 6599 hgsc.bcm.edu;ucsc.edu 37 3 47712153 47712153 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCC2 6601 broad.mit.edu 37 12 56558430 56558430 + Silent SNP A C C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMARCC2 6601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56567525 56567525 + Silent SNP A A G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCD1 6602 broad.mit.edu 37 12 50482450 50482450 + Intron SNP T C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMARCD1 6602 broad.mit.edu 37 12 50482953 50482954 + Intron INS - G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMARCD1 6602 hgsc.bcm.edu;ucsc.edu 37 12 50481179 50481179 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCD3 6604 broad.mit.edu 37 7 150938474 150938474 + Intron SNP C T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMARCD3 6604 broad.mit.edu;hgsc.bcm.edu 37 7 150945693 150945693 + 5'UTR SNP C C A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCD3 6604 hgsc.bcm.edu;ucsc.edu 37 7 150938597 150938597 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMARCE1 6605 broad.mit.edu;hgsc.bcm.edu 37 17 38798730 38798730 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMARCE1 6605 hgsc.bcm.edu;ucsc.edu 37 17 38793756 38793758 + In_Frame_Del DEL CCT CCT - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 CCT CCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC1A 8243 broad.mit.edu 37 X 53402443 53402443 + 3'UTR DEL A - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMC1A 8243 hgsc.bcm.edu 37 X 53430709 53430709 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC1A 8243 hgsc.bcm.edu;ucsc.edu 37 X 53430820 53430820 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC1A 8243 hgsc.bcm.edu;ucsc.edu 37 X 53436014 53436014 + Silent SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMC1B 27127 broad.mit.edu 37 22 45740382 45740382 + 3'UTR SNP G C C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMC1B 27127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45745648 45745648 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC1B 27127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45779436 45779436 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC2 10592 broad.mit.edu;hgsc.bcm.edu 37 9 106877025 106877025 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMC2 10592 broad.mit.edu;ucsc.edu 37 9 106864804 106864804 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112335137 112335137 + Silent SNP A A G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112340772 112340772 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112341762 112341762 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112356197 112356197 + Missense_Mutation SNP T T G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112360237 112360237 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC3 9126 broad.mit.edu;ucsc.edu 37 10 112360239 112360239 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMC3 9126 hgsc.bcm.edu;ucsc.edu 37 10 112328742 112328742 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMC4 10051 hgsc.bcm.edu 37 3 160131258 160131258 + Intron SNP T T C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC5 23137 broad.mit.edu;hgsc.bcm.edu 37 9 72933592 72933592 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC5 23137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 72892386 72892386 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC5 23137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 72897437 72897437 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMC6 79677 hgsc.bcm.edu 37 2 17922877 17922877 + Splice_Site SNP A A G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID SMC6 79677 hgsc.bcm.edu;ucsc.edu 37 2 17877627 17877627 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID SMCHD1 23347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2722637 2722637 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMCHD1 23347 hgsc.bcm.edu;ucsc.edu 37 18 2796405 2796405 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMCR7 125170 hgsc.bcm.edu 37 17 18166397 18166397 + Intron SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMCR7L 54471 broad.mit.edu 37 22 39910639 39910639 + 3'UTR DEL C - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMCR7L 54471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39908345 39908345 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMCR8 140775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18219207 18219207 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMCR8 140775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18219366 18219366 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMCR8 140775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18220787 18220787 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMCR8 140775 broad.mit.edu;ucsc.edu 37 17 18219186 18219186 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMEK1 55671 broad.mit.edu 37 14 91924967 91924967 + 3'UTR SNP C A A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMEK1 55671 broad.mit.edu 37 14 91941910 91941914 + Intron DEL AAAAC - - rs138474613 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AAAAC AAAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMEK1 55671 broad.mit.edu 37 14 91942053 91942053 + Intron SNP C A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMEK1 55671 broad.mit.edu 37 14 91942053 91942053 + Intron SNP C A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMEK1 55671 broad.mit.edu 37 14 91942100 91942100 + Intron SNP A G G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMEK1 55671 broad.mit.edu;hgsc.bcm.edu 37 14 91925215 91925215 + Splice_Site SNP T T A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMEK1 55671 broad.mit.edu;hgsc.bcm.edu 37 14 91975891 91975891 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMEK1 55671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 91942217 91942217 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMEK1 55671 hgsc.bcm.edu;ucsc.edu 37 14 91937228 91937228 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMEK2 57223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 55813757 55813757 + Silent SNP T T A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMEK2 57223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 55825590 55825590 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMEK2 57223 hgsc.bcm.edu 37 2 55804449 55804449 + Splice_Site SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMEK2 57223 hgsc.bcm.edu 37 2 55804449 55804449 + Splice_Site SNP A A T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMEK2 57223 hgsc.bcm.edu;ucsc.edu 37 2 55813839 55813840 + Frame_Shift_Ins INS - - A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMG1 23049 hgsc.bcm.edu;ucsc.edu 37 16 18844384 18844384 + Silent SNP A A T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID SMG5 23381 broad.mit.edu;hgsc.bcm.edu 37 1 156243168 156243168 + Silent SNP T T A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMG5 23381 hgsc.bcm.edu 37 1 156252471 156252473 + Frame_Shift_Del DEL TGG TGG - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 TGG TGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMG6 23293 broad.mit.edu 37 17 1964631 1964631 + 3'UTR DEL C - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMG6 23293 broad.mit.edu;hgsc.bcm.edu 37 17 1964808 1964808 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMG6 23293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2076117 2076117 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMG6 23293 hgsc.bcm.edu 37 17 2203200 2203200 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMG6 23293 hgsc.bcm.edu 37 17 2203323 2203323 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMG6 23293 hgsc.bcm.edu;ucsc.edu 37 17 2195864 2195864 + Silent SNP A A T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMG7 9887 broad.mit.edu;ucsc.edu 37 1 183515189 183515189 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMG7 9887 hgsc.bcm.edu;ucsc.edu 37 1 183506271 183506271 + Intron SNP A A T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMN1 6606 hgsc.bcm.edu 37 5 69372340 69372340 + Intron SNP C C G novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMO 6608 broad.mit.edu 37 7 128852025 128852025 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx SMO 6608 broad.mit.edu;hgsc.bcm.edu 37 7 128845209 128845209 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SMO 6608 hgsc.bcm.edu 37 7 128848598 128848598 + Splice_Site SNP A A T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMO 6608 hgsc.bcm.edu 37 7 128849218 128849218 + Silent SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMOC1 64093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70459140 70459140 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMOC1 64093 hgsc.bcm.edu;ucsc.edu 37 14 70480128 70480128 + Silent SNP G G A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMOX 54498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4164251 4164251 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMOX 54498 hgsc.bcm.edu 37 20 4158152 4158152 + Silent SNP C C G rs6107418 bycluster;byfrequency;by1000genomes TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMPD1 6609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6415569 6415569 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMPD2 6610 hgsc.bcm.edu 37 6 109762784 109762784 + Silent SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMPD2 6610 hgsc.bcm.edu 37 6 109764751 109764751 + Silent SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMPD2 6610 hgsc.bcm.edu;ucsc.edu 37 6 109763200 109763200 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMPD2 6610 hgsc.bcm.edu;ucsc.edu 37 6 109763241 109763241 + Missense_Mutation SNP A A G novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMR3A 26952 broad.mit.edu;hgsc.bcm.edu 37 4 71232724 71232724 + 3'UTR SNP G G T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMS 6611 broad.mit.edu 37 X 22012650 22012650 + 3'UTR DEL T - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMS 6611 broad.mit.edu 37 X 22012650 22012650 + 3'UTR DEL T - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMS 6611 broad.mit.edu;hgsc.bcm.edu 37 X 22002497 22002497 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMS 6611 broad.mit.edu;hgsc.bcm.edu 37 X 22010764 22010764 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMTN 6525 hgsc.bcm.edu 37 22 31496960 31496960 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMTN 6525 hgsc.bcm.edu;ucsc.edu 37 22 31493329 31493329 + Intron SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMTNL1 219537 broad.mit.edu 37 11 57317779 57317779 + 3'UTR DEL C - - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMTNL2 342527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4500589 4500589 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMU1 55234 hgsc.bcm.edu 37 9 33073680 33073680 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMUG1 23583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54577492 54577492 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMURF1 57154 broad.mit.edu 37 7 98625240 98625240 + 3'UTR DEL A - - novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMURF1 57154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98639741 98639741 + Silent SNP G G C rs138664041 unknown;alternate_allele TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMURF2 64750 broad.mit.edu 37 17 62541851 62541851 + 3'UTR SNP A G G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMURF2 64750 broad.mit.edu 37 17 62541851 62541851 + 3'UTR SNP A G G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMURF2 64750 broad.mit.edu 37 17 62541851 62541851 + 3'UTR SNP A G G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMURF2 64750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62576936 62576936 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMURF2 64750 hgsc.bcm.edu 37 17 62551963 62551963 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMURF2 64750 hgsc.bcm.edu 37 17 62602704 62602704 + Intron SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMURF2 64750 hgsc.bcm.edu;ucsc.edu 37 17 62542419 62542419 + Silent SNP A A T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMURF2 64750 hgsc.bcm.edu;ucsc.edu 37 17 62574659 62574659 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMYD2 56950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214510074 214510074 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SMYD2 56950 hgsc.bcm.edu;ucsc.edu 37 1 214488133 214488133 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SMYD3 64754 broad.mit.edu 37 1 246093466 246093466 + Intron DEL A - - rs11295264 bycluster TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SMYD4 114826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1703754 1703754 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNAI1 6615 broad.mit.edu 37 20 48600840 48600840 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNAI2 6591 broad.mit.edu 37 8 49831218 49831219 + 3'UTR DEL GT - - rs147930178 bycluster;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNAI2 6591 broad.mit.edu 37 8 49833919 49833919 + 5'UTR SNP A T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNAI2 6591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 49832751 49832751 + Missense_Mutation SNP T T A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNAI2 6591 hgsc.bcm.edu;ucsc.edu 37 8 49833764 49833764 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAI3 333929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88744902 88744902 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNAP23 8773 hgsc.bcm.edu;ucsc.edu 37 15 42822003 42822003 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAP91 9892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 84302945 84302945 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNAP91 9892 broad.mit.edu;ucsc.edu 37 6 84292066 84292066 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNAP91 9892 hgsc.bcm.edu 37 6 84320353 84320353 + Intron SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAP91 9892 hgsc.bcm.edu 37 6 84320353 84320353 + Intron SNP A A C novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAPC1 6617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 62261727 62261727 + 3'UTR SNP T T G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNAPC1 6617 hgsc.bcm.edu;ucsc.edu 37 14 62234060 62234060 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAPC1 6617 hgsc.bcm.edu;ucsc.edu 37 14 62249031 62249031 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAPC3 6619 hgsc.bcm.edu;ucsc.edu 37 9 15453105 15453105 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNAPC4 6621 broad.mit.edu 37 9 139277995 139277997 + In_Frame_Del DEL GCT - - rs147271628 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 GCT GCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNCA 6622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 90743427 90743427 + Silent SNP A A G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNCAIP 9627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 121759046 121759046 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNCAIP 9627 hgsc.bcm.edu 37 5 121758633 121758633 + Silent SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SND1 27044 broad.mit.edu 37 7 127700754 127700755 + Intron INS - GG GG novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SND1 27044 broad.mit.edu 37 7 127732380 127732381 + 3'UTR DEL TA - - rs76223436 unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SND1 27044 broad.mit.edu 37 7 127732381 127732381 + 3'UTR DEL A - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SND1 27044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127341301 127341301 + Silent SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SND1 27044 hgsc.bcm.edu 37 7 127731869 127731869 + Intron SNP T T C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SND1 27044 hgsc.bcm.edu;ucsc.edu 37 7 127343341 127343341 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNED1 25992 broad.mit.edu 37 2 241976725 241976725 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNED1 25992 broad.mit.edu 37 2 241991198 241991199 + Frame_Shift_Ins INS - G G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNED1 25992 broad.mit.edu;hgsc.bcm.edu 37 2 241974046 241974046 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNED1 25992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241989270 241989270 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNED1 25992 hgsc.bcm.edu 37 2 241991875 241991875 + Silent SNP G G A rs57214830 bycluster;by1000genomes TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNHG1 23642 broad.mit.edu 37 11 62620742 62620742 + Intron SNP T G G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNHG1 23642 broad.mit.edu;hgsc.bcm.edu 37 11 62621378 62621378 + RNA SNP T T G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNHG5 387066 broad.mit.edu;hgsc.bcm.edu 37 6 86387116 86387116 + RNA SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNIP1 79753 hgsc.bcm.edu;ucsc.edu 37 1 38006224 38006225 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNORA1 677792 broad.mit.edu;hgsc.bcm.edu 37 11 93465666 93465666 + upstream;downstream SNP A A C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORA47 677828 broad.mit.edu;hgsc.bcm.edu 37 5 76376388 76376388 + RNA SNP A A G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD10 652966 broad.mit.edu;hgsc.bcm.edu 37 17 7480257 7480257 + RNA SNP T T A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD115-20 100033460 broad.mit.edu 37 15 25463960 25463960 + Intron SNP C G G rs140817292 by1000genomes;alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNORD116-17 100033429 broad.mit.edu;hgsc.bcm.edu 37 15 25331751 25331751 + RNA SNP G G T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD116-4 100033416 broad.mit.edu 37 15 25333795 25333795 + Intron SNP C A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNORD116-5 100033417 broad.mit.edu;hgsc.bcm.edu 37 15 25313022 25313022 + RNA SNP T T C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD32B 692092 broad.mit.edu;hgsc.bcm.edu 37 6 29550080 29550080 + RNA SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD45C 692085 broad.mit.edu;hgsc.bcm.edu 37 1 76252797 76252797 + RNA SNP A A C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD45C 692085 broad.mit.edu;hgsc.bcm.edu 37 1 76252833 76252833 + RNA SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD52 26797 broad.mit.edu;hgsc.bcm.edu 37 6 31804867 31804867 + RNA SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD73A 8944 broad.mit.edu;hgsc.bcm.edu 37 4 152025029 152025029 + RNA SNP C C T rs191265801 by1000genomes TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNORD89 692205 broad.mit.edu;hgsc.bcm.edu 37 2 101889409 101889409 + RNA SNP A A G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNPH 9751 broad.mit.edu 37 20 1286882 1286882 + 3'UTR DEL G - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRK 54861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 43389698 43389698 + Silent SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRNP200 23020 broad.mit.edu 37 2 96940604 96940604 + 3'UTR SNP A G G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRNP200 23020 broad.mit.edu 37 2 96950487 96950488 + Intron INS - T T rs113944205 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRNP200 23020 broad.mit.edu 37 2 96950487 96950488 + Intron INS - T T rs113944205 unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRNP200 23020 broad.mit.edu 37 2 96950488 96950488 + Intron DEL T - - rs113944205 unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRNP200 23020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96962717 96962717 + Missense_Mutation SNP C C T rs144219123 unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRNP200 23020 hgsc.bcm.edu;ucsc.edu 37 2 96945256 96945256 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRNP200 23020 hgsc.bcm.edu;ucsc.edu 37 2 96959208 96959208 + Silent SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNRNP25 79622 broad.mit.edu 37 16 107571 107571 + 3'UTR DEL A - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRNP27 11017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70122252 70122252 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRNP27 11017 hgsc.bcm.edu;ucsc.edu 37 2 70124540 70124540 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNRNP40 9410 hgsc.bcm.edu;ucsc.edu 37 1 31766074 31766074 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRNP48 154007 broad.mit.edu 37 6 7611128 7611128 + 3'UTR DEL C - - rs10717454 bycluster TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRNP48 154007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7594021 7594021 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRNP48 154007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7605680 7605680 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRPA 6626 broad.mit.edu 37 19 41257287 41257287 + 5'UTR SNP T A A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNRPB 6628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2442418 2442418 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRPB 6628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2448399 2448399 + Silent SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRPN 6638 broad.mit.edu;hgsc.bcm.edu 37 15 25222145 25222145 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNRPN 6638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 25220568 25220568 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNTB1 6641 broad.mit.edu;hgsc.bcm.edu 37 8 121823811 121823811 + Silent SNP G G C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNTG1 54212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 51415372 51415372 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNTG1 54212 hgsc.bcm.edu;ucsc.edu 37 8 51705388 51705388 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNTG2 54221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1094047 1094047 + Silent SNP T T G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNTG2 54221 hgsc.bcm.edu;ucsc.edu 37 2 1204903 1204903 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNW1 22938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78184796 78184796 + Silent SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNW1 22938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78217740 78217740 + Silent SNP A A G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNW1 22938 hgsc.bcm.edu;ucsc.edu 37 14 78184785 78184797 + Frame_Shift_Del DEL CTCTGGGCCATAT CTCTGGGCCATAT - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 CTCTGGGCCATAT CTCTGGGCCATAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX10 29887 broad.mit.edu 37 7 26404071 26404071 + Intron SNP G A A rs2253569 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX10 29887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 26411530 26411530 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX11 29916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46198653 46198653 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX11 29916 hgsc.bcm.edu 37 17 46190702 46190702 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX13 23161 broad.mit.edu 37 7 17907964 17907964 + Intron SNP C T T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX13 23161 broad.mit.edu;hgsc.bcm.edu 37 7 17836399 17836399 + Intron SNP C C G novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX13 23161 broad.mit.edu;ucsc.edu 37 7 17833769 17833769 + 3'UTR SNP A G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX13 23161 hgsc.bcm.edu;ucsc.edu 37 7 17841262 17841262 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX13 23161 hgsc.bcm.edu;ucsc.edu 37 7 17915357 17915357 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX14 57231 broad.mit.edu 37 6 86215537 86215537 + 3'UTR SNP G A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX14 57231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 86256928 86256928 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX14 57231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 86258029 86258029 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX14 57231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 86258079 86258079 + Silent SNP A A T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX14 57231 hgsc.bcm.edu 37 6 86303401 86303401 + Silent SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX15 29907 hgsc.bcm.edu 37 11 64799918 64799918 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX15 29907 hgsc.bcm.edu 37 11 64799919 64799919 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX16 64089 hgsc.bcm.edu;ucsc.edu 37 8 82751992 82751992 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX17 9784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27598749 27598749 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX17 9784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27598997 27598997 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX18 112574 broad.mit.edu;hgsc.bcm.edu 37 5 53839239 53839239 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX18 112574 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 53814577 53814577 + Nonsense_Mutation SNP T T A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX18 112574 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 53815390 53815390 + Silent SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX18 112574 hgsc.bcm.edu;ucsc.edu 37 5 53839014 53839014 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX19 399979 broad.mit.edu 37 11 130747921 130747922 + 3'UTR DEL CC - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX20 124460 broad.mit.edu 37 16 50709790 50709790 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX20 124460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50701972 50701972 + 3'UTR SNP A A G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX21 90203 broad.mit.edu 37 20 44463023 44463037 + In_Frame_Del DEL GACGAGGACGACGAG - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 GACGAGGACGACGAG GACGAGGACGACGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX21 90203 broad.mit.edu 37 20 44469233 44469233 + Intron SNP C A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX22 79856 broad.mit.edu 37 15 64446114 64446114 + Intron SNP A C C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX22 79856 broad.mit.edu 37 15 64448384 64448384 + 3'UTR SNP A G G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX24 28966 hgsc.bcm.edu;ucsc.edu 37 5 122335673 122335673 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX25 83891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186188308 186188308 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX25 83891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186244946 186244946 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX25 83891 broad.mit.edu;ucsc.edu 37 4 186283245 186283245 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX27 81609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151611585 151611585 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX27 81609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151665946 151665946 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX29 92017 broad.mit.edu 37 16 12664640 12664641 + 3'UTR INS - AG AG rs3842349 bycluster TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX29 92017 hgsc.bcm.edu;ucsc.edu 37 16 12155455 12155455 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX30 401548 broad.mit.edu 37 9 115631329 115631330 + 3'UTR DEL TC - - rs35971152 bycluster;by1000genomes TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX30 401548 broad.mit.edu 37 9 115632451 115632451 + 3'UTR DEL T - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX30 401548 broad.mit.edu 37 9 115632553 115632553 + 3'UTR DEL T - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX31 169166 broad.mit.edu 37 8 101585896 101585896 + 3'UTR DEL T - - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX32 254122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65617711 65617711 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX33 257364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75942230 75942230 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX33 257364 broad.mit.edu;ucsc.edu 37 15 75942381 75942381 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX3 8724 hgsc.bcm.edu 37 6 108533446 108533446 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX5 27131 broad.mit.edu;ucsc.edu 37 20 17930825 17930825 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX7 51375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 99156689 99156689 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SNX8 29886 broad.mit.edu;ucsc.edu 37 7 2314823 2314823 + Silent SNP C T T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SNX8 29886 hgsc.bcm.edu 37 7 2297455 2297455 + Intron SNP A A T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SNX9 51429 hgsc.bcm.edu;ucsc.edu 37 6 158330994 158330994 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOAT2 8435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53512684 53512684 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOAT2 8435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53512685 53512685 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOAT2 8435 hgsc.bcm.edu;ucsc.edu 37 12 53516966 53516966 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOBP 55084 broad.mit.edu;hgsc.bcm.edu 37 6 107955403 107955403 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOBP 55084 broad.mit.edu;ucsc.edu 37 6 107811866 107811866 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOCS2 8835 broad.mit.edu 37 12 93968379 93968379 + Intron DEL T - - rs35259505 unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOCS2 8835 broad.mit.edu 37 12 93968379 93968379 + Intron DEL T - - rs35259505 unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOCS2 8835 broad.mit.edu 37 12 93968379 93968379 + Intron DEL T - - rs35259505 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOCS3 9021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76354730 76354730 + Silent SNP C C T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOCS4 122809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55510990 55510991 + Frame_Shift_Ins INS - - T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOCS5 9655 broad.mit.edu 37 2 46987767 46987767 + 3'UTR DEL A - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOCS6 9306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 67992983 67992983 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOCS7 30837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36523827 36523827 + Silent SNP A A G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOCS7 30837 hgsc.bcm.edu 37 17 36523866 36523866 + Silent SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOD1 6647 broad.mit.edu 37 21 33032038 33032038 + 5'UTR SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOD2 6648 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160113748 160113748 + Silent SNP G G T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOHLH1 402381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138586216 138586216 + Silent SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOHLH1 402381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138586217 138586217 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOHLH2 54937 hgsc.bcm.edu 37 13 36767945 36767945 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOHLH2 54937 hgsc.bcm.edu;ucsc.edu 37 13 36748941 36748941 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOLH 6650 broad.mit.edu 37 16 588295 588295 + Intron DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOLH 6650 broad.mit.edu 37 16 603028 603063 + Splice_Site DEL CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOLH 6650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 596909 596909 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOLH 6650 hgsc.bcm.edu 37 16 601338 601338 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34922737 34922737 + Silent SNP T T A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34924766 34924766 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34925507 34925507 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 hgsc.bcm.edu 37 21 34925612 34925635 + In_Frame_Del DEL GTCCTGGAGTCTTCGGCTGTGACC GTCCTGGAGTCTTCGGCTGTGACC - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 GTCCTGGAGTCTTCGGCTGTGACC GTCCTGGAGTCTTCGGCTGTGACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 hgsc.bcm.edu 37 21 34925612 34925635 + In_Frame_Del DEL GTCCTGGAGTCTTCGGCTGTGACC GTCCTGGAGTCTTCGGCTGTGACC - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 GTCCTGGAGTCTTCGGCTGTGACC GTCCTGGAGTCTTCGGCTGTGACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 hgsc.bcm.edu 37 21 34926967 34926967 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SON 6651 hgsc.bcm.edu 37 21 34948697 34948697 + Frame_Shift_Del DEL A A - rs34373121 bycluster TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 hgsc.bcm.edu 37 21 34948697 34948697 + Frame_Shift_Del DEL A A - rs34373121 bycluster TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 hgsc.bcm.edu 37 21 34948742 34948742 + 3'UTR SNP G G C rs76429599 bycluster;byfrequency TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SON 6651 hgsc.bcm.edu;ucsc.edu 37 21 34922635 34922635 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SON 6651 hgsc.bcm.edu;ucsc.edu 37 21 34929511 34929511 + Silent SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORBS1 10580 broad.mit.edu 37 10 97074670 97074670 + 3'UTR SNP T G G novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORBS1 10580 broad.mit.edu;hgsc.bcm.edu 37 10 97174217 97174217 + Intron SNP A A C novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS1 10580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97135759 97135759 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS1 10580 hgsc.bcm.edu;ucsc.edu 37 10 97144051 97144051 + Splice_Region SNP C C G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORBS2 8470 broad.mit.edu 37 4 186577860 186577860 + Intron SNP G T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORBS2 8470 broad.mit.edu;hgsc.bcm.edu 37 4 186508841 186508841 + Silent SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS2 8470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186548090 186548090 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS2 8470 broad.mit.edu;ucsc.edu 37 4 186545257 186545257 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORBS2 8470 broad.mit.edu;ucsc.edu 37 4 186599615 186599615 + 5'UTR SNP C T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORBS2 8470 hgsc.bcm.edu 37 4 186539710 186539710 + Intron SNP A A T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS2 8470 hgsc.bcm.edu 37 4 186599992 186599992 + Intron SNP A A T rs67212481 bycluster;byfrequency;by1000genomes TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORBS2 8470 hgsc.bcm.edu 37 4 186599992 186599992 + Intron SNP A A T rs67212481 bycluster;byfrequency;by1000genomes TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORBS2 8470 hgsc.bcm.edu;ucsc.edu 37 4 186545056 186545067 + In_Frame_Del DEL CATGTCCCGGGG CATGTCCCGGGG - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 CATGTCCCGGGG CATGTCCCGGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS2 8470 hgsc.bcm.edu;ucsc.edu 37 4 186599995 186599995 + Intron SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS3 10174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22414254 22414254 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS3 10174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22423910 22423910 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORBS3 10174 hgsc.bcm.edu;ucsc.edu 37 8 22424232 22424232 + Intron SNP G G C novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORCS1 114815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 108366996 108366996 + Silent SNP A A G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORCS1 114815 hgsc.bcm.edu;ucsc.edu 37 10 108447986 108447986 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORCS2 57537 broad.mit.edu 37 4 7533342 7533342 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORCS2 57537 broad.mit.edu;hgsc.bcm.edu 37 4 7533341 7533341 + Silent SNP G G T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORCS2 57537 hgsc.bcm.edu 37 4 7677815 7677815 + Silent SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORCS3 22986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 107015522 107015522 + Silent SNP G G T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORCS3 22986 broad.mit.edu;ucsc.edu 37 10 107016626 107016626 + Missense_Mutation SNP G A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORD 6652 broad.mit.edu 37 15 45353179 45353179 + Intron SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORD 6652 broad.mit.edu 37 15 45365869 45365869 + 3'UTR SNP A C C rs2070224 bycluster;byfrequency TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORD 6652 hgsc.bcm.edu 37 15 45361216 45361216 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORD 6652 hgsc.bcm.edu 37 15 45364534 45364534 + Missense_Mutation SNP A A C rs930337 bycluster;bysubmitter TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SORL1 6653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 121437700 121437700 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SORL1 6653 hgsc.bcm.edu 37 11 121416109 121416109 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SORL1 6653 hgsc.bcm.edu 37 11 121483478 121483478 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID SORL1 6653 hgsc.bcm.edu;ucsc.edu 37 11 121498365 121498365 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID SORT1 6272 broad.mit.edu 37 1 109935815 109935815 + Intron DEL C - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SORT1 6272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109884661 109884661 + Silent SNP T T C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SORT1 6272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109888450 109888450 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS1 6654 broad.mit.edu;hgsc.bcm.edu 37 2 39222302 39222302 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS1 6654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39250004 39250004 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS1 6654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39250293 39250293 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS1 6654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39281850 39281850 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS1 6654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39285889 39285889 + Silent SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS1 6654 hgsc.bcm.edu 37 2 39214679 39214679 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOS1 6654 hgsc.bcm.edu 37 2 39285899 39285899 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOS2 6655 broad.mit.edu 37 14 50623682 50623683 + Intron DEL TA - - novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOS2 6655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50597307 50597307 + Silent SNP T T A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOS2 6655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50626575 50626575 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOST 50964 broad.mit.edu 37 17 41831362 41831362 + 3'UTR DEL T - - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOST 50964 broad.mit.edu 37 17 41831443 41831444 + 3'UTR INS - C C rs17881550 bycluster;by1000genomes TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOST 50964 broad.mit.edu 37 17 41831675 41831675 + 3'UTR DEL T - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX11 6664 broad.mit.edu 37 2 5835565 5835565 + 3'UTR DEL A - - rs113402297 unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX13 9580 hgsc.bcm.edu 37 1 204092030 204092030 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX14 8403 hgsc.bcm.edu 37 3 137483860 137483860 + Silent SNP A A T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX14 8403 hgsc.bcm.edu;ucsc.edu 37 3 137483822 137483822 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX15 6665 broad.mit.edu;hgsc.bcm.edu 37 17 7491645 7491645 + 3'UTR SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX2 6657 broad.mit.edu 37 3 181431227 181431227 + 3'UTR DEL A - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX30 11063 broad.mit.edu;hgsc.bcm.edu 37 5 157078237 157078237 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX4 6659 broad.mit.edu 37 6 21596216 21596217 + 3'UTR INS - G G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX4 6659 broad.mit.edu;hgsc.bcm.edu 37 6 21595027 21595027 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX4 6659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 21594792 21594792 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX5 6660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 23818384 23818384 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX5 6660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 23998950 23998950 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX5 6660 broad.mit.edu;ucsc.edu 37 12 23818447 23818447 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX6 55553 broad.mit.edu 37 11 15994037 15994037 + 3'UTR DEL A - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX6 55553 broad.mit.edu 37 11 16337654 16337655 + Intron INS - T T rs112157070 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SOX6 55553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 16133398 16133398 + Silent SNP A A G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX6 55553 hgsc.bcm.edu 37 11 16010638 16010639 + Frame_Shift_Del DEL GG GG - novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX6 55553 hgsc.bcm.edu 37 11 16010674 16010674 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX6 55553 hgsc.bcm.edu 37 11 16010675 16010675 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX6 55553 hgsc.bcm.edu 37 11 16077420 16077420 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX7 83595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10583337 10583337 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX7 83595 hgsc.bcm.edu 37 8 10583337 10583337 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SOX8 30812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1034895 1034895 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX9 6662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 70119701 70119701 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX9 6662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 70120330 70120330 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SOX9 6662 broad.mit.edu;ucsc.edu 37 17 70119068 70119068 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SP100 6672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 231407658 231407658 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP110 3431 hgsc.bcm.edu;ucsc.edu 37 2 231033926 231033926 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SP140 11262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 231090582 231090582 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP140 11262 hgsc.bcm.edu;ucsc.edu 37 2 231102997 231102997 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SP140L 93349 broad.mit.edu;hgsc.bcm.edu 37 2 231254640 231254640 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP140L 93349 broad.mit.edu;hgsc.bcm.edu 37 2 231254641 231254641 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP1 6667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53776832 53776832 + Silent SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP2 6668 hgsc.bcm.edu;ucsc.edu 37 17 45993786 45993786 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SP3 6670 hgsc.bcm.edu 37 2 174819867 174819867 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SP4 6671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21469100 21469100 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP4 6671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21469813 21469813 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SP7 121340 broad.mit.edu 37 12 53721906 53721906 + 3'UTR DEL G - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SP8 221833 broad.mit.edu 37 7 20824858 20824858 + Frame_Shift_Del DEL A - - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SP8 221833 broad.mit.edu 37 7 20824941 20824943 + In_Frame_Del DEL GCC - - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SP8 221833 broad.mit.edu 37 7 20824941 20824943 + In_Frame_Del DEL GCC - - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 GCC GCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPA17 53340 hgsc.bcm.edu;ucsc.edu 37 11 124564181 124564203 + Frame_Shift_Del DEL TTTCTCCTTTCGATGAAGGACTC TTTCTCCTTTCGATGAAGGACTC - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 TTTCTCCTTTCGATGAAGGACTC TTTCTCCTTTCGATGAAGGACTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPACA3 124912 hgsc.bcm.edu 37 17 31323913 31323913 + Nonsense_Mutation SNP C C A rs146926616 unknown;alternate_allele TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG11A 653423 broad.mit.edu 37 8 7721244 7721244 + 3'UTR SNP C T T rs77003603 bycluster;byfrequency;by1000genomes TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPAG11A 653423 hgsc.bcm.edu 37 8 7706329 7706329 + Missense_Mutation SNP C C T rs78995392 byfrequency TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG11B 10407 hgsc.bcm.edu 37 8 7305599 7305599 + Intron SNP A A G rs2698916 bycluster;by2hit2allele TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG1 6674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101252794 101252795 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG1 6674 hgsc.bcm.edu 37 8 101196265 101196265 + Silent SNP A A G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG1 6674 hgsc.bcm.edu 37 8 101206459 101206460 + In_Frame_Ins INS - - GAC rs56246127 unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG1 6674 hgsc.bcm.edu 37 8 101206459 101206460 + In_Frame_Ins INS - - GAC rs56246127 unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG1 6674 hgsc.bcm.edu;ucsc.edu 37 8 101237526 101237526 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG16 79582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 214239769 214239769 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG17 200162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118581935 118581935 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG17 200162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118584465 118584465 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG17 200162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118598450 118598450 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG17 200162 hgsc.bcm.edu;ucsc.edu 37 1 118558649 118558649 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG17 200162 hgsc.bcm.edu;ucsc.edu 37 1 118658052 118658052 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG4 6676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34207221 34207221 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG4 6676 hgsc.bcm.edu 37 20 34208697 34208697 + Splice_Site SNP T T G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG4 6676 hgsc.bcm.edu;ucsc.edu 37 20 34206020 34206020 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG5 10615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26905536 26905536 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG5 10615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26920003 26920003 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG5 10615 hgsc.bcm.edu;ucsc.edu 37 17 26911463 26911463 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAG5 10615 hgsc.bcm.edu;ucsc.edu 37 17 26919284 26919284 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG7 9552 broad.mit.edu 37 17 4862631 4862632 + 3'UTR DEL CA - - novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPAG7 9552 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4863167 4863167 + Silent SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG8 26206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35810979 35810979 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG8 26206 hgsc.bcm.edu 37 9 35811508 35811508 + Missense_Mutation SNP A A G rs28409023 unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG8 26206 hgsc.bcm.edu 37 9 35811509 35811509 + Silent SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG9 9043 broad.mit.edu 37 17 49108860 49108860 + Intron SNP G T T novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPAG9 9043 broad.mit.edu 37 17 49197990 49197990 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPAG9 9043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 49057150 49057150 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAG9 9043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 49098649 49098649 + Silent SNP T T C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAM1 6677 broad.mit.edu 37 7 123611066 123611067 + 3'UTR INS - A A rs112450480 bycluster;by1000genomes TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPAM1 6677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123593857 123593857 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAM1 6677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123594289 123594289 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAM1 6677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123595133 123595133 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAM1 6677 hgsc.bcm.edu 37 7 123594531 123594531 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPAM1 6677 hgsc.bcm.edu;ucsc.edu 37 7 123594563 123594563 + Silent SNP G G A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPANXD 64648 hgsc.bcm.edu 37 X 140785696 140785696 + Missense_Mutation SNP T T C rs2983592 unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPANXN1 494118 broad.mit.edu 37 X 144337657 144337657 + 3'UTR SNP G A A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPANXN5 494197 broad.mit.edu 37 X 52825196 52825196 + 3'UTR SNP A G G rs144412302 by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPARC 6678 hgsc.bcm.edu;ucsc.edu 37 5 151049279 151049279 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPARCL1 8404 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88394938 88394938 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAST 6683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32323916 32323916 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPAST 6683 hgsc.bcm.edu;ucsc.edu 37 2 32362024 32362025 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA13 221178 hgsc.bcm.edu 37 13 24860482 24860482 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA16 83893 broad.mit.edu 37 3 172607188 172607188 + 3'UTR SNP G T T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPATA16 83893 broad.mit.edu 37 3 172607298 172607298 + 3'UTR SNP G A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPATA17 128153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 217947704 217947704 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPATA17 128153 hgsc.bcm.edu;ucsc.edu 37 1 217955528 217955528 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA17 128153 hgsc.bcm.edu;ucsc.edu 37 1 218036142 218036142 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPATA20 64847 broad.mit.edu;hgsc.bcm.edu 37 17 48629019 48629019 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPATA21 374955 hgsc.bcm.edu 37 1 16725989 16725989 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA22 84690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3370723 3370723 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPATA24 202051 hgsc.bcm.edu;ucsc.edu 37 5 138737662 138737662 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA5 166378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123868400 123868400 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPATA5L1 79029 broad.mit.edu 37 15 45695510 45695510 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPATA5L1 79029 broad.mit.edu 37 15 45695555 45695555 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPATA5L1 79029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45706846 45706846 + Silent SNP T T C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPATA8 145946 hgsc.bcm.edu 37 15 97328235 97328235 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA9 83890 hgsc.bcm.edu 37 5 94994526 94994526 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATA9 83890 hgsc.bcm.edu 37 5 94994526 94994526 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATC1 375686 broad.mit.edu 37 8 145096167 145096167 + Silent SNP T G G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPATC1 375686 hgsc.bcm.edu 37 8 145086876 145086876 + Missense_Mutation SNP T T C rs60050811 bycluster;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATS2 65244 hgsc.bcm.edu;ucsc.edu 37 12 49854814 49854814 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATS2 65244 hgsc.bcm.edu;ucsc.edu 37 12 49884479 49884479 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPATS2L 26010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201304031 201304031 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPC25 57405 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 169745777 169745777 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPCS1 28972 broad.mit.edu 37 3 52742056 52742056 + 3'UTR SNP A T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPCS1 28972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52741704 52741704 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPCS3 60559 broad.mit.edu 37 4 177248330 177248330 + Silent SNP C T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPCS3 60559 broad.mit.edu 37 4 177250202 177250202 + 3'UTR DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDEF 25803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34506194 34506194 + Missense_Mutation SNP G G A rs148079586 unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SPDYA 245711 broad.mit.edu 37 2 29063384 29063384 + Intron SNP G A A rs13006361 bycluster;byfrequency;by1000genomes TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE1 285955 broad.mit.edu 37 7 44040585 44040585 + 5'UTR SNP G C C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE1 285955 broad.mit.edu 37 7 44048299 44048299 + 3'UTR SNP C T T rs183278732 by1000genomes TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE4 388333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8658873 8658873 + Silent SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPDYE4 388333 hgsc.bcm.edu 37 17 8660584 8660584 + Silent SNP G G C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPDYE6 729597 broad.mit.edu 37 7 101987478 101987478 + 3'UTR DEL C - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE6 729597 broad.mit.edu 37 7 101987478 101987478 + 3'UTR DEL C - - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE6 729597 broad.mit.edu 37 7 101987609 101987609 + 3'UTR SNP G A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE6 729597 broad.mit.edu 37 7 101987641 101987641 + 3'UTR SNP A G G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE6 729597 broad.mit.edu 37 7 101991206 101991206 + Silent SNP G A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE7P 441251 broad.mit.edu 37 7 72333538 72333538 + RNA SNP G A A rs146152373 by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE7P 441251 broad.mit.edu 37 7 72334607 72334607 + RNA SNP T C C rs75521930 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPDYE8P 389517 broad.mit.edu 37 7 72500251 72500251 + 5'UTR SNP C A A rs62464300 unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPECC1 92521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20000054 20000054 + Silent SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPECC1 92521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20107798 20107798 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPECC1 92521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20130773 20130773 + Silent SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPECC1 92521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20150580 20150580 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEF1 25876 broad.mit.edu;hgsc.bcm.edu 37 20 3759097 3759097 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEF2 79925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35759818 35759818 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEF2 79925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35771808 35771808 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEF2 79925 hgsc.bcm.edu;ucsc.edu 37 5 35700726 35700726 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEF2 79925 hgsc.bcm.edu;ucsc.edu 37 5 35800103 35800103 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPEG 10290 broad.mit.edu 37 2 220338227 220338227 + Silent SNP C A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPEG 10290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220333895 220333895 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEG 10290 hgsc.bcm.edu 37 2 220331989 220331990 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEG 10290 hgsc.bcm.edu 37 2 220331989 220331990 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEG 10290 hgsc.bcm.edu 37 2 220342464 220342464 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID SPEM1 374768 broad.mit.edu;ucsc.edu 37 17 7324820 7324820 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPEM1 374768 hgsc.bcm.edu;ucsc.edu 37 17 7324560 7324560 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPEN 23013 broad.mit.edu 37 1 16258574 16258574 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPEN 23013 broad.mit.edu;hgsc.bcm.edu 37 1 16256217 16256217 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16199600 16199600 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16203144 16203144 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16255505 16255505 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16256120 16256120 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16256538 16256538 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16257994 16257994 + Silent SNP T T C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16257995 16257995 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16259441 16259441 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16260060 16260060 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16260312 16260312 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16262076 16262076 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 hgsc.bcm.edu;ucsc.edu 37 1 16254657 16254658 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPEN 23013 hgsc.bcm.edu;ucsc.edu 37 1 16255323 16255323 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPESP1 246777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 69238414 69238414 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPESP1 246777 hgsc.bcm.edu 37 15 69237966 69237966 + Silent SNP A A G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPESP1 246777 hgsc.bcm.edu;ucsc.edu 37 15 69238350 69238350 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG11 80208 broad.mit.edu 37 15 44865552 44865564 + Intron DEL CATGTATTTTGTA - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 CATGTATTTTGTA CATGTATTTTGTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPG11 80208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44858475 44858475 + Silent SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG11 80208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44877930 44877930 + Silent SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG11 80208 hgsc.bcm.edu 37 15 44858098 44858099 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG21 51324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65255989 65255989 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG21 51324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65273294 65273294 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG21 51324 hgsc.bcm.edu;ucsc.edu 37 15 65266968 65266968 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPG7 6687 broad.mit.edu 37 16 89603452 89603452 + Intron SNP C T T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPG7 6687 broad.mit.edu;hgsc.bcm.edu 37 16 89616876 89616876 + Intron SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG7 6687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89595969 89595969 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG7 6687 hgsc.bcm.edu;ucsc.edu 37 16 89616909 89616910 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPG7 6687 hgsc.bcm.edu;ucsc.edu 37 16 89616935 89616935 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHK1 8877 broad.mit.edu 37 17 74383680 74383680 + 3'UTR SNP G A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPHK2 56848 broad.mit.edu 37 19 49131657 49131657 + Intron DEL C - - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPHK2 56848 broad.mit.edu 37 19 49133064 49133085 + 3'UTR DEL GCCTACATTCCAATGGGGCGGA - - novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 GCCTACATTCCAATGGGGCGGA GCCTACATTCCAATGGGGCGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPHK2 56848 broad.mit.edu 37 19 49133100 49133100 + 3'UTR SNP G A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPHK2 56848 broad.mit.edu;hgsc.bcm.edu 37 19 49129225 49129225 + Silent SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHK2 56848 broad.mit.edu;hgsc.bcm.edu 37 19 49131593 49131593 + Intron SNP T T C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHK2 56848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49129392 49129392 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228881360 228881360 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228881372 228881372 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228882779 228882779 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228882779 228882779 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228883287 228883287 + Silent SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228883640 228883640 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228886626 228886626 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228973613 228973613 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPHKAP 80309 hgsc.bcm.edu 37 2 229046345 229046345 + 5'UTR SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPI1 6688 broad.mit.edu 37 11 47380277 47380278 + Intron DEL CA - - rs35282035 bycluster;by1000genomes TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPIB 6689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50926246 50926246 + Silent SNP C C A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPIB 6689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50926877 50926877 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPIN1 10927 broad.mit.edu 37 9 91093032 91093032 + 3'UTR DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPIN2A 54466 broad.mit.edu;hgsc.bcm.edu 37 X 57162317 57162317 + Silent SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPIN3 169981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 57020792 57020794 + In_Frame_Del DEL GAG GAG - novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPIN3 169981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 57020876 57020876 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK13 153218 broad.mit.edu 37 5 147665762 147665762 + 3'UTR SNP T A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPINK2 6691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57677912 57677912 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK5 11005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147444913 147444913 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK5 11005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147481422 147481422 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK5 11005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147481423 147481423 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK5 11005 hgsc.bcm.edu;ucsc.edu 37 5 147451794 147451794 + Intron SNP T T G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK5 11005 hgsc.bcm.edu;ucsc.edu 37 5 147505289 147505289 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPINK8 646424 broad.mit.edu 37 3 48362546 48362546 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPINK9 643394 hgsc.bcm.edu;ucsc.edu 37 5 147718053 147718053 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPINLW1 0 broad.mit.edu 37 20 44171758 44171758 + Intron DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPINLW1 0 broad.mit.edu 37 20 44174195 44174195 + Intron SNP T G G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPINLW1 0 broad.mit.edu 37 20 44174554 44174554 + Intron SNP C A A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPINT1 6692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41136788 41136788 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPIRE1 56907 hgsc.bcm.edu 37 18 12454459 12454459 + Silent SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPIRE1 56907 hgsc.bcm.edu;ucsc.edu 37 18 12463349 12463349 + Splice_Site SNP C C G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPIRE2 84501 broad.mit.edu 37 16 89916879 89916880 + In_Frame_Ins INS - GAG GAG novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPIRE2 84501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89929985 89929985 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPN 6693 broad.mit.edu 37 16 29676379 29676379 + 3'UTR DEL T - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPN 6693 hgsc.bcm.edu 37 16 29675507 29675507 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPNS1 83985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28993800 28993800 + Silent SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPNS3 201305 broad.mit.edu 37 17 4381896 4381896 + Silent SNP G C C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPNS3 201305 broad.mit.edu 37 17 4391254 4391254 + 3'UTR SNP G T T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPNS3 201305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4389784 4389784 + Silent SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOCD1 90853 broad.mit.edu;hgsc.bcm.edu 37 1 32258019 32258019 + Intron SNP A A G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOCD1 90853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32259422 32259422 + Silent SNP G G T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOCD1 90853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32266115 32266115 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOCD1 90853 hgsc.bcm.edu 37 1 32280241 32280241 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPOCK1 6695 broad.mit.edu;hgsc.bcm.edu 37 5 136448175 136448175 + Silent SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOCK1 6695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 136328254 136328254 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOCK1 6695 hgsc.bcm.edu 37 5 136403473 136403473 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPOCK2 9806 broad.mit.edu 37 10 73822296 73822297 + 3'UTR DEL CA - - rs111643095 bycluster;by1000genomes TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPOCK2 9806 broad.mit.edu 37 10 73848106 73848106 + 5'UTR DEL G - - rs140781321 bycluster;by1000genomes TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPOCK3 50859 broad.mit.edu 37 4 167675635 167675635 + Intron SNP G A A rs2305593 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPOCK3 50859 hgsc.bcm.edu;ucsc.edu 37 4 167656201 167656201 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID SPON2 10417 hgsc.bcm.edu;ucsc.edu 37 4 1161269 1161270 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPOPL 339745 broad.mit.edu 37 2 139326739 139326739 + 3'UTR DEL G - - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPP1 6696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88904007 88904007 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPP1 6696 hgsc.bcm.edu;ucsc.edu 37 4 88902880 88902880 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPP2 6694 hgsc.bcm.edu;ucsc.edu 37 2 234959667 234959667 + Silent SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPPL2B 56928 broad.mit.edu 37 19 2339789 2339789 + Intron SNP C A A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPPL2B 56928 broad.mit.edu 37 19 2341103 2341103 + Intron DEL G - - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPPL2B 56928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2353056 2353056 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPPL3 121665 broad.mit.edu;ucsc.edu 37 12 121206288 121206288 + Missense_Mutation SNP A T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPR 6697 broad.mit.edu 37 2 73118740 73118740 + 3'UTR SNP A C C novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRED1 161742 broad.mit.edu 37 15 38545202 38545202 + 5'UTR DEL G - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRED1 161742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 38591742 38591742 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SPRED1 161742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 38616982 38616982 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SPRED1 161742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 38643311 38643311 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq SPRED1 161742 hgsc.bcm.edu;ucsc.edu 37 15 38632059 38632059 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM SOLID SPRED2 200734 broad.mit.edu 37 2 65540551 65540551 + 3'UTR SNP A G G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRED2 200734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65541212 65541212 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRR2A 6700 hgsc.bcm.edu;ucsc.edu 37 1 153029010 153029010 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPRR3 6707 broad.mit.edu 37 1 152976121 152976121 + 3'UTR SNP C A A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRR3 6707 hgsc.bcm.edu 37 1 152975659 152975682 + In_Frame_Del DEL GAGCCAGGCTGTACCAAGGTCCCT GAGCCAGGCTGTACCAAGGTCCCT - rs67156933 unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 GAGCCAGGCTGTACCAAGGTCCCT GAGCCAGGCTGTACCAAGGTCCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRR3 6707 hgsc.bcm.edu 37 1 152975715 152975715 + Silent SNP C C T rs63405761 bycluster;byfrequency;by1000genomes TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRY2 10253 broad.mit.edu 37 13 80911818 80911818 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRY2 10253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 80911095 80911095 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRY4 81848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141694601 141694601 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRY4 81848 hgsc.bcm.edu 37 5 141694415 141694415 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRYD4 283377 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56863103 56863103 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRYD5 0 broad.mit.edu 37 11 55653105 55653105 + Missense_Mutation SNP C A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRYD5 0 broad.mit.edu 37 11 55653110 55653110 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRYD5 0 broad.mit.edu 37 11 55653591 55653591 + Intron SNP T G G novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRYD5 0 broad.mit.edu;hgsc.bcm.edu 37 11 55658689 55658689 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPRYD5 0 broad.mit.edu;ucsc.edu 37 11 55653066 55653066 + Missense_Mutation SNP A T T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPRYD5 0 broad.mit.edu;ucsc.edu 37 11 55653128 55653128 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPSB1 80176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9415972 9415972 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPSB1 80176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9416147 9416147 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPSB1 80176 hgsc.bcm.edu;ucsc.edu 37 1 9416577 9416577 + Silent SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPSB2 84727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6981774 6981774 + Nonsense_Mutation SNP C C A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPSB3 90864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1827748 1827748 + Missense_Mutation SNP C C G rs147512809 unknown;alternate_allele TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPSB3 90864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1827748 1827748 + Missense_Mutation SNP C C G rs147512809 unknown;alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPSB3 90864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1828480 1828480 + Missense_Mutation SNP G G A rs150535227 unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158582607 158582607 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158582749 158582749 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158609713 158609713 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158618345 158618345 + Missense_Mutation SNP C C T rs148714399 by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158644146 158644146 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158646048 158646048 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158655094 158655094 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTA1 6708 broad.mit.edu;ucsc.edu 37 1 158609798 158609798 + Splice_Site SNP C G G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTA1 6708 hgsc.bcm.edu 37 1 158585040 158585040 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTA1 6708 hgsc.bcm.edu;ucsc.edu 37 1 158621257 158621257 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTAN1 6709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131331096 131331096 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTAN1 6709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131345086 131345086 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SPTAN1 6709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131371420 131371420 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTAN1 6709 hgsc.bcm.edu 37 9 131343279 131343279 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTAN1 6709 hgsc.bcm.edu 37 9 131390263 131390263 + Intron SNP G G C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTAN1 6709 hgsc.bcm.edu;ucsc.edu 37 9 131374049 131374049 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID SPTAN1 6709 hgsc.bcm.edu;ucsc.edu 37 9 131374053 131374053 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID SPTB 6710 broad.mit.edu 37 14 65241143 65241143 + Missense_Mutation SNP C T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTB 6710 broad.mit.edu;hgsc.bcm.edu 37 14 65230548 65230548 + Intron SNP G G C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTB 6710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65253682 65253682 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTB 6710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65253739 65253739 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTB 6710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65289684 65289684 + Silent SNP G G A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTB 6710 hgsc.bcm.edu 37 14 65237810 65237810 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTB 6710 hgsc.bcm.edu 37 14 65237810 65237810 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTB 6710 hgsc.bcm.edu 37 14 65264450 65264450 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN1 6711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54870209 54870209 + Silent SNP T T C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN1 6711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54871514 54871514 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN1 6711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54883108 54883108 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN1 6711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54891784 54891784 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN1 6711 hgsc.bcm.edu 37 2 54753688 54753688 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN2 6712 broad.mit.edu 37 11 66463961 66463961 + Silent SNP C A A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTBN2 6712 broad.mit.edu 37 11 66472256 66472256 + Nonsense_Mutation SNP C A A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTBN2 6712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66472813 66472813 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN2 6712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66483388 66483388 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN2 6712 hgsc.bcm.edu 37 11 66461311 66461312 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN2 6712 hgsc.bcm.edu 37 11 66466957 66466957 + Silent SNP C C T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN2 6712 hgsc.bcm.edu;ucsc.edu 37 11 66481623 66481623 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN2 6712 hgsc.bcm.edu;ucsc.edu 37 11 66483325 66483325 + Silent SNP G G A rs34117933 bycluster;byfrequency;by1000genomes TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN4 57731 broad.mit.edu;hgsc.bcm.edu 37 19 41040294 41040294 + Intron SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN4 57731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41066216 41066216 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN4 57731 hgsc.bcm.edu 37 19 41009982 41009982 + Silent SNP C C T rs71358911 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN4 57731 hgsc.bcm.edu 37 19 41062976 41062977 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN5 51332 broad.mit.edu 37 15 42175214 42175214 + Silent SNP C T T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTBN5 51332 broad.mit.edu;hgsc.bcm.edu 37 15 42150817 42150817 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN5 51332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42147094 42147094 + Silent SNP C C T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN5 51332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42173407 42173407 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN5 51332 hgsc.bcm.edu 37 15 42165753 42165753 + Silent SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTBN5 51332 hgsc.bcm.edu 37 15 42178134 42178135 + Frame_Shift_Del DEL CT CT - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTBN5 51332 hgsc.bcm.edu 37 15 42179542 42179542 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTLC1 10558 hgsc.bcm.edu 37 9 94843154 94843154 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SPTLC2 9517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78045381 78045381 + Silent SNP G G A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTLC3 55304 broad.mit.edu 37 20 12989653 12989653 + 5'UTR DEL T - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTLC3 55304 broad.mit.edu 37 20 12989763 12989763 + 5'UTR SNP G A A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPTY2D1 144108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18636132 18636132 + Silent SNP T T G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPTY2D1 144108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18636763 18636763 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPZ1 84654 broad.mit.edu 37 5 79616434 79616434 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SPZ1 84654 broad.mit.edu;hgsc.bcm.edu 37 5 79616440 79616440 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPZ1 84654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79616637 79616637 + Silent SNP C C T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPZ1 84654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79616823 79616823 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SPZ1 84654 hgsc.bcm.edu;ucsc.edu 37 5 79616716 79616716 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SQRDL 58472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45962137 45962137 + Silent SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SQRDL 58472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45965852 45965852 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SQSTM1 8878 broad.mit.edu 37 5 179264300 179264300 + 3'UTR SNP A C C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SR140 0 broad.mit.edu 37 3 142775514 142775514 + 3'UTR DEL T - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRA1 10011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139930679 139930679 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRA1 10011 hgsc.bcm.edu 37 5 139931629 139931629 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRA1 10011 hgsc.bcm.edu 37 5 139931629 139931629 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRBD1 55133 broad.mit.edu 37 2 45616439 45616439 + 3'UTR SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRBD1 55133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 45620107 45620107 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRBD1 55133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 45832575 45832575 + Silent SNP T T A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRBD1 55133 hgsc.bcm.edu;ucsc.edu 37 2 45774690 45774690 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRBD1 55133 hgsc.bcm.edu;ucsc.edu 37 2 45800364 45800364 + Silent SNP T T C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRC 6714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36024602 36024602 + Silent SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRC 6714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36024642 36024642 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SRC 6714 hgsc.bcm.edu 37 20 36028584 36028584 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRCAP 10847 broad.mit.edu 37 16 30750868 30750868 + Silent SNP A G G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRCAP 10847 broad.mit.edu;hgsc.bcm.edu 37 16 30734026 30734026 + Silent SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCAP 10847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30734516 30734516 + Silent SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCAP 10847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30735820 30735820 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCAP 10847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30740445 30740445 + Silent SNP T T C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCAP 10847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30747584 30747584 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCAP 10847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30749422 30749422 + Silent SNP A A T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCIN1 80725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36708271 36708271 + Missense_Mutation SNP A A C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRCIN1 80725 broad.mit.edu 37 17 36717995 36717996 + Frame_Shift_Ins INS - A A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRD5A3 79644 hgsc.bcm.edu;ucsc.edu 37 4 56236195 56236195 + Silent SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SREBF1 6720 broad.mit.edu 37 17 17720979 17720979 + Intron SNP T G G novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SREBF1 6720 broad.mit.edu 37 17 17740165 17740165 + 5'UTR DEL C - - rs143925746 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SREBF1 6720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17723754 17723754 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SREBF1 6720 hgsc.bcm.edu 37 17 17716753 17716754 + Frame_Shift_Ins INS - - C novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SREBF1 6720 hgsc.bcm.edu 37 17 17722891 17722891 + Silent SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SREBF2 6721 broad.mit.edu 37 22 42276853 42276853 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SREBF2 6721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42273293 42273293 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SREBF2 6721 hgsc.bcm.edu 37 22 42269953 42269953 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SREK1 140890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 65455077 65455077 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SREK1 140890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 65458025 65458025 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SREK1 140890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 65465917 65465917 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SREK1IP1 285672 hgsc.bcm.edu 37 5 64020311 64020311 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SREK1IP1 285672 hgsc.bcm.edu 37 5 64020316 64020316 + Missense_Mutation SNP T T G rs80170948 bycluster;byfrequency;by1000genomes TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRF 6722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43146557 43146557 + Silent SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRF 6722 hgsc.bcm.edu;ucsc.edu 37 6 43143556 43143556 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRFBP1 153443 hgsc.bcm.edu;ucsc.edu 37 5 121311095 121311095 + Intron SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP1 57522 broad.mit.edu 37 12 64377712 64377712 + Intron SNP C T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRGAP1 57522 broad.mit.edu 37 12 64539668 64539668 + 3'UTR DEL G - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRGAP1 57522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64377783 64377783 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP1 57522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64377845 64377845 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP1 57522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64536075 64536075 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP1 57522 hgsc.bcm.edu;ucsc.edu 37 12 64472751 64472752 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP2 23380 broad.mit.edu 37 1 206635245 206635246 + 3'UTR INS - AC AC rs144856136 by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRGAP2 23380 broad.mit.edu;hgsc.bcm.edu 37 1 206516309 206516309 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP2 23380 hgsc.bcm.edu 37 1 206566903 206566903 + Silent SNP G G A rs71633585 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRGAP3 9901 broad.mit.edu 37 3 9068661 9068661 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRGAP3 9901 broad.mit.edu 37 3 9101809 9101809 + Intron SNP C A A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRGAP3 9901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9034602 9034602 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRL 6345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4245571 4245571 + Missense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRL 6345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4245640 4245640 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRL 6345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4247843 4247843 + Silent SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRMS 6725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62174694 62174694 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRP19 6728 broad.mit.edu 37 5 112228273 112228273 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRP68 6730 broad.mit.edu;hgsc.bcm.edu 37 17 74041394 74041394 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRP68 6730 broad.mit.edu;hgsc.bcm.edu 37 17 74042206 74042206 + Silent SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRP68 6730 hgsc.bcm.edu;ucsc.edu 37 17 74053509 74053509 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRP72 6731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57349375 57349375 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRP72 6731 hgsc.bcm.edu 37 4 57333822 57333822 + Silent SNP G G T rs12513091 bycluster;byfrequency;byhapmap;by1000genomes TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRP72 6731 hgsc.bcm.edu 37 4 57335832 57335832 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRP72 6731 hgsc.bcm.edu;ucsc.edu 37 4 57366826 57366826 + Silent SNP G G C rs143643243 byfrequency;alternate_allele TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRP9 6726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225971002 225971002 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRPK2 6733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104844182 104844182 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRPK2 6733 hgsc.bcm.edu 37 7 104783695 104783695 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRPK3 26576 hgsc.bcm.edu 37 X 153047007 153047007 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRPK3 26576 hgsc.bcm.edu 37 X 153047253 153047253 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRPX2 27286 hgsc.bcm.edu;ucsc.edu 37 X 99922295 99922295 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRPX 8406 hgsc.bcm.edu;ucsc.edu 37 X 38024095 38024095 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRD 402055 hgsc.bcm.edu 37 22 26886035 26886035 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRD 402055 hgsc.bcm.edu;ucsc.edu 37 22 26884408 26884408 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM1 10250 broad.mit.edu 37 1 24999031 24999032 + 3'UTR INS - A A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SRRM1 10250 broad.mit.edu;hgsc.bcm.edu 37 1 24993365 24993365 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRM1 10250 hgsc.bcm.edu 37 1 24995884 24995884 + Silent SNP C C G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM2 23524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2809006 2809006 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRM2 23524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2809634 2809634 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRM2 23524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2817282 2817282 + Silent SNP A A T rs111703345 unknown;alternate_allele TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRM2 23524 hgsc.bcm.edu 37 16 2807932 2807932 + Silent SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM2 23524 hgsc.bcm.edu 37 16 2816400 2816400 + Silent SNP G G A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM2 23524 hgsc.bcm.edu 37 16 2816400 2816400 + Silent SNP G G A novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM2 23524 hgsc.bcm.edu;ucsc.edu 37 16 2807887 2807887 + Silent SNP T T C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM4 84530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 119552153 119552153 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRM4 84530 hgsc.bcm.edu 37 12 119583248 119583248 + Silent SNP G G A rs78239403 by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM4 84530 hgsc.bcm.edu;ucsc.edu 37 12 119591354 119591354 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRM5 100170229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44116657 44116657 + Silent SNP A A C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRT 51593 broad.mit.edu;hgsc.bcm.edu 37 7 100486192 100486192 + 3'UTR SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRT 51593 broad.mit.edu;hgsc.bcm.edu 37 7 100486204 100486204 + 3'UTR SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRT 51593 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100483954 100483954 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRT 51593 hgsc.bcm.edu 37 7 100478987 100478987 + Silent SNP A A G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRRT 51593 hgsc.bcm.edu;ucsc.edu 37 7 100479746 100479746 + Silent SNP C C G rs143241109 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRRT 51593 hgsc.bcm.edu;ucsc.edu 37 7 100479850 100479850 + Missense_Mutation SNP A A C novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF1 6426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56084396 56084396 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF11 9295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70694139 70694139 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF11 9295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70712550 70712550 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2 6427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74732441 74732441 + Silent SNP T T C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46318555 46318555 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46318557 46318557 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46321850 46321850 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46322466 46322466 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46328263 46328263 + Silent SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46355548 46355548 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF2IP 0 hgsc.bcm.edu 37 12 46322579 46322579 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRSF4 6429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29475063 29475063 + Silent SNP G G C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF4 6429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29481292 29481292 + Missense_Mutation SNP A A G rs111495066 unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF4 6429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29481370 29481370 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF4 6429 hgsc.bcm.edu 37 1 29475160 29475160 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRSF5 6430 hgsc.bcm.edu;ucsc.edu 37 14 70234985 70234985 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SRSF6 6431 broad.mit.edu;hgsc.bcm.edu 37 20 42087921 42087921 + RNA SNP A A G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF7 6432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 38975784 38975784 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF7 6432 hgsc.bcm.edu;ucsc.edu 37 2 38973913 38973913 + Intron SNP C C T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SRSF9 8683 hgsc.bcm.edu;ucsc.edu 37 12 120899955 120899955 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SS18 6760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 23619298 23619298 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SS18 6760 hgsc.bcm.edu 37 18 23637608 23637608 + Silent SNP T T A novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SS18 6760 hgsc.bcm.edu;ucsc.edu 37 18 23632629 23632629 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SS18L1 26039 broad.mit.edu;hgsc.bcm.edu 37 20 60718863 60718863 + 5'UTR SNP C C T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SS18L1 26039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60754289 60754289 + 3'UTR SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSBP2 23635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80911317 80911317 + Missense_Mutation SNP C C A rs11555880 unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSBP3 23648 hgsc.bcm.edu 37 1 54722777 54722777 + Intron SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSBP4 170463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18543023 18543023 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSC5D 284297 hgsc.bcm.edu 37 19 56011915 56011915 + Silent SNP G G A rs61107130 bycluster;byfrequency;by1000genomes TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSC5D 284297 hgsc.bcm.edu 37 19 56029201 56029201 + Missense_Mutation SNP C C A rs74585733 bycluster;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSC5D 284297 hgsc.bcm.edu 37 19 56029543 56029543 + Silent SNP C C T rs114559746 bycluster;byfrequency;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSC5D 284297 hgsc.bcm.edu 37 19 56029556 56029556 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSC5D 284297 hgsc.bcm.edu 37 19 56029577 56029577 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSC5D 284297 hgsc.bcm.edu 37 19 56029606 56029606 + Silent SNP G G A rs76326175 bycluster;byfrequency;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSC5D 284297 hgsc.bcm.edu 37 19 56029914 56029916 + In_Frame_Del DEL CCA CCA - rs140718732 by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 CCA CCA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSFA2 6744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 182757372 182757372 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSFA2 6744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 182766972 182766972 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSFA2 6744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 182774683 182774683 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSFA2 6744 hgsc.bcm.edu 37 2 182765606 182765606 + Silent SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSFA2 6744 hgsc.bcm.edu;ucsc.edu 37 2 182760745 182760745 + Intron SNP A A G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSH1 54434 broad.mit.edu 37 12 109210974 109210974 + Intron SNP G C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSH1 54434 broad.mit.edu 37 12 109211047 109211047 + Intron DEL A - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSH1 54434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109182653 109182653 + Missense_Mutation SNP G G A rs151176410 byfrequency TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH1 54434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109186220 109186220 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH2 85464 broad.mit.edu 37 17 27953391 27953391 + 3'UTR DEL G - - rs138775358 bycluster;by1000genomes TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSH2 85464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27959837 27959837 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH2 85464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27977810 27977810 + Missense_Mutation SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH2 85464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27999019 27999019 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH2 85464 hgsc.bcm.edu;ucsc.edu 37 17 27958639 27958642 + Frame_Shift_Del DEL CTGA CTGA - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 CTGA CTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH2 85464 hgsc.bcm.edu;ucsc.edu 37 17 28022502 28022502 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSH3 54961 broad.mit.edu;hgsc.bcm.edu 37 11 67079361 67079361 + 3'UTR SNP C C T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSH3 54961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67072383 67072383 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSNA1 8636 broad.mit.edu;hgsc.bcm.edu 37 9 140083619 140083619 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 broad.mit.edu 37 7 149482073 149482073 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSPO 23145 broad.mit.edu 37 7 149486279 149486279 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSPO 23145 broad.mit.edu 37 7 149515189 149515189 + Splice_Site DEL A - - rs112122477 unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSPO 23145 broad.mit.edu;hgsc.bcm.edu 37 7 149486417 149486417 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 149480310 149480310 + Silent SNP A A C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 149485496 149485496 + Silent SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 hgsc.bcm.edu 37 7 149473432 149473432 + Intron SNP C C T rs141128321 by1000genomes TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 hgsc.bcm.edu 37 7 149476666 149476667 + Frame_Shift_Ins INS - - C rs111343201 bycluster;by1000genomes TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 hgsc.bcm.edu 37 7 149476666 149476667 + Frame_Shift_Ins INS - - C rs111343201 bycluster;by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 hgsc.bcm.edu 37 7 149480201 149480201 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSPO 23145 hgsc.bcm.edu 37 7 149512019 149512019 + Silent SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSPO 23145 hgsc.bcm.edu 37 7 149515189 149515189 + Frame_Shift_Del DEL A A - rs112122477 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 hgsc.bcm.edu 37 7 149516805 149516805 + Splice_Site SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSPO 23145 hgsc.bcm.edu 37 7 149516839 149516839 + Frame_Shift_Del DEL C C - rs145311298 by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSPO 23145 hgsc.bcm.edu;ucsc.edu 37 7 149502986 149502986 + Silent SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSR1 6745 broad.mit.edu 37 6 7282105 7282105 + 3'UTR DEL T - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSR2 6746 broad.mit.edu 37 1 155981770 155981770 + Intron SNP A C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSR2 6746 hgsc.bcm.edu 37 1 155979424 155979424 + Silent SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSR4 6748 hgsc.bcm.edu;ucsc.edu 37 X 153063555 153063555 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSRP1 6749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57099909 57099909 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSRP1 6749 hgsc.bcm.edu;ucsc.edu 37 11 57100524 57100524 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSSCA1 10534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65338194 65338194 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SST 6750 hgsc.bcm.edu 37 3 187388007 187388007 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSTR1 6751 broad.mit.edu;hgsc.bcm.edu 37 14 38678641 38678641 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSTR1 6751 hgsc.bcm.edu 37 14 38679408 38679409 + Frame_Shift_Ins INS - - TG novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSTR3 6753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37603580 37603580 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSTR4 6754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23016583 23016583 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSTR4 6754 hgsc.bcm.edu 37 20 23016318 23016318 + Silent SNP C C A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSU72 29101 broad.mit.edu 37 1 1510036 1510037 + 5'UTR DEL GC - - rs150737039 bycluster;by1000genomes TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSX1(dist=32213) 0 broad.mit.edu;hgsc.bcm.edu 37 X 48159092 48159092 + IGR SNP G G T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSX2IP 117178 broad.mit.edu 37 1 85112985 85112985 + 3'UTR SNP C T T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SSX2IP 117178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85117618 85117618 + Silent SNP G G T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSX2IP 117178 hgsc.bcm.edu 37 1 85124045 85124045 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSX2IP 117178 hgsc.bcm.edu;ucsc.edu 37 1 85117601 85117601 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSX2IP 117178 hgsc.bcm.edu;ucsc.edu 37 1 85124037 85124037 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SSX5 6758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48053635 48053635 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSX7 280658 hgsc.bcm.edu 37 X 52676075 52676075 + Intron SNP A A C novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SSX8 280659 hgsc.bcm.edu;ucsc.edu 37 X 52655407 52655407 + 5'UTR SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST13 6767 hgsc.bcm.edu;ucsc.edu 37 22 41246824 41246824 + Intron SNP T T C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST14 6768 broad.mit.edu 37 11 130079781 130079781 + 3'UTR SNP G T T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST14 6768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130058115 130058115 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST14 6768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130064609 130064609 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST14 6768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130066577 130066577 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST14 6768 hgsc.bcm.edu;ucsc.edu 37 11 130069949 130069949 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST18 9705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 53085059 53085059 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST18 9705 hgsc.bcm.edu 37 8 53074097 53074097 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST18 9705 hgsc.bcm.edu 37 8 53124700 53124700 + Intron SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST3GAL1 6482 broad.mit.edu;ucsc.edu 37 8 134478309 134478309 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST3GAL1 6482 hgsc.bcm.edu 37 8 134488010 134488010 + Silent SNP C C T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST3GAL3 6487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44365370 44365370 + Silent SNP T T C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST3GAL3 6487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44386570 44386570 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST3GAL4 6484 broad.mit.edu 37 11 126276767 126276767 + Intron SNP C A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST3GAL4 6484 broad.mit.edu 37 11 126284026 126284026 + 3'UTR SNP A G G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST3GAL4 6484 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 126283944 126283944 + 3'UTR SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST3GAL4 6484 hgsc.bcm.edu;ucsc.edu 37 11 126283465 126283465 + Silent SNP C C T novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST3GAL5 8869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86071563 86071563 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST3GAL6 10402 hgsc.bcm.edu 37 3 98503802 98503802 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST5 6764 broad.mit.edu 37 11 8752274 8752274 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GAL1 6480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186761061 186761061 + Silent SNP G G A rs141692826 unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GAL2 84620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 107460175 107460175 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GAL2 84620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 107460218 107460218 + Silent SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GALNAC1 55808 broad.mit.edu 37 17 74621351 74621351 + 3'UTR SNP G C C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC1 55808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74622132 74622132 + Silent SNP C C T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GALNAC1 55808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74625522 74625522 + Missense_Mutation SNP T T C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GALNAC2 10610 broad.mit.edu 37 17 74562178 74562178 + 3'UTR SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC2 10610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74563616 74563616 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GALNAC2 10610 hgsc.bcm.edu;ucsc.edu 37 17 74562266 74562266 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST6GALNAC3 256435 hgsc.bcm.edu;ucsc.edu 37 1 77094396 77094396 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST6GALNAC3 256435 hgsc.bcm.edu;ucsc.edu 37 1 77094481 77094482 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST6GALNAC4 27090 broad.mit.edu 37 9 130678760 130678760 + 5'UTR SNP T G G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC4 27090 broad.mit.edu 37 9 130678760 130678760 + 5'UTR SNP T G G novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC4 27090 broad.mit.edu 37 9 130678772 130678772 + 5'UTR SNP A C C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC4 27090 broad.mit.edu 37 9 130678772 130678772 + 5'UTR SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC5 81849 broad.mit.edu 37 1 77334292 77334293 + In_Frame_Ins INS - CAGCAA CAGCAA rs113832855 unknown;alternate_allele TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST6GALNAC5 81849 broad.mit.edu;hgsc.bcm.edu 37 1 77510087 77510087 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST7 7982 broad.mit.edu 37 7 116863308 116863308 + 3'UTR SNP T C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST7 7982 broad.mit.edu 37 7 116869938 116869938 + Missense_Mutation SNP A C C novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST7 7982 broad.mit.edu 37 7 116870009 116870009 + Silent SNP G A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST7 7982 hgsc.bcm.edu;ucsc.edu 37 7 116849867 116849867 + Missense_Mutation SNP C C G novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST7L 54879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113098583 113098583 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST7L 54879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113124710 113124710 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST7L 54879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113124711 113124711 + Silent SNP A A T novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST7L 54879 hgsc.bcm.edu 37 1 113084576 113084576 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST8SIA1 6489 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22354654 22354654 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST8SIA1 6489 hgsc.bcm.edu 37 12 22354703 22354703 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST8SIA1 6489 hgsc.bcm.edu;ucsc.edu 37 12 22440140 22440140 + Silent SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST8SIA2 8128 broad.mit.edu 37 15 93010431 93010431 + 3'UTR DEL A - - novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST8SIA3 51046 broad.mit.edu 37 18 55020027 55020027 + 5'UTR SNP C A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST8SIA3 51046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55027490 55027490 + Silent SNP T T A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST8SIA3 51046 broad.mit.edu;ucsc.edu 37 18 55020256 55020256 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST8SIA4 7903 broad.mit.edu 37 5 100147426 100147426 + 3'UTR SNP C A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ST8SIA4 7903 hgsc.bcm.edu;ucsc.edu 37 5 100147701 100147701 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST8SIA4 7903 hgsc.bcm.edu;ucsc.edu 37 5 100192026 100192026 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ST8SIA5 29906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44268797 44268797 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ST8SIA6 338596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17432566 17432566 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAB1 23166 broad.mit.edu 37 3 52553461 52553461 + Intron SNP T G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAB2 55576 broad.mit.edu 37 12 103981134 103981134 + 5'UTR SNP A T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAB2 55576 broad.mit.edu;hgsc.bcm.edu 37 12 104126850 104126850 + Missense_Mutation SNP G G A rs147807697 by1000genomes;alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104056757 104056757 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104062492 104062492 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104071251 104071251 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104107496 104107496 + Missense_Mutation SNP G G A rs141685549 by1000genomes TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAC2 342667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37369246 37369246 + Splice_Site SNP A A C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAC2 342667 hgsc.bcm.edu 37 17 37369807 37369807 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAC2 342667 hgsc.bcm.edu 37 17 37374147 37374147 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAC3 246329 hgsc.bcm.edu 37 12 57639004 57639004 + Intron SNP G G T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAC3 246329 hgsc.bcm.edu;ucsc.edu 37 12 57638679 57638679 + Intron SNP C C T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG1 10274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 136062787 136062787 + Silent SNP G G T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG1 10274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 136170989 136170989 + Silent SNP C C T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG1 10274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 136240212 136240212 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG1 10274 broad.mit.edu;ucsc.edu 37 3 136062774 136062774 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG1 10274 hgsc.bcm.edu;ucsc.edu 37 3 136076625 136076625 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAG1 10274 hgsc.bcm.edu;ucsc.edu 37 3 136141378 136141379 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG2 10735 broad.mit.edu;hgsc.bcm.edu 37 X 123197044 123197044 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STAG2 10735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123179154 123179154 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STAG2 10735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123179198 123179198 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STAG2 10735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123184076 123184076 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STAG2 10735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123197875 123197875 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STAG2 10735 hgsc.bcm.edu;ucsc.edu 37 X 123195628 123195629 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STAG3 10734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99801730 99801730 + Silent SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG3 10734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99801731 99801731 + Silent SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG3 10734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99811404 99811404 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAG3 10734 hgsc.bcm.edu 37 7 99783914 99783914 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAG3 10734 hgsc.bcm.edu 37 7 99796170 99796170 + Silent SNP C C T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAG3L2 442582 broad.mit.edu 37 7 74298857 74298857 + RNA SNP T C C rs1635764 bycluster TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74299371 74299371 + 3'UTR SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74299903 74299903 + Frame_Shift_Del DEL C - - novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 AGAGCTCC AGAGCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 AGAGCTCC AGAGCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 AGAGCTCC AGAGCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 AGAGCTCC AGAGCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 AGAGCTCC AGAGCTCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAM2 10254 hgsc.bcm.edu;ucsc.edu 37 2 152988706 152988706 + Intron SNP A A G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAM 8027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17750824 17750824 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAM 8027 hgsc.bcm.edu;ucsc.edu 37 10 17737083 17737085 + In_Frame_Del DEL TCA TCA - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 TCA TCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAMBP 10617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74087228 74087228 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAMBP 10617 hgsc.bcm.edu 37 2 74074605 74074605 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAMBPL1 57559 broad.mit.edu 37 10 90668576 90668576 + Intron SNP A G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAMBPL1 57559 broad.mit.edu 37 10 90698146 90698146 + Intron SNP A C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAMBPL1 57559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90682964 90682964 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAP1 26228 hgsc.bcm.edu;ucsc.edu 37 4 68436805 68436805 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAP2 55620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4325497 4325497 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAR 6770 broad.mit.edu 37 8 38008507 38008507 + 5'UTR SNP C G G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAR 6770 broad.mit.edu;hgsc.bcm.edu 37 8 38001871 38001871 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD13 90627 broad.mit.edu;hgsc.bcm.edu 37 13 33684212 33684212 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD13 90627 hgsc.bcm.edu 37 13 33712950 33712950 + Intron SNP T T C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STARD13 90627 hgsc.bcm.edu;ucsc.edu 37 13 33716508 33716508 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD3 10948 broad.mit.edu;hgsc.bcm.edu 37 17 37809762 37809762 + 5'UTR SNP C C T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD3 10948 broad.mit.edu;hgsc.bcm.edu 37 17 37815807 37815807 + Splice_Site SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD3 10948 hgsc.bcm.edu;ucsc.edu 37 17 37816464 37816464 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STARD3NL 83930 hgsc.bcm.edu;ucsc.edu 37 7 38256830 38256830 + Silent SNP T T A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STARD3NL(dist=18678) 0 broad.mit.edu;hgsc.bcm.edu 37 7 38288948 38288948 + IGR SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD4 134429 broad.mit.edu 37 5 110835388 110835388 + 3'UTR DEL A - - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STARD6 147323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 51863590 51863590 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD7 56910 broad.mit.edu 37 2 96850807 96850808 + 3'UTR DEL TC - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STARD7 56910 broad.mit.edu;hgsc.bcm.edu 37 2 96861119 96861119 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD7 56910 hgsc.bcm.edu;ucsc.edu 37 2 96860708 96860708 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STARD9 57519 hgsc.bcm.edu 37 15 42961446 42961446 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID STARD9 57519 hgsc.bcm.edu 37 15 42978600 42978600 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID STARD9 57519 hgsc.bcm.edu;ucsc.edu 37 15 42976364 42976364 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STARD9 57519 hgsc.bcm.edu;ucsc.edu 37 15 42977628 42977628 + Silent SNP T T C rs143692879 by1000genomes TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID STARD9 57519 hgsc.bcm.edu;ucsc.edu 37 15 42978065 42978065 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID STARD9 57519 hgsc.bcm.edu;ucsc.edu 37 15 42979926 42979926 + Silent SNP A A G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID STARD9 57519 hgsc.bcm.edu;ucsc.edu 37 15 42985732 42985732 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID STAT1 6772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191864399 191864399 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT1 6772 hgsc.bcm.edu 37 2 191862646 191862646 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAT1 6772 hgsc.bcm.edu;ucsc.edu 37 2 191849113 191849113 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4777-01A-01D-1366-10 TCGA-BP-4777-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAT1 6772 hgsc.bcm.edu;ucsc.edu 37 2 191874614 191874614 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAT2 6773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56745117 56745117 + Silent SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT2 6773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56748290 56748290 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT2 6773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56750313 56750313 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT2 6773 hgsc.bcm.edu 37 12 56744656 56744656 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAT3 6774 broad.mit.edu;hgsc.bcm.edu 37 17 40476790 40476790 + Silent SNP G G A rs1064115 bycluster;alternate_allele TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT3 6774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40485988 40485988 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT4 6775 broad.mit.edu;hgsc.bcm.edu 37 2 191897638 191897638 + Intron SNP C C G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT4 6775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191900934 191900934 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT5A 6776 broad.mit.edu 37 17 40461539 40461539 + Intron SNP C G G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAT5B 6777 broad.mit.edu;hgsc.bcm.edu 37 17 40370140 40370140 + Intron SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT5B 6777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40359718 40359718 + Silent SNP A A G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT5B 6777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40371847 40371847 + Silent SNP C C T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT5B 6777 hgsc.bcm.edu 37 17 40375493 40375493 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAT6 6778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57493192 57493192 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT6 6778 hgsc.bcm.edu 37 12 57499020 57499021 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT6 6778 hgsc.bcm.edu 37 12 57499020 57499021 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAT6 6778 hgsc.bcm.edu;ucsc.edu 37 12 57501489 57501489 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STATH 6779 hgsc.bcm.edu 37 4 70865494 70865494 + Intron SNP C C A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAU1 6780 broad.mit.edu 37 20 47731337 47731337 + 3'UTR SNP A T T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAU1 6780 hgsc.bcm.edu;ucsc.edu 37 20 47739735 47739735 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAU2 27067 broad.mit.edu 37 8 74464094 74464095 + Intron DEL TT - - novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STAU2 27067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74440017 74440017 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAU2 27067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74527933 74527933 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAU2 27067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74527934 74527934 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STAU2 27067 hgsc.bcm.edu 37 8 74515976 74515976 + Silent SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STAU2 27067 hgsc.bcm.edu 37 8 74650475 74650475 + Intron SNP C C G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STC1 6781 hgsc.bcm.edu 37 8 23702339 23702339 + Silent SNP G G T rs143563807 unknown;alternate_allele TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STC2 8614 broad.mit.edu 37 5 172743119 172743119 + 3'UTR DEL T - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STC2 8614 broad.mit.edu 37 5 172755709 172755709 + 5'UTR SNP G T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STC2 8614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 172745139 172745139 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STC2 8614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 172755100 172755100 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STEAP1 26872 broad.mit.edu 37 7 89790291 89790291 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STEAP1 26872 broad.mit.edu 37 7 89791288 89791288 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STEAP3 55240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120012306 120012306 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STEAP3 55240 hgsc.bcm.edu 37 2 120003082 120003090 + In_Frame_Del DEL GAGATGGAC GAGATGGAC - novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 GAGATGGAC GAGATGGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STEAP4 79689 broad.mit.edu 37 7 87905889 87905889 + 3'UTR DEL T - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STH 246744 broad.mit.edu 37 17 44076968 44076968 + Missense_Mutation SNP A C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STIL 6491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47717395 47717395 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STIL 6491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47725984 47725984 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STIL 6491 hgsc.bcm.edu 37 1 47728583 47728583 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STIM1 6786 hgsc.bcm.edu;ucsc.edu 37 11 3988829 3988829 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STIP1 10963 broad.mit.edu 37 11 63971881 63971881 + 3'UTR DEL T - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STIP1 10963 hgsc.bcm.edu 37 11 63965325 63965325 + Splice_Site SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK10 6793 broad.mit.edu 37 5 171469753 171469753 + 3'UTR DEL C - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK10 6793 broad.mit.edu;hgsc.bcm.edu 37 5 171481605 171481605 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK11 6794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1220429 1220429 + Silent SNP C C T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK11 6794 hgsc.bcm.edu 37 19 1220427 1220427 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK11 6794 hgsc.bcm.edu 37 19 1220429 1220429 + Silent SNP C C T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK11IP 114790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220465991 220465991 + Silent SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK11IP 114790 hgsc.bcm.edu 37 2 220466384 220466384 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK11IP 114790 hgsc.bcm.edu 37 2 220466798 220466798 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK11IP 114790 hgsc.bcm.edu 37 2 220466798 220466798 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK11IP 114790 hgsc.bcm.edu 37 2 220467482 220467482 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK11IP 114790 hgsc.bcm.edu 37 2 220478482 220478482 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK16 8576 broad.mit.edu 37 2 220113490 220113490 + 3'UTR DEL G - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK17B 9262 broad.mit.edu 37 2 197001229 197001229 + 3'UTR SNP A T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK17B 9262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197002269 197002269 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK24 8428 hgsc.bcm.edu;ucsc.edu 37 13 99118770 99118771 + Frame_Shift_Ins INS - - A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK25 10494 broad.mit.edu 37 2 242435659 242435662 + Intron DEL AAGG - - rs150919895 bycluster;by1000genomes TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 AAGG AAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK25 10494 broad.mit.edu 37 2 242435659 242435662 + Intron DEL AAGG - - rs150919895 bycluster;by1000genomes TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 AAGG AAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK31 56164 broad.mit.edu 37 7 23749854 23749854 + 5'UTR SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx STK31 56164 broad.mit.edu 37 7 23750185 23750185 + Intron SNP C A A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx STK31 56164 broad.mit.edu 37 7 23802525 23802525 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx STK31 56164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23775341 23775341 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STK31 56164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23826468 23826468 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STK31 56164 hgsc.bcm.edu;ucsc.edu 37 7 23821077 23821077 + Nonsense_Mutation SNP G G T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM SOLID STK31 56164 hgsc.bcm.edu;ucsc.edu 37 7 23827642 23827642 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq STK32B 55351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 5461876 5461876 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK32C 282974 hgsc.bcm.edu 37 10 134036270 134036270 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK33 65975 hgsc.bcm.edu 37 11 8414087 8414088 + In_Frame_Ins INS - - CCAGAA novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK33 65975 hgsc.bcm.edu 37 11 8457118 8457118 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK35 140901 hgsc.bcm.edu;ucsc.edu 37 20 2097952 2097952 + Silent SNP T T A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK36 27148 broad.mit.edu 37 2 219557312 219557312 + Missense_Mutation SNP C T T rs145717046 unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK36 27148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219561786 219561786 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq STK38 11329 broad.mit.edu 37 6 36508022 36508022 + 5'UTR SNP T A A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK38L 23012 broad.mit.edu 37 12 27470675 27470675 + Intron SNP T A A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK39 27347 hgsc.bcm.edu;ucsc.edu 37 2 168931479 168931479 + Intron SNP A A G novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STK40 83931 broad.mit.edu 37 1 36808001 36808001 + Intron DEL G - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STK40 83931 hgsc.bcm.edu 37 1 36814314 36814314 + Silent SNP G G T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STK4 6789 broad.mit.edu;hgsc.bcm.edu 37 20 43629183 43629183 + Intron SNP G G A novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STL 7955 broad.mit.edu 37 6 125233608 125233608 + RNA SNP T C C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STL 7955 broad.mit.edu;hgsc.bcm.edu 37 6 125231888 125231888 + RNA SNP T T G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STL 7955 broad.mit.edu;hgsc.bcm.edu 37 6 125233396 125233396 + RNA SNP A A T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STMN1 3925 hgsc.bcm.edu;ucsc.edu 37 1 26231194 26231194 + 5'UTR SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STMN2 11075 broad.mit.edu 37 8 80577225 80577225 + Intron DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STMN2 11075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 80549106 80549106 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STMN3 50861 broad.mit.edu;hgsc.bcm.edu 37 20 62275107 62275107 + Splice_Site SNP G G T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STMN3 50861 hgsc.bcm.edu;ucsc.edu 37 20 62275589 62275589 + Silent SNP G G A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STOM 2040 broad.mit.edu 37 9 124103031 124103031 + 3'UTR DEL A - - rs112393069 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STON1 11037 hgsc.bcm.edu;ucsc.edu 37 2 48807891 48807891 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STON1-GTF2A1L 286749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48809434 48809434 + Silent SNP G G A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STON2 85439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 81736986 81736986 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STON2 85439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 81736987 81736987 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STON2 85439 hgsc.bcm.edu 37 14 81744471 81744471 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STON2 85439 hgsc.bcm.edu;ucsc.edu 37 14 81744156 81744156 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STOX2 56977 hgsc.bcm.edu;ucsc.edu 37 4 184930539 184930539 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STRA13 201254 broad.mit.edu;hgsc.bcm.edu 37 17 79977055 79977055 + 3'UTR SNP G G T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRA6 64220 broad.mit.edu 37 15 74472524 74472524 + Missense_Mutation SNP C A A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STRA6 64220 hgsc.bcm.edu;ucsc.edu 37 15 74483211 74483211 + Silent SNP T T C novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STRA8 346673 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134928142 134928142 + Silent SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRADA 92335 hgsc.bcm.edu 37 17 61781983 61781983 + Intron SNP G G T rs77344145 unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRADB 55437 hgsc.bcm.edu;ucsc.edu 37 2 202340447 202340447 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STRBP 55342 broad.mit.edu 37 9 125887689 125887690 + 3'UTR INS - T T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STRBP 55342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125936121 125936121 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRC 161497 broad.mit.edu 37 15 43902266 43902266 + Intron SNP A T T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STRN3 29966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31376115 31376115 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRN3 29966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31404443 31404443 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRN3 29966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31416465 31416465 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRN4 29888 broad.mit.edu;ucsc.edu 37 19 47228597 47228597 + Silent SNP C G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STRN 6801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37088370 37088370 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRN 6801 hgsc.bcm.edu;ucsc.edu 37 2 37094944 37094944 + Intron SNP A A T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STRN 6801 hgsc.bcm.edu;ucsc.edu 37 2 37126774 37126774 + Silent SNP G G A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STT3A 3703 broad.mit.edu 37 11 125490850 125490850 + 3'UTR SNP C A A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STT3A 3703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 125479362 125479362 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STT3B 201595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 31658488 31658488 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STT3B 201595 hgsc.bcm.edu 37 3 31659455 31659456 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STUB1 10273 broad.mit.edu 37 16 731639 731639 + Intron SNP T C C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX10 8677 broad.mit.edu 37 19 13260325 13260325 + Silent SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX10 8677 hgsc.bcm.edu;ucsc.edu 37 19 13260576 13260576 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STX16 8675 broad.mit.edu;hgsc.bcm.edu 37 20 57251366 57251366 + 3'UTR SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX16 8675 hgsc.bcm.edu;ucsc.edu 37 20 57251251 57251251 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STX18 53407 broad.mit.edu 37 4 4421575 4421576 + 3'UTR INS - G G rs112356119 bycluster;by1000genomes TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX19 415117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 93733283 93733283 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX19 415117 hgsc.bcm.edu;ucsc.edu 37 3 93733337 93733337 + Silent SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX19 415117 hgsc.bcm.edu;ucsc.edu 37 3 93733631 93733631 + Silent SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STX1A 6804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73118169 73118169 + Intron SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX1A 6804 hgsc.bcm.edu;ucsc.edu 37 7 73123410 73123410 + Missense_Mutation SNP C C G novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX1B 112755 broad.mit.edu 37 16 31004014 31004015 + 3'UTR INS - GGGGTGGAGGA GGGGTGGAGGA rs11269803 bycluster;by1000genomes TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX1B 112755 broad.mit.edu 37 16 31004014 31004015 + 3'UTR INS - GGGGTGGAGGA GGGGTGGAGGA rs11269803 bycluster;by1000genomes TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX1B 112755 broad.mit.edu 37 16 31004014 31004015 + 3'UTR INS - GGGGTGGAGGA GGGGTGGAGGA rs11269803 bycluster;by1000genomes TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX1B 112755 broad.mit.edu 37 16 31004014 31004015 + 3'UTR INS - GGGGTGGAGGA GGGGTGGAGGA rs11269803 bycluster;by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX1B 112755 broad.mit.edu 37 16 31004014 31004015 + 3'UTR INS - GGGGTGGAGGA GGGGTGGAGGA rs11269803 bycluster;by1000genomes TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX2 2054 broad.mit.edu 37 12 131276349 131276349 + 3'UTR SNP A T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STX2 2054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 131311785 131311785 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX2 2054 hgsc.bcm.edu;ucsc.edu 37 12 131293164 131293164 + Intron SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX4 6810 hgsc.bcm.edu;ucsc.edu 37 16 31049919 31049919 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX7 8417 broad.mit.edu;hgsc.bcm.edu 37 6 132785212 132785212 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX7 8417 broad.mit.edu;hgsc.bcm.edu 37 6 132785213 132785213 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STX8 9482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 9153958 9153958 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STXBP1 6812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130413898 130413898 + Silent SNP G G T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STXBP2 6813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7703632 7703632 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STXBP2 6813 broad.mit.edu;ucsc.edu 37 19 7712373 7712373 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STXBP2 6813 hgsc.bcm.edu 37 19 7707347 7707347 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STXBP2 6813 hgsc.bcm.edu 37 19 7712143 7712143 + Intron SNP C C G rs139200597 by1000genomes;alternate_allele TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STXBP3 6814 broad.mit.edu 37 1 109289328 109289328 + 5'UTR SNP G A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STXBP3 6814 hgsc.bcm.edu 37 1 109325070 109325070 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STXBP3 6814 hgsc.bcm.edu 37 1 109325070 109325070 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STXBP3 6814 hgsc.bcm.edu 37 1 109338857 109338857 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID STXBP5 134957 broad.mit.edu 37 6 147588238 147588238 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STXBP5 134957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 147685200 147685200 + Silent SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STXBP5L 9515 broad.mit.edu 37 3 121138013 121138013 + 3'UTR SNP T A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx STXBP5L 9515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121097679 121097679 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STXBP5L 9515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121137382 121137382 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq STYK1 55359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10772767 10772767 + Silent SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq STYK1 55359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10783738 10783738 + Silent SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq STYK1 55359 hgsc.bcm.edu;ucsc.edu 37 12 10783683 10783683 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID STYX 6815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53213187 53213187 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUCLA2 8803 broad.mit.edu 37 13 48612044 48612044 + 5'UTR SNP A C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUCLA2 8803 broad.mit.edu;hgsc.bcm.edu 37 13 48517474 48517474 + 3'UTR SNP T T C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUCLG1 8802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84652566 84652566 + Silent SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUCLG1 8802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84660489 84660489 + Silent SNP C C T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUCLG1 8802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84668507 84668507 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUCLG1 8802 broad.mit.edu;ucsc.edu 37 2 84652703 84652703 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUCLG1 8802 hgsc.bcm.edu 37 2 84652567 84652567 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUCLG1 8802 hgsc.bcm.edu 37 2 84686333 84686337 + Frame_Shift_Del DEL GGCCG GGCCG - novel unknown TCGA-BP-4165-01A-02W-1362-10 TCGA-BP-4165-11A-01W-1362-10 GGCCG GGCCG GGCCG - GGCCG GGCCG Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq SUCLG1 8802 hgsc.bcm.edu 37 2 84686342 84686342 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4165-01A-02W-1362-10 TCGA-BP-4165-11A-01W-1362-10 T T T G T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq SUCLG2 8801 broad.mit.edu;hgsc.bcm.edu 37 3 67578587 67578587 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUDS3 64426 broad.mit.edu 37 12 118855284 118855284 + 3'UTR DEL T - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUDS3 64426 hgsc.bcm.edu 37 12 118839609 118839609 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUFU 51684 hgsc.bcm.edu 37 10 104352445 104352445 + Silent SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUFU 51684 hgsc.bcm.edu 37 10 104357037 104357037 + Silent SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUGP1 57794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19427268 19427268 + Missense_Mutation SNP T T G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUGP2 10147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19129981 19129981 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUGP2 10147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19136452 19136452 + Silent SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUGT1 10910 broad.mit.edu;hgsc.bcm.edu 37 13 53231666 53231666 + Splice_Site SNP G G C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUGT1 10910 hgsc.bcm.edu;ucsc.edu 37 13 53239772 53239772 + Silent SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULF1 23213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70512843 70512843 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULF1 23213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70514054 70514054 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULF1 23213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70533276 70533276 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULF1 23213 hgsc.bcm.edu;ucsc.edu 37 8 70515859 70515861 + In_Frame_Del DEL AAT AAT - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 AAT AAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULF2 55959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46365503 46365503 + Missense_Mutation SNP G G T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULF2 55959 hgsc.bcm.edu 37 20 46365452 46365452 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SULT1A1 6817 broad.mit.edu 37 16 28620121 28620121 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SULT1A2 6799 broad.mit.edu;hgsc.bcm.edu 37 16 28607132 28607132 + Silent SNP G G A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULT1B1 27284 hgsc.bcm.edu 37 4 70599939 70599939 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SULT1C2 6819 hgsc.bcm.edu 37 2 108910186 108910186 + Silent SNP G G T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SULT1C2 6819 hgsc.bcm.edu 37 2 108910186 108910186 + Silent SNP G G T novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SULT1C3 442038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 108872055 108872055 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULT1E1 6783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 70707775 70707775 + Silent SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULT2A1 6822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48385434 48385434 + Silent SNP A A G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULT2A1 6822 hgsc.bcm.edu;ucsc.edu 37 19 48385414 48385415 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULT2B1 6820 broad.mit.edu;ucsc.edu 37 19 49096055 49096055 + Silent SNP C G G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SULT4A1 25830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 44237743 44237743 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SULT6B1 391365 hgsc.bcm.edu;ucsc.edu 37 2 37410624 37410624 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUMF2 25870 broad.mit.edu 37 7 56147618 56147618 + 3'UTR SNP T G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUMO1 7341 broad.mit.edu 37 2 203071957 203071957 + Intron SNP A C C novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUMO1P1 391257 broad.mit.edu 37 20 52491953 52491953 + RNA SNP C A A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUMO2 6613 broad.mit.edu 37 17 73164227 73164227 + 3'UTR DEL A - - rs34641551 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUN1 23353 broad.mit.edu;ucsc.edu 37 7 905604 905604 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUN1 23353 broad.mit.edu;ucsc.edu 37 7 912892 912892 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUN1 23353 hgsc.bcm.edu 37 7 882831 882831 + Intron SNP T T G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUN1 23353 hgsc.bcm.edu 37 7 897496 897496 + Missense_Mutation SNP G G A rs59910530 bycluster;byfrequency;by1000genomes TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUN1 23353 hgsc.bcm.edu 37 7 897496 897496 + Missense_Mutation SNP G G A rs59910530 bycluster;byfrequency;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUN2 25777 broad.mit.edu;hgsc.bcm.edu 37 22 39146323 39146323 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUN2 25777 broad.mit.edu 37 22 39132222 39132222 + 3'UTR SNP T G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUN2 25777 broad.mit.edu 37 22 39132222 39132222 + 3'UTR SNP T G G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUN5 140732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31571646 31571646 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUN5 140732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31572986 31572986 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUOX 6821 broad.mit.edu 37 12 56395697 56395699 + Intron DEL TGG - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 TGG TGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUOX 6821 broad.mit.edu 37 12 56395974 56395974 + Intron SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUOX 6821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56396036 56396036 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUOX 6821 broad.mit.edu;ucsc.edu 37 12 56397616 56397616 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUPT3H 8464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44921067 44921067 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT4H1 6827 broad.mit.edu 37 17 56430319 56430319 + 5'Flank DEL G - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUPT4H1 6827 hgsc.bcm.edu 37 17 56429508 56429508 + 5'UTR SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT5H 6829 broad.mit.edu 37 19 39967115 39967115 + 3'UTR SNP G A A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUPT5H 6829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39955501 39955501 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT5H 6829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39964875 39964875 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT5H 6829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39965287 39965287 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT5H 6829 hgsc.bcm.edu 37 19 39959403 39959403 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUPT5H 6829 hgsc.bcm.edu 37 19 39962250 39962250 + Silent SNP A A G novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUPT5H 6829 hgsc.bcm.edu;ucsc.edu 37 19 39936543 39936543 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUPT6H 6830 broad.mit.edu 37 17 27024072 27024072 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUPT6H 6830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27023953 27023953 + Silent SNP T T C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT6H 6830 hgsc.bcm.edu 37 17 27027220 27027225 + In_Frame_Del DEL CGGACA CGGACA - novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 CGGACA CGGACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT6H 6830 hgsc.bcm.edu;ucsc.edu 37 17 27011637 27011637 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SUPT7L 9913 broad.mit.edu;hgsc.bcm.edu 37 2 27876614 27876614 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPT7L 9913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27880496 27880497 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPV3L1 6832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70967647 70967647 + Silent SNP C C A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUPV3L1 6832 broad.mit.edu;ucsc.edu 37 10 70954975 70954975 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUPV3L1 6832 hgsc.bcm.edu;ucsc.edu 37 10 70960220 70960220 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SURF4 6836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136233529 136233529 + Silent SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SURF4 6836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136234216 136234216 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUSD2 56241 broad.mit.edu 37 22 24577515 24577517 + In_Frame_Del DEL CTG - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUSD2 56241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24579610 24579610 + Silent SNP G G T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUSD2 56241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24580140 24580140 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUSD3 203328 broad.mit.edu 37 9 95847078 95847078 + 3'UTR SNP A C C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUSD4 55061 broad.mit.edu 37 1 223395438 223395438 + 3'UTR SNP A C C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUSD4 55061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223408420 223408420 + Silent SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUSD5 26032 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33194429 33194429 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUV39H1 6839 broad.mit.edu 37 X 48566794 48566794 + 3'UTR DEL G - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUV39H1 6839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48557408 48557408 + Silent SNP C C A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUV39H2 79723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14941580 14941580 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUV39H2 79723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14941582 14941582 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUV39H2 79723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14941677 14941677 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUV420H2 84787 broad.mit.edu 37 19 55854541 55854542 + Intron INS - GCCCCTGCCCCT GCCCCTGCCCCT novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SUZ12 23512 broad.mit.edu;hgsc.bcm.edu 37 17 30310113 30310113 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUZ12 23512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30302576 30302576 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUZ12 23512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30321020 30321020 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUZ12 23512 hgsc.bcm.edu 37 17 30310080 30310080 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUZ12 23512 hgsc.bcm.edu 37 17 30310087 30310088 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SUZ12P 0 broad.mit.edu 37 17 29061651 29061651 + Intron SNP G T T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SV2A 9900 hgsc.bcm.edu 37 1 149883492 149883492 + Silent SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SV2C 22987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75427933 75427933 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SV2C 22987 hgsc.bcm.edu 37 5 75469809 75469809 + Intron SNP A A G novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SV2C 22987 hgsc.bcm.edu 37 5 75469812 75469812 + Intron SNP G G T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SV2C 22987 hgsc.bcm.edu;ucsc.edu 37 5 75490777 75490777 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SVEP1 79987 broad.mit.edu 37 9 113238449 113238449 + Intron SNP T G G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113168633 113168633 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113169878 113169878 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113170849 113170849 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113212507 113212507 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113241933 113241933 + Silent SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113265449 113265449 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113276281 113276281 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113312161 113312161 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVEP1 79987 hgsc.bcm.edu 37 9 113168501 113168501 + Missense_Mutation SNP A A G rs41278435 bycluster;by1000genomes TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SVEP1 79987 hgsc.bcm.edu 37 9 113169538 113169538 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SVIL 6840 broad.mit.edu 37 10 29776326 29776327 + Intron DEL AA - - rs72152755 unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SVIL 6840 broad.mit.edu 37 10 29776326 29776327 + Intron DEL AA - - rs72152755 unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SVIL 6840 broad.mit.edu 37 10 29843732 29843732 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SVIL 6840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 29752498 29752498 + Missense_Mutation SNP T T C rs150671744 byfrequency;alternate_allele TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVIL 6840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 29769552 29769552 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVIL 6840 broad.mit.edu;ucsc.edu 37 10 29815982 29815982 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SVIL 6840 hgsc.bcm.edu 37 10 29779789 29779789 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVIL 6840 hgsc.bcm.edu 37 10 29779847 29779847 + Missense_Mutation SNP A A C rs61737900 byfrequency TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SVIL 6840 hgsc.bcm.edu 37 10 29840075 29840075 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SVIL 6840 hgsc.bcm.edu 37 10 29840075 29840075 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SVIL 6840 hgsc.bcm.edu;ucsc.edu 37 10 29762797 29762805 + In_Frame_Del DEL CGTCATCAG CGTCATCAG - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 CGTCATCAG CGTCATCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SVOPL 136306 broad.mit.edu;hgsc.bcm.edu 37 7 138333763 138333763 + Silent SNP G G T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYBU 55638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110587762 110587762 + Silent SNP G G A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYBU 55638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110598354 110598354 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYBU 55638 hgsc.bcm.edu;ucsc.edu 37 8 110588188 110588188 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYBU 55638 hgsc.bcm.edu;ucsc.edu 37 8 110590177 110590177 + Silent SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYCE1L 100130958 hgsc.bcm.edu 37 16 77243354 77243354 + Silent SNP A A G rs112786494 unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYCE2 256126 hgsc.bcm.edu 37 19 13011345 13011345 + Silent SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYCN 342898 broad.mit.edu;hgsc.bcm.edu 37 19 39694580 39694580 + Silent SNP G G T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYCP1 6847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115489894 115489894 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYCP2 10388 broad.mit.edu;hgsc.bcm.edu 37 20 58439344 58439344 + 3'UTR SNP G G T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYCP2 10388 hgsc.bcm.edu 37 20 58456567 58456567 + Intron SNP A A T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYCP2 10388 hgsc.bcm.edu;ucsc.edu 37 20 58455486 58455486 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYCP2 10388 hgsc.bcm.edu;ucsc.edu 37 20 58456095 58456095 + Intron SNP T T C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYCP2L 221711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10907856 10907856 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYCP2L 221711 broad.mit.edu;ucsc.edu 37 6 10898272 10898272 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYCP2L 221711 broad.mit.edu;ucsc.edu 37 6 10911079 10911079 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYCP2L 221711 hgsc.bcm.edu;ucsc.edu 37 6 10955449 10955449 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYCP3 50511 hgsc.bcm.edu;ucsc.edu 37 12 102125403 102125403 + Silent SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYDE1 85360 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15223181 15223181 + Missense_Mutation SNP C C A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYDE1 85360 hgsc.bcm.edu;ucsc.edu 37 19 15224541 15224561 + In_Frame_Del DEL GGGCGGGACTTCCTGCCCTGT GGGCGGGACTTCCTGCCCTGT - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 GGGCGGGACTTCCTGCCCTGT GGGCGGGACTTCCTGCCCTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYDE2 84144 broad.mit.edu 37 1 85624346 85624346 + 3'UTR SNP A C C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYDE2 84144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85630328 85630328 + Missense_Mutation SNP T T C novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYDE2 84144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85648743 85648743 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYF2 25949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 25549846 25549846 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYK 6850 broad.mit.edu 37 9 93657907 93657907 + 3'UTR SNP G C C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYK 6850 broad.mit.edu 37 9 93658485 93658486 + 3'UTR INS - A A rs113920845 unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYK 6850 broad.mit.edu;ucsc.edu 37 9 93606288 93606288 + Silent SNP T C C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYK 6850 broad.mit.edu;ucsc.edu 37 9 93624627 93624627 + Splice_Site SNP G A A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYK 6850 broad.mit.edu;ucsc.edu 37 9 93636536 93636536 + Silent SNP G A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYMPK 8189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46319803 46319803 + Silent SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYN3 8224 hgsc.bcm.edu;ucsc.edu 37 22 32934079 32934079 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNC 81493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33149611 33149611 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNCRIP 10492 broad.mit.edu;hgsc.bcm.edu 37 6 86324828 86324828 + Silent SNP A A G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 broad.mit.edu 37 6 152688149 152688149 + Intron SNP T G G novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNE1 23345 broad.mit.edu 37 6 152688194 152688194 + Intron SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNE1 23345 broad.mit.edu 37 6 152783703 152783703 + Intron SNP T G G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNE1 23345 broad.mit.edu;hgsc.bcm.edu 37 6 152599304 152599304 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152443659 152443659 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152473119 152473120 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152488950 152488950 + Intron SNP C C A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152565703 152565703 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152647465 152647465 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152665354 152665354 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152711518 152711518 + Missense_Mutation SNP A A T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152757208 152757208 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152809562 152809562 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq SYNE1 23345 hgsc.bcm.edu 37 6 152461141 152461141 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE1 23345 hgsc.bcm.edu 37 6 152461141 152461141 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152470618 152470618 + Silent SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152621860 152621860 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152639292 152639292 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152716701 152716701 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152776696 152776696 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152779924 152779924 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64408465 64408465 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64447732 64447732 + Silent SNP G G A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64457262 64457262 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64532268 64532268 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64532269 64532269 + Silent SNP G G C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64545255 64545255 + Silent SNP G G C novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64568741 64568741 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64683102 64683102 + Silent SNP C C G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNE2 23224 hgsc.bcm.edu 37 14 64450489 64450489 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE2 23224 hgsc.bcm.edu 37 14 64554560 64554560 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE2 23224 hgsc.bcm.edu;ucsc.edu 37 14 64493398 64493399 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE2 23224 hgsc.bcm.edu;ucsc.edu 37 14 64496675 64496675 + Silent SNP A A G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE2 23224 hgsc.bcm.edu;ucsc.edu 37 14 64516356 64516356 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNE2 23224 hgsc.bcm.edu;ucsc.edu 37 14 64556348 64556348 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNGAP1 8831 broad.mit.edu 37 6 33387939 33387941 + 5'UTR DEL CTC - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNGAP1 8831 broad.mit.edu 37 6 33411625 33411625 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNGAP1 8831 broad.mit.edu;hgsc.bcm.edu 37 6 33408548 33408548 + Silent SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNGAP1 8831 hgsc.bcm.edu 37 6 33411251 33411251 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNGAP1 8831 hgsc.bcm.edu;ucsc.edu 37 6 33408632 33408632 + Silent SNP G G A rs77934848 byfrequency;by1000genomes TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNGR1 9145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39777742 39777742 + Silent SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNGR3 9143 broad.mit.edu 37 16 2043317 2043317 + 3'UTR SNP G A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNJ1 8867 broad.mit.edu;hgsc.bcm.edu 37 21 34053921 34053921 + Missense_Mutation SNP T T G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ1 8867 broad.mit.edu;hgsc.bcm.edu 37 21 34066598 34066598 + Silent SNP A A T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ1 8867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34042650 34042650 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ1 8867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34099147 34099147 + Silent SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ1 8867 broad.mit.edu;ucsc.edu 37 21 34011316 34011316 + Nonsense_Mutation SNP G A A novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNJ1 8867 hgsc.bcm.edu;ucsc.edu 37 21 34015702 34015702 + Intron SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ1 8867 hgsc.bcm.edu;ucsc.edu 37 21 34053894 34053894 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158464376 158464376 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158495714 158495714 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158497795 158497795 + Silent SNP A A G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158517224 158517224 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNJ2 8871 hgsc.bcm.edu 37 6 158499241 158499241 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNJ2 8871 hgsc.bcm.edu 37 6 158499241 158499241 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNJ2BP 55333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70839819 70839819 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNM 23336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99672128 99672128 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNM 23336 broad.mit.edu;ucsc.edu 37 15 99670374 99670374 + Silent SNP T C C novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNPO 11346 hgsc.bcm.edu 37 5 150028961 150028962 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNPO 11346 hgsc.bcm.edu 37 5 150028961 150028962 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNPO2 171024 broad.mit.edu 37 4 119981420 119981420 + 3'UTR DEL A - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNPO2 171024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 119947951 119947951 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNPO2 171024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 119947953 119947953 + Silent SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNPO2 171024 hgsc.bcm.edu 37 4 119947962 119947964 + In_Frame_Del DEL AAG AAG - rs111228039 unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNPO2 171024 hgsc.bcm.edu 37 4 119948178 119948178 + Silent SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNPO2 171024 hgsc.bcm.edu;ucsc.edu 37 4 119978853 119978853 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYNRG 11276 broad.mit.edu;hgsc.bcm.edu 37 17 35936539 35936539 + Intron SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNRG 11276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35946642 35946642 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNRG 11276 hgsc.bcm.edu 37 17 35914100 35914101 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNRG 11276 hgsc.bcm.edu;ucsc.edu 37 17 35880695 35880695 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYNRG 11276 broad.mit.edu 37 17 35902054 35902054 + Intron SNP C T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYNRG 11276 hgsc.bcm.edu;ucsc.edu 37 17 35937592 35937592 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYP 6855 hgsc.bcm.edu 37 X 49049790 49049790 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYPL1 6856 hgsc.bcm.edu;ucsc.edu 37 7 105739686 105739686 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYPL2 284612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110020593 110020593 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT10 341359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 33579108 33579108 + Silent SNP C C T rs111713819 unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT10 341359 hgsc.bcm.edu 37 12 33579216 33579217 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT11 23208 broad.mit.edu 37 1 155829511 155829511 + 5'UTR SNP C T T rs3820594 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYT11 23208 hgsc.bcm.edu;ucsc.edu 37 1 155829566 155829566 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT12 91683 broad.mit.edu 37 11 66816272 66816272 + 3'UTR SNP G T T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYT12 91683 broad.mit.edu;hgsc.bcm.edu 37 11 66813240 66813240 + Silent SNP G G T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT12 91683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66807536 66807536 + Silent SNP G G A novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT12 91683 hgsc.bcm.edu 37 11 66816101 66816101 + Missense_Mutation SNP G G A rs141165304 byfrequency TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT12 91683 hgsc.bcm.edu;ucsc.edu 37 11 66811136 66811136 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT15 83849 broad.mit.edu 37 10 46958639 46958640 + 3'UTR DEL GC - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYT15 83849 broad.mit.edu 37 10 46961958 46961958 + 3'UTR SNP C G G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYT15 83849 broad.mit.edu;hgsc.bcm.edu 37 10 46961906 46961906 + 3'UTR SNP G G T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT15 83849 broad.mit.edu;hgsc.bcm.edu 37 10 46962003 46962003 + Silent SNP G G C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT15 83849 broad.mit.edu;hgsc.bcm.edu 37 10 46968685 46968685 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT15 83849 broad.mit.edu;hgsc.bcm.edu 37 10 46968694 46968694 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT15 83849 hgsc.bcm.edu 37 10 46968665 46968665 + Silent SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT15 83849 hgsc.bcm.edu 37 10 46968675 46968679 + Frame_Shift_Del DEL ATCTC ATCTC - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 ATCTC ATCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT15 83849 hgsc.bcm.edu 37 10 46969312 46969312 + Missense_Mutation SNP G G A rs55894256 bycluster TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT15 83849 hgsc.bcm.edu;ucsc.edu 37 10 46967610 46967611 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT16 83851 hgsc.bcm.edu;ucsc.edu 37 14 62462755 62462755 + Silent SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT1 6857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 79747321 79747321 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT1 6857 hgsc.bcm.edu 37 12 79276156 79276156 + Intron SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT1 6857 hgsc.bcm.edu 37 12 79813095 79813095 + Intron SNP T T A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT1 6857 hgsc.bcm.edu;ucsc.edu 37 12 79285603 79285603 + Intron SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT17 51760 hgsc.bcm.edu 37 16 19195087 19195087 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT17 51760 hgsc.bcm.edu;ucsc.edu 37 16 19195340 19195340 + Silent SNP G G A rs75241864 bycluster;byfrequency;by1000genomes TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT2 127833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202566077 202566077 + Silent SNP C C T novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT3 84258 broad.mit.edu;hgsc.bcm.edu 37 19 51135742 51135742 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT3 84258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51140596 51140596 + Silent SNP G G T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT4 6860 broad.mit.edu 37 18 40853880 40853880 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYT4 6860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 40857247 40857247 + 5'UTR SNP T T A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT5 6861 broad.mit.edu 37 19 55686593 55686593 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYT5 6861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55686305 55686305 + Silent SNP G G A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT5 6861 hgsc.bcm.edu 37 19 55690359 55690359 + Silent SNP G G A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT6 148281 hgsc.bcm.edu 37 1 114640500 114640500 + Splice_Site SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYT7 9066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61295625 61295625 + Silent SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYT7 9066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61323583 61323583 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL2 54843 broad.mit.edu 37 11 85406135 85406135 + 3'UTR SNP G A A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYTL2 54843 broad.mit.edu 37 11 85428687 85428687 + Intron SNP C T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYTL2 54843 broad.mit.edu;hgsc.bcm.edu 37 11 85428602 85428602 + Intron SNP A A G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL2 54843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 85409119 85409119 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL2 54843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 85416035 85416035 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL2 54843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 85431940 85431940 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL2 54843 hgsc.bcm.edu;ucsc.edu 37 11 85435949 85435949 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYTL2 54843 hgsc.bcm.edu;ucsc.edu 37 11 85438961 85438961 + Silent SNP G G T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYTL3 94120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 159184435 159184435 + Silent SNP C C A rs140709967 byfrequency;alternate_allele TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL3 94120 hgsc.bcm.edu 37 6 159166676 159166676 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID SYTL3 94120 hgsc.bcm.edu;ucsc.edu 37 6 159182976 159182976 + Intron SNP T T C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL4 94121 broad.mit.edu 37 X 99930742 99930742 + 3'UTR DEL A - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYTL4 94121 broad.mit.edu 37 X 99930891 99930892 + 3'UTR DEL AT - - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYTL4 94121 broad.mit.edu 37 X 99930891 99930892 + 3'UTR DEL AT - - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYTL4 94121 broad.mit.edu 37 X 99941139 99941139 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYTL5 94122 broad.mit.edu;hgsc.bcm.edu 37 X 37935825 37935825 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYTL5 94122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 37984722 37984722 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq SYVN1 84447 broad.mit.edu 37 11 64897312 64897312 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx SYVN1 84447 hgsc.bcm.edu 37 11 64897535 64897536 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAAR2 9287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132938953 132938953 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAAR5 9038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132910004 132910004 + Silent SNP G G T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAAR5 9038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132910010 132910010 + Silent SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAAR6 319100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132892288 132892288 + Silent SNP T T A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAAR9 134860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132859640 132859640 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAB1 10454 broad.mit.edu 37 22 39771852 39771854 + 5'UTR DEL GCT - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 GCT GCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAB1 10454 hgsc.bcm.edu 37 22 39826038 39826038 + Silent SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAB2 23118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 149691195 149691195 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAB2 23118 hgsc.bcm.edu;ucsc.edu 37 6 149699871 149699872 + Frame_Shift_Ins INS - - T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAB2(dist=9381) 0 hgsc.bcm.edu 37 6 149742128 149742128 + IGR SNP G G A novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAB3 257397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30849594 30849594 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAC1 6863 hgsc.bcm.edu;ucsc.edu 37 7 97364197 97364197 + Intron SNP A A C novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAC3 6866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57409489 57409489 + Silent SNP A A T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACC1 6867 broad.mit.edu 37 8 38684968 38684968 + Intron SNP G A A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TACC1 6867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38677391 38677391 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACC1 6867 hgsc.bcm.edu;ucsc.edu 37 8 38684806 38684806 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TACC1 6867 hgsc.bcm.edu;ucsc.edu 37 8 38704295 38704295 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TACC2 10579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123810032 123810032 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID TACC2 10579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123845033 123845033 + Silent SNP G G A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TACC2 10579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123846868 123846868 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACC2 10579 hgsc.bcm.edu;ucsc.edu 37 10 123844479 123844479 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACC3 10460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1746754 1746754 + 3'UTR SNP G G T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACC3 10460 hgsc.bcm.edu 37 4 1729795 1729795 + Silent SNP A A G novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACC3 10460 hgsc.bcm.edu 37 4 1738986 1738986 + Silent SNP G G A novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TACR1 6869 broad.mit.edu 37 2 75426105 75426105 + 5'UTR SNP C T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TACR1 6869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 75278449 75278449 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACR1 6869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 75278450 75278450 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACR2 6865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71166878 71166878 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACR2 6865 hgsc.bcm.edu 37 10 71164734 71164734 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TACR2 6865 hgsc.bcm.edu;ucsc.edu 37 10 71166860 71166860 + Silent SNP G G T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TACR3 6870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104510994 104510994 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TACR3 6870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104512654 104512654 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TADA1 117143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166833059 166833059 + Splice_Site SNP A A T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TADA1 117143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166845479 166845479 + 5'UTR SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TADA1 117143 hgsc.bcm.edu;ucsc.edu 37 1 166826919 166826919 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TADA1 117143 hgsc.bcm.edu;ucsc.edu 37 1 166839078 166839078 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TADA2A 6871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35804809 35804809 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TADA2A 6871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35836946 35836946 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TADA3 10474 broad.mit.edu 37 3 9825848 9825848 + Missense_Mutation SNP C A A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TADA3 10474 broad.mit.edu 37 3 9829229 9829230 + Intron DEL AC - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF11 6882 broad.mit.edu 37 6 34846156 34846156 + 3'UTR SNP C A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF13 6884 hgsc.bcm.edu 37 1 109617620 109617620 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF15 8148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34147197 34147197 + Silent SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF15 8148 hgsc.bcm.edu 37 17 34171576 34171605 + In_Frame_Del DEL GGTGGCTATGGTGGAGACAGAAGCAGCGGT GGTGGCTATGGTGGAGACAGAAGCAGCGGT - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 GGTGGCTATGGTGGAGACAGAAGCAGCGGT GGTGGCTATGGTGGAGACAGAAGCAGCGGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF15 8148 hgsc.bcm.edu 37 17 34171624 34171650 + In_Frame_Del DEL AGAAGTGGGGGCGGCTATGGTGGAGAC AGAAGTGGGGGCGGCTATGGTGGAGAC - novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 AGAAGTGGGGGCGGCTATGGTGGAGAC AGAAGTGGGGGCGGCTATGGTGGAGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF15 8148 hgsc.bcm.edu 37 17 34171703 34171726 + In_Frame_Del DEL GAGGAGGCGGCTATGGAGGAGACC GAGGAGGCGGCTATGGAGGAGACC - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 GAGGAGGCGGCTATGGAGGAGACC GAGGAGGCGGCTATGGAGGAGACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF15 8148 hgsc.bcm.edu 37 17 34171885 34171885 + Silent SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF15 8148 hgsc.bcm.edu;ucsc.edu 37 17 34171159 34171159 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF1 6872 broad.mit.edu 37 X 70607246 70607246 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF1 6872 broad.mit.edu;hgsc.bcm.edu 37 X 70602417 70602417 + Silent SNP T T C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1 6872 broad.mit.edu;hgsc.bcm.edu 37 X 70603945 70603945 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1 6872 broad.mit.edu;hgsc.bcm.edu 37 X 70613248 70613248 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TAF1 6872 broad.mit.edu;hgsc.bcm.edu 37 X 70643015 70643015 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1 6872 hgsc.bcm.edu;ucsc.edu 37 X 70678095 70678095 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID TAF1A 9015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222743918 222743918 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1A 9015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222750908 222750908 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1A 9015 hgsc.bcm.edu;ucsc.edu 37 1 222736578 222736578 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF1B 9014 broad.mit.edu 37 2 9983579 9983594 + 5'UTR DEL TTTCCGGCCGGAAGCT - - novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 TTTCCGGCCGGAAGCT TTTCCGGCCGGAAGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF1B 9014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10051037 10051037 + Silent SNP C C T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1B 9014 hgsc.bcm.edu 37 2 9989571 9989571 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1C 9013 broad.mit.edu 37 16 84212370 84212370 + 3'UTR SNP A G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF1C 9013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84215586 84215586 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1C 9013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84215642 84215642 + Silent SNP G G T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1C 9013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84216939 84216939 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1C 9013 hgsc.bcm.edu 37 16 84213194 84213194 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF1C 9013 hgsc.bcm.edu;ucsc.edu 37 16 84216708 84216708 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF1D 79101 hgsc.bcm.edu 37 11 93470348 93470348 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF1L 138474 broad.mit.edu;hgsc.bcm.edu 37 9 32630069 32630069 + 3'UTR SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1L 138474 broad.mit.edu;hgsc.bcm.edu 37 9 32633474 32633474 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TAF1L 138474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32630843 32630843 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1L 138474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32630844 32630844 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF1L 138474 hgsc.bcm.edu;ucsc.edu 37 9 32634567 32634567 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID TAF2 6873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 120814248 120814248 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF2 6873 hgsc.bcm.edu;ucsc.edu 37 8 120744220 120744221 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF3 83860 broad.mit.edu 37 10 8051125 8051125 + Silent SNP G T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF3 83860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 8006092 8006092 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF3 83860 hgsc.bcm.edu 37 10 8055709 8055709 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF4 6874 hgsc.bcm.edu 37 20 60551323 60551323 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF4 6874 hgsc.bcm.edu;ucsc.edu 37 20 60574076 60574077 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF4B 6875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 23872291 23872291 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF4B 6875 hgsc.bcm.edu;ucsc.edu 37 18 23969945 23969945 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF5 6877 broad.mit.edu;hgsc.bcm.edu 37 10 105139365 105139365 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF5 6877 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105133273 105133273 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF5L 27097 broad.mit.edu;hgsc.bcm.edu 37 1 229738474 229738474 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF5L 27097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229730773 229730773 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF5L 27097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229738593 229738593 + Silent SNP C C A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF6 6878 broad.mit.edu 37 7 99704862 99704862 + 3'UTR SNP T G G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF6 6878 hgsc.bcm.edu 37 7 99705041 99705041 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF7 6879 broad.mit.edu 37 5 140699694 140699694 + 5'UTR SNP G C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF7L 54457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100524198 100524198 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF7L 54457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100532702 100532702 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF7L 54457 hgsc.bcm.edu 37 X 100531461 100531461 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAF7L 54457 hgsc.bcm.edu;ucsc.edu 37 X 100547952 100547952 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF8 129685 broad.mit.edu 37 6 42025358 42025358 + Intron SNP G T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF8 129685 broad.mit.edu 37 6 42046086 42046087 + 3'UTR DEL TG - - rs146859462 bycluster;by1000genomes TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF8 129685 hgsc.bcm.edu;ucsc.edu 37 6 42044898 42044898 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF9 6880 broad.mit.edu 37 5 68662593 68662593 + 5'UTR DEL T - - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF9B 51616 broad.mit.edu 37 X 77387029 77387029 + 3'UTR SNP T C C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAF9B 51616 hgsc.bcm.edu 37 X 77395123 77395123 + 5'UTR SNP C C A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAF9B 51616 hgsc.bcm.edu 37 X 77395123 77395123 + 5'UTR SNP C C A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAGAP 117289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 159457430 159457430 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAGLN2 8407 broad.mit.edu 37 1 159888948 159888948 + Intron SNP T A A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAGLN 6876 broad.mit.edu 37 11 117075223 117075223 + 3'UTR DEL G - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TALDO1 6888 broad.mit.edu 37 11 747520 747520 + Silent SNP C T T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TALDO1 6888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 763505 763505 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TALDO1 6888 hgsc.bcm.edu 37 11 755932 755932 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TANC1 85461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160035470 160035470 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TANC1 85461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160042345 160042345 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TANC1 85461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160080760 160080760 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TANC1 85461 hgsc.bcm.edu;ucsc.edu 37 2 159992709 159992709 + Silent SNP C C G novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TANC2 26115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61498351 61498351 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TANC2 26115 hgsc.bcm.edu 37 17 61473212 61473212 + Nonsense_Mutation SNP C C T rs113065000 by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TANK 10010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162091890 162091890 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAOK2 9344 hgsc.bcm.edu 37 16 30002435 30002436 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAOK2 9344 hgsc.bcm.edu 37 16 30002435 30002436 + Frame_Shift_Ins INS - - G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAOK2 9344 hgsc.bcm.edu;ucsc.edu 37 16 29989603 29989603 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAOK3 51347 hgsc.bcm.edu 37 12 118588785 118588785 + 3'UTR SNP T T G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAP2 6891 broad.mit.edu;hgsc.bcm.edu 37 6 32805899 32805899 + Silent SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAPBP 6892 broad.mit.edu;hgsc.bcm.edu 37 6 33272444 33272444 + Intron SNP G G C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAPBPL 55080 hgsc.bcm.edu;ucsc.edu 37 12 6567862 6567862 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAPT1 202018 broad.mit.edu;hgsc.bcm.edu 37 4 16165153 16165153 + Silent SNP G G T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARBP1 6894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234536934 234536934 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARBP1 6894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234541769 234541769 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARBP1 6894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234565028 234565028 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARBP1 6894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234582578 234582578 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARBP1 6894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234599596 234599596 + Silent SNP T T C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARBP1 6894 hgsc.bcm.edu 37 1 234553902 234553902 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TARBP1 6894 hgsc.bcm.edu;ucsc.edu 37 1 234563467 234563467 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TARBP2 6895 broad.mit.edu;hgsc.bcm.edu 37 12 53899955 53899955 + 3'UTR SNP G G A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARM1 441864 hgsc.bcm.edu 37 19 54573304 54573304 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARP 445347 broad.mit.edu 37 7 38343711 38343712 + Intron INS - T T rs11442948 bycluster;by1000genomes TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TARP(dist=80563) 0 hgsc.bcm.edu 37 7 38393811 38393811 + IGR SNP A A G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARS2 80222 broad.mit.edu;hgsc.bcm.edu 37 1 150476838 150476838 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARS2 80222 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150459930 150459930 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARS2 80222 hgsc.bcm.edu;ucsc.edu 37 1 150460370 150460370 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TARS 6897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33467768 33467768 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TARS 6897 hgsc.bcm.edu;ucsc.edu 37 5 33458717 33458717 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TARSL2 123283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 102261432 102261432 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS1R1 80835 hgsc.bcm.edu 37 1 6638984 6638985 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS1R2 80834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19167003 19167003 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS1R2 80834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19180859 19180859 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS1R2 80834 hgsc.bcm.edu 37 1 19168259 19168259 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS1R2 80834 hgsc.bcm.edu 37 1 19181061 19181061 + Silent SNP G G A novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS1R2 80834 hgsc.bcm.edu;ucsc.edu 37 1 19166613 19166613 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS1R3 83756 broad.mit.edu;hgsc.bcm.edu 37 1 1267928 1267928 + Silent SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS1R3 83756 broad.mit.edu;hgsc.bcm.edu 37 1 1268364 1268364 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS1R3 83756 broad.mit.edu;hgsc.bcm.edu 37 1 1268924 1268924 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R13 50838 broad.mit.edu 37 12 11060895 11060895 + 3'UTR SNP A T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAS2R13 50838 hgsc.bcm.edu;ucsc.edu 37 12 11061401 11061401 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R1 50834 broad.mit.edu 37 5 9629200 9629200 + 3'UTR SNP T G G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAS2R1 50834 hgsc.bcm.edu 37 5 9629483 9629483 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R1 50834 hgsc.bcm.edu;ucsc.edu 37 5 9629743 9629743 + Silent SNP C C G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R16 50833 hgsc.bcm.edu;ucsc.edu 37 7 122634964 122634964 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R31 259290 broad.mit.edu;hgsc.bcm.edu 37 12 11183307 11183307 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R3 50831 hgsc.bcm.edu 37 7 141464682 141464682 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R3 50831 hgsc.bcm.edu;ucsc.edu 37 7 141464727 141464727 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R38 5726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 141672669 141672669 + Missense_Mutation SNP C C T rs139085046 byfrequency TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R38 5726 hgsc.bcm.edu 37 7 141672558 141672558 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R38 5726 hgsc.bcm.edu 37 7 141672558 141672558 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAS2R39 259285 hgsc.bcm.edu;ucsc.edu 37 7 142881197 142881197 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R42 353164 broad.mit.edu;hgsc.bcm.edu 37 12 11339532 11339532 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R43 259289 hgsc.bcm.edu 37 12 11244067 11244068 + Frame_Shift_Ins INS - - TT novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R43 259289 hgsc.bcm.edu 37 12 11244071 11244072 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R46 259292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11214646 11214646 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R50 259296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11138584 11138584 + Silent SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R50 259296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11139225 11139225 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAS2R60 338398 broad.mit.edu;ucsc.edu 37 7 143140757 143140757 + Nonsense_Mutation SNP C G G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAS2R8 50836 broad.mit.edu 37 12 10959049 10959049 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TAS2R9 50835 hgsc.bcm.edu;ucsc.edu 37 12 10962229 10962229 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TAT 6898 broad.mit.edu;hgsc.bcm.edu 37 16 71609948 71609948 + Intron SNP C C A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TATDN1 83940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125500921 125500921 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TATDN1 83940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125535229 125535229 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TATDN1 83940 hgsc.bcm.edu 37 8 125516567 125516567 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TATDN1 83940 hgsc.bcm.edu;ucsc.edu 37 8 125527986 125527986 + Splice_Site SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TATDN3 128387 hgsc.bcm.edu;ucsc.edu 37 1 212981154 212981154 + Frame_Shift_Del DEL C C - novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAX1BP1 8887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 27868314 27868314 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAX1BP1 8887 hgsc.bcm.edu 37 7 27856058 27856059 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAX1BP1 8887 hgsc.bcm.edu;ucsc.edu 37 7 27788296 27788296 + Silent SNP T T G novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAZ 6901 broad.mit.edu;hgsc.bcm.edu 37 X 153649048 153649048 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TAZ 6901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153649068 153649068 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D10B 26000 broad.mit.edu 37 16 30380671 30380671 + Silent SNP C T T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D10B 26000 hgsc.bcm.edu 37 16 30370551 30370551 + Silent SNP G G A rs113035492 bycluster TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D12 23232 broad.mit.edu 37 10 96290995 96290995 + Silent SNP T C C novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D12 23232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96291127 96291127 + Silent SNP A A G novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D12 23232 hgsc.bcm.edu 37 10 96281773 96281773 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D12 23232 hgsc.bcm.edu 37 10 96281773 96281773 + Missense_Mutation SNP T T A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D12 23232 hgsc.bcm.edu;ucsc.edu 37 10 96291048 96291048 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D1 23216 broad.mit.edu;ucsc.edu 37 4 38023333 38023333 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D1 23216 hgsc.bcm.edu 37 4 38016542 38016542 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D1 23216 hgsc.bcm.edu 37 4 38016542 38016542 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D1 23216 hgsc.bcm.edu;ucsc.edu 37 4 38029477 38029477 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D13 54662 hgsc.bcm.edu 37 9 131550634 131550634 + Silent SNP C C T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D13 54662 hgsc.bcm.edu 37 9 131553914 131553914 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D13 54662 hgsc.bcm.edu 37 9 131570110 131570110 + Silent SNP T T C novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D13 54662 hgsc.bcm.edu;ucsc.edu 37 9 131550656 131550656 + Frame_Shift_Del DEL T T - novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D14 57533 hgsc.bcm.edu 37 4 7012491 7012491 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D15 64786 broad.mit.edu 37 12 72242944 72242944 + Intron DEL A - - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D15 64786 broad.mit.edu 37 12 72317051 72317051 + 3'UTR DEL A - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D15 64786 broad.mit.edu;hgsc.bcm.edu 37 12 72274276 72274276 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D15 64786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 72278663 72278663 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D15 64786 hgsc.bcm.edu;ucsc.edu 37 12 72288161 72288161 + Splice_Region SNP C C A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D16 125058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 77926601 77926601 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D19 55296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 26741524 26741524 + Silent SNP T T C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D19 55296 hgsc.bcm.edu;ucsc.edu 37 4 26640457 26640457 + Splice_Site SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D19 55296 hgsc.bcm.edu;ucsc.edu 37 4 26755448 26755448 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D20 128637 broad.mit.edu 37 20 422395 422395 + Intron SNP G A A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D20 128637 broad.mit.edu;hgsc.bcm.edu 37 20 422492 422492 + Intron SNP T T C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D21 161514 hgsc.bcm.edu;ucsc.edu 37 15 74174089 74174089 + Splice_Site SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D22B 55633 broad.mit.edu 37 6 37273889 37273889 + Intron DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D22B 55633 hgsc.bcm.edu 37 6 37250060 37250060 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D24 57465 broad.mit.edu;hgsc.bcm.edu 37 16 2546380 2546380 + Silent SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D24 57465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2546654 2546654 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D24 57465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2549923 2549923 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D25 4943 broad.mit.edu;hgsc.bcm.edu 37 X 48403330 48403330 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D25 4943 hgsc.bcm.edu 37 X 48418768 48418768 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D2 55357 broad.mit.edu 37 9 100975615 100975615 + Intron DEL T - - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D2 55357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100963824 100963824 + Silent SNP C C T rs145936813 byfrequency TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D2 55357 hgsc.bcm.edu;ucsc.edu 37 9 100991264 100991264 + Silent SNP C C T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D26 353149 broad.mit.edu 37 17 15643627 15643627 + Intron SNP C T T novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D29 26083 broad.mit.edu;hgsc.bcm.edu 37 17 28887640 28887640 + Silent SNP T T C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D29 26083 hgsc.bcm.edu 37 17 28890361 28890361 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3 729873 broad.mit.edu 37 17 36364836 36364837 + Intron INS - TG TG novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D3 729873 hgsc.bcm.edu 37 17 36294433 36294434 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3 729873 hgsc.bcm.edu 37 17 36294433 36294434 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3C 414060 hgsc.bcm.edu 37 17 34581565 34581566 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3F 84218 hgsc.bcm.edu 37 17 36288688 36288688 + Missense_Mutation SNP G G A rs483718 bycluster TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D3F 84218 hgsc.bcm.edu 37 17 36338191 36338192 + Frame_Shift_Ins INS - - G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3F 84218 hgsc.bcm.edu 37 17 36338191 36338192 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3H 729877 hgsc.bcm.edu 37 17 34746599 34746600 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3H 729877 hgsc.bcm.edu 37 17 34746599 34746600 + Frame_Shift_Ins INS - - G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D3P2 440452 broad.mit.edu 37 17 60342186 60342186 + RNA SNP T C C rs79096325 byfrequency TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D3P2 440452 broad.mit.edu 37 17 60342432 60342432 + RNA SNP T C C rs62069085 byfrequency TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D3P2 440452 broad.mit.edu 37 17 60347011 60347011 + Silent SNP A G G novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D3P2 440452 broad.mit.edu 37 17 60347013 60347013 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D4 9882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 75936707 75936707 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D4 9882 hgsc.bcm.edu;ucsc.edu 37 13 75915626 75915626 + Splice_Region SNP T T C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D4 9882 hgsc.bcm.edu;ucsc.edu 37 13 75936579 75936579 + Silent SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D5 9779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 17279709 17279709 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D8 11138 broad.mit.edu 37 2 101624051 101624052 + 3'UTR INS - GTAA GTAA novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D8 11138 broad.mit.edu 37 2 101624051 101624052 + 3'UTR INS - GTAA GTAA novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBC1D8 11138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 101624288 101624288 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D8B 54885 broad.mit.edu;hgsc.bcm.edu 37 X 106092530 106092530 + Silent SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D8B 54885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106093257 106093257 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D8B 54885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106109183 106109183 + Nonsense_Mutation SNP C C G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D8B 54885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106117008 106117008 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D8B 54885 hgsc.bcm.edu;ucsc.edu 37 X 106116882 106116882 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBC1D9 23158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 141600356 141600356 + Silent SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D9B 23061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179301968 179301968 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBC1D9B 23061 hgsc.bcm.edu;ucsc.edu 37 5 179299981 179299981 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBCB 1155 broad.mit.edu 37 19 36606379 36606380 + 5'UTR INS - CAG CAG novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBCB 1155 broad.mit.edu 37 19 36606379 36606380 + 5'UTR INS - CAG CAG novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBCB 1155 hgsc.bcm.edu;ucsc.edu 37 19 36611673 36611673 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBCC 6903 broad.mit.edu;hgsc.bcm.edu 37 6 42712716 42712716 + 3'UTR SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBCC 6903 broad.mit.edu;hgsc.bcm.edu 37 6 42713803 42713803 + Silent SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBCCD1 55171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186276258 186276258 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBCD 6904 broad.mit.edu 37 17 80863900 80863900 + Silent SNP C A A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBCD 6904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80765530 80765530 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBCD 6904 hgsc.bcm.edu;ucsc.edu 37 17 80887147 80887147 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBCK 93627 broad.mit.edu;hgsc.bcm.edu 37 4 107157650 107157650 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBCK 93627 hgsc.bcm.edu 37 4 107168369 107168370 + Frame_Shift_Ins INS - - G novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBK1 29110 broad.mit.edu 37 12 64895831 64895832 + 3'UTR DEL TA - - rs138029451 bycluster;by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBKBP1 9755 broad.mit.edu;hgsc.bcm.edu 37 17 45773464 45773464 + 5'UTR SNP G G C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBL1X 6907 broad.mit.edu 37 X 9621602 9621602 + 5'UTR SNP C T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBL1X 6907 broad.mit.edu 37 X 9684325 9684325 + 3'UTR SNP A C C novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBL1X 6907 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 9677737 9677737 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBL1X 6907 hgsc.bcm.edu;ucsc.edu 37 X 9660211 9660211 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBL1XR1 79718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 176767807 176767807 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBL1XR1 79718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 176768295 176768295 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBL1XR1 79718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 176769354 176769354 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBL2 26608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72985071 72985071 + Silent SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBL2 26608 hgsc.bcm.edu;ucsc.edu 37 7 72988762 72988762 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBP 6908 broad.mit.edu 37 6 170866043 170866043 + 5'UTR SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBP 6908 broad.mit.edu;hgsc.bcm.edu 37 6 170871067 170871067 + Silent SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBP 6908 hgsc.bcm.edu 37 6 170871043 170871043 + Silent SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBP 6908 hgsc.bcm.edu 37 6 170871055 170871055 + Silent SNP G G A rs112928724 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBP 6908 hgsc.bcm.edu 37 6 170871061 170871061 + Silent SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBP 6908 hgsc.bcm.edu 37 6 170871085 170871085 + Silent SNP G G A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBP 6908 hgsc.bcm.edu 37 6 170871097 170871097 + Silent SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBP 6908 hgsc.bcm.edu;ucsc.edu 37 6 170878701 170878703 + In_Frame_Del DEL GAA GAA - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 GAA GAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBPL2 387332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55895569 55895569 + Silent SNP G G A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBR1 10716 hgsc.bcm.edu 37 2 162273245 162273245 + Silent SNP T T G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBRG4 9238 broad.mit.edu 37 7 45139801 45139802 + 3'UTR INS - G G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX10 347853 broad.mit.edu 37 11 67401787 67401787 + Missense_Mutation SNP T G G novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX15 6913 broad.mit.edu 37 1 119426881 119426881 + 3'UTR SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX1 6899 broad.mit.edu 37 22 19767018 19767018 + 3'UTR SNP G T T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX18 9096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 85447027 85447027 + Missense_Mutation SNP G G T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX19 9095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168260459 168260459 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX19 9095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168269666 168269666 + Silent SNP C C T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX21 30009 hgsc.bcm.edu 37 17 45822284 45822285 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX2 6909 broad.mit.edu 37 17 59482166 59482166 + Intron DEL C - - rs145107999 bycluster;by1000genomes TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX2 6909 broad.mit.edu 37 17 59482166 59482166 + Intron DEL C - - rs145107999 bycluster;by1000genomes TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX2 6909 broad.mit.edu 37 17 59482169 59482169 + Intron DEL C - - rs35619711 unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX2 6909 broad.mit.edu 37 17 59482169 59482169 + Intron DEL C - - rs35619711 unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX3 6926 broad.mit.edu 37 12 115117955 115117955 + Intron SNP T G G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX3 6926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 115117393 115117393 + Silent SNP A A G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX4 9496 broad.mit.edu 37 17 59561081 59561081 + 3'UTR DEL A - - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBX4 9496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 59557596 59557596 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX4 9496 hgsc.bcm.edu 37 17 59560732 59560732 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBX6 6911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30099894 30099894 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TBX6 6911 hgsc.bcm.edu;ucsc.edu 37 16 30097589 30097589 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TBXA2R 6915 broad.mit.edu 37 19 3600380 3600380 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TBXAS1 6916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139529248 139529248 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCAP 8557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37821618 37821618 + Silent SNP T T A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEA2 6919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62698282 62698282 + Silent SNP G G C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEA2 6919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62703549 62703549 + 3'UTR SNP T T C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEA3 6920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 23743879 23743879 + Silent SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEA3 6920 hgsc.bcm.edu;ucsc.edu 37 1 23751094 23751094 + Silent SNP G G A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCEAL2 140597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101382231 101382231 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEAL3 85012 broad.mit.edu;hgsc.bcm.edu 37 X 102864047 102864047 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEAL3 85012 hgsc.bcm.edu 37 X 102864334 102864334 + Silent SNP G G A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEAL3 85012 hgsc.bcm.edu;ucsc.edu 37 X 102864442 102864442 + Silent SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCEAL4 79921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102841696 102841696 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEAL5 340543 broad.mit.edu;hgsc.bcm.edu 37 X 102529072 102529072 + Silent SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCEAL6 158931 hgsc.bcm.edu 37 X 101395780 101395781 + Frame_Shift_Ins INS - - G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEAL6 158931 hgsc.bcm.edu 37 X 101396082 101396082 + Silent SNP A A G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEAL7 56849 broad.mit.edu 37 X 102587009 102587009 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCEAL8 90843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102508844 102508844 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEB1 6921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74858967 74858967 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TCEB1 6921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74858968 74858968 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T T A T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TCEB2 6923 hgsc.bcm.edu 37 16 2825480 2825481 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCEB3C 162699 broad.mit.edu 37 18 44554961 44554961 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCERG1 10915 broad.mit.edu 37 5 145878250 145878250 + Splice_Site SNP G A A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCERG1 10915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145843272 145843272 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCERG1 10915 hgsc.bcm.edu 37 5 145838653 145838653 + Silent SNP C C T rs112548582 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCERG1 10915 hgsc.bcm.edu 37 5 145862191 145862191 + Silent SNP A A G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCERG1 10915 hgsc.bcm.edu 37 5 145862191 145862191 + Silent SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCERG1L 256536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 132965070 132965070 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57458628 57458628 + Silent SNP C C A rs147522860 unknown;alternate_allele TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57489997 57489997 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57489998 57489998 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57565320 57565320 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57565458 57565458 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF19 6941 broad.mit.edu 37 6 31127384 31127384 + Silent SNP C T T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF20 6942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42605745 42605745 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF20 6942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42607162 42607162 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF20 6942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42609019 42609019 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF20 6942 broad.mit.edu;ucsc.edu 37 22 42605746 42605746 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF20 6942 broad.mit.edu;ucsc.edu 37 22 42607966 42607966 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF20 6942 hgsc.bcm.edu;ucsc.edu 37 22 42609902 42609902 + Silent SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCF20 6942 hgsc.bcm.edu;ucsc.edu 37 22 42610520 42610520 + Silent SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCF20 6942 hgsc.bcm.edu;ucsc.edu 37 22 42610538 42610538 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCF21 6943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 134210722 134210722 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF25 22980 broad.mit.edu 37 16 89970484 89970484 + Intron SNP T G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF25 22980 broad.mit.edu;hgsc.bcm.edu 37 16 89949958 89949958 + Intron SNP G G T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF25 22980 hgsc.bcm.edu 37 16 89977623 89977623 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCF3 6929 broad.mit.edu 37 19 1609801 1609802 + 3'UTR INS - A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF3 6929 broad.mit.edu 37 19 1623968 1623968 + Silent SNP C T T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF3 6929 broad.mit.edu 37 19 1625673 1625673 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF3 6929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1612391 1612391 + Missense_Mutation SNP C C A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF3 6929 hgsc.bcm.edu 37 19 1624007 1624007 + Splice_Region SNP A A G rs55677929 bycluster;byfrequency;by1000genomes TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCF3 6929 hgsc.bcm.edu 37 19 1650219 1650219 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCF4 6925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 52937099 52937099 + Silent SNP G G A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCF7 6932 broad.mit.edu 37 5 133451702 133451702 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF7 6932 broad.mit.edu 37 5 133451702 133451702 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF7 6932 broad.mit.edu 37 5 133481533 133481533 + Intron SNP G A A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF7 6932 broad.mit.edu 37 5 133482273 133482273 + 3'UTR SNP A G G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF7L2 6934 broad.mit.edu 37 10 114710470 114710470 + 5'UTR SNP C T T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF7L2 6934 broad.mit.edu 37 10 114710508 114710508 + 5'UTR DEL A - - novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCF7L2 6934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 114901063 114901063 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHH 7062 broad.mit.edu 37 1 152080550 152080550 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCHH 7062 broad.mit.edu 37 1 152084627 152084627 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCHH 7062 broad.mit.edu;ucsc.edu 37 1 152083904 152083904 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCHH 7062 broad.mit.edu;ucsc.edu 37 1 152084846 152084846 + Silent SNP G T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCHH 7062 hgsc.bcm.edu 37 1 152082257 152082257 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHH 7062 hgsc.bcm.edu 37 1 152082376 152082376 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHH 7062 hgsc.bcm.edu 37 1 152082484 152082484 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHH 7062 hgsc.bcm.edu 37 1 152084175 152084176 + In_Frame_Ins INS - - TGCTGCTCGCGCCTCTCC novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHH 7062 hgsc.bcm.edu 37 1 152084216 152084216 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHH 7062 hgsc.bcm.edu 37 1 152084694 152084696 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHHL1 126637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152060504 152060504 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCHHL1 126637 hgsc.bcm.edu;ucsc.edu 37 1 152058664 152058664 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCL6 27004 broad.mit.edu;hgsc.bcm.edu 37 14 96129988 96129988 + RNA SNP T T C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCL6 27004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96129842 96129842 + RNA SNP T T C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCL6 27004 hgsc.bcm.edu;ucsc.edu 37 14 96129883 96129883 + Intron SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCN1 6947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59622280 59622280 + Silent SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCN2 6948 broad.mit.edu 37 22 31022643 31022643 + 3'UTR SNP A C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCN2 6948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31018990 31018990 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCOF1 6949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149743741 149743741 + Missense_Mutation SNP G G T rs145365677 unknown;alternate_allele TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCOF1 6949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149749096 149749096 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCOF1 6949 hgsc.bcm.edu 37 5 149776067 149776067 + Missense_Mutation SNP A A G rs55980697 bycluster;byfrequency;by1000genomes TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCOF1 6949 hgsc.bcm.edu;ucsc.edu 37 5 149771631 149771632 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP10 6953 broad.mit.edu 37 6 167789404 167789404 + Intron SNP C G G rs28409124 bycluster;by1000genomes TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCP10 6953 broad.mit.edu 37 6 167789428 167789431 + Intron DEL AGTT - - novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 AGTT AGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCP10 6953 broad.mit.edu 37 6 167789428 167789431 + Intron DEL AGTT - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 AGTT AGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCP10 6953 hgsc.bcm.edu 37 6 167789488 167789488 + Silent SNP C C T rs9355636 unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP10 6953 hgsc.bcm.edu 37 6 167791530 167791530 + Missense_Mutation SNP G G C rs56018421 bycluster TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCP10L2 401285 hgsc.bcm.edu 37 6 167595371 167595371 + Silent SNP T T C rs2989550 bycluster TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35086049 35086049 + Silent SNP A A G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35086135 35086135 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35086231 35086231 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35087006 35087006 + Silent SNP A A T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP11 6954 broad.mit.edu;ucsc.edu 37 6 35107857 35107857 + Intron DEL A - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCP11 6954 hgsc.bcm.edu;ucsc.edu 37 6 35089937 35089937 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCP11L1 55346 broad.mit.edu 37 11 33097696 33097696 + Intron SNP T C C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCP11L1 55346 hgsc.bcm.edu;ucsc.edu 37 11 33065367 33065367 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCP1 6950 broad.mit.edu 37 6 160209788 160209788 + Intron DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TCTA 6988 hgsc.bcm.edu;ucsc.edu 37 3 49450062 49450062 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TCTE1 202500 broad.mit.edu;hgsc.bcm.edu 37 6 44255550 44255550 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TCTEX1D2 255758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196022891 196022891 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDG 6996 broad.mit.edu 37 12 104374442 104374442 + Intron SNP A G G rs1866074 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDG 6996 broad.mit.edu 37 12 104380948 104380948 + 3'UTR SNP A C C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDG 6996 hgsc.bcm.edu 37 12 104376608 104376608 + Silent SNP G G A rs61937629 bycluster;byfrequency TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDG 6996 hgsc.bcm.edu 37 12 104376700 104376700 + Missense_Mutation SNP A A C rs61937630 bycluster TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDG 6996 hgsc.bcm.edu 37 12 104379378 104379378 + Intron SNP C C A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDGF1 6997 broad.mit.edu 37 3 46622816 46622816 + 3'UTR SNP A C C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDGF1 6997 broad.mit.edu 37 3 46623001 46623001 + 3'UTR DEL T - - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDGF3 0 broad.mit.edu 37 X 109764826 109764826 + RNA SNP C G G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDP1 55775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 90437547 90437547 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDP1 55775 hgsc.bcm.edu 37 14 90458250 90458250 + Intron SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDP1 55775 hgsc.bcm.edu;ucsc.edu 37 14 90459807 90459807 + Silent SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDP2 51567 broad.mit.edu;hgsc.bcm.edu 37 6 24650952 24650952 + 3'UTR SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDP2 51567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24658870 24658870 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD10 126668 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154493879 154493879 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD10 126668 hgsc.bcm.edu 37 1 154514536 154514537 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD10 126668 hgsc.bcm.edu 37 1 154517301 154517301 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD10 126668 hgsc.bcm.edu;ucsc.edu 37 1 154517301 154517301 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD1 56165 broad.mit.edu;ucsc.edu 37 10 115962900 115962900 + Nonsense_Mutation SNP A T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDRD3 81550 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 61103273 61103273 + Silent SNP A A G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD3 81550 hgsc.bcm.edu 37 13 61102576 61102578 + In_Frame_Del DEL ATA ATA - rs148917045 bycluster;by1000genomes TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 ATA ATA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD3 81550 hgsc.bcm.edu;ucsc.edu 37 13 61084777 61084777 + Silent SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD5 163589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 179620176 179620176 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD5 163589 hgsc.bcm.edu 37 1 179561874 179561874 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD5 163589 hgsc.bcm.edu;ucsc.edu 37 1 179561765 179561765 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD6 221400 broad.mit.edu 37 6 46656688 46656688 + Nonsense_Mutation SNP G T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46657639 46657639 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46658611 46658611 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46660119 46660119 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46661744 46661744 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD6 221400 broad.mit.edu;ucsc.edu 37 6 46657418 46657418 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TDRD6 221400 hgsc.bcm.edu 37 6 46656689 46656689 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD6 221400 hgsc.bcm.edu 37 6 46658231 46658231 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD6 221400 hgsc.bcm.edu 37 6 46659688 46659688 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TDRD7 23424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100234634 100234634 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD7 23424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100234635 100234635 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRD9 122402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 104441754 104441754 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRKH 11022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151751219 151751219 + Silent SNP A A G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TDRKH 11022 hgsc.bcm.edu;ucsc.edu 37 1 151751697 151751697 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEAD1 7003 broad.mit.edu 37 11 12958817 12958817 + 3'UTR SNP T C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEAD2 8463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49852034 49852034 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEAD3 7005 hgsc.bcm.edu 37 6 35443110 35443110 + Splice_Region SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEC 100124696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48147523 48147523 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEC 100124696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48148400 48148400 + Silent SNP A A T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEC 100124696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48170607 48170607 + Missense_Mutation SNP T T G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEC 100124696 hgsc.bcm.edu 37 4 48151686 48151686 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEC 100124696 hgsc.bcm.edu;ucsc.edu 37 4 48139497 48139497 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEC 100124696 hgsc.bcm.edu;ucsc.edu 37 4 48139499 48139499 + Silent SNP A A G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEC 100124696 hgsc.bcm.edu;ucsc.edu 37 4 48147535 48147535 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECPR1 25851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 97851019 97851019 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECPR1 25851 hgsc.bcm.edu 37 7 97870246 97870246 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TECPR1 25851 hgsc.bcm.edu 37 7 97874261 97874261 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TECPR2 9895 broad.mit.edu;hgsc.bcm.edu 37 14 102916037 102916037 + Silent SNP G G A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECPR2 9895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102901086 102901086 + Silent SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECPR2 9895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102906859 102906859 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECR 9524 broad.mit.edu 37 19 14673981 14673981 + Intron SNP C A A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TECRL 253017 broad.mit.edu;hgsc.bcm.edu 37 4 65274893 65274893 + Silent SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECRL 253017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 65147225 65147225 + Silent SNP A A G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECRL 253017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 65274994 65274994 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECRL 253017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 65274995 65274995 + Silent SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECTA 7007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 120980198 120980198 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECTA 7007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 120989265 120989265 + Silent SNP G G A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECTA 7007 hgsc.bcm.edu;ucsc.edu 37 11 121000530 121000530 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TECTA 7007 hgsc.bcm.edu;ucsc.edu 37 11 121030869 121030870 + Frame_Shift_Ins INS - - AT novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECTB 6975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 114046095 114046095 + Silent SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECTB 6975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 114053509 114053509 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TECTB 6975 hgsc.bcm.edu 37 10 114063068 114063068 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEF 7008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41794473 41794473 + 3'UTR SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEK 7010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27109633 27109633 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEK 7010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27202840 27202840 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEKT2 27285 broad.mit.edu 37 1 36553613 36553613 + Silent SNP G T T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEKT2 27285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36552420 36552420 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEKT3 64518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15207259 15207259 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEKT4 150483 broad.mit.edu 37 2 95542539 95542539 + 3'UTR SNP G A A rs80350895 bycluster TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEKT4 150483 broad.mit.edu 37 2 95542556 95542556 + 3'UTR SNP C T T rs62147444 bycluster;byfrequency TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEKT4 150483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 95537442 95537442 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEKT4 150483 hgsc.bcm.edu 37 2 95539855 95539855 + Splice_Site SNP T T G novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEKT4 150483 hgsc.bcm.edu 37 2 95541442 95541442 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEKT5 146279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10788652 10788652 + Missense_Mutation SNP C C A rs61731533 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEKT5 146279 broad.mit.edu;ucsc.edu 37 16 10788637 10788637 + Missense_Mutation SNP T C C rs145065368 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TELO2 9894 broad.mit.edu 37 16 1550655 1550655 + Silent SNP C T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TELO2 9894 broad.mit.edu 37 16 1557648 1557648 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TELO2 9894 broad.mit.edu;hgsc.bcm.edu 37 16 1557029 1557029 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TELO2 9894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1552946 1552946 + Silent SNP G G T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TENC1 23371 broad.mit.edu 37 12 53449821 53449821 + Intron SNP G C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TENC1 23371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53448982 53448982 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TENC1 23371 broad.mit.edu;ucsc.edu 37 12 53453510 53453510 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TENC1 23371 hgsc.bcm.edu;ucsc.edu 37 12 53453522 53453531 + Frame_Shift_Del DEL GCCTACAGCA GCCTACAGCA - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 GCCTACAGCA GCCTACAGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEP1 7011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20847178 20847178 + Silent SNP G G A rs138032035 unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEP1 7011 hgsc.bcm.edu 37 14 20864842 20864842 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEP1 7011 hgsc.bcm.edu 37 14 20864870 20864870 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TERF2IP 54386 broad.mit.edu 37 16 75690596 75690596 + 3'UTR SNP C G G rs192591533 by1000genomes;alternate_allele TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TERT 7015 broad.mit.edu 37 5 1255447 1255447 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx TERT 7015 broad.mit.edu;hgsc.bcm.edu 37 5 1294723 1294723 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TERT 7015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1272327 1272327 + Silent SNP C C A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TERT 7015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1282650 1282650 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TERT 7015 hgsc.bcm.edu 37 5 1254527 1254527 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID TES 26136 broad.mit.edu 37 7 115893920 115893921 + Intron DEL GT - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TES 26136 broad.mit.edu 37 7 115893920 115893921 + Intron DEL GT - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TESC 54997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117477015 117477015 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TESC 54997 hgsc.bcm.edu;ucsc.edu 37 12 117513065 117513065 + RNA SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TESK1 7016 broad.mit.edu;hgsc.bcm.edu 37 9 35608911 35608911 + Silent SNP G G C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TESK2 10420 broad.mit.edu 37 1 45810346 45810346 + 3'UTR DEL C - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TESK2 10420 broad.mit.edu 37 1 45810498 45810498 + 3'UTR SNP G T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TET1 80312 hgsc.bcm.edu 37 10 70432649 70432649 + Intron SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TET1 80312 hgsc.bcm.edu 37 10 70450816 70450816 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET1 80312 hgsc.bcm.edu 37 10 70450818 70450818 + Silent SNP A A G novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET1 80312 hgsc.bcm.edu;ucsc.edu 37 10 70451380 70451382 + In_Frame_Del DEL AAG AAG - novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 AAG AAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TET2 54790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106156445 106156445 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TET2 54790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106157368 106157368 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TET2 54790 hgsc.bcm.edu 37 4 106155681 106155681 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID TET2 54790 hgsc.bcm.edu 37 4 106180797 106180797 + Silent SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET2 54790 hgsc.bcm.edu 37 4 106190890 106190890 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET2 54790 hgsc.bcm.edu;ucsc.edu 37 4 106156048 106156048 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID TET2 54790 hgsc.bcm.edu;ucsc.edu 37 4 106156075 106156075 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET2 54790 hgsc.bcm.edu;ucsc.edu 37 4 106193890 106193890 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET2 54790 hgsc.bcm.edu;ucsc.edu 37 4 106196809 106196809 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TET3 200424 broad.mit.edu 37 2 74301004 74301004 + Intron DEL A - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TET3 200424 broad.mit.edu 37 2 74328533 74328533 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TET3 200424 hgsc.bcm.edu;ucsc.edu 37 2 74328262 74328263 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX101 83639 hgsc.bcm.edu;ucsc.edu 37 19 43922506 43922506 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEX10 54881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 103109629 103109629 + Silent SNP T T G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX11 56159 broad.mit.edu 37 X 69871299 69871299 + Splice_Site SNP C A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEX11 56159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69825332 69825332 + Silent SNP C C A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX11 56159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69942475 69942475 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX11 56159 hgsc.bcm.edu;ucsc.edu 37 X 69811638 69811638 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEX12 56158 broad.mit.edu;hgsc.bcm.edu 37 11 112039968 112039968 + Intron SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX13A 56157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 104463697 104463697 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX13A 56157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 104464107 104464107 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX13A 56157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 104464656 104464656 + Silent SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX13A 56157 hgsc.bcm.edu 37 X 104464282 104464282 + Frame_Shift_Del DEL C C - rs140438281 unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX13A 56157 hgsc.bcm.edu 37 X 104464282 104464282 + Frame_Shift_Del DEL C C - rs140438281 unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX13B 56156 broad.mit.edu 37 X 107224252 107224252 + 3'UTR SNP T C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEX14 56155 broad.mit.edu 37 17 56651592 56651592 + Silent SNP T C C novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEX14 56155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56638955 56638955 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TEX14 56155 hgsc.bcm.edu 37 17 56638928 56638928 + Silent SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEX15 56154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 30702516 30702516 + Missense_Mutation SNP C C T rs148542296 unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX15 56154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 30706524 30706524 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX15 56154 broad.mit.edu;ucsc.edu 37 8 30700538 30700538 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TEX2 55852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62228234 62228234 + Silent SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX2 55852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62291574 62291574 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TEX2 55852 hgsc.bcm.edu 37 17 62290991 62290991 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEX2 55852 hgsc.bcm.edu 37 17 62291518 62291518 + Silent SNP G G A novel unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TEX264 51368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51708346 51708346 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFAP2A 7020 hgsc.bcm.edu 37 6 10410466 10410467 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFAP2B 7021 broad.mit.edu 37 6 50811238 50811238 + 3'UTR DEL T - - rs140657288 bycluster;by1000genomes TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TFAP2C 7022 broad.mit.edu 37 20 55206674 55206674 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TFAP2C 7022 hgsc.bcm.edu;ucsc.edu 37 20 55208541 55208541 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFAP4 7023 hgsc.bcm.edu 37 16 4312339 4312339 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TFB1M 51106 hgsc.bcm.edu;ucsc.edu 37 6 155635515 155635515 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFB2M 64216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246707837 246707837 + Silent SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFB2M 64216 hgsc.bcm.edu 37 1 246720752 246720752 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TFCP2L1 29842 broad.mit.edu 37 2 121981867 121981867 + 3'UTR SNP G A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TFDP2 7029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141692908 141692908 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TFDP2 7029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141697381 141697381 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TFDP2 7029 hgsc.bcm.edu;ucsc.edu 37 3 141671843 141671843 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G G - G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TFDP2 7029 hgsc.bcm.edu;ucsc.edu 37 3 141678681 141678681 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM SOLID TFDP2 7029 hgsc.bcm.edu;ucsc.edu 37 3 141693004 141693004 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132351243 132351243 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132351883 132351883 + Silent SNP G G A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132351937 132351937 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132352095 132352095 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFE3 7030 broad.mit.edu 37 X 48900725 48900725 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TFEB 7942 broad.mit.edu 37 6 41673473 41673473 + Intron DEL C - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TFEB 7942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41658461 41658461 + Silent SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFEB 7942 hgsc.bcm.edu;ucsc.edu 37 6 41655521 41655521 + Nonsense_Mutation SNP C C A novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TFEC 22797 broad.mit.edu 37 7 115624530 115624530 + 5'UTR SNP A T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TFEC 22797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 115624462 115624462 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFF1 7031 hgsc.bcm.edu 37 21 43783445 43783445 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TFF2 7032 hgsc.bcm.edu 37 21 43771056 43771056 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TFPI 7035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 188349545 188349545 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFPT 29844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54618679 54618679 + 5'UTR SNP A A T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFR2 7036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100238672 100238672 + Silent SNP G G A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TFR2 7036 hgsc.bcm.edu;ucsc.edu 37 7 100218519 100218519 + Silent SNP C C G novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TG 7038 broad.mit.edu;hgsc.bcm.edu 37 8 134034366 134034366 + Missense_Mutation SNP G G A rs121912650 unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TG 7038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 133911118 133911118 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TG 7038 broad.mit.edu;ucsc.edu 37 8 134030154 134030154 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx TG 7038 broad.mit.edu;ucsc.edu 37 8 134107431 134107431 + Silent SNP C A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TG 7038 hgsc.bcm.edu 37 8 133941401 133941401 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID TG 7038 hgsc.bcm.edu;ucsc.edu 37 8 133911116 133911116 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TG 7038 hgsc.bcm.edu;ucsc.edu 37 8 133925416 133925416 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFA(dist=21314) 0 hgsc.bcm.edu;ucsc.edu 37 2 70802419 70802419 + IGR SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFB1I1 7041 broad.mit.edu 37 16 31488980 31488981 + 3'UTR INS - A A novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TGFB1I1 7041 hgsc.bcm.edu 37 16 31487457 31487457 + Missense_Mutation SNP T T A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGFB2 7042 broad.mit.edu 37 1 218579626 218579626 + Intron DEL G - - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TGFB2 7042 broad.mit.edu;hgsc.bcm.edu 37 1 218609363 218609363 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFB2 7042 hgsc.bcm.edu 37 1 218578652 218578652 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGFB3 7043 hgsc.bcm.edu;ucsc.edu 37 14 76446970 76446970 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135379760 135379760 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135382106 135382106 + Silent SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135382107 135382107 + Silent SNP C C T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135385220 135385220 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBR2 7048 hgsc.bcm.edu 37 3 30732950 30732950 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGFBR3 7049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 92184975 92184975 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBRAP1 9392 broad.mit.edu 37 2 105883625 105883652 + 3'UTR DEL TTCCATGTACATTCATAGAGCCTGGTCA - - rs11273216 bycluster TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 TTCCATGTACATTCATAGAGCCTGGTCA TTCCATGTACATTCATAGAGCCTGGTCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TGFBRAP1 9392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105886106 105886106 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBRAP1 9392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105914998 105914998 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBRAP1 9392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105915065 105915065 + Silent SNP C C T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGFBRAP1 9392 hgsc.bcm.edu 37 2 105924721 105924721 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGFBRAP1 9392 hgsc.bcm.edu;ucsc.edu 37 2 105889469 105889469 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGIF1 7050 hgsc.bcm.edu 37 18 3447755 3447755 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGIF2LX 90316 broad.mit.edu;hgsc.bcm.edu 37 X 89177557 89177557 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM1 7051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24731316 24731316 + Silent SNP G G A novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM1 7051 hgsc.bcm.edu 37 14 24724346 24724346 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM1 7051 hgsc.bcm.edu 37 14 24729679 24729679 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM1 7051 hgsc.bcm.edu;ucsc.edu 37 14 24727575 24727575 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM2 7052 hgsc.bcm.edu 37 20 36784289 36784289 + Silent SNP C C G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM3 7053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2312884 2312884 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TGM3 7053 hgsc.bcm.edu 37 20 2291724 2291724 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM5 9333 broad.mit.edu;hgsc.bcm.edu 37 15 43533161 43533161 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43525807 43525807 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43531237 43531237 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43552389 43552389 + Silent SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43552495 43552495 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43552757 43552757 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM5 9333 hgsc.bcm.edu 37 15 43525886 43525886 + Splice_Site SNP C C A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM6 343641 broad.mit.edu;hgsc.bcm.edu 37 20 2413340 2413340 + 3'UTR SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM6 343641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2381082 2381082 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM6 343641 broad.mit.edu;ucsc.edu 37 20 2398051 2398051 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TGM6 343641 hgsc.bcm.edu 37 20 2375966 2375966 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGM7 116179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43571460 43571460 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGM7 116179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43577100 43577100 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TGS1 96764 hgsc.bcm.edu 37 8 56711602 56711602 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TGS1 96764 hgsc.bcm.edu 37 8 56717519 56717519 + Silent SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TH1L 51497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57561823 57561823 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TH1L 51497 hgsc.bcm.edu;ucsc.edu 37 20 57567073 57567076 + Frame_Shift_Del DEL TAGG TAGG - novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 TAGG TAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TH 7054 hgsc.bcm.edu;ucsc.edu 37 11 2185540 2185540 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THADA 63892 broad.mit.edu 37 2 43571338 43571338 + Missense_Mutation SNP G C C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THADA 63892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43800089 43800089 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THADA 63892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43801938 43801938 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THADA 63892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43805654 43805654 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THADA 63892 hgsc.bcm.edu;ucsc.edu 37 2 43735802 43735802 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THAP10 56906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 71174954 71174954 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP11 57215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67877045 67877045 + Silent SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP11 57215 hgsc.bcm.edu 37 16 67876820 67876820 + Silent SNP G G A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP2 83591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 72068028 72068028 + Silent SNP T T G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP2 83591 hgsc.bcm.edu 37 12 72068032 72068032 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THAP3 90326 broad.mit.edu;ucsc.edu 37 1 6694078 6694079 + Splice_Site DEL AG - - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THAP4 51078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242545863 242545863 + Silent SNP C C A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP5 168451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108205177 108205177 + Missense_Mutation SNP G G T rs192004311 by1000genomes;alternate_allele TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP6 152815 hgsc.bcm.edu;ucsc.edu 37 4 76440718 76440721 + Frame_Shift_Del DEL AGTT AGTT - novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 AGTT AGTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83838698 83838698 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83838940 83838940 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83839153 83839153 + Silent SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83839957 83839957 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THAP9 79725 hgsc.bcm.edu 37 4 83838547 83838547 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS1 7057 broad.mit.edu;hgsc.bcm.edu 37 15 39882824 39882824 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS1 7057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 39877708 39877708 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS1 7057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 39881491 39881491 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS1 7057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 39882215 39882215 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS1 7057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 39885311 39885311 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS1 7057 hgsc.bcm.edu 37 15 39879677 39879677 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS1 7057 hgsc.bcm.edu 37 15 39887564 39887564 + Silent SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS2 7058 broad.mit.edu 37 6 169617847 169617847 + 3'UTR SNP C G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THBS2 7058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 169634969 169634969 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS2 7058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 169648851 169648851 + Silent SNP G G C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS2 7058 hgsc.bcm.edu 37 6 169617934 169617934 + Intron SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS2 7058 hgsc.bcm.edu;ucsc.edu 37 6 169634863 169634863 + Silent SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS2 7058 hgsc.bcm.edu;ucsc.edu 37 6 169649025 169649025 + Silent SNP G G T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS3 7059 broad.mit.edu;hgsc.bcm.edu 37 1 155172612 155172612 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS3 7059 broad.mit.edu;hgsc.bcm.edu 37 1 155172613 155172613 + Missense_Mutation SNP T T A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS3 7059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155169611 155169612 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS3 7059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155170785 155170785 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS3 7059 hgsc.bcm.edu 37 1 155166922 155166922 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS3 7059 hgsc.bcm.edu 37 1 155174663 155174663 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS4 7060 hgsc.bcm.edu 37 5 79351734 79351734 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THBS4 7060 hgsc.bcm.edu 37 5 79351746 79351746 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS4 7060 hgsc.bcm.edu 37 5 79375847 79375847 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THBS4 7060 hgsc.bcm.edu;ucsc.edu 37 5 79351852 79351852 + Silent SNP A A T rs71594659 unknown;alternate_allele TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THEG 51298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 362387 362387 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THEG 51298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 375847 375847 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THEG 51298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 375870 375870 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THEG 51298 hgsc.bcm.edu 37 19 362217 362217 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THEM4 117145 broad.mit.edu 37 1 151847232 151847232 + 3'UTR SNP G A A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THEM5 284486 broad.mit.edu 37 1 151820746 151820746 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THEM5 284486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151820729 151820729 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THEM5 284486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151824751 151824751 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THEMIS 387357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 128134336 128134336 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THEMIS 387357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 128150971 128150971 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THG1L 54974 broad.mit.edu 37 5 157166726 157166726 + 3'UTR DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THNSL1 79896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 25312229 25312229 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THNSL2 55258 hgsc.bcm.edu 37 2 88472689 88472689 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THNSL2 55258 hgsc.bcm.edu 37 2 88485426 88485426 + Silent SNP G G T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THOC1 9984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 214641 214641 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THOC2 57187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 122758390 122758390 + Splice_Site SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THOC2 57187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 122769988 122769988 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THOC3 84321 broad.mit.edu 37 5 175387036 175387036 + Missense_Mutation SNP C T T rs139761351 unknown;alternate_allele TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THOC3 84321 hgsc.bcm.edu 37 5 175388335 175388335 + Silent SNP T T C rs11552883 bycluster;byfrequency TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THOC3 84321 hgsc.bcm.edu 37 5 175392006 175392006 + Missense_Mutation SNP C C T rs3185226 unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THOC4 0 broad.mit.edu 37 17 79845834 79845835 + 3'UTR INS - A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THOC4 0 broad.mit.edu 37 17 79845851 79845851 + 3'UTR SNP A G G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THOC4 0 broad.mit.edu;hgsc.bcm.edu 37 17 79846407 79846407 + Missense_Mutation SNP C C A rs150564817 unknown;alternate_allele TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THOC4 0 hgsc.bcm.edu 37 17 79846140 79846140 + Nonsense_Mutation SNP G G A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THOC5 8563 hgsc.bcm.edu;ucsc.edu 37 22 29914993 29914997 + Frame_Shift_Del DEL ACCTA ACCTA - novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 ACCTA ACCTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THOC6 79228 hgsc.bcm.edu;ucsc.edu 37 16 3076934 3076934 + Intron SNP G G C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THRA 7067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38243108 38243108 + Splice_Site SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THRA 7067 hgsc.bcm.edu 37 17 38245611 38245612 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THRAP3 9967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36755101 36755101 + Missense_Mutation SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THRAP3 9967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36755253 36755253 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THRAP3 9967 hgsc.bcm.edu 37 1 36755272 36755272 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THRAP3 9967 hgsc.bcm.edu 37 1 36755272 36755272 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THRB(dist=679584) 0 broad.mit.edu;hgsc.bcm.edu 37 3 25215897 25215897 + IGR SNP C C A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD1 55901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52952408 52952408 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD1 55901 hgsc.bcm.edu 37 13 52952072 52952073 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD1 55901 hgsc.bcm.edu 37 13 52952681 52952681 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THSD1P1 374500 broad.mit.edu 37 13 52793908 52793916 + Intron DEL CTCAGTTGG - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 CTCAGTTGG CTCAGTTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD1P1 374500 broad.mit.edu 37 13 52803480 52803480 + RNA SNP G T T rs2768223 bycluster TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD1P1 374500 broad.mit.edu 37 13 52857470 52857470 + RNA SNP A G G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD4 79875 broad.mit.edu;ucsc.edu 37 15 72039333 72039333 + Silent SNP C T T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD4 79875 hgsc.bcm.edu;ucsc.edu 37 15 71952920 71952920 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7A 221981 broad.mit.edu;ucsc.edu 37 7 11446611 11446611 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD7A 221981 hgsc.bcm.edu;ucsc.edu 37 7 11500386 11500386 + Missense_Mutation SNP C C G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID THSD7B 80731 broad.mit.edu 37 2 138434352 138434352 + 3'UTR SNP G T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138033500 138033500 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138033572 138033572 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138330034 138330034 + Silent SNP G G A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138414637 138414637 + Silent SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138414712 138414712 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 138434176 138434176 + 3'UTR SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 broad.mit.edu;ucsc.edu 37 2 138421031 138421031 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THSD7B 80731 hgsc.bcm.edu;ucsc.edu 37 2 137917883 137917884 + Frame_Shift_Del DEL GT GT - novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 hgsc.bcm.edu;ucsc.edu 37 2 137928375 137928375 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THSD7B 80731 hgsc.bcm.edu;ucsc.edu 37 2 138208421 138208421 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THTPA 79178 broad.mit.edu 37 14 23982602 23982603 + Intron DEL GT - - rs146712353 by1000genomes TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx THUMPD2 80745 hgsc.bcm.edu;ucsc.edu 37 2 39993264 39993264 + RNA SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THY1 7070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119290972 119290972 + Silent SNP C C G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq THYN1 29087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134122802 134122802 + 5'UTR SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIA1 7072 broad.mit.edu 37 2 70475611 70475611 + 5'UTR SNP A C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIA1 7072 broad.mit.edu 37 2 70475612 70475612 + Translation_Start_Site SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIA1 7072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70441538 70441538 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAF1 9220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27401024 27401024 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAL1 7073 broad.mit.edu 37 10 121333766 121333766 + 3'UTR DEL C - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIAL1 7073 hgsc.bcm.edu;ucsc.edu 37 10 121337051 121337051 + Intron SNP T T C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAM1 7074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 32624302 32624302 + Silent SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAM1 7074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 32638828 32638828 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAM1 7074 hgsc.bcm.edu;ucsc.edu 37 21 32624303 32624303 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAM2 26230 broad.mit.edu 37 6 155574768 155574768 + Intron DEL C - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIAM2 26230 broad.mit.edu 37 6 155578323 155578323 + 3'UTR SNP G T T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIAM2 26230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155498049 155498049 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIAM2 26230 hgsc.bcm.edu 37 6 155451458 155451458 + Silent SNP T T C novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIAM2 26230 hgsc.bcm.edu 37 6 155577714 155577714 + Missense_Mutation SNP G G C rs114239511 bycluster;byfrequency;by1000genomes TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TICAM1 148022 broad.mit.edu;hgsc.bcm.edu 37 19 4817479 4817479 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TICAM1 148022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4817211 4817211 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TICAM1 148022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4817858 4817858 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TICAM2 353376 hgsc.bcm.edu 37 5 114916661 114916662 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIE1 7075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43773140 43773140 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIE1 7075 hgsc.bcm.edu;ucsc.edu 37 1 43770962 43770962 + Silent SNP T T G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIE1 7075 hgsc.bcm.edu;ucsc.edu 37 1 43777725 43777725 + Missense_Mutation SNP G G A rs141628049 unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIFA 92610 broad.mit.edu 37 4 113198880 113198885 + 3'UTR DEL AATGAT - - rs145580634 bycluster;by1000genomes TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 AATGAT AATGAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIFA 92610 broad.mit.edu 37 4 113198889 113198890 + 3'UTR DEL AC - - rs5861096 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIFAB 497189 broad.mit.edu 37 5 134784962 134784962 + 3'UTR SNP C A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIGD2 166815 hgsc.bcm.edu 37 4 90034133 90034133 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIGD6 81789 broad.mit.edu;ucsc.edu 37 5 149375454 149375454 + Missense_Mutation SNP T C C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIGIT 201633 broad.mit.edu 37 3 114027084 114027084 + 3'UTR SNP A G G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TIMELESS 8914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56816773 56816773 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIMELESS 8914 hgsc.bcm.edu;ucsc.edu 37 12 56814823 56814823 + Silent SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIMM17A 10440 broad.mit.edu;hgsc.bcm.edu 37 1 201924654 201924654 + 5'UTR SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIMM17A 10440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201926640 201926640 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIMM17B 10245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48751506 48751506 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIMM23 100287932 hgsc.bcm.edu 37 10 51620317 51620317 + Splice_Region SNP A A G rs4962275 byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIMM23 100287932 hgsc.bcm.edu 37 10 51623174 51623174 + Missense_Mutation SNP C C A rs61847112 unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIMM23 100287932 hgsc.bcm.edu;ucsc.edu 37 10 51592504 51592504 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIMM44 10469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7999040 7999040 + Silent SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIMM44 10469 hgsc.bcm.edu 37 19 7997586 7997586 + Silent SNP G G T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TIMP3 7078 hgsc.bcm.edu 37 22 33255366 33255366 + 3'UTR SNP C C T rs151254004 unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TINAG 27283 broad.mit.edu;hgsc.bcm.edu 37 6 54185464 54185464 + Intron SNP A A G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINAG 27283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54212217 54212217 + Silent SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINAG 27283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54214608 54214608 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINAG 27283 hgsc.bcm.edu;ucsc.edu 37 6 54173613 54173614 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINAGL1 64129 broad.mit.edu 37 1 32051533 32051533 + Intron SNP C A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TINAGL1 64129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32042883 32042883 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINAGL1 64129 broad.mit.edu;ucsc.edu 37 1 32050373 32050373 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TINAGL1 64129 hgsc.bcm.edu;ucsc.edu 37 1 32051109 32051109 + Intron SNP C C G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TINF2 26277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24709106 24709106 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINF2 26277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24709719 24709719 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TINF2 26277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24710922 24710922 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIPARP 25976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156421359 156421359 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TIPRL 261726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168153162 168153162 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TJAP1 93643 broad.mit.edu;ucsc.edu 37 6 43469319 43469319 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TJP1 7082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 30012148 30012148 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TJP1 7082 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 30064288 30064288 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TJP2 9414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 71855060 71855060 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TJP2 9414 hgsc.bcm.edu;ucsc.edu 37 9 71842779 71842780 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TJP2 9414 hgsc.bcm.edu;ucsc.edu 37 9 71867781 71867781 + Silent SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TK1 7083 broad.mit.edu 37 17 76170832 76170832 + 3'UTR SNP C A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TK1 7083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76170949 76170960 + In_Frame_Del DEL CCGGCAGGCTGG CCGGCAGGCTGG - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 CCGGCAGGCTGG CCGGCAGGCTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TK2 7084 hgsc.bcm.edu;ucsc.edu 37 16 66582905 66582905 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TKTL1 8277 broad.mit.edu 37 X 153524197 153524197 + 5'UTR SNP C T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TKTL1 8277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153524232 153524232 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TKTL2 84076 broad.mit.edu;hgsc.bcm.edu 37 4 164394922 164394922 + 5'UTR SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TKTL2 84076 broad.mit.edu;ucsc.edu 37 4 164393649 164393649 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TKTL2 84076 hgsc.bcm.edu;ucsc.edu 37 4 164393620 164393620 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TKTL2 84076 hgsc.bcm.edu;ucsc.edu 37 4 164394547 164394547 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLCD1 116238 broad.mit.edu;hgsc.bcm.edu 37 17 27052361 27052361 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLE1 7088 broad.mit.edu 37 9 84202844 84202844 + Intron SNP T C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLE1 7088 broad.mit.edu 37 9 84202845 84202845 + Intron SNP G C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLE1 7088 broad.mit.edu;hgsc.bcm.edu 37 9 84199110 84199110 + 3'UTR SNP T T C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLE1 7088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 84205823 84205823 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLE3 7090 broad.mit.edu 37 15 70389205 70389206 + 5'UTR INS - G G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLE3 7090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 70351055 70351055 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLE3 7090 hgsc.bcm.edu;ucsc.edu 37 15 70368448 70368448 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLE4 7091 broad.mit.edu 37 9 82340100 82340100 + 3'UTR SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLE6 79816 broad.mit.edu 37 19 2995055 2995055 + 3'UTR DEL C - - rs141348286 bycluster;by1000genomes TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLE6 79816 broad.mit.edu 37 19 2995055 2995055 + 3'UTR DEL C - - rs141348286 bycluster;by1000genomes TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLE6 79816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2987728 2987728 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLK1 9874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 171902831 171902831 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLK2 11011 hgsc.bcm.edu 37 17 60689867 60689867 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLL1 7092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 166929189 166929189 + Silent SNP C C T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLL1 7092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 166986847 166986847 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLL2 7093 broad.mit.edu;hgsc.bcm.edu 37 10 98127809 98127809 + 3'UTR SNP A A C rs41291624 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLL2 7093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98273269 98273269 + Silent SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLL2 7093 broad.mit.edu;ucsc.edu 37 10 98133425 98133425 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLL2 7093 broad.mit.edu;ucsc.edu 37 10 98182331 98182331 + Silent SNP G T T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLN1 7094 broad.mit.edu 37 9 35718904 35718904 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLN1 7094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35698342 35698342 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN1 7094 broad.mit.edu;ucsc.edu 37 9 35704041 35704041 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLN1 7094 hgsc.bcm.edu 37 9 35710663 35710663 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLN2 83660 broad.mit.edu 37 15 63046202 63046202 + Intron SNP A G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62978977 62978977 + Silent SNP A A G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63000819 63000819 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63030443 63030443 + Missense_Mutation SNP A A G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63030474 63030474 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63092888 63092888 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63125718 63125718 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLN2 83660 hgsc.bcm.edu 37 15 63040617 63040617 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR10 81793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38776455 38776455 + Missense_Mutation SNP C C T novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR1 7096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38799865 38799865 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR2 7097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 154625344 154625344 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR2 7097 hgsc.bcm.edu 37 4 154626180 154626188 + In_Frame_Del DEL TGTGAAGAG TGTGAAGAG - novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 TGTGAAGAG TGTGAAGAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR4 7099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 120475390 120475390 + Silent SNP T T C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR4 7099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 120476405 120476405 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR4 7099 hgsc.bcm.edu 37 9 120475463 120475463 + Missense_Mutation SNP C C T rs148638298 unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR5 7100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223285445 223285445 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR5 7100 hgsc.bcm.edu;ucsc.edu 37 1 223284112 223284112 + Silent SNP G G T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR5 7100 hgsc.bcm.edu;ucsc.edu 37 1 223284977 223284977 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR6 10333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38830418 38830418 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR7 51284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12906241 12906241 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR7 51284 hgsc.bcm.edu;ucsc.edu 37 X 12906217 12906217 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR8 51311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12938126 12938126 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR8 51311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12939545 12939545 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TLR8 51311 hgsc.bcm.edu;ucsc.edu 37 X 12937362 12937362 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR8 51311 hgsc.bcm.edu;ucsc.edu 37 X 12937473 12937473 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TLR9 54106 hgsc.bcm.edu;ucsc.edu 37 3 52256548 52256548 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TM2D2 83877 hgsc.bcm.edu;ucsc.edu 37 8 38853913 38853913 + Nonsense_Mutation SNP G G A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM4SF19 116211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196051159 196051159 + Silent SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM4SF19 116211 broad.mit.edu;ucsc.edu 37 3 196053866 196053866 + Nonsense_Mutation SNP C T T novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TM4SF20 79853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228228665 228228665 + Silent SNP A A T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM6SF1 53346 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83791521 83791521 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM6SF1 53346 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83805262 83805262 + Silent SNP T T A novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM6SF1 53346 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83805287 83805287 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM6SF2 53345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19380554 19380554 + Silent SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM6SF2 53345 hgsc.bcm.edu 37 19 19381023 19381023 + Silent SNP G G A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM7SF2 7108 broad.mit.edu 37 11 64879505 64879505 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TM7SF3 51768 broad.mit.edu;ucsc.edu 37 12 27156169 27156169 + Silent SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TM7SF3 51768 hgsc.bcm.edu;ucsc.edu 37 12 27152583 27152583 + Silent SNP T T A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TM7SF4 0 broad.mit.edu;hgsc.bcm.edu 37 8 105361304 105361304 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TM7SF4 0 broad.mit.edu;ucsc.edu 37 8 105361373 105361373 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TM7SF4 0 hgsc.bcm.edu 37 8 105360797 105360797 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TM7SF4 0 hgsc.bcm.edu 37 8 105361354 105361354 + Missense_Mutation SNP G G C rs67114147 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TM9SF1 10548 broad.mit.edu;hgsc.bcm.edu 37 14 24661324 24661324 + Intron SNP T T C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM9SF2 9375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100207857 100207857 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM9SF3 56889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98312748 98312748 + Silent SNP A A T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TM9SF4 9777 broad.mit.edu 37 20 30753553 30753554 + 3'UTR INS - T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TM9SF4 9777 hgsc.bcm.edu;ucsc.edu 37 20 30702047 30702047 + Intron SNP A A C novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMBIM1 64114 broad.mit.edu 37 2 219140112 219140112 + 3'UTR SNP C T T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMBIM1 64114 broad.mit.edu 37 2 219146894 219146894 + Translation_Start_Site SNP G T T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMBIM1 64114 broad.mit.edu 37 2 219146894 219146894 + Translation_Start_Site SNP G T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMBIM1 64114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219140333 219140333 + Silent SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC1 117531 broad.mit.edu 37 9 75451137 75451137 + 3'UTR DEL T - - rs71495343 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMC1 117531 hgsc.bcm.edu 37 9 75369724 75369724 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC1 117531 hgsc.bcm.edu;ucsc.edu 37 9 75309453 75309471 + In_Frame_Del DEL GTTTAGGTGAAGAGGAAGA GTTTAGGTGAAGAGGAAGA - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 GTTTAGGTGAAGAGGAAGA GTTTAGGTGAAGAGGAAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC2 117532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2616597 2616597 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC2 117532 hgsc.bcm.edu;ucsc.edu 37 20 2577820 2577820 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC2 117532 hgsc.bcm.edu;ucsc.edu 37 20 2577832 2577832 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC3 342125 broad.mit.edu 37 15 81633742 81633742 + Silent SNP A G G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMC3 342125 hgsc.bcm.edu;ucsc.edu 37 15 81644159 81644159 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC4 147798 hgsc.bcm.edu 37 19 54675643 54675643 + Missense_Mutation SNP G G A rs77215230 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC5 79838 broad.mit.edu;hgsc.bcm.edu 37 16 19460864 19460864 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC5 79838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19475156 19475156 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC5 79838 hgsc.bcm.edu;ucsc.edu 37 16 19451434 19451434 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC6 11322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76116777 76116777 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC7 79905 hgsc.bcm.edu 37 16 19070743 19070743 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMC8 147138 broad.mit.edu 37 17 76133993 76133993 + Intron SNP A G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMC8 147138 broad.mit.edu;hgsc.bcm.edu 37 17 76137117 76137117 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC8 147138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76134202 76134202 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMC8 147138 hgsc.bcm.edu 37 17 76127732 76127732 + Silent SNP G G A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCC2 9911 broad.mit.edu 37 1 205197541 205197541 + 5'UTR DEL T - - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMCC2 9911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205238192 205238192 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCC3 57458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94975953 94975953 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO1 54499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 165712544 165712544 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO2 127391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40713786 40713786 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO3 55002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114149939 114149939 + Missense_Mutation SNP G G A rs139520979 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO3 55002 hgsc.bcm.edu 37 13 114149923 114149923 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMCO3 55002 hgsc.bcm.edu;ucsc.edu 37 13 114156172 114156173 + Frame_Shift_Ins INS - - CTTCAGGA novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO4 255104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20009748 20009748 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO4 255104 hgsc.bcm.edu;ucsc.edu 37 1 20082231 20082231 + Silent SNP G G A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO6 55374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140024201 140024201 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO7 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68953056 68953056 + Silent SNP C C A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMCO7 0 hgsc.bcm.edu 37 16 68877598 68877598 + Silent SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMCO7 0 hgsc.bcm.edu;ucsc.edu 37 16 68893912 68893912 + Silent SNP A A C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMCO7 0 hgsc.bcm.edu;ucsc.edu 37 16 68964131 68964131 + Intron SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMED2 10959 broad.mit.edu 37 12 124069112 124069114 + 5'UTR DEL GGC - - rs145847735 bycluster;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GGC GGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMED2 10959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124069276 124069276 + Silent SNP G G A novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMED6 146456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69385482 69385482 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMED7-TICAM2 100302736 broad.mit.edu 37 5 114915343 114915344 + 3'UTR DEL CA - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEFF2 23671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192818523 192818523 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM100 55273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53798317 53798317 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM102 284114 broad.mit.edu 37 17 7340786 7340786 + Frame_Shift_Del DEL G - - novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM102 284114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7340067 7340067 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM102 284114 hgsc.bcm.edu 37 17 7339626 7339626 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM102 284114 hgsc.bcm.edu 37 17 7339626 7339626 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM104 54868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72832324 72832324 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM105 284186 hgsc.bcm.edu;ucsc.edu 37 17 79288241 79288241 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM106A 113277 broad.mit.edu 37 17 41370020 41370020 + 3'UTR SNP C T T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM106A 113277 broad.mit.edu 37 17 41370072 41370073 + 3'UTR INS - G G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM106A 113277 hgsc.bcm.edu 37 17 41365129 41365130 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM106A 113277 hgsc.bcm.edu 37 17 41368531 41368531 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM106C 79022 broad.mit.edu;hgsc.bcm.edu 37 12 48358003 48358003 + 5'UTR SNP A A T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM107 84314 broad.mit.edu 37 17 8078990 8078990 + Intron SNP C A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM107 84314 broad.mit.edu;hgsc.bcm.edu 37 17 8076788 8076788 + 3'UTR SNP C C A rs186890613 by1000genomes TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM108 66000 hgsc.bcm.edu 37 3 133099097 133099097 + Missense_Mutation SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM109 79073 hgsc.bcm.edu 37 11 60689310 60689310 + Silent SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM109 79073 hgsc.bcm.edu 37 11 60689459 60689459 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM111 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10005822 10005822 + Silent SNP T T C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM111 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10005828 10005828 + Silent SNP G G A rs113658691 by1000genomes TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM111 0 hgsc.bcm.edu 37 3 10011439 10011439 + Silent SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM117 84216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 44537365 44537365 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM117 84216 hgsc.bcm.edu;ucsc.edu 37 12 44782260 44782260 + Silent SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM121(dist=113884) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106110423 106110423 + IGR SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=239072) 0 hgsc.bcm.edu 37 14 106235611 106235611 + IGR SNP A A T rs11557948 unknown;alternate_allele TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=239780) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106236319 106236319 + IGR SNP A A T novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=315365) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106311904 106311904 + IGR SNP C C T novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=325625) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106322164 106322164 + IGR SNP G G A novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=332893) 0 hgsc.bcm.edu;ucsc.edu 37 14 106329432 106329432 + IGR SNP C C A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=353192) 0 hgsc.bcm.edu 37 14 106349731 106349731 + IGR SNP C C T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=361037) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106357576 106357576 + IGR SNP C C G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=367296) 0 hgsc.bcm.edu 37 14 106363835 106363835 + IGR SNP T T C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=367296) 0 hgsc.bcm.edu 37 14 106363835 106363835 + IGR SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=57591) 0 broad.mit.edu;hgsc.bcm.edu 37 14 106054130 106054130 + IGR SNP G G A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=58011) 0 broad.mit.edu;hgsc.bcm.edu 37 14 106054550 106054550 + IGR SNP C C T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=58042) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106054581 106054581 + IGR SNP C C G novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=94364) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 106090903 106090903 + IGR SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM121(dist=94751) 0 broad.mit.edu;hgsc.bcm.edu 37 14 106091290 106091290 + IGR SNP T T A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM123 114908 broad.mit.edu 37 11 102269328 102269328 + 3'UTR DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM123 114908 broad.mit.edu 37 11 102269328 102269328 + 3'UTR DEL A - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM123 114908 broad.mit.edu 37 11 102269328 102269328 + 3'UTR DEL A - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM123 114908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102272803 102272803 + Missense_Mutation SNP T T C novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM128 85013 broad.mit.edu 37 4 4239697 4239697 + Intron SNP C A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM128 85013 broad.mit.edu 37 4 4239697 4239697 + Intron SNP C A A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM128 85013 broad.mit.edu 37 4 4239697 4239697 + Intron SNP C A A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM128 85013 broad.mit.edu 37 4 4241134 4241134 + Intron DEL C - - rs145487408 bycluster;by1000genomes TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM129 92305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1719303 1719303 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM130 222865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98457932 98457932 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM131 23505 broad.mit.edu 37 2 98375417 98375417 + Missense_Mutation SNP G T T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM131 23505 broad.mit.edu;hgsc.bcm.edu 37 2 98418894 98418894 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM131 23505 hgsc.bcm.edu;ucsc.edu 37 2 98373848 98373848 + Splice_Site SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM131 23505 hgsc.bcm.edu;ucsc.edu 37 2 98412694 98412694 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM131 23505 hgsc.bcm.edu;ucsc.edu 37 2 98429106 98429106 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM131 23505 hgsc.bcm.edu;ucsc.edu 37 2 98543964 98543964 + Intron SNP A A G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132A 54972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60701064 60701064 + Silent SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132B 114795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125834194 125834194 + Silent SNP T T C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132B 114795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 126135244 126135244 + Silent SNP C C T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132B 114795 hgsc.bcm.edu 37 12 126137053 126137053 + Missense_Mutation SNP A A G rs61940805 unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM132C 92293 hgsc.bcm.edu;ucsc.edu 37 12 129180622 129180622 + Silent SNP C C A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132D 121256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129558540 129558540 + Silent SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132D 121256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129559305 129559305 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132D 121256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130184668 130184668 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132D 121256 hgsc.bcm.edu;ucsc.edu 37 12 129559173 129559173 + Silent SNP G G T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM132E 124842 broad.mit.edu 37 17 32965275 32965276 + 3'UTR INS - C C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM132E 124842 broad.mit.edu 37 17 32965276 32965276 + 3'UTR DEL C - - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM132E 124842 broad.mit.edu 37 17 32965285 32965286 + 3'UTR INS - A A rs11080288 bycluster;byhapmap TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM132E 124842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 32953491 32953491 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132E 124842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 32954049 32954049 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM132E 124842 hgsc.bcm.edu 37 17 32961826 32961826 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM133 83935 broad.mit.edu;ucsc.edu 37 11 100863191 100863191 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM136 219902 broad.mit.edu 37 11 120198001 120198001 + Intron SNP A T T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM138 51524 broad.mit.edu 37 11 61135328 61135328 + Intron SNP T C C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM138 51524 broad.mit.edu 37 11 61135582 61135582 + Intron SNP A C C novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM138 51524 hgsc.bcm.edu;ucsc.edu 37 11 61135391 61135391 + RNA SNP T T A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM139 135932 broad.mit.edu 37 7 142984079 142984079 + 3'UTR SNP C T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM140 55281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134849219 134849219 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM143 55260 broad.mit.edu 37 19 48845836 48845836 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM144 55314 broad.mit.edu 37 4 159174811 159174811 + 3'UTR SNP G T T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM144 55314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159138498 159138499 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM144 55314 hgsc.bcm.edu 37 4 159138559 159138560 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM145 284339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42820894 42820894 + Splice_Site SNP T T C novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM145 284339 broad.mit.edu;ucsc.edu 37 19 42821063 42821063 + Missense_Mutation SNP A C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM145 284339 hgsc.bcm.edu;ucsc.edu 37 19 42821885 42821886 + Frame_Shift_Ins INS - - AC novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM146 0 hgsc.bcm.edu 37 19 5727334 5727334 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM146 0 hgsc.bcm.edu;ucsc.edu 37 19 5749189 5749191 + In_Frame_Del DEL ATC ATC - novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 ATC ATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM149 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36230813 36230813 + Silent SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM149 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36231433 36231433 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM14B 81853 broad.mit.edu 37 6 10756854 10756854 + 3'UTR SNP C T T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM14B 81853 broad.mit.edu 37 6 10756854 10756854 + 3'UTR SNP C T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM14B 81853 broad.mit.edu 37 6 10756864 10756864 + 3'UTR DEL A - - novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM14C 51522 broad.mit.edu 37 6 10731090 10731090 + 3'UTR SNP A G G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM150A 129303 broad.mit.edu 37 2 85829235 85829235 + 5'UTR SNP G T T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM150A 129303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85828149 85828149 + Silent SNP G G T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM150A 129303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85828190 85828190 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM151B 441151 broad.mit.edu 37 6 44274838 44274838 + 3'UTR SNP A G G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM151B 441151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44240820 44240820 + Silent SNP C C T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM154 201799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 153564272 153564272 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM154 201799 hgsc.bcm.edu 37 4 153549754 153549754 + Intron SNP C C A rs9684518 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM155 132332 hgsc.bcm.edu;ucsc.edu 37 4 122682726 122682726 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM156 80008 hgsc.bcm.edu 37 4 39000337 39000337 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM159 57146 broad.mit.edu;hgsc.bcm.edu 37 16 21172478 21172478 + 5'UTR SNP C C G novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM161B 153396 broad.mit.edu 37 5 87491918 87491918 + 3'UTR DEL T - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM161B 153396 broad.mit.edu 37 5 87491918 87491918 + 3'UTR DEL T - - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM161B 153396 hgsc.bcm.edu 37 5 87516401 87516401 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM161B 153396 hgsc.bcm.edu 37 5 87516401 87516401 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM164 84187 hgsc.bcm.edu 37 X 109247114 109247114 + Silent SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM165 55858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 56277929 56277929 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM165 55858 hgsc.bcm.edu;ucsc.edu 37 4 56284067 56284067 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM167B 56900 broad.mit.edu;hgsc.bcm.edu 37 1 109635584 109635584 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM168 64418 hgsc.bcm.edu;ucsc.edu 37 7 112412960 112412960 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM169 92691 broad.mit.edu 37 2 216960587 216960587 + 5'UTR SNP G A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM169 92691 broad.mit.edu 37 2 216960605 216960605 + 5'UTR SNP A G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM169 92691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216965265 216965265 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM169 92691 hgsc.bcm.edu;ucsc.edu 37 2 216960807 216960807 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM169 92691 hgsc.bcm.edu;ucsc.edu 37 2 216965089 216965089 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM17 200728 broad.mit.edu 37 2 62729497 62729497 + Intron SNP C G G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM17 200728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 62728554 62728554 + Silent SNP G G T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM17 200728 hgsc.bcm.edu 37 2 62733189 62733189 + Missense_Mutation SNP C C T rs17854454 bycluster;byfrequency;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM17 200728 hgsc.bcm.edu;ucsc.edu 37 2 62728623 62728623 + Splice_Site SNP C C G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM179 388021 hgsc.bcm.edu;ucsc.edu 37 14 105061450 105061450 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM179B 374395 broad.mit.edu;ucsc.edu 37 11 62557433 62557433 + Missense_Mutation SNP A G G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM180 79847 broad.mit.edu 37 10 104235833 104235833 + 3'UTR DEL T - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM180 79847 broad.mit.edu 37 10 104235864 104235864 + 3'UTR DEL A - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM180 79847 broad.mit.edu;ucsc.edu 37 10 104231152 104231152 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM181 57583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 159029391 159029391 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM182 130827 broad.mit.edu 37 2 103378582 103378582 + 5'UTR DEL T - - novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM182 130827 broad.mit.edu;hgsc.bcm.edu 37 2 103380788 103380788 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM182 130827 broad.mit.edu;hgsc.bcm.edu 37 2 103414319 103414319 + Intron SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM182 130827 broad.mit.edu;hgsc.bcm.edu 37 2 103431455 103431455 + 3'UTR SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM183A(dist=20006) 0 broad.mit.edu;hgsc.bcm.edu 37 1 203013203 203013203 + IGR SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM184A 202915 hgsc.bcm.edu 37 7 1586653 1586654 + In_Frame_Ins INS - - GCC rs112463195 bycluster;by1000genomes TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM184A 202915 hgsc.bcm.edu 37 7 1586653 1586654 + In_Frame_Ins INS - - GCC rs112463195 bycluster;by1000genomes TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM184C 55751 broad.mit.edu 37 4 148539066 148539066 + 5'UTR SNP A C C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM184C 55751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148545115 148545115 + Missense_Mutation SNP G G C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM184C 55751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148545244 148545244 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM184C 55751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148555356 148555356 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM184C 55751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148555434 148555434 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM185A 84548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148690436 148690436 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM186 25880 hgsc.bcm.edu 37 16 8889990 8889990 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM187 8269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153247610 153247610 + Missense_Mutation SNP G G T rs139864308 bycluster;byfrequency;by1000genomes TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM189 387521 broad.mit.edu 37 20 48741400 48741400 + 3'UTR DEL A - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM189 387521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 48760154 48760154 + Silent SNP C C T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM194B 100131211 hgsc.bcm.edu;ucsc.edu 37 2 191379270 191379270 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM195 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 15405181 15405181 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM195 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 15433778 15433778 + Silent SNP T T C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM196 256130 hgsc.bcm.edu 37 7 19765295 19765295 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM196 256130 hgsc.bcm.edu;ucsc.edu 37 7 19765340 19765340 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM198 130612 broad.mit.edu 37 2 220412692 220412692 + Frame_Shift_Del DEL C - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM198 130612 broad.mit.edu 37 2 220413932 220413932 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM198 130612 hgsc.bcm.edu 37 2 220414019 220414019 + Silent SNP T T C rs13023533 bycluster;byfrequency;by1000genomes TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM198 130612 hgsc.bcm.edu 37 2 220414019 220414019 + Silent SNP T T C rs13023533 bycluster;byfrequency;by1000genomes TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM198 130612 hgsc.bcm.edu 37 2 220414473 220414473 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM200A 114801 broad.mit.edu;hgsc.bcm.edu 37 6 130761752 130761752 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM200A 114801 hgsc.bcm.edu;ucsc.edu 37 6 130762739 130762739 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM200C 645369 hgsc.bcm.edu 37 18 5891547 5891547 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM20 0 broad.mit.edu 37 10 95661466 95661468 + 3'UTR DEL TTG - - rs141308441 bycluster TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM203 94107 broad.mit.edu;hgsc.bcm.edu 37 9 140099456 140099456 + Missense_Mutation SNP C C A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM205 374882 broad.mit.edu;hgsc.bcm.edu 37 19 11456341 11456341 + 5'UTR SNP T T C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM206 55248 broad.mit.edu 37 1 212538406 212538406 + 3'UTR SNP G C C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM206 55248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212538685 212538685 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM206 55248 hgsc.bcm.edu 37 1 212548582 212548582 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM208 29100 broad.mit.edu 37 16 67261756 67261756 + Silent SNP C T T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM208 29100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67262757 67262757 + Silent SNP T T A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM208 29100 hgsc.bcm.edu;ucsc.edu 37 16 67262337 67262337 + Intron SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM209 84928 broad.mit.edu;hgsc.bcm.edu 37 7 129845266 129845266 + 5'UTR SNP A A T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM213 155006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138487680 138487680 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM214 54867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27256957 27256957 + Silent SNP C C A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM214 54867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27258869 27258869 + Silent SNP C C T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM214 54867 hgsc.bcm.edu;ucsc.edu 37 2 27261347 27261347 + Intron SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM214 54867 hgsc.bcm.edu;ucsc.edu 37 2 27263541 27263541 + Intron SNP T T A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM218 219854 broad.mit.edu 37 11 124972208 124972208 + 5'UTR SNP A G G rs14065 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM222 84065 broad.mit.edu;hgsc.bcm.edu 37 1 27648817 27648817 + Silent SNP C C T novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM2 23670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 74305109 74305109 + Silent SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM2 23670 hgsc.bcm.edu 37 9 74360416 74360416 + Silent SNP A A G novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM2 23670 hgsc.bcm.edu;ucsc.edu 37 9 74315738 74315738 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM223 79064 broad.mit.edu 37 11 62557904 62557904 + 3'UTR DEL T - - rs75388959 unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM225 338661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123753906 123753906 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM229A 730130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123672673 123672673 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM229A 730130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123672679 123672679 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM229A 730130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123672748 123672748 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM229A 730130 broad.mit.edu 37 7 123672832 123672832 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM229B 161145 hgsc.bcm.edu 37 14 67940219 67940219 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM231 79583 broad.mit.edu 37 16 75590097 75590097 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM232 642987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 109940964 109940964 + Silent SNP A A T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM233 387890 broad.mit.edu 37 12 120078664 120078665 + 3'UTR INS - AG AG rs111558498 unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM25 84866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118404209 118404209 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM26 219623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63212753 63212753 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM30A 55754 broad.mit.edu;hgsc.bcm.edu 37 6 75968691 75968691 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM31 203562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102968576 102968576 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM31 203562 hgsc.bcm.edu 37 X 102968789 102968789 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM33 55161 hgsc.bcm.edu 37 4 41941346 41941346 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM37 140738 broad.mit.edu 37 2 120194742 120194742 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM37 140738 broad.mit.edu 37 2 120195182 120195183 + 3'UTR INS - G G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM37 140738 hgsc.bcm.edu 37 2 120194651 120194652 + In_Frame_Ins INS - - GTGTGC rs3217464 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM37 140738 hgsc.bcm.edu 37 2 120194651 120194652 + In_Frame_Ins INS - - GTGTGC rs3217464 bycluster TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM37 140738 hgsc.bcm.edu;ucsc.edu 37 2 120194864 120194864 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM38A 79041 hgsc.bcm.edu 37 19 16793274 16793274 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM38B 55151 broad.mit.edu 37 9 108472692 108472692 + Intron SNP C T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM38B 55151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 108483903 108483903 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM39B 55116 broad.mit.edu 37 1 32557586 32557586 + Missense_Mutation SNP G T T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM39B 55116 hgsc.bcm.edu 37 1 32557363 32557363 + Silent SNP G G C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM41A 90407 hgsc.bcm.edu 37 3 185212513 185212513 + Silent SNP A A G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM44 93109 broad.mit.edu 37 3 194338403 194338403 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM45B 120224 broad.mit.edu;hgsc.bcm.edu 37 11 129728494 129728494 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM45B 120224 hgsc.bcm.edu 37 11 129728512 129728512 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM47 83604 broad.mit.edu 37 X 34648280 34648280 + 3'UTR SNP G A A rs10522027 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM47 83604 hgsc.bcm.edu 37 X 34657472 34657472 + Missense_Mutation SNP C C T rs112608415 unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM47 83604 hgsc.bcm.edu 37 X 34657472 34657472 + Missense_Mutation SNP C C T rs112608415 unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM48 55706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54262374 54262374 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM49 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57915760 57915760 + Splice_Site SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM49 0 hgsc.bcm.edu;ucsc.edu 37 17 57886217 57886217 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM50A 23585 broad.mit.edu 37 1 25687310 25687310 + 3'UTR SNP C T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM50A 23585 broad.mit.edu 37 1 25688537 25688538 + 3'UTR INS - C C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM50B 757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34841149 34841149 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM51 55092 hgsc.bcm.edu 37 1 15546034 15546034 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM53 79639 broad.mit.edu 37 1 45101527 45101527 + 3'UTR SNP A G G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM54 113452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33360935 33360935 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM54 113452 hgsc.bcm.edu 37 1 33360429 33360429 + Missense_Mutation SNP T T A rs147308790 unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM54 113452 hgsc.bcm.edu 37 1 33360433 33360433 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM55A 55529 hgsc.bcm.edu;ucsc.edu 37 8 92008894 92008894 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM55B 90809 broad.mit.edu 37 14 20927414 20927414 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM56 148534 broad.mit.edu 37 1 95658793 95658793 + 3'UTR DEL A - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM57 55219 broad.mit.edu 37 1 25783128 25783128 + Intron SNP A G G novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM59 9528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54506474 54506474 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM59 9528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54509110 54509110 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM59 9528 broad.mit.edu;ucsc.edu 37 1 54509109 54509109 + Silent SNP G A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM59L 25789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18724826 18724826 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM61 199964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55457606 55457606 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM62 80021 hgsc.bcm.edu;ucsc.edu 37 15 43476766 43476766 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM63A 9725 hgsc.bcm.edu 37 1 226037701 226037701 + Silent SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM63B 55362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44107217 44107217 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM63B 55362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44107238 44107238 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM63C 57156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77723017 77723017 + Missense_Mutation SNP C C T rs185516701 by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM64 169200 broad.mit.edu 37 8 91637754 91637754 + 3'UTR DEL A - - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM64 169200 hgsc.bcm.edu 37 8 91657421 91657421 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM66 51669 hgsc.bcm.edu;ucsc.edu 37 8 29931544 29931544 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM67 91147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 94821184 94821184 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM68 137695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56652730 56652730 + Silent SNP T T C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM68 137695 hgsc.bcm.edu;ucsc.edu 37 8 56675226 56675227 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM69 51249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46156752 46156752 + Silent SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM69 51249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46159076 46159076 + Silent SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM70 54968 broad.mit.edu 37 8 74888490 74888490 + 5'UTR SNP C T T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM70 54968 broad.mit.edu 37 8 74894661 74894661 + 3'UTR SNP C A A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM70 54968 hgsc.bcm.edu 37 8 74893388 74893388 + Splice_Site SNP A A G rs183973249 by1000genomes TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM71 137835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 133764200 133764200 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM71 137835 hgsc.bcm.edu 37 8 133740199 133740199 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM74 157753 hgsc.bcm.edu;ucsc.edu 37 8 109796776 109796776 + Silent SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMEM80 283232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 703112 703112 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM81 388730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205053016 205053016 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM82 388595 broad.mit.edu 37 1 16074138 16074138 + 3'UTR SNP G C C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM85 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34522008 34522008 + 3'UTR SNP T T C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM85 0 hgsc.bcm.edu;ucsc.edu 37 15 34520009 34520009 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM86A 144110 broad.mit.edu 37 11 18726190 18726190 + 3'UTR SNP A G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM86A 144110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18722527 18722527 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM86B 255043 broad.mit.edu 37 19 55738223 55738225 + 3'UTR DEL AGC - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 AGC AGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM87A 25963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42512318 42512318 + Silent SNP T T A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM87A 25963 broad.mit.edu;ucsc.edu 37 15 42529668 42529668 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM8A 58986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 425200 425200 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM8A 58986 hgsc.bcm.edu 37 16 422040 422041 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM92 162461 broad.mit.edu;hgsc.bcm.edu 37 17 48356271 48356271 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMEM97 27346 broad.mit.edu 37 17 26653991 26653991 + 3'UTR DEL T - - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM97 27346 broad.mit.edu 37 17 26654811 26654811 + 3'UTR DEL T - - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMEM98 26022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 31260288 31260288 + Silent SNP C C A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMF1 7110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 69073260 69073260 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMIGD1 388364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 28659092 28659092 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMIGD2 126259 broad.mit.edu 37 19 4294619 4294619 + Silent SNP A C C novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMIGD2 126259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4298004 4298004 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMIGD2 126259 hgsc.bcm.edu 37 19 4294602 4294603 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMLHE 55217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154754204 154754204 + Missense_Mutation SNP G G A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMLHE 55217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154754205 154754205 + Silent SNP A A G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD1 7111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100286582 100286582 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD1 7111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100326390 100326390 + Silent SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD1 7111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100331319 100331319 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD1 7111 hgsc.bcm.edu 37 9 100308464 100308464 + Intron SNP T T G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD2 29767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52065996 52065996 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD2 29767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52066002 52066002 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD2 29767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52098676 52098676 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD3 29766 broad.mit.edu 37 15 52213781 52213781 + RNA DEL C - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMOD3 29766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52161517 52161517 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD4 29765 hgsc.bcm.edu;ucsc.edu 37 1 151143053 151143054 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMOD4 29765 hgsc.bcm.edu;ucsc.edu 37 1 151143913 151143913 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPO 7112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 98927778 98927778 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPPE 643853 broad.mit.edu 37 3 33135687 33135687 + Frame_Shift_Del DEL T - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS11A 339967 broad.mit.edu;ucsc.edu 37 4 68780433 68780433 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS11B 132724 broad.mit.edu;hgsc.bcm.edu 37 4 69111338 69111338 + 5'UTR SNP C C G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS11BNL 401136 hgsc.bcm.edu 37 4 69083601 69083601 + Intron SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS11D 9407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68692994 68692994 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS11D 9407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68719845 68719845 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS11D 9407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68725379 68725379 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS11D 9407 broad.mit.edu;ucsc.edu 37 4 68749693 68749693 + 5'UTR SNP C T T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS11E 28983 hgsc.bcm.edu;ucsc.edu 37 4 69340500 69340500 + Intron SNP A A G rs2603187 bycluster TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS11F 389208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68995527 68995527 + Splice_Site SNP C C T rs148740696 unknown;alternate_allele TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS11F 389208 hgsc.bcm.edu 37 4 68930482 68930482 + Silent SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS11F 389208 hgsc.bcm.edu;ucsc.edu 37 4 68939653 68939653 + Splice_Region SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS12 283471 broad.mit.edu 37 12 51281383 51281383 + 3'UTR SNP A C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS12 283471 hgsc.bcm.edu;ucsc.edu 37 12 51252806 51252806 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS13 84000 broad.mit.edu 37 11 117772787 117772788 + 3'UTR INS - CA CA rs138699837 bycluster;by1000genomes TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS13 84000 broad.mit.edu 37 11 117772788 117772789 + 3'UTR DEL CA - - rs138699837 bycluster;by1000genomes TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS13 84000 broad.mit.edu 37 11 117772788 117772793 + 3'UTR DEL CACACA - - rs138699837 bycluster;by1000genomes;alternate_allele TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 CACACA CACACA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS13 84000 broad.mit.edu;ucsc.edu 37 11 117774795 117774795 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS13 84000 hgsc.bcm.edu 37 11 117772955 117772955 + Silent SNP T T C rs73020481 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu 37 21 19642252 19642252 + 3'UTR SNP T T A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu 37 21 19716370 19716370 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19666661 19666661 + Silent SNP A A G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19698767 19698767 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19701513 19701513 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19725219 19725219 + Splice_Site SNP C C A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS2 7113 hgsc.bcm.edu 37 21 42861492 42861492 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS3 64699 broad.mit.edu;hgsc.bcm.edu 37 21 43816224 43816224 + upstream SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS3 64699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 43803192 43803192 + Silent SNP G G A novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS3 64699 hgsc.bcm.edu;ucsc.edu 37 21 43804123 43804130 + Frame_Shift_Del DEL CTAAAGCG CTAAAGCG - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 CTAAAGCG CTAAAGCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS5 80975 hgsc.bcm.edu;ucsc.edu 37 11 113568092 113568103 + In_Frame_Del DEL CTCACTTGCGCT CTCACTTGCGCT - novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 CTCACTTGCGCT CTCACTTGCGCT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMPRSS6 164656 broad.mit.edu 37 22 37480371 37480371 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS6 164656 broad.mit.edu 37 22 37499264 37499264 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMPRSS6 164656 broad.mit.edu;hgsc.bcm.edu 37 22 37462067 37462067 + 3'UTR SNP C C T novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS6 164656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37462221 37462221 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS6 164656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37469600 37469600 + Silent SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS9 360200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2418067 2418067 + Silent SNP C C T novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMPRSS9 360200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2422196 2422196 + Silent SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMSL3 0 broad.mit.edu 37 4 91760207 91760207 + 5'UTR SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMSL3 0 broad.mit.edu 37 4 91760218 91760218 + 5'UTR SNP G A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMTC1 83857 broad.mit.edu;hgsc.bcm.edu 37 12 29709847 29709847 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC1 83857 hgsc.bcm.edu;ucsc.edu 37 12 29786235 29786235 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMTC2 160335 broad.mit.edu;hgsc.bcm.edu 37 12 83290207 83290207 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC2 160335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 83290181 83290181 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC2 160335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 83525988 83525988 + Splice_Site SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC2 160335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 83526102 83526102 + Silent SNP A A G novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC3 160418 broad.mit.edu;hgsc.bcm.edu 37 12 88589406 88589406 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC3 160418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88560118 88560118 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC3 160418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88584363 88584363 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC3 160418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88588684 88588684 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC4 84899 broad.mit.edu 37 13 101257005 101257005 + 3'UTR SNP T A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMTC4 84899 broad.mit.edu 37 13 101257072 101257072 + 3'UTR SNP C A A rs73568772 by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMTC4 84899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 101277820 101277820 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMTC4 84899 hgsc.bcm.edu;ucsc.edu 37 13 101277909 101277909 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMUB2 79089 broad.mit.edu 37 17 42266658 42266658 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TMUB2 79089 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42266747 42266747 + Silent SNP G G A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMUB2 79089 hgsc.bcm.edu 37 17 42265113 42265113 + Splice_Site SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMX2 51075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57505890 57505890 + Frame_Shift_Del DEL T T - novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMX2 51075 hgsc.bcm.edu;ucsc.edu 37 11 57480238 57480238 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMX3 54495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 66348333 66348333 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMX3 54495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 66367641 66367641 + Splice_Site SNP C C A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMX4 56255 hgsc.bcm.edu 37 20 7962927 7962927 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TMX4 56255 hgsc.bcm.edu 37 20 7963240 7963240 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TMX4 56255 hgsc.bcm.edu;ucsc.edu 37 20 7962956 7962956 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNC 3371 broad.mit.edu;hgsc.bcm.edu 37 9 117783425 117783425 + 3'UTR SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117803275 117803275 + Silent SNP G G T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117825304 117825304 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117840239 117840239 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117840320 117840320 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117848654 117848654 + Silent SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNC 3371 hgsc.bcm.edu 37 9 117838696 117838703 + Frame_Shift_Del DEL GTTGGCTC GTTGGCTC - novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 GTTGGCTC GTTGGCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNC 3371 hgsc.bcm.edu;ucsc.edu 37 9 117848578 117848578 + Missense_Mutation SNP C C T rs149285218 by1000genomes TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNF 7124 broad.mit.edu;hgsc.bcm.edu 37 6 31545342 31545342 + 3'UTR SNP C C T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFAIP1 7126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26667402 26667402 + Silent SNP C C T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFAIP1 7126 hgsc.bcm.edu;ucsc.edu 37 17 26669383 26669383 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFAIP2 7127 broad.mit.edu 37 14 103601714 103601714 + 3'UTR SNP A C C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFAIP3 7128 broad.mit.edu 37 6 138204004 138204004 + 3'UTR DEL A - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFAIP3 7128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 138201233 138201233 + Silent SNP C C T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNFAIP6 7130 broad.mit.edu 37 2 152236144 152236144 + 3'UTR SNP T G G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFAIP6 7130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152220485 152220485 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFAIP8 25816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118691785 118691785 + 5'UTR SNP T T A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFRSF10A 8797 hgsc.bcm.edu 37 8 23049492 23049492 + Silent SNP G G T rs145547481 unknown;alternate_allele TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFRSF10B 8795 broad.mit.edu 37 8 22880052 22880052 + 3'UTR SNP T A A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF11B 4982 broad.mit.edu 37 8 119936331 119936331 + 3'UTR DEL T - - rs112977670 unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF11B 4982 broad.mit.edu 37 8 119936331 119936331 + 3'UTR DEL T - - rs112977670 unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF11B 4982 hgsc.bcm.edu;ucsc.edu 37 8 119938824 119938824 + Silent SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFRSF13B 23495 broad.mit.edu 37 17 16842795 16842795 + 3'UTR SNP C T T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF13B 23495 broad.mit.edu 37 17 16844614 16844614 + Intron DEL A - - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF13B 23495 hgsc.bcm.edu;ucsc.edu 37 17 16852092 16852092 + Missense_Mutation SNP C C G novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFRSF14 8764 broad.mit.edu 37 1 2490091 2490091 + Intron SNP C G G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF17 608 broad.mit.edu 37 16 12061912 12061913 + 3'UTR INS - T T rs113542863 bycluster;by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF17 608 broad.mit.edu 37 16 12061912 12061913 + 3'UTR INS - T T rs113542863 bycluster;by1000genomes TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF17 608 hgsc.bcm.edu;ucsc.edu 37 16 12061465 12061465 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFRSF19 55504 hgsc.bcm.edu;ucsc.edu 37 13 24239454 24239454 + Intron SNP T T C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFRSF1A 7132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6439822 6439822 + Silent SNP G G T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFRSF1A 7132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6440021 6440021 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFRSF1A 7132 hgsc.bcm.edu 37 12 6442919 6442919 + Silent SNP G G A rs104895249 unknown;alternate_allele TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFRSF21 27242 broad.mit.edu 37 6 47200300 47200300 + 3'UTR DEL A - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF21 27242 broad.mit.edu 37 6 47200394 47200394 + 3'UTR SNP C A A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFRSF21 27242 hgsc.bcm.edu;ucsc.edu 37 6 47251933 47251933 + Silent SNP G G A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFRSF4 7293 broad.mit.edu;hgsc.bcm.edu 37 1 1149473 1149473 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFRSF9 3604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 7998781 7998781 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFSF10 8743 broad.mit.edu 37 3 172241184 172241185 + 5'UTR DEL AG - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFSF10 8743 hgsc.bcm.edu;ucsc.edu 37 3 172232773 172232773 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFSF11 8600 hgsc.bcm.edu;ucsc.edu 37 13 43155267 43155267 + Silent SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFSF12-TNFSF13 407977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7464289 7464289 + 3'UTR SNP T T G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFSF14 8740 broad.mit.edu 37 19 6665221 6665221 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFSF14 8740 broad.mit.edu 37 19 6669873 6669873 + Missense_Mutation SNP T G G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNFSF15 9966 hgsc.bcm.edu;ucsc.edu 37 9 117552995 117552995 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNFSF8 944 hgsc.bcm.edu 37 9 117692493 117692493 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNFSF9 8744 hgsc.bcm.edu;ucsc.edu 37 19 6534712 6534712 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNIK 23043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170802027 170802027 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNIK 23043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170893117 170893117 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNIK 23043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170945979 170945979 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNIP1 10318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150444657 150444657 + 5'UTR SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNIP1 10318 hgsc.bcm.edu;ucsc.edu 37 5 150422134 150422134 + Silent SNP G G C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNIP3 79931 broad.mit.edu 37 4 122053415 122053415 + 3'UTR DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNK1 8711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7291835 7291835 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNK1 8711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7291994 7291994 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNK1 8711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7291994 7291994 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNK2 10188 broad.mit.edu 37 3 195590410 195590410 + 3'UTR DEL G - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNK2 10188 broad.mit.edu 37 3 195594610 195594610 + Silent SNP C T T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNK2 10188 broad.mit.edu 37 3 195596501 195596502 + Intron INS - AG AG rs71637188 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNKS1BP1 85456 broad.mit.edu 37 11 57088165 57088165 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNKS1BP1 85456 broad.mit.edu 37 11 57089477 57089477 + 5'UTR SNP G T T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57068043 57068043 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57076422 57076422 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57077336 57077336 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57077445 57077445 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57087711 57087711 + Silent SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS1BP1 85456 broad.mit.edu;ucsc.edu 37 11 57076184 57076184 + Missense_Mutation SNP A T T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNKS2 80351 broad.mit.edu 37 10 93622951 93622959 + 3'UTR DEL GTTTTTTCA - - rs144316780 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 GTTTTTTCA GTTTTTTCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNKS2 80351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93604754 93604754 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNKS2 80351 hgsc.bcm.edu;ucsc.edu 37 10 93622703 93622703 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS 8658 broad.mit.edu;hgsc.bcm.edu 37 8 9413533 9413533 + Silent SNP G G T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNKS 8658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 9588524 9588524 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNN 63923 broad.mit.edu;hgsc.bcm.edu 37 1 175046949 175046949 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNN 63923 hgsc.bcm.edu 37 1 175053032 175053032 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNN 63923 hgsc.bcm.edu 37 1 175054573 175054573 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNNC2 7125 hgsc.bcm.edu;ucsc.edu 37 20 44455871 44455871 + Intron SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNNI1 7135 broad.mit.edu 37 1 201398087 201398087 + RNA SNP A T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNNI1 7135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201384351 201384351 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNNI3K 51086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74954920 74954920 + Silent SNP C C G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNNT1 7138 broad.mit.edu 37 19 55645564 55645564 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNNT1 7138 broad.mit.edu;hgsc.bcm.edu 37 19 55645562 55645562 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNNT1 7138 hgsc.bcm.edu 37 19 55656889 55656889 + Intron SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNNT3 7140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1955173 1955173 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNNT3 7140 hgsc.bcm.edu;ucsc.edu 37 11 1947663 1947663 + Intron SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNPO1 3842 broad.mit.edu;hgsc.bcm.edu 37 5 72185719 72185719 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TNPO2 30000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12813644 12813644 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNPO2 30000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12825697 12825697 + Silent SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNPO2 30000 hgsc.bcm.edu;ucsc.edu 37 19 12829966 12829966 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNPO3 23534 broad.mit.edu;ucsc.edu 37 7 128607436 128607436 + Missense_Mutation SNP C A A rs188168905 by1000genomes;alternate_allele TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNR 7143 broad.mit.edu 37 1 175526396 175526396 + Intron DEL C - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNR 7143 broad.mit.edu 37 1 175712567 175712567 + 5'UTR DEL T - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNR 7143 broad.mit.edu;hgsc.bcm.edu 37 1 175375877 175375877 + 5'UTR SNP G G A novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175299227 175299227 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175323627 175323627 + Silent SNP A A T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175348829 175348829 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175360502 175360502 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175365838 175365838 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNR 7143 broad.mit.edu;ucsc.edu 37 1 175355202 175355202 + Silent SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNR 7143 hgsc.bcm.edu 37 1 175334171 175334171 + Silent SNP C C T novel unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNR 7143 hgsc.bcm.edu 37 1 175355248 175355248 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNR 7143 hgsc.bcm.edu 37 1 175355249 175355249 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNR 7143 hgsc.bcm.edu;ucsc.edu 37 1 175293500 175293500 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNR 7143 hgsc.bcm.edu;ucsc.edu 37 1 175372418 175372418 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNRC18 84629 broad.mit.edu 37 7 5347894 5347894 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 broad.mit.edu 37 7 5352305 5352305 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 broad.mit.edu 37 7 5352533 5352533 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 broad.mit.edu 37 7 5352561 5352563 + In_Frame_Del DEL GAG - - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 broad.mit.edu 37 7 5364768 5364768 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 broad.mit.edu 37 7 5427483 5427483 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 broad.mit.edu;hgsc.bcm.edu 37 7 5348898 5348898 + Silent SNP G G A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC18 84629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5391579 5391579 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC18 84629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5391580 5391580 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC18 84629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5396761 5396761 + Silent SNP C C A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC18 84629 broad.mit.edu;ucsc.edu 37 7 5391571 5391571 + Silent SNP C T T rs186010377 by1000genomes TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC18 84629 hgsc.bcm.edu 37 7 5401349 5401349 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNRC18 84629 hgsc.bcm.edu 37 7 5434094 5434094 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNRC6A 27327 broad.mit.edu 37 16 24816853 24816853 + Intron SNP T C C novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6A 27327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24788568 24788568 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC6A 27327 broad.mit.edu;ucsc.edu 37 16 24816069 24816069 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6A 27327 hgsc.bcm.edu 37 16 24805924 24805925 + In_Frame_Ins INS - - CCA novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC6A 27327 hgsc.bcm.edu;ucsc.edu 37 16 24788558 24788558 + Silent SNP T T A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNRC6B 23112 broad.mit.edu 37 22 40662297 40662297 + Missense_Mutation SNP A C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6B 23112 broad.mit.edu 37 22 40719315 40719315 + 3'UTR DEL T - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6B 23112 broad.mit.edu 37 22 40719353 40719353 + 3'UTR SNP G C C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6B 23112 broad.mit.edu 37 22 40724450 40724450 + 3'UTR DEL A - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6B 23112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40662303 40662303 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC6B 23112 hgsc.bcm.edu 37 22 40719130 40719130 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNRC6C 57690 broad.mit.edu 37 17 76073823 76073823 + Intron DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNRC6C 57690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76046332 76046332 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNRC6C 57690 hgsc.bcm.edu 37 17 76047332 76047332 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNRC6C 57690 hgsc.bcm.edu 37 17 76083029 76083029 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNS1 7145 broad.mit.edu 37 2 218668979 218668980 + 3'UTR INS - TCTC TCTC rs71403015 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNS1 7145 broad.mit.edu 37 2 218668980 218668981 + 3'UTR DEL TC - - rs71403015 unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNS1 7145 broad.mit.edu 37 2 218669158 218669158 + 3'UTR SNP C A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNS1 7145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 218713105 218713105 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNS1 7145 broad.mit.edu;ucsc.edu 37 2 218713396 218713396 + Missense_Mutation SNP C G G novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNS1 7145 hgsc.bcm.edu 37 2 218683139 218683139 + Missense_Mutation SNP G G A rs34291329 bycluster;byfrequency;by1000genomes TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNS1 7145 hgsc.bcm.edu 37 2 218686541 218686541 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNS1 7145 hgsc.bcm.edu;ucsc.edu 37 2 218672842 218672842 + Intron SNP A A G novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNS1 7145 hgsc.bcm.edu;ucsc.edu 37 2 218673368 218673368 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNS3 64759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 47384598 47384598 + Silent SNP G G T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNS3 64759 broad.mit.edu;ucsc.edu 37 7 47384579 47384579 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNS4 84951 hgsc.bcm.edu 37 17 38652467 38652467 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNS4 84951 hgsc.bcm.edu;ucsc.edu 37 17 38643651 38643651 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TNXB 7148 broad.mit.edu 37 6 32064926 32064927 + Frame_Shift_Del DEL CA - - rs150957138 by1000genomes TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TNXB 7148 broad.mit.edu;hgsc.bcm.edu 37 6 32047063 32047063 + Silent SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TNXB 7148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32065169 32065169 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOB1 10140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48940954 48940954 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOB1 10140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48941286 48941286 + Silent SNP T T C novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOB1 10140 hgsc.bcm.edu;ucsc.edu 37 17 48940796 48940797 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOB2 10766 broad.mit.edu 37 22 41831483 41831484 + 3'UTR DEL AC - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOB2 10766 broad.mit.edu 37 22 41832248 41832248 + 3'UTR SNP T G G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOB2 10766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41832382 41832382 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOB2 10766 hgsc.bcm.edu 37 22 41832415 41832415 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOB2 10766 hgsc.bcm.edu;ucsc.edu 37 22 41832766 41832766 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOE1 114034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45808092 45808092 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOM1 10043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 35719146 35719146 + Silent SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOM1L1 10040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53014035 53014035 + Silent SNP T T C novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOM1L1 10040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53027421 53027421 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOM1L2 146691 broad.mit.edu 37 17 17761164 17761164 + Intron DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOM1L2 146691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17810845 17810845 + Missense_Mutation SNP T T A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOM1L2 146691 broad.mit.edu;ucsc.edu 37 17 17769632 17769632 + Silent SNP G T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOM1L2 146691 hgsc.bcm.edu 37 17 17772713 17772713 + Silent SNP G G A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOM1L2 146691 hgsc.bcm.edu;ucsc.edu 37 17 17810782 17810782 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOMM20 9804 hgsc.bcm.edu;ucsc.edu 37 1 235283224 235283224 + Intron SNP A A T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOMM34 10953 hgsc.bcm.edu;ucsc.edu 37 20 43572209 43572210 + In_Frame_Ins INS - - TTA novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOMM40 10452 broad.mit.edu 37 19 45406477 45406477 + 3'UTR SNP A C C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOMM40L 84134 broad.mit.edu 37 1 161196254 161196254 + 5'UTR SNP G T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOMM40L 84134 broad.mit.edu 37 1 161198936 161198936 + 3'UTR SNP C T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOMM40L 84134 hgsc.bcm.edu 37 1 161198049 161198049 + Silent SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TONSL 4796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145666223 145666223 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TONSL 4796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145666428 145666428 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP1 7150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39741521 39741521 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP1 7150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39744972 39744972 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP1 7150 hgsc.bcm.edu;ucsc.edu 37 20 39728844 39728844 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOP1MT 116447 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144411529 144411529 + Silent SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP1MT 116447 hgsc.bcm.edu 37 8 144403383 144403383 + Silent SNP C C A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP2A 7153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38545832 38545832 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP2A 7153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38574074 38574074 + 5'UTR SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP2A 7153 hgsc.bcm.edu;ucsc.edu 37 17 38556798 38556798 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOP2A 7153 hgsc.bcm.edu;ucsc.edu 37 17 38557157 38557157 + Missense_Mutation SNP C C T rs192926120 by1000genomes TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP2B 7155 hgsc.bcm.edu 37 3 25678779 25678779 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOP3A 7156 broad.mit.edu 37 17 18196163 18196163 + Silent SNP G A A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOP3A 7156 broad.mit.edu;ucsc.edu 37 17 18188466 18188466 + Nonsense_Mutation SNP T A A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOP3A 7156 hgsc.bcm.edu;ucsc.edu 37 17 18178133 18178133 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP3A 7156 hgsc.bcm.edu;ucsc.edu 37 17 18205997 18205997 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOP3B 8940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 22317229 22317229 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOP3B 8940 hgsc.bcm.edu 37 22 22318352 22318352 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOPBP1 11073 broad.mit.edu;hgsc.bcm.edu 37 3 133329915 133329915 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOPBP1 11073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 133342007 133342007 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOPBP1 11073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 133362056 133362056 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOPBP1 11073 hgsc.bcm.edu;ucsc.edu 37 3 133347540 133347540 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOPORS 10210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32543675 32543675 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOR1AIP1 26092 hgsc.bcm.edu;ucsc.edu 37 1 179853818 179853818 + Splice_Region SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOR1AIP1 26092 hgsc.bcm.edu;ucsc.edu 37 1 179869288 179869288 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOR1AIP2 163590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 179833916 179833916 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOR2A 27433 broad.mit.edu 37 9 130494163 130494163 + 3'UTR SNP T G G novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOR2A 27433 broad.mit.edu 37 9 130494778 130494778 + Intron DEL G - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOR2A 27433 hgsc.bcm.edu 37 9 130495610 130495610 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOR3A 64222 broad.mit.edu 37 1 179064540 179064540 + 3'UTR DEL T - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOR3A 64222 broad.mit.edu 37 1 179064560 179064561 + 3'UTR INS - AGAT AGAT novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOR3A 64222 broad.mit.edu 37 1 179064560 179064561 + 3'UTR INS - AGAT AGAT novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOR3A 64222 broad.mit.edu;hgsc.bcm.edu 37 1 179057120 179057120 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOR3A 64222 broad.mit.edu;hgsc.bcm.edu 37 1 179057211 179057211 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOX2 84969 broad.mit.edu;hgsc.bcm.edu 37 20 42680130 42680130 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOX2 84969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 42574588 42574588 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOX3 27324 hgsc.bcm.edu 37 16 52472812 52472812 + 3'UTR SNP C C A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TOX3 27324 hgsc.bcm.edu 37 16 52478206 52478206 + Silent SNP C C T rs3743796 bycluster;byfrequency;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOX3 27324 hgsc.bcm.edu 37 16 52478215 52478215 + Silent SNP C C T rs3743797 bycluster;byfrequency;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TOX4 9878 broad.mit.edu 37 14 21966604 21966604 + 3'UTR SNP T C C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TOX 9760 broad.mit.edu 37 8 60031708 60031708 + 5'UTR DEL A - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7577498 7577498 + Splice_Site SNP C C A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7577097 7577097 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7577124 7577124 + Missense_Mutation SNP C C T rs121912657 unknown;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7579396 7579396 + Silent SNP G G A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TP53 7157 broad.mit.edu;ucsc.edu 37 17 7578211 7578211 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx TP53 7157 hgsc.bcm.edu 37 17 7578239 7578239 + Nonsense_Mutation SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID TP53 7157 hgsc.bcm.edu;ucsc.edu 37 17 7573974 7573974 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM SOLID TP53 7157 hgsc.bcm.edu;ucsc.edu 37 17 7577559 7577559 + Missense_Mutation SNP G G C rs28934573 bycluster;alternate_allele TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TP53 7157 hgsc.bcm.edu;ucsc.edu 37 17 7577581 7577581 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP53AIP1 63970 hgsc.bcm.edu 37 11 128807594 128807594 + Silent SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP53BP1 7158 broad.mit.edu 37 15 43699486 43699486 + 3'UTR SNP G T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP53BP1 7158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43748161 43748161 + Nonsense_Mutation SNP G G C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP1 7158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43748191 43748191 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP1 7158 hgsc.bcm.edu 37 15 43714119 43714119 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP53BP1 7158 hgsc.bcm.edu 37 15 43738686 43738686 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP53BP1 7158 hgsc.bcm.edu 37 15 43785262 43785262 + Intron SNP G G T novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP53BP1 7158 hgsc.bcm.edu;ucsc.edu 37 15 43712740 43712741 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP1 7158 hgsc.bcm.edu;ucsc.edu 37 15 43724668 43724668 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP2 7159 broad.mit.edu 37 1 223990159 223990159 + Intron SNP G C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP53BP2 7159 broad.mit.edu 37 1 223990160 223990160 + Intron SNP C T T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP53BP2 7159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223983623 223983623 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP2 7159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223983853 223983853 + Silent SNP T T A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP2 7159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223983955 223983955 + Silent SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP2 7159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223994599 223994599 + Silent SNP T T C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53BP2 7159 hgsc.bcm.edu 37 1 223986157 223986157 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP53I11 9537 broad.mit.edu 37 11 44955672 44955672 + 3'UTR DEL A - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP53I13 90313 broad.mit.edu;hgsc.bcm.edu 37 17 27896080 27896080 + Silent SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53I3 9540 broad.mit.edu 37 2 24307267 24307267 + Intron SNP A G G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307066 24307066 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307098 24307098 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307099 24307099 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307100 24307100 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53INP1 94241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95952145 95952145 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53TG5 27296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44004124 44004124 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP53TG5 27296 hgsc.bcm.edu 37 20 44002597 44002597 + Missense_Mutation SNP G G A rs2231628 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP63 8626 broad.mit.edu 37 3 189590896 189590896 + Intron SNP T C C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP63 8626 broad.mit.edu 37 3 189590948 189590948 + Intron SNP T A A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP63 8626 broad.mit.edu;hgsc.bcm.edu 37 3 189586483 189586483 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TP63 8626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 189586470 189586470 + Missense_Mutation SNP C C T rs147148566 unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP63 8626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 189604291 189604291 + Silent SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TP63 8626 broad.mit.edu;ucsc.edu 37 3 189608582 189608582 + Silent SNP T C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP73 7161 broad.mit.edu 37 1 3607454 3607454 + Intron DEL C - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TP73 7161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3599704 3599704 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TP73 7161 hgsc.bcm.edu 37 1 3624323 3624323 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TP73 7161 hgsc.bcm.edu 37 1 3645988 3645989 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPBG 7162 broad.mit.edu 37 6 83074572 83074572 + 5'UTR DEL T - - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPCN1 53373 broad.mit.edu;ucsc.edu 37 12 113727990 113727990 + Silent SNP C A A rs150639944 unknown;alternate_allele TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPCN2 219931 broad.mit.edu 37 11 68853399 68853399 + Splice_Site SNP G A A rs145113932 unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPD52L1 7164 broad.mit.edu 37 6 125584215 125584215 + 3'UTR SNP C A A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPD52L1 7164 hgsc.bcm.edu;ucsc.edu 37 6 125569531 125569531 + Splice_Site SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPH1 7166 broad.mit.edu 37 11 18042321 18042322 + 3'UTR INS - A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPH1 7166 broad.mit.edu 37 11 18042322 18042322 + 3'UTR DEL A - - novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPH1 7166 broad.mit.edu 37 11 18042322 18042322 + 3'UTR DEL A - - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPH1 7166 broad.mit.edu 37 11 18042322 18042322 + 3'UTR DEL A - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPH1 7166 broad.mit.edu;ucsc.edu 37 11 18045491 18045491 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPH1 7166 hgsc.bcm.edu;ucsc.edu 37 11 18050851 18050851 + Silent SNP G G A rs150277860 bycluster;byfrequency;by1000genomes TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPH2 121278 hgsc.bcm.edu;ucsc.edu 37 12 72425132 72425132 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPI1 7167 broad.mit.edu;hgsc.bcm.edu 37 12 6979622 6979622 + RNA SNP C C T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPI1 7167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6978057 6978057 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPK1 27010 hgsc.bcm.edu 37 7 144532676 144532676 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPK1(dist=170087) 0 broad.mit.edu;hgsc.bcm.edu 37 7 144703233 144703233 + IGR SNP A A T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPM1 7168 broad.mit.edu 37 15 63354948 63354948 + Intron SNP C T T novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPM2 7169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35684288 35684288 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPO 7173 broad.mit.edu 37 2 1546455 1546455 + 3'UTR SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPO 7173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1440117 1440117 + Missense_Mutation SNP C C A rs138509145 unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPO 7173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1499872 1499872 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPO 7173 hgsc.bcm.edu 37 2 1476630 1476630 + Intron SNP A A T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPO 7173 hgsc.bcm.edu 37 2 1479544 1479544 + Intron SNP C C T rs56659108 bycluster;by1000genomes TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPO 7173 hgsc.bcm.edu 37 2 1488398 1488398 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPO 7173 hgsc.bcm.edu 37 2 1500518 1500518 + Silent SNP C C T novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPP1 1200 hgsc.bcm.edu 37 11 6638044 6638044 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPP2 7174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103275378 103275378 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPP2 7174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103275383 103275383 + Silent SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPPP 11076 broad.mit.edu;hgsc.bcm.edu 37 5 678108 678108 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPPP3 51673 broad.mit.edu 37 16 67425086 67425086 + 5'UTR SNP T C C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPPP3 51673 hgsc.bcm.edu;ucsc.edu 37 16 67424948 67424948 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPR 7175 broad.mit.edu 37 1 186281887 186281887 + 3'UTR SNP C A A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPR 7175 broad.mit.edu 37 1 186282774 186282774 + 3'UTR SNP T C C novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPR 7175 broad.mit.edu 37 1 186344191 186344191 + 5'UTR DEL G - - novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186286645 186286645 + Silent SNP G G T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186302399 186302399 + Silent SNP T T C novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186303510 186303510 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186310211 186310211 + Silent SNP T T G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186324584 186324584 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186327744 186327744 + Silent SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TPRG1L 127262 broad.mit.edu 37 1 3545224 3545224 + 3'UTR SNP G C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPRG1L 127262 broad.mit.edu;hgsc.bcm.edu 37 1 3545080 3545080 + Silent SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPRG1L 127262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3545158 3545158 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPRN 286262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140093554 140093554 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPRX1 284355 hgsc.bcm.edu 37 19 48305658 48305658 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPSAB1 7177 broad.mit.edu;hgsc.bcm.edu 37 16 1291647 1291647 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPSB2 64499 hgsc.bcm.edu 37 16 1278744 1278744 + Missense_Mutation SNP C C T rs62012862 bycluster;byfrequency;by1000genomes TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPSD1 23430 hgsc.bcm.edu 37 16 1306921 1306921 + Silent SNP G G A rs78324915 bycluster;byfrequency TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPSD1 23430 hgsc.bcm.edu 37 16 1306971 1306971 + Missense_Mutation SNP A A G rs72775466 bycluster;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPSD1 23430 hgsc.bcm.edu 37 16 1306971 1306971 + Missense_Mutation SNP A A G rs72775466 bycluster;by1000genomes TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPSD1 23430 hgsc.bcm.edu 37 16 1306971 1306971 + Missense_Mutation SNP A A G rs72775466 bycluster;by1000genomes TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPSD1 23430 hgsc.bcm.edu 37 16 1306971 1306971 + Missense_Mutation SNP A A G rs72775466 bycluster;by1000genomes TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPSD1 23430 hgsc.bcm.edu 37 16 1306973 1306973 + Missense_Mutation SNP A A G rs79313952 unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TPSD1 23430 hgsc.bcm.edu 37 16 1306973 1306973 + Missense_Mutation SNP A A G rs79313952 unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPSD1 23430 hgsc.bcm.edu 37 16 1306973 1306973 + Missense_Mutation SNP A A G rs79313952 unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPSD1 23430 hgsc.bcm.edu 37 16 1307050 1307050 + Silent SNP C C T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPST1 8460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 65705680 65705680 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPST1 8460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 65705728 65705728 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPT1 7178 broad.mit.edu 37 13 45911319 45911319 + 3'UTR SNP A T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPT1 7178 broad.mit.edu 37 13 45911320 45911320 + 3'UTR SNP A T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPT1 7178 broad.mit.edu 37 13 45914820 45914820 + Intron SNP C A A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPT1 7178 broad.mit.edu;hgsc.bcm.edu 37 13 45914269 45914269 + Silent SNP A A G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPTE2 93492 broad.mit.edu 37 13 20077377 20077377 + Translation_Start_Site SNP G A A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE2 93492 broad.mit.edu;hgsc.bcm.edu 37 13 19999143 19999143 + Nonsense_Mutation SNP G G C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPTE2 93492 broad.mit.edu;hgsc.bcm.edu 37 13 20024477 20024477 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPTE2 93492 broad.mit.edu;hgsc.bcm.edu 37 13 20025322 20025322 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPTE2 93492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20039633 20039633 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TPTE2P1 646405 broad.mit.edu 37 13 25507452 25507452 + 3'UTR SNP G A A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE2P3 220115 broad.mit.edu 37 13 53151275 53151275 + RNA DEL C - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE 7179 broad.mit.edu 37 21 10906858 10906858 + 3'UTR SNP T G G novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE 7179 broad.mit.edu 37 21 10906858 10906858 + 3'UTR SNP T G G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE 7179 broad.mit.edu 37 21 10906858 10906858 + 3'UTR SNP T G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE 7179 broad.mit.edu 37 21 10906858 10906858 + 3'UTR SNP T G G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE 7179 broad.mit.edu 37 21 11012923 11012923 + RNA SNP T C C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPTE 7179 broad.mit.edu 37 21 11014987 11014987 + RNA SNP A G G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TPX2 22974 broad.mit.edu;ucsc.edu 37 20 30365398 30365398 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRA2A 29896 broad.mit.edu 37 7 23544599 23544599 + 3'UTR DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRA2A 29896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23547080 23547080 + Silent SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRA2A 29896 hgsc.bcm.edu;ucsc.edu 37 7 23545398 23545398 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRA2A 29896 hgsc.bcm.edu;ucsc.edu 37 7 23545447 23545447 + Intron SNP A A T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRA2B 6434 broad.mit.edu 37 3 185643007 185643007 + Intron DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRA2B 6434 broad.mit.edu;ucsc.edu 37 3 185643314 185643314 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRADD 8717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67190505 67190505 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF3 7187 hgsc.bcm.edu 37 14 103357741 103357741 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAF3IP1 26146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239233980 239233980 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF3IP1 26146 hgsc.bcm.edu;ucsc.edu 37 2 239256078 239256078 + Intron SNP G G C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF3IP2 10758 broad.mit.edu 37 6 111880376 111880376 + 3'UTR DEL T - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAF3IP2 10758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111912795 111912796 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF3IP2 10758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111913024 111913024 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF3IP3 80342 broad.mit.edu 37 1 209931939 209931939 + Intron DEL G - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAF4 9618 hgsc.bcm.edu;ucsc.edu 37 17 27075315 27075315 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAF5 7188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 211542827 211542827 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF5 7188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 211545849 211545849 + Silent SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF5 7188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 211545865 211545865 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF5 7188 hgsc.bcm.edu 37 1 211545632 211545632 + Missense_Mutation SNP T T A rs78225734 unknown;alternate_allele TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAF6 7189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 36514141 36514141 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF7 84231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2220688 2220688 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAF7 84231 broad.mit.edu;ucsc.edu 37 16 2225568 2225568 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAFD1 10906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112572550 112572550 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAFD1 10906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112580008 112580008 + Silent SNP A A G novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAFD1 10906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112586091 112586091 + Missense_Mutation SNP G G A rs142954248 byfrequency;alternate_allele TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAK1 22906 broad.mit.edu;ucsc.edu 37 3 42251562 42251562 + Intron SNP A G G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAM1 23471 broad.mit.edu 37 8 71520608 71520609 + 5'Flank INS - A A rs111278931 unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAM1 23471 broad.mit.edu 37 8 71520608 71520609 + 5'Flank INS - A A rs111278931 unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAM1 23471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 71508498 71508498 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAM1L1 133022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 118005505 118005505 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAM1L1 133022 broad.mit.edu;ucsc.edu 37 4 118005673 118005673 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAM2 9697 broad.mit.edu 37 6 52365325 52365326 + 3'UTR DEL TG - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAM2 9697 broad.mit.edu 37 6 52367753 52367754 + 3'UTR INS - G G novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRANK1 9881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 36872739 36872739 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRANK1 9881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 36899166 36899166 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRANK1 9881 hgsc.bcm.edu;ucsc.edu 37 3 36871105 36871108 + Frame_Shift_Del DEL CTGA CTGA - novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 CTGA CTGA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRANK1 9881 hgsc.bcm.edu;ucsc.edu 37 3 36872707 36872707 + Silent SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAP1 10131 broad.mit.edu 37 16 3713671 3713671 + Intron SNP G C C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAP1 10131 broad.mit.edu;hgsc.bcm.edu 37 16 3727664 3727664 + Intron SNP G G C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAP1 10131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3726076 3726076 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAP1 10131 hgsc.bcm.edu 37 16 3729714 3729714 + Splice_Region SNP G G A rs61753379 bycluster;byfrequency;by1000genomes TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAPPC10 7109 broad.mit.edu 37 21 45526076 45526076 + 3'UTR DEL C - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAPPC10 7109 broad.mit.edu;ucsc.edu 37 21 45513966 45513966 + Missense_Mutation SNP T C C rs142768361 unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAPPC10 7109 broad.mit.edu;ucsc.edu 37 21 45522670 45522670 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAPPC10 7109 hgsc.bcm.edu 37 21 45523389 45523390 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAPPC10 7109 hgsc.bcm.edu;ucsc.edu 37 21 45502925 45502925 + Silent SNP G G A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAPPC1 58485 broad.mit.edu 37 17 7835215 7835215 + 5'UTR SNP C T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAPPC2 6399 broad.mit.edu;hgsc.bcm.edu 37 X 13738010 13738010 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC2L 51693 hgsc.bcm.edu;ucsc.edu 37 16 88927311 88927311 + Intron SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRAPPC4 51399 broad.mit.edu 37 11 118891137 118891139 + Intron DEL TTC - - rs139812120 bycluster;by1000genomes TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAPPC4 51399 broad.mit.edu 37 11 118891140 118891140 + Intron DEL T - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRAPPC6A 79090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45666460 45666460 + Missense_Mutation SNP G G A rs146982912 unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC8 22878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29410858 29410858 + Silent SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC8 22878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29511372 29511372 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC8 22878 hgsc.bcm.edu;ucsc.edu 37 18 29444658 29444658 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC9 83696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141310714 141310714 + Splice_Site SNP C C T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC9 83696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141415691 141415691 + Silent SNP A A G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAPPC9 83696 hgsc.bcm.edu 37 8 141013958 141013958 + Intron SNP T T C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAT1 50852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 108572551 108572551 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRAT1 50852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 108572578 108572578 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRBV11-2 28581 hgsc.bcm.edu 37 7 142197983 142197983 + NCSD SNP G G A novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV11-2 28581 hgsc.bcm.edu;ucsc.edu 37 7 142197782 142197782 + NCSD SNP T T A novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV11-2 28581 hgsc.bcm.edu;ucsc.edu 37 7 142197782 142197782 + NCSD SNP T T A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV30 28557 hgsc.bcm.edu 37 7 142508701 142508701 + NCSD SNP T T A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV30 28557 hgsc.bcm.edu 37 7 142508701 142508701 + NCSD SNP T T A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV30 28557 hgsc.bcm.edu;ucsc.edu 37 7 142510404 142510404 + NCSD SNP C C T rs361461 bycluster;byfrequency;by1000genomes TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV3-1 28619 hgsc.bcm.edu 37 7 142008408 142008408 + 5'Promoter SNP T T G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV3-1 28619 hgsc.bcm.edu 37 7 142008593 142008593 + NCSD SNP T T C novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV5-4 28611 hgsc.bcm.edu 37 7 142168501 142168501 + NCSD SNP A A C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV5-6 28609 hgsc.bcm.edu 37 7 142131858 142131858 + NCSD SNP C C A novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV5-6 28609 hgsc.bcm.edu 37 7 142131858 142131858 + NCSD SNP C C A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV5-6 28609 hgsc.bcm.edu 37 7 142131868 142131868 + NCSD SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028167 142028167 + NCSD SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028320 142028320 + NCSD SNP A A C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028533 142028533 + NCSD SNP C C A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028538 142028538 + NCSD SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028538 142028538 + NCSD SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028540 142028540 + NCSD SNP G G A novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu 37 7 142028542 142028542 + NCSD SNP G G T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-1 28606 hgsc.bcm.edu;ucsc.edu 37 7 142028151 142028151 + NCSD SNP A A G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-5 28602 hgsc.bcm.edu 37 7 142180770 142180770 + NCSD SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-6 28601 hgsc.bcm.edu 37 7 142162287 142162287 + NCSD SNP T T C novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV6-6 28601 hgsc.bcm.edu 37 7 142162287 142162287 + NCSD SNP T T C novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247494 142247494 + NCSD SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247497 142247497 + NCSD SNP G G C novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247533 142247533 + NCSD SNP C C G novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247533 142247533 + NCSD SNP C C G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247567 142247567 + NCSD SNP A A G novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247567 142247567 + NCSD SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247571 142247571 + NCSD SNP A A G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-3 28595 hgsc.bcm.edu 37 7 142247571 142247571 + NCSD SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-8 28590 hgsc.bcm.edu 37 7 142099563 142099563 + NCSD SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV7-8 28590 hgsc.bcm.edu 37 7 142099601 142099601 + NCSD SNP A A G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRBV9 28586 hgsc.bcm.edu 37 7 142240005 142240005 + NCSD SNP A A C novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRDMT1 1787 broad.mit.edu 37 10 17195305 17195305 + Intron DEL G - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRDMT1 1787 broad.mit.edu 37 10 17195591 17195591 + Silent SNP T C C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRDMT1 1787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17195548 17195548 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRDN 10345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 123545248 123545248 + Silent SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRDN 10345 hgsc.bcm.edu 37 6 123539746 123539746 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRDN 10345 hgsc.bcm.edu 37 6 123581753 123581753 + Splice_Region SNP T T C novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRDN 10345 hgsc.bcm.edu 37 6 123586431 123586431 + Intron SNP A A G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRDN 10345 hgsc.bcm.edu;ucsc.edu 37 6 123539746 123539746 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TREH 11181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118531943 118531943 + Silent SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREH 11181 hgsc.bcm.edu 37 11 118529044 118529045 + Frame_Shift_Ins INS - - G rs11448549 bycluster;by1000genomes TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREH 11181 hgsc.bcm.edu 37 11 118529044 118529045 + Frame_Shift_Ins INS - - G rs11448549 bycluster;by1000genomes TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREH 11181 hgsc.bcm.edu;ucsc.edu 37 11 118531934 118531934 + Silent SNP G G C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TREM1 54210 broad.mit.edu 37 6 41243725 41243725 + 3'UTR SNP G C C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TREM2 54209 hgsc.bcm.edu;ucsc.edu 37 6 41126749 41126749 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREML1 340205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41117371 41117371 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREML2 79865 hgsc.bcm.edu;ucsc.edu 37 6 41162231 41162231 + Silent SNP C C T novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREML4 285852 hgsc.bcm.edu;ucsc.edu 37 6 41196691 41196691 + Frame_Shift_Del DEL G G - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRERF1 55809 broad.mit.edu 37 6 42195938 42195939 + 3'UTR INS - T T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRERF1 55809 broad.mit.edu 37 6 42195939 42195939 + 3'UTR DEL T - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRERF1 55809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42232448 42232448 + Silent SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TREX1 11277 broad.mit.edu;hgsc.bcm.edu 37 3 48508682 48508682 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRH 7200 broad.mit.edu 37 3 129696118 129696118 + 3'UTR SNP C T T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRHDE 29953 broad.mit.edu 37 12 73057100 73057100 + 3'UTR DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRHDE 29953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 73012774 73012774 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRHDE 29953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 73056887 73056887 + Missense_Mutation SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRHDE 29953 broad.mit.edu;ucsc.edu 37 12 72956769 72956769 + Missense_Mutation SNP T A A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRHDE 29953 hgsc.bcm.edu 37 12 73056937 73056937 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRHR 7201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110131432 110131432 + Silent SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRHR 7201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110131518 110131518 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRHR 7201 hgsc.bcm.edu 37 8 110100374 110100374 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIAP1 51499 broad.mit.edu 37 12 120882569 120882569 + 3'UTR SNP C A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIB1 10221 broad.mit.edu 37 8 126448767 126448767 + 3'UTR SNP A T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIB1 10221 hgsc.bcm.edu 37 8 126448323 126448323 + Silent SNP T T C novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIB2 28951 broad.mit.edu 37 2 12877501 12877502 + Intron INS - A A rs5829384 bycluster;by1000genomes TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIB3 57761 broad.mit.edu 37 20 377225 377225 + Frame_Shift_Del DEL C - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIL 9865 hgsc.bcm.edu 37 7 28997498 28997498 + Frame_Shift_Del DEL C C - rs146025122 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIL 9865 hgsc.bcm.edu;ucsc.edu 37 7 28997373 28997373 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM10 10107 hgsc.bcm.edu 37 6 30126177 30126177 + Missense_Mutation SNP G G T rs61735038 bycluster;alternate_allele TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM11 81559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228582654 228582654 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM16 10626 broad.mit.edu 37 17 15475193 15475193 + 3'UTR DEL A - - rs141156730 bycluster;by1000genomes TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM16 10626 broad.mit.edu 37 17 15498178 15498178 + Silent SNP C T T novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM16 10626 broad.mit.edu 37 17 15554772 15554772 + Missense_Mutation SNP A G G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM16 10626 hgsc.bcm.edu 37 17 15539426 15539426 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM16 10626 hgsc.bcm.edu 37 17 15539426 15539426 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM21 6737 broad.mit.edu 37 11 4406233 4406233 + 3'UTR DEL A - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM21 6737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4411235 4411235 + Silent SNP G G A novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM21 6737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4411299 4411299 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM22 10346 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5727831 5727831 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM22 10346 hgsc.bcm.edu;ucsc.edu 37 11 5717667 5717667 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM2 23321 broad.mit.edu 37 4 154256423 154256424 + 3'UTR INS - A A rs113002194 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM2 23321 broad.mit.edu;hgsc.bcm.edu 37 4 154216562 154216562 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM2 23321 hgsc.bcm.edu;ucsc.edu 37 4 154197264 154197264 + Silent SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM23 373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64892965 64892965 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM23 373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64907630 64907630 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM24 8805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138265317 138265317 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM24 8805 hgsc.bcm.edu;ucsc.edu 37 7 138269684 138269684 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM25 7706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 54985850 54985850 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM25 7706 broad.mit.edu;ucsc.edu 37 17 54981679 54981679 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM28 10155 broad.mit.edu 37 19 59060112 59060112 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM28 10155 broad.mit.edu 37 19 59061999 59062000 + 3'UTR INS - G G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM28 10155 broad.mit.edu 37 19 59061999 59062000 + 3'UTR INS - G G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM28 10155 broad.mit.edu 37 19 59062005 59062006 + 3'UTR INS - GGAG GGAG novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM28 10155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 59057138 59057138 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM28 10155 hgsc.bcm.edu 37 19 59060881 59060881 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM29 23650 hgsc.bcm.edu 37 11 119996484 119996484 + Silent SNP C C G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM29 23650 hgsc.bcm.edu 37 11 119996570 119996570 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM3 10612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6479378 6479378 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM3 10612 hgsc.bcm.edu 37 11 6477381 6477381 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM32 22954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119460981 119460981 + Silent SNP T T C novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM33 51592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114967253 114967253 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRIM33 51592 hgsc.bcm.edu 37 1 114940230 114940230 + 3'UTR SNP T T G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM33 51592 hgsc.bcm.edu 37 1 114940555 114940555 + Splice_Region SNP A A T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM33 51592 hgsc.bcm.edu;ucsc.edu 37 1 114948266 114948267 + Frame_Shift_Ins INS - - T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM34 53840 hgsc.bcm.edu 37 11 5653647 5653647 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM34 53840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5655129 5655129 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM35 23087 broad.mit.edu 37 8 27143442 27143443 + 3'UTR INS - A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM35 23087 broad.mit.edu 37 8 27162288 27162288 + Intron DEL G - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM36 55521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 114499350 114499350 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRIM36 55521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 114513529 114513529 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM37 4591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57079057 57079057 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM37 4591 hgsc.bcm.edu 37 17 57181741 57181741 + Silent SNP A A G novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM37 4591 hgsc.bcm.edu;ucsc.edu 37 17 57078981 57078981 + Silent SNP G G A novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM39 56658 broad.mit.edu;hgsc.bcm.edu 37 6 30308093 30308093 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM39-RPP21 202658 hgsc.bcm.edu 37 6 30313340 30313340 + Silent SNP G G C rs6986 bycluster;byfrequency TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM41 90933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180651530 180651530 + Silent SNP T T A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM41 90933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180651556 180651556 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM41 90933 hgsc.bcm.edu;ucsc.edu 37 5 180661917 180661917 + Intron SNP T T A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM42 287015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 140401925 140401925 + Silent SNP C C T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRIM42 287015 hgsc.bcm.edu;ucsc.edu 37 3 140407023 140407023 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID TRIM43 129868 broad.mit.edu 37 2 96265407 96265408 + 3'UTR INS - T T rs148808901 unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM43 129868 hgsc.bcm.edu;ucsc.edu 37 2 96260870 96260870 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM45 80263 broad.mit.edu 37 1 117661045 117661045 + Missense_Mutation SNP C T T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM45 80263 hgsc.bcm.edu 37 1 117660996 117660996 + Silent SNP C C T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM46 80128 broad.mit.edu 37 1 155148781 155148781 + Intron DEL G - - novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM46 80128 hgsc.bcm.edu 37 1 155150596 155150597 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM48 79097 broad.mit.edu 37 11 55038375 55038375 + 3'UTR SNP T C C rs3213870 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM4 89122 broad.mit.edu 37 7 99499621 99499621 + Intron SNP C G G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM50 135892 broad.mit.edu 37 7 72732707 72732707 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM55 84675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67047249 67047249 + Silent SNP C C A rs151067178 unknown;alternate_allele TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM55 84675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67064733 67064733 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM56 81844 hgsc.bcm.edu 37 7 100731748 100731748 + Silent SNP T T G rs61730718 byfrequency;by1000genomes TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM58 25893 hgsc.bcm.edu 37 1 248039262 248039262 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM58 25893 hgsc.bcm.edu 37 1 248039771 248039771 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM5 85363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5687233 5687233 + Silent SNP T T C novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM5 85363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5699642 5699642 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM59 286827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 160156326 160156326 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM60(dist=17741) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 165980637 165980637 + IGR SNP T T G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM6 117854 broad.mit.edu 37 11 5625935 5625935 + Intron SNP C A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM6 117854 broad.mit.edu 37 11 5626471 5626471 + Intron SNP C G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM6 117854 broad.mit.edu;hgsc.bcm.edu 37 11 5618060 5618060 + 5'UTR SNP T T G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM6 117854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5624933 5624933 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM6 117854 hgsc.bcm.edu 37 11 5632213 5632213 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM6 117854 hgsc.bcm.edu;ucsc.edu 37 11 5624941 5624943 + In_Frame_Del DEL GGA GGA - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM62 55223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33612870 33612870 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM62 55223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33612891 33612891 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM63 84676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26385106 26385106 + Missense_Mutation SNP A A C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM63 84676 hgsc.bcm.edu;ucsc.edu 37 1 26378345 26378345 + 3'UTR SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM64 120146 hgsc.bcm.edu 37 11 89706921 89706921 + Missense_Mutation SNP A A G rs4108238 bycluster TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM64 120146 hgsc.bcm.edu 37 11 89706921 89706921 + Missense_Mutation SNP A A G rs4108238 bycluster TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM65 201292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73888859 73888859 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM66 9866 broad.mit.edu 37 11 8662083 8662083 + Silent SNP T G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM67 440730 broad.mit.edu 37 1 231298765 231298765 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM6-TRIM34 445372 broad.mit.edu 37 11 5617916 5617916 + 5'UTR SNP G C C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM71 131405 broad.mit.edu 37 3 32859529 32859529 + 5'UTR SNP C T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM71 131405 broad.mit.edu 37 3 32933360 32933360 + 3'UTR SNP C T T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM71 131405 broad.mit.edu 37 3 32933360 32933360 + 3'UTR SNP C T T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM71 131405 broad.mit.edu 37 3 32933360 32933360 + 3'UTR SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM71 131405 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 32932071 32932071 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM71 131405 hgsc.bcm.edu 37 3 32933366 32933366 + 3'UTR SNP T T C rs62253761 unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM71 131405 hgsc.bcm.edu 37 3 32933370 32933370 + 3'UTR SNP C C T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM73 375593 hgsc.bcm.edu 37 7 75033015 75033015 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIM7 81786 broad.mit.edu 37 5 180622113 180622113 + 3'UTR SNP C T T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM78P 117852 broad.mit.edu;hgsc.bcm.edu 37 11 5686705 5686705 + RNA SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIM8 81603 broad.mit.edu 37 10 104417608 104417609 + 3'UTR INS - T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIM8 81603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104404879 104404879 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIML2 205860 hgsc.bcm.edu 37 4 189026066 189026066 + Silent SNP C C T novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIO 7204 broad.mit.edu 37 5 14508563 14508563 + 3'UTR SNP A C C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIO 7204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14485224 14485224 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIO 7204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14497119 14497119 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIO 7204 hgsc.bcm.edu;ucsc.edu 37 5 14364826 14364826 + Silent SNP T T A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID TRIOBP 11078 broad.mit.edu;hgsc.bcm.edu 37 22 38097437 38097437 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIOBP 11078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38119680 38119680 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIOBP 11078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38130449 38130449 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIOBP 11078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38151617 38151617 + Nonsense_Mutation SNP G G T rs185078175 by1000genomes;alternate_allele TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIOBP 11078 hgsc.bcm.edu;ucsc.edu 37 22 38109337 38109337 + Silent SNP C C T novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIOBP 11078 hgsc.bcm.edu;ucsc.edu 37 22 38134696 38134696 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP10 9322 hgsc.bcm.edu 37 19 6744909 6744909 + Silent SNP C C T rs62125119 bycluster;byfrequency;by1000genomes TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP10 9322 hgsc.bcm.edu;ucsc.edu 37 19 6744588 6744588 + Silent SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP10 9322 hgsc.bcm.edu;ucsc.edu 37 19 6750048 6750048 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP11 9321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 92470128 92470128 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP11 9321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 92470129 92470129 + Silent SNP C C T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP11 9321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 92499570 92499570 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP11 9321 hgsc.bcm.edu 37 14 92436049 92436049 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP11 9321 hgsc.bcm.edu 37 14 92466309 92466309 + Intron SNP T T G rs141961177 by1000genomes;alternate_allele TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP11 9321 hgsc.bcm.edu 37 14 92469812 92469812 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP12 9320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 230642131 230642131 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP12 9320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 230675664 230675665 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP12 9320 broad.mit.edu;ucsc.edu 37 2 230650536 230650536 + Silent SNP C A A rs189366062 by1000genomes;alternate_allele TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIP12 9320 hgsc.bcm.edu 37 2 230675716 230675716 + Nonsense_Mutation SNP G G A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP12 9320 hgsc.bcm.edu;ucsc.edu 37 2 230695456 230695456 + Intron SNP C C G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP13 9319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 916051 916051 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP13 9319 hgsc.bcm.edu;ucsc.edu 37 5 908099 908099 + Intron SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRIP13 9319 hgsc.bcm.edu;ucsc.edu 37 5 916029 916029 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIP4 9325 hgsc.bcm.edu;ucsc.edu 37 15 64717797 64717797 + Silent SNP T T C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIT1 54802 broad.mit.edu 37 1 40307167 40307167 + 3'UTR DEL A - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIT1 54802 broad.mit.edu 37 1 40307167 40307167 + 3'UTR DEL A - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIT1 54802 broad.mit.edu 37 1 40307167 40307167 + 3'UTR DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIT1 54802 broad.mit.edu 37 1 40307167 40307167 + 3'UTR DEL A - - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRIT1 54802 hgsc.bcm.edu;ucsc.edu 37 1 40313333 40313333 + Splice_Site SNP C C A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRIT1 54802 hgsc.bcm.edu;ucsc.edu 37 1 40323055 40323055 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRMT11 60487 hgsc.bcm.edu 37 6 126361391 126361391 + downstream SNP T T C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRMT12 55039 broad.mit.edu 37 8 125464604 125464604 + 3'UTR SNP C T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRMT2B 79979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100297051 100297051 + Silent SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRMT2B 79979 hgsc.bcm.edu;ucsc.edu 37 X 100265618 100265618 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRMT5 57570 broad.mit.edu 37 14 61439184 61439185 + 3'UTR INS - GGC GGC novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRMT61B 55006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29073074 29073074 + Silent SNP T T C novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRMT61B 55006 hgsc.bcm.edu 37 2 29093128 29093128 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRMT6 51605 broad.mit.edu;ucsc.edu 37 20 5924213 5924213 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRO 7216 broad.mit.edu;hgsc.bcm.edu 37 X 54957820 54957820 + 3'UTR SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRO 7216 hgsc.bcm.edu 37 X 54949288 54949289 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRO 7216 hgsc.bcm.edu 37 X 54950147 54950147 + Silent SNP G G C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRO 7216 hgsc.bcm.edu 37 X 54953023 54953023 + Silent SNP C C A novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRO 7216 hgsc.bcm.edu 37 X 54957276 54957276 + Silent SNP T T A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRO 7216 hgsc.bcm.edu 37 X 54957276 54957276 + Silent SNP T T A novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRO 7216 hgsc.bcm.edu 37 X 54957281 54957281 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TROVE2 6738 broad.mit.edu 37 1 193029177 193029177 + Intron SNP C T T novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPA1 8989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 72975792 72975792 + Silent SNP A A C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC1 7220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142509938 142509938 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC3 7222 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 122853762 122853762 + Silent SNP G G A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC4 7223 broad.mit.edu 37 13 38210914 38210914 + 3'UTR SNP A T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPC4 7223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38266299 38266299 + Silent SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC4 7223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38357212 38357212 + Missense_Mutation SNP C C T rs140628205 unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC4 7223 broad.mit.edu;ucsc.edu 37 13 38320157 38320157 + Silent SNP G T T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPC4 7223 hgsc.bcm.edu;ucsc.edu 37 13 38266223 38266223 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPC4AP 26133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33595391 33595391 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC4AP 26133 broad.mit.edu;ucsc.edu 37 20 33596526 33596526 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPC5 7224 broad.mit.edu 37 X 111325621 111325622 + 5'UTR DEL GA - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPC5 7224 hgsc.bcm.edu 37 X 111090368 111090368 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPC7 57113 broad.mit.edu 37 5 135561876 135561879 + Frame_Shift_Del DEL CTTC - - novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 CTTC CTTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPC7 57113 broad.mit.edu;hgsc.bcm.edu 37 5 135692564 135692564 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC7 57113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135561036 135561036 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPC7 57113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135692925 135692925 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM1 4308 broad.mit.edu 37 15 31362150 31362150 + Intron SNP A G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPM1 4308 hgsc.bcm.edu 37 15 31294459 31294459 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM1 4308 hgsc.bcm.edu 37 15 31295002 31295002 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM1 4308 hgsc.bcm.edu 37 15 31318395 31318395 + Silent SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM1 4308 hgsc.bcm.edu;ucsc.edu 37 15 31355418 31355418 + Silent SNP G G A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM2 7226 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45859019 45859019 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM2 7226 hgsc.bcm.edu 37 21 45798894 45798894 + Silent SNP C C A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM2 7226 hgsc.bcm.edu 37 21 45798894 45798894 + Silent SNP C C A novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM3 80036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73477850 73477850 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM3 80036 hgsc.bcm.edu;ucsc.edu 37 9 73150983 73150984 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM5 29850 broad.mit.edu 37 11 2426046 2426046 + 3'UTR SNP T C C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPM5 29850 hgsc.bcm.edu;ucsc.edu 37 11 2439023 2439023 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM6 140803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77416960 77416960 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM6 140803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77417087 77417087 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM6 140803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77435329 77435329 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM6 140803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77442693 77442693 + Splice_Site SNP C C T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM6 140803 hgsc.bcm.edu 37 9 77436728 77436728 + Silent SNP C C A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPM7 54822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50867287 50867287 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM7 54822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50891464 50891464 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRPM7 54822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50891477 50891477 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPM7 54822 hgsc.bcm.edu;ucsc.edu 37 15 50899483 50899483 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID TRPS1 7227 broad.mit.edu 37 8 116635942 116635942 + Intron SNP C T T rs2721939 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPV1 7442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3486632 3486632 + Silent SNP C C T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPV3 162514 hgsc.bcm.edu 37 17 3447866 3447866 + Splice_Region SNP G G A novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPV4 59341 broad.mit.edu;hgsc.bcm.edu 37 12 110226511 110226511 + Silent SNP G G A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPV4 59341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110240804 110240804 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPV4 59341 hgsc.bcm.edu 37 12 110226512 110226512 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPV5 56302 broad.mit.edu 37 7 142622569 142622569 + Intron SNP C T T novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPV5 56302 broad.mit.edu;hgsc.bcm.edu 37 7 142626641 142626641 + Silent SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPV5 56302 hgsc.bcm.edu;ucsc.edu 37 7 142609708 142609708 + Frame_Shift_Del DEL G G - novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRPV5 56302 hgsc.bcm.edu;ucsc.edu 37 7 142609797 142609797 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPV6 55503 broad.mit.edu 37 7 142575085 142575085 + Intron SNP G C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPV6 55503 broad.mit.edu 37 7 142575239 142575239 + Intron SNP A T T rs4987654 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPV6 55503 broad.mit.edu;ucsc.edu 37 7 142572835 142572835 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRPV6 55503 hgsc.bcm.edu 37 7 142571254 142571254 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPV6 55503 hgsc.bcm.edu 37 7 142583152 142583152 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRPV6 55503 hgsc.bcm.edu;ucsc.edu 37 7 142575416 142575416 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRRAP 8295 broad.mit.edu 37 7 98574329 98574329 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRRAP 8295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98507681 98507681 + Silent SNP T T C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRRAP 8295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98547298 98547298 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRRAP 8295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98601971 98601971 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TRUB1 142940 broad.mit.edu 37 10 116698112 116698112 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRUB2 26995 broad.mit.edu 37 9 131083994 131083994 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRUB2 26995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131077879 131077879 + Silent SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRY6 0 broad.mit.edu 37 7 142481271 142481271 + Silent SNP A C C novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRY6 0 broad.mit.edu;ucsc.edu 37 7 142481278 142481278 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TRY6(dist=16475) 0 broad.mit.edu;hgsc.bcm.edu 37 7 142498874 142498874 + IGR SNP G G T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRY6(dist=16530) 0 broad.mit.edu;hgsc.bcm.edu 37 7 142498929 142498929 + IGR SNP T T A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TRYX3 0 hgsc.bcm.edu 37 7 141952104 141952104 + Silent SNP A A T novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSC1 7248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135797252 135797252 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID TSC1 7248 hgsc.bcm.edu;ucsc.edu 37 9 135782693 135782693 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSC22D1 8848 broad.mit.edu 37 13 45008837 45008837 + Silent SNP A G G novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSC22D1 8848 broad.mit.edu 37 13 45008837 45008837 + Silent SNP A G G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSC22D1 8848 hgsc.bcm.edu 37 13 45008837 45008838 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSC22D4 81628 broad.mit.edu;ucsc.edu 37 7 100065183 100065183 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSC2 7249 broad.mit.edu 37 16 2131631 2131631 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSC2 7249 broad.mit.edu;hgsc.bcm.edu 37 16 2132493 2132493 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TSC2 7249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2134519 2134519 + Silent SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TSC2 7249 hgsc.bcm.edu 37 16 2126068 2126068 + Splice_Site SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSC2 7249 hgsc.bcm.edu 37 16 2126070 2126070 + Missense_Mutation SNP T T A rs45463498 bycluster;alternate_allele TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSC2 7249 hgsc.bcm.edu;ucsc.edu 37 16 2112006 2112006 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSEN15 116461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 184023905 184023905 + Silent SNP C C A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSEN2 80746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 12544895 12544895 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSEN2 80746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 12545142 12545142 + Silent SNP C C T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSEN34 79042 hgsc.bcm.edu;ucsc.edu 37 19 54695606 54695607 + In_Frame_Ins INS - - CTT novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSEN54 283989 broad.mit.edu 37 17 73518055 73518055 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSEN54 283989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73519837 73519837 + Silent SNP C C G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSFM 10102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58190297 58190297 + Silent SNP G G A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSGA10 80705 broad.mit.edu;hgsc.bcm.edu 37 2 99725301 99725301 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSGA10 80705 hgsc.bcm.edu 37 2 99634660 99634660 + Splice_Region SNP C C T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSGA10IP 254187 broad.mit.edu 37 11 65715209 65715209 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSGA10IP 254187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65714961 65714961 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSGA10IP 254187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65715544 65715544 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSGA10IP 254187 hgsc.bcm.edu;ucsc.edu 37 11 65715562 65715562 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSGA14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 130042593 130042593 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSGA14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 130044447 130044447 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSGA14 0 hgsc.bcm.edu;ucsc.edu 37 7 130056770 130056770 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSHZ1 10194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72998494 72998494 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ1 10194 hgsc.bcm.edu;ucsc.edu 37 18 72998919 72998919 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSHZ1 10194 hgsc.bcm.edu;ucsc.edu 37 18 73000294 73000294 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSHZ2 128553 broad.mit.edu;ucsc.edu 37 20 51589805 51589805 + 5'UTR SNP C T T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSHZ2 128553 hgsc.bcm.edu 37 20 51870958 51870958 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSHZ2 128553 hgsc.bcm.edu 37 20 51872581 51872581 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSHZ2 128553 hgsc.bcm.edu;ucsc.edu 37 20 51870779 51870779 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu 37 19 31768041 31768041 + Silent SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu 37 19 31768802 31768802 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu 37 19 31770507 31770507 + Silent SNP G G A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 31767620 31767620 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 31769985 31769985 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 31769986 31769986 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSHZ3 57616 hgsc.bcm.edu 37 19 31770083 31770083 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSHZ3 57616 hgsc.bcm.edu;ucsc.edu 37 19 31770448 31770448 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSIX 9383 broad.mit.edu;hgsc.bcm.edu 37 X 73040547 73040547 + RNA SNP A A G novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSKS 60385 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50266419 50266419 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSLP 85480 broad.mit.edu 37 5 110405787 110405787 + 5'Flank DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSLP 85480 broad.mit.edu 37 5 110409085 110409086 + Intron DEL CT - - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSLP 85480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 110407687 110407687 + Silent SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSNARE1 203062 broad.mit.edu 37 8 143425602 143425602 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSNARE1 203062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143310906 143310906 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSNARE1 203062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143412303 143412303 + Silent SNP G G A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSNAXIP1 55815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67859889 67859889 + Missense_Mutation SNP A A T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSNAXIP1 55815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67859890 67859890 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSNAXIP1 55815 hgsc.bcm.edu 37 16 67861501 67861501 + Intron SNP T T C rs34693072 bycluster;byfrequency;by1000genomes TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN1 10103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46646810 46646810 + Missense_Mutation SNP A A G rs184135661 by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN11 441631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 31136075 31136075 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN14 81619 broad.mit.edu 37 10 82279270 82279271 + 3'UTR INS - TTTT TTTT rs5786459 unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPAN17 26262 broad.mit.edu;hgsc.bcm.edu 37 5 176084597 176084597 + Silent SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN17 26262 hgsc.bcm.edu 37 5 176083768 176083768 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN17 26262 hgsc.bcm.edu 37 5 176084585 176084585 + Silent SNP G G A rs150851795 unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN19 144448 broad.mit.edu 37 12 85423547 85423547 + Frame_Shift_Del DEL C - - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPAN19 144448 broad.mit.edu 37 12 85423550 85423550 + Frame_Shift_Del DEL A - - rs59822389 unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPAN19 144448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 85421761 85421761 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN19 144448 broad.mit.edu;ucsc.edu 37 12 85421790 85421790 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPAN19 144448 hgsc.bcm.edu;ucsc.edu 37 12 85421765 85421765 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN2 10100 broad.mit.edu;hgsc.bcm.edu 37 1 115593075 115593075 + 3'UTR SNP A A G novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN31 6302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58140428 58140428 + Silent SNP G G C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN32 10077 broad.mit.edu;hgsc.bcm.edu 37 11 2323364 2323364 + 5'UTR SNP G G C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN32 10077 hgsc.bcm.edu;ucsc.edu 37 11 2329985 2329985 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN33 340348 hgsc.bcm.edu 37 7 128802362 128802362 + Silent SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN5 10098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99397581 99397581 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN5 10098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99407929 99407929 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN6 7105 broad.mit.edu 37 X 99890219 99890219 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPAN6 7105 broad.mit.edu;hgsc.bcm.edu 37 X 99890220 99890220 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN8 7103 hgsc.bcm.edu 37 12 71519097 71519097 + 3'UTR SNP T T A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN8 7103 hgsc.bcm.edu 37 12 71519097 71519097 + 3'UTR SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPAN8 7103 hgsc.bcm.edu 37 12 71526584 71526584 + Silent SNP G G A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN9 10867 hgsc.bcm.edu;ucsc.edu 37 12 3310442 3310442 + Intron SNP T T A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPAN9 10867 hgsc.bcm.edu;ucsc.edu 37 12 3388212 3388212 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPY1 7258 broad.mit.edu 37 Y 9307257 9307258 + 3'UTR INS - T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPY3 728137 broad.mit.edu 37 Y 9366667 9366672 + In_Frame_Del DEL GAAGAT - - novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 GAAGAT GAAGAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPYL1 7259 hgsc.bcm.edu;ucsc.edu 37 6 116599803 116599804 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPYL1 7259 hgsc.bcm.edu;ucsc.edu 37 6 116600312 116600312 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSPYL1 7259 hgsc.bcm.edu;ucsc.edu 37 6 116600703 116600703 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPYL2 64061 broad.mit.edu;hgsc.bcm.edu 37 X 53113886 53113886 + Intron SNP G G T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPYL2 64061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53115408 53115408 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPYL6 388951 broad.mit.edu 37 2 54481859 54481859 + 3'UTR DEL A - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSPYL6 388951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54482422 54482422 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPYL6 388951 hgsc.bcm.edu 37 2 54482704 54482709 + In_Frame_Del DEL GGGCCC GGGCCC - rs141694932 bycluster;by1000genomes TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GGGCCC GGGCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSPYL6 388951 hgsc.bcm.edu 37 2 54483083 54483083 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSR1 55720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2238674 2238674 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSR1 55720 hgsc.bcm.edu;ucsc.edu 37 17 2238608 2238608 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TSSC1 7260 broad.mit.edu 37 2 3193089 3193089 + 3'UTR SNP A T T novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSSC1 7260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3217939 3217939 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSSC1 7260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3217940 3217940 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSSK3 81629 broad.mit.edu 37 1 32828550 32828550 + Intron SNP G C C rs139565977 by1000genomes;alternate_allele TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TSSK4 283629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24675911 24675911 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSSK4 283629 hgsc.bcm.edu 37 14 24677344 24677346 + In_Frame_Del DEL ACG ACG - rs34067514 bycluster;byfrequency;by1000genomes TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 ACG ACG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TSSK6 83983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19625999 19625999 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TST 7263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37414210 37414210 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK1 84630 broad.mit.edu;hgsc.bcm.edu 37 6 43237449 43237449 + Intron SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK1 84630 broad.mit.edu;hgsc.bcm.edu 37 6 43252048 43252048 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK1 84630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43230690 43230690 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK1 84630 hgsc.bcm.edu 37 6 43221356 43221356 + Silent SNP G G T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK1 84630 hgsc.bcm.edu 37 6 43251671 43251671 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTBK1 84630 hgsc.bcm.edu 37 6 43251671 43251671 + Missense_Mutation SNP A T T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTBK2 146057 broad.mit.edu;hgsc.bcm.edu 37 15 43093327 43093327 + Intron SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK2 146057 broad.mit.edu;hgsc.bcm.edu 37 15 43102877 43102877 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK2 146057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43109262 43109262 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK2 146057 hgsc.bcm.edu 37 15 43038015 43038032 + In_Frame_Del DEL GGCTTACTCTTCCCTTGG GGCTTACTCTTCCCTTGG - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 GGCTTACTCTTCCCTTGG GGCTTACTCTTCCCTTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTBK2 146057 hgsc.bcm.edu 37 15 43067428 43067428 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC12 54970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 113194723 113194723 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC12 54970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 113230094 113230094 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC12 54970 broad.mit.edu;ucsc.edu 37 11 113205696 113205696 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC13 79573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 231076263 231076263 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC13 79573 hgsc.bcm.edu 37 1 231075129 231075129 + Splice_Region SNP C C G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC14 151613 broad.mit.edu 37 3 180325654 180325654 + Intron SNP A G G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC14 151613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 180322346 180322346 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC14 151613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 180322347 180322347 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC15 0 broad.mit.edu;hgsc.bcm.edu 37 2 3392356 3392356 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3391616 3391616 + Silent SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC16 158248 broad.mit.edu 37 9 130486668 130486668 + Intron SNP G T T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC1 7265 broad.mit.edu;hgsc.bcm.edu 37 5 159437519 159437519 + 5'UTR SNP C C G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC1 7265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 159437682 159437682 + Silent SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC17 55761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 43429097 43429097 + Silent SNP A A G novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC17 55761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 43469635 43469635 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC17 55761 hgsc.bcm.edu 37 11 43427495 43427495 + Silent SNP A A C novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC18 118491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75095189 75095189 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC19 54902 broad.mit.edu 37 17 15930613 15930613 + Intron SNP T G G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC21A 199223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39179047 39179047 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC21B 79809 broad.mit.edu 37 2 166785603 166785603 + Intron SNP C G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC21B 79809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166731270 166731270 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC21B 79809 hgsc.bcm.edu 37 2 166770162 166770162 + Splice_Region SNP A A T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC21B 79809 hgsc.bcm.edu 37 2 166810159 166810159 + Intron SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC21B 79809 hgsc.bcm.edu;ucsc.edu 37 2 166788344 166788344 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC22 55001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55251692 55251692 + Silent SNP T T C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC23L 153657 hgsc.bcm.edu 37 5 34867107 34867107 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC23L 153657 hgsc.bcm.edu;ucsc.edu 37 5 34880314 34880314 + Silent SNP T T C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC24 164118 broad.mit.edu;hgsc.bcm.edu 37 1 156553240 156553240 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC24 164118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156552877 156552877 + Silent SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC24 164118 hgsc.bcm.edu 37 1 156553232 156553232 + Frame_Shift_Del DEL C C - rs140853435 by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC25 83538 hgsc.bcm.edu 37 17 40100657 40100657 + Intron SNP C C A novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC25 83538 hgsc.bcm.edu 37 17 40100665 40100665 + Intron SNP C C T novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC26 79989 broad.mit.edu 37 7 138853315 138853316 + Intron INS - A A rs112942380 unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC26 79989 broad.mit.edu;hgsc.bcm.edu 37 7 138822685 138822685 + Silent SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC26 79989 hgsc.bcm.edu;ucsc.edu 37 7 138845757 138845757 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC28 23331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 28504358 28504358 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC28 23331 hgsc.bcm.edu;ucsc.edu 37 22 28559427 28559427 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC28 23331 hgsc.bcm.edu;ucsc.edu 37 22 28693689 28693689 + Silent SNP G G T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC29 83894 broad.mit.edu;hgsc.bcm.edu 37 4 147830304 147830304 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC29 83894 hgsc.bcm.edu 37 4 147724797 147724797 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC30A 92104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178482340 178482340 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC30B 150737 broad.mit.edu 37 2 178415367 178415367 + 3'UTR DEL T - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC30B 150737 broad.mit.edu 37 2 178415367 178415367 + 3'UTR DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC30B 150737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178415573 178415573 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC32 130502 broad.mit.edu 37 2 20101646 20101646 + 5'UTR SNP T A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC32 130502 broad.mit.edu 37 2 20101652 20101652 + 5'UTR SNP T A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC32 130502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20101521 20101521 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC33 23548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40716581 40716581 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC33 23548 hgsc.bcm.edu 37 5 40716407 40716407 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC3 7267 broad.mit.edu 37 21 38460511 38460517 + Frame_Shift_Del DEL GTATATG - - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 GTATATG GTATATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC3 7267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38539860 38539860 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC37 9652 broad.mit.edu;hgsc.bcm.edu 37 5 94803695 94803695 + Splice_Site SNP T T C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC37 9652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 94860289 94860289 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC37 9652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 94876456 94876456 + Silent SNP T T G novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC37 9652 hgsc.bcm.edu;ucsc.edu 37 5 94852697 94852697 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC38 55020 hgsc.bcm.edu 37 22 46682976 46682976 + Missense_Mutation SNP C C T rs55653327 bycluster;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTC39B 158219 broad.mit.edu 37 9 15250045 15250045 + Intron DEL A - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC39B 158219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 15211317 15211317 + Silent SNP C C T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC39C 125488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21694593 21694593 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC7A 57217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 47221561 47221561 + Silent SNP C C A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC7B 145567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 91110479 91110479 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC7B 145567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 91123577 91123577 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC7B 145567 hgsc.bcm.edu;ucsc.edu 37 14 91155923 91155923 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC8 123016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 89307274 89307274 + Splice_Site SNP T T C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTC9B 148014 broad.mit.edu 37 19 40723224 40723224 + Silent SNP A G G novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTC9C 283237 broad.mit.edu 37 11 62496235 62496235 + 5'UTR SNP T A A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTF1 7270 broad.mit.edu 37 9 135251296 135251297 + 3'UTR DEL CT - - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTF1 7270 hgsc.bcm.edu 37 9 135277682 135277682 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTF2 8458 hgsc.bcm.edu;ucsc.edu 37 1 117641487 117641487 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTI1 9675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36634747 36634747 + Silent SNP T T C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTI1 9675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36641291 36641291 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTI1 9675 hgsc.bcm.edu;ucsc.edu 37 20 36631058 36631058 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTI1 9675 hgsc.bcm.edu;ucsc.edu 37 20 36641536 36641536 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTK 7272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 80744856 80744856 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTK 7272 hgsc.bcm.edu;ucsc.edu 37 6 80746291 80746291 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTLL11 158135 hgsc.bcm.edu;ucsc.edu 37 9 124794125 124794125 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL1 25809 broad.mit.edu 37 22 43435575 43435576 + 3'UTR INS - A A rs36120119 bycluster;by1000genomes TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTLL1 25809 broad.mit.edu 37 22 43435575 43435576 + 3'UTR INS - A A rs36120119 bycluster;by1000genomes TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTLL1 25809 broad.mit.edu;ucsc.edu 37 22 43464519 43464519 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTLL1 25809 hgsc.bcm.edu;ucsc.edu 37 22 43464514 43464514 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL2 83887 hgsc.bcm.edu 37 6 167753863 167753863 + Silent SNP T T C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL2 83887 hgsc.bcm.edu 37 6 167753863 167753863 + Silent SNP T T C novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL3 26140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9868880 9868880 + Silent SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTLL4 9654 broad.mit.edu;ucsc.edu 37 2 219609908 219609908 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTLL4 9654 hgsc.bcm.edu 37 2 219602963 219602964 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTLL4 9654 hgsc.bcm.edu 37 2 219609933 219609934 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTLL4 9654 hgsc.bcm.edu;ucsc.edu 37 2 219612071 219612071 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL4 9654 hgsc.bcm.edu;ucsc.edu 37 2 219618334 219618334 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL5 23093 hgsc.bcm.edu;ucsc.edu 37 14 76238174 76238174 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTLL5 23093 hgsc.bcm.edu;ucsc.edu 37 14 76349240 76349240 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTLL6 284076 broad.mit.edu 37 17 46839995 46839995 + 3'UTR DEL C - - novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTLL6 284076 hgsc.bcm.edu;ucsc.edu 37 17 46882287 46882303 + Frame_Shift_Del DEL CTTTCCAAAGTCGGGCA CTTTCCAAAGTCGGGCA - novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 CTTTCCAAAGTCGGGCA CTTTCCAAAGTCGGGCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu 37 2 179406098 179406098 + Missense_Mutation SNP T A A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx TTN 7273 broad.mit.edu 37 2 179437576 179437576 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTN 7273 broad.mit.edu 37 2 179604751 179604751 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179424711 179424711 + Silent SNP T T A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179441300 179441300 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179449638 179449638 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179460510 179460510 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179558720 179558720 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179572409 179572409 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179395676 179395676 + Silent SNP C C T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179397153 179397153 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179398617 179398617 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179399168 179399168 + Silent SNP C C T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179401957 179401957 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179404241 179404241 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179404327 179404327 + Missense_Mutation SNP T T G rs191054704 by1000genomes TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179406075 179406075 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179416718 179416718 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179417031 179417031 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179422748 179422748 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179425394 179425394 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179426804 179426804 + Missense_Mutation SNP A A T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179427281 179427281 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179428026 179428026 + Silent SNP T T C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179433486 179433486 + Silent SNP G G A novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179435668 179435668 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179436709 179436709 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179437362 179437362 + Silent SNP T T A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179439168 179439168 + Nonsense_Mutation SNP A A C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179441832 179441832 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179452123 179452123 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179454614 179454614 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179457765 179457765 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179466064 179466064 + Nonsense_Mutation SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179468956 179468956 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179468975 179468975 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179474417 179474417 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179476554 179476554 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179481863 179481863 + Silent SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179484439 179484439 + Silent SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179484778 179484778 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179485254 179485254 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179485685 179485685 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179490104 179490104 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179504809 179504809 + Silent SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179566270 179566270 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179569401 179569401 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179571302 179571302 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179582267 179582267 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179582323 179582323 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179584416 179584416 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179587658 179587658 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179587903 179587903 + Silent SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179591818 179591818 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179593688 179593688 + Silent SNP A A G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179598118 179598118 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179600277 179600277 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179604819 179604819 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179605552 179605552 + Silent SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179613182 179613182 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179614716 179614716 + Silent SNP A A G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179616303 179616303 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179622487 179622487 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179631234 179631234 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179634604 179634604 + Nonsense_Mutation SNP C C A rs143767300 unknown;alternate_allele TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179634827 179634827 + Silent SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179643760 179643760 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179664360 179664360 + Silent SNP C C T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179665198 179665198 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 broad.mit.edu;ucsc.edu 37 2 179435409 179435409 + Silent SNP C T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTN 7273 broad.mit.edu;ucsc.edu 37 2 179439235 179439235 + Missense_Mutation SNP G T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTN 7273 broad.mit.edu;ucsc.edu 37 2 179479674 179479674 + Silent SNP C T T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx TTN 7273 broad.mit.edu;ucsc.edu 37 2 179516238 179516238 + Silent SNP A T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTN 7273 broad.mit.edu;ucsc.edu 37 2 179575503 179575503 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTN 7273 hgsc.bcm.edu 37 2 179407913 179407913 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID TTN 7273 hgsc.bcm.edu 37 2 179429258 179429258 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu 37 2 179464025 179464025 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu 37 2 179506014 179506016 + In_Frame_Del DEL TTC TTC - novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu 37 2 179549068 179549068 + Intron SNP G G A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu 37 2 179549070 179549070 + Intron SNP A A G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu 37 2 179559416 179559416 + Intron SNP G G T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu 37 2 179591821 179591821 + Silent SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu 37 2 179611843 179611875 + In_Frame_Del DEL TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu 37 2 179614187 179614187 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu 37 2 179633434 179633435 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu 37 2 179648812 179648812 + Missense_Mutation SNP G G T rs138788406 unknown;alternate_allele TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID TTN 7273 hgsc.bcm.edu 37 2 179648841 179648841 + Missense_Mutation SNP C C A rs141961878 unknown;alternate_allele TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179399891 179399891 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179401198 179401198 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179405009 179405009 + Silent SNP T T A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179410271 179410271 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179422465 179422465 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179438104 179438111 + Frame_Shift_Del DEL CTTCCACC CTTCCACC - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 CTTCCACC CTTCCACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179472591 179472591 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179476244 179476244 + Intron SNP A A T novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179498144 179498144 + Intron SNP A A G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179516214 179516219 + In_Frame_Del DEL CACCAG CACCAG - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 CACCAG CACCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179544067 179544067 + Intron SNP T T C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179582067 179582067 + Intron SNP A A C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179593749 179593749 + Intron SNP T T C rs192553687 by1000genomes TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179595296 179595296 + Silent SNP T T C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179614382 179614382 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179642494 179642494 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179665291 179665291 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179667069 179667069 + Splice_Site SNP C C T novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTPA 7274 broad.mit.edu 37 8 63973792 63973792 + 3'UTR SNP A C C novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTYH1 57348 broad.mit.edu 37 19 54942452 54942452 + Intron SNP A C C novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTYH1 57348 broad.mit.edu 37 19 54943038 54943038 + Intron DEL T - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTYH1 57348 broad.mit.edu 37 19 54947546 54947546 + 3'UTR SNP A C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTYH1 57348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54942314 54942314 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTYH2 94015 broad.mit.edu 37 17 72209750 72209750 + Silent SNP C T T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TTYH2 94015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72233486 72233486 + Silent SNP G G T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTYH2 94015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72249930 72249930 + Silent SNP C C T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTYH2 94015 hgsc.bcm.edu 37 17 72240168 72240168 + Missense_Mutation SNP G G A rs35682745 bycluster;byfrequency;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTYH2 94015 hgsc.bcm.edu;ucsc.edu 37 17 72239583 72239583 + Missense_Mutation SNP A A G novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTYH2 94015 hgsc.bcm.edu;ucsc.edu 37 17 72240168 72240168 + Missense_Mutation SNP G G A rs35682745 bycluster;byfrequency;by1000genomes TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TTYH2 94015 hgsc.bcm.edu;ucsc.edu 37 17 72256287 72256287 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TTYH3 80727 broad.mit.edu 37 7 2698601 2698601 + Silent SNP C T T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUB 7275 broad.mit.edu;hgsc.bcm.edu 37 11 8060361 8060361 + 5'UTR SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUB 7275 hgsc.bcm.edu 37 11 8061180 8061180 + Intron SNP T T C novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUB 7275 hgsc.bcm.edu 37 11 8111676 8111676 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUB 7275 hgsc.bcm.edu;ucsc.edu 37 11 8118839 8118839 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA1A 7846 broad.mit.edu 37 12 49579013 49579013 + Missense_Mutation SNP C T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBA1C 84790 hgsc.bcm.edu 37 12 49666182 49666182 + Silent SNP G G A rs17123575 byfrequency TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA3C 7278 hgsc.bcm.edu 37 13 19751274 19751274 + Silent SNP G G A rs143115179 byfrequency TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA3C 7278 hgsc.bcm.edu 37 13 19751274 19751274 + Silent SNP G G A rs143115179 byfrequency TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA3D 113457 hgsc.bcm.edu 37 2 132237732 132237732 + Missense_Mutation SNP C C T rs76125467 bycluster TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA3D 113457 hgsc.bcm.edu 37 2 132237983 132237983 + Silent SNP A A G rs71347110 bycluster TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA3D 113457 hgsc.bcm.edu 37 2 132237983 132237983 + Silent SNP A A G rs71347110 bycluster TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA3D 113457 hgsc.bcm.edu 37 2 132238286 132238286 + Silent SNP C C T rs111626841 bycluster;byfrequency;by1000genomes TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBA4A 7277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220115231 220115231 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBA4A 7277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220116808 220116808 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBA8 51807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18609612 18609612 + Silent SNP C C A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBAL3 79861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5435755 5435755 + Missense_Mutation SNP T T C rs181652174 by1000genomes;alternate_allele TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBAL3 79861 hgsc.bcm.edu;ucsc.edu 37 10 5442885 5442885 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBB1 81027 broad.mit.edu 37 20 57599843 57599843 + 3'UTR SNP G T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB1 81027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57599336 57599336 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB1 81027 broad.mit.edu;ucsc.edu 37 20 57598805 57598805 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB 203068 broad.mit.edu 37 6 30688176 30688176 + 5'UTR SNP T C C novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB 203068 broad.mit.edu;hgsc.bcm.edu 37 6 30692126 30692126 + Silent SNP C C A rs146810731 unknown;alternate_allele TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB 203068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30688293 30688293 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB 203068 hgsc.bcm.edu;ucsc.edu 37 6 30691536 30691543 + Frame_Shift_Del DEL ATGAGTGG ATGAGTGG - novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 ATGAGTGG ATGAGTGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB2B 347733 broad.mit.edu 37 6 3225818 3225818 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB2B 347733 broad.mit.edu 37 6 3227737 3227737 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB2C 0 broad.mit.edu 37 9 140137360 140137360 + Silent SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB2C 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140137408 140137408 + Silent SNP C C A rs151064868 unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB3 10381 broad.mit.edu 37 16 89986131 89986131 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB3 10381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 90001521 90001521 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB3 10381 broad.mit.edu;ucsc.edu 37 16 89986049 89986049 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBB4 0 broad.mit.edu;hgsc.bcm.edu 37 19 6501365 6501365 + Silent SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6496076 6496076 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBB6 84617 broad.mit.edu 37 18 12324969 12324969 + Intron SNP A C C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141069885 141069885 + 5'UTR SNP A C C rs62581043 by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141070687 141070687 + Silent SNP C T T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141071078 141071078 + Missense_Mutation SNP A G G rs71634627 unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141071078 141071078 + Missense_Mutation SNP A G G rs71634627 unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141071110 141071110 + Silent SNP A G G rs76886508 byfrequency TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141071478 141071478 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBBP5 643224 broad.mit.edu 37 9 141071484 141071484 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBG1 7283 broad.mit.edu;hgsc.bcm.edu 37 17 40765980 40765980 + Silent SNP C C T rs145699955 unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBG1 7283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40764111 40764111 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBG2 27175 hgsc.bcm.edu;ucsc.edu 37 17 40812738 40812738 + Intron SNP A A T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP2 10844 broad.mit.edu 37 10 135106637 135106637 + Silent SNP C T T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBGCP2 10844 broad.mit.edu;hgsc.bcm.edu 37 10 135101707 135101707 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP2 10844 hgsc.bcm.edu;ucsc.edu 37 10 135102393 135102393 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBGCP3 10426 broad.mit.edu 37 13 113201891 113201891 + Intron SNP T A A rs112103679 byfrequency;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBGCP3 10426 broad.mit.edu 37 13 113201894 113201894 + Intron SNP C T T rs112767817 byfrequency TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBGCP3 10426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 113242269 113242269 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP3 10426 hgsc.bcm.edu;ucsc.edu 37 13 113158951 113158951 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP3 10426 hgsc.bcm.edu;ucsc.edu 37 13 113176789 113176789 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP5 114791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 22846911 22846911 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP5 114791 hgsc.bcm.edu 37 15 22836163 22836163 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBGCP6 85378 broad.mit.edu 37 22 50683032 50683033 + 5'UTR INS - T T rs11382738 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUBGCP6 85378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50657163 50657163 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP6 85378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50660936 50660936 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUBGCP6 85378 hgsc.bcm.edu 37 22 50682273 50682273 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBGCP6 85378 hgsc.bcm.edu;ucsc.edu 37 22 50664352 50664352 + Silent SNP G G A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBGCP6 85378 hgsc.bcm.edu;ucsc.edu 37 22 50665215 50665215 + Silent SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUBGCP6 85378 hgsc.bcm.edu;ucsc.edu 37 22 50682713 50682713 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUFM 7284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28857318 28857318 + Silent SNP G G A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUFT1 7286 hgsc.bcm.edu;ucsc.edu 37 1 151512886 151512886 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TULP1 7287 broad.mit.edu;hgsc.bcm.edu 37 6 35471404 35471404 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TULP1 7287 broad.mit.edu;hgsc.bcm.edu 37 6 35479476 35479476 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TULP3 7289 hgsc.bcm.edu 37 12 3029963 3029963 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TULP3 7289 hgsc.bcm.edu;ucsc.edu 37 12 3031528 3031528 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TULP3 7289 hgsc.bcm.edu;ucsc.edu 37 12 3047337 3047337 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TULP4 56995 broad.mit.edu 37 6 158923758 158923758 + Silent SNP G C C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TULP4 56995 broad.mit.edu;ucsc.edu 37 6 158924983 158924983 + Missense_Mutation SNP T A A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TULP4 56995 hgsc.bcm.edu;ucsc.edu 37 6 158873196 158873196 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TUSC1 286319 broad.mit.edu;hgsc.bcm.edu 37 9 25677810 25677810 + Silent SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUSC2 11334 broad.mit.edu 37 3 50362462 50362462 + 3'UTR DEL A - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUSC3 7991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 15480643 15480643 + Missense_Mutation SNP A A C rs11545035 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUSC3 7991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 15531300 15531300 + Silent SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUSC5 286753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1198811 1198811 + Silent SNP C C T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TUSC5 286753 broad.mit.edu;ucsc.edu 37 17 1198861 1198861 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TUT1 64852 broad.mit.edu;hgsc.bcm.edu 37 11 62348882 62348882 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TWF2 11344 broad.mit.edu;ucsc.edu 37 3 52273016 52273016 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TWISTNB 221830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 19737956 19737956 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TWISTNB 221830 hgsc.bcm.edu;ucsc.edu 37 7 19738224 19738224 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TWSG1 57045 hgsc.bcm.edu 37 18 9399343 9399343 + Splice_Site SNP G G A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXLNA 200081 broad.mit.edu 37 1 32645838 32645838 + Intron SNP C A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXLNA 200081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32646917 32646917 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXLNA 200081 hgsc.bcm.edu 37 1 32658881 32658881 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXLNA 200081 hgsc.bcm.edu;ucsc.edu 37 1 32658884 32658885 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXLNA 200081 hgsc.bcm.edu;ucsc.edu 37 1 32658886 32658887 + Frame_Shift_Del DEL GC GC - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXLNA 200081 hgsc.bcm.edu;ucsc.edu 37 1 32660776 32660776 + Missense_Mutation SNP C C T rs77692511 bycluster;byfrequency;by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXLNB 167838 hgsc.bcm.edu;ucsc.edu 37 6 139583897 139583899 + In_Frame_Del DEL TGA TGA - novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 TGA TGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXN2 25828 broad.mit.edu 37 22 36863675 36863676 + 3'UTR DEL CT - - rs148887681 by1000genomes TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXN2 25828 hgsc.bcm.edu;ucsc.edu 37 22 36872895 36872895 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXN 7295 broad.mit.edu 37 9 113018762 113018762 + 5'UTR SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXN 7295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113007067 113007067 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC11 51061 broad.mit.edu 37 16 11836616 11836616 + 5'UTR SNP G A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXNDC11 51061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11773280 11773280 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC12 51060 broad.mit.edu 37 1 52520880 52520880 + 5'UTR DEL T - - novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXNDC12 51060 broad.mit.edu 37 1 52520880 52520880 + 5'UTR DEL T - - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXNDC12 51060 broad.mit.edu;ucsc.edu 37 1 52492991 52492991 + Nonsense_Mutation SNP C A A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TXNDC15 79770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134232036 134232036 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC15 79770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134232037 134232037 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC16 57544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 52922174 52922174 + Silent SNP G G C novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC17 84817 hgsc.bcm.edu;ucsc.edu 37 17 6545596 6545596 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXNDC3 0 hgsc.bcm.edu 37 7 37889842 37889842 + Intron SNP C C T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC3 0 hgsc.bcm.edu;ucsc.edu 37 7 37903001 37903001 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXNDC5 81567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7883469 7883469 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC5 81567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7904955 7904955 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNDC5 81567 hgsc.bcm.edu;ucsc.edu 37 6 7904905 7904905 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXNDC6 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 138023808 138023808 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNIP 10628 broad.mit.edu;hgsc.bcm.edu 37 1 145438828 145438828 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C C A C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TXNIP 10628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145440274 145440274 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq TXNIP 10628 broad.mit.edu;ucsc.edu 37 1 145438912 145438912 + Missense_Mutation SNP A G G novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx TXNIP 10628 hgsc.bcm.edu;ucsc.edu 37 1 145440062 145440064 + In_Frame_Del DEL AAG AAG - novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 AAG AAG AAG - AAG AAG Unknown Valid Somatic Phase_I Capture PGM SOLID TXNL1 9352 hgsc.bcm.edu 37 18 54281810 54281810 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXNL4A 10907 hgsc.bcm.edu 37 18 77733688 77733688 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXNL4B 54957 hgsc.bcm.edu;ucsc.edu 37 16 72124573 72124573 + Silent SNP A A G novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TXNRD2 10587 broad.mit.edu;hgsc.bcm.edu 37 22 19883099 19883099 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TXNRD2 10587 hgsc.bcm.edu;ucsc.edu 37 22 19886537 19886537 + Intron SNP C C T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYK2 7297 broad.mit.edu 37 19 10473019 10473019 + Silent SNP C A A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TYK2 7297 broad.mit.edu;hgsc.bcm.edu 37 19 10475698 10475698 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TYK2 7297 broad.mit.edu;hgsc.bcm.edu 37 19 10476537 10476537 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T T C T T Unknown Unknown Somatic Phase_I Capture 454 Illumina HiSeq TYK2 7297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10468695 10468695 + Silent SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq TYK2 7297 broad.mit.edu;ucsc.edu 37 19 10463680 10463680 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TYK2 7297 hgsc.bcm.edu 37 19 10468470 10468470 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID TYR 7299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 88911150 88911151 + Frame_Shift_Ins INS - - A novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYR 7299 hgsc.bcm.edu;ucsc.edu 37 11 88911155 88911155 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TYR 7299 hgsc.bcm.edu;ucsc.edu 37 11 89017963 89017964 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYRO3 7301 hgsc.bcm.edu 37 15 41862436 41862436 + Splice_Site SNP A A G novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYRO3 7301 hgsc.bcm.edu 37 15 41862801 41862801 + Splice_Site SNP G G T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYRO3 7301 hgsc.bcm.edu 37 15 41865311 41865311 + Splice_Site SNP T T C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYRP1 7306 broad.mit.edu 37 9 12693912 12693912 + 5'UTR SNP C T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TYRP1 7306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 12698513 12698513 + Silent SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYRP1 7306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 12708083 12708083 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYW1 55253 broad.mit.edu 37 7 66582492 66582492 + Silent SNP C T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx TYW1 55253 broad.mit.edu;hgsc.bcm.edu 37 7 66532334 66532334 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYW1 55253 broad.mit.edu;hgsc.bcm.edu 37 7 66703498 66703498 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYW1 55253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 66474585 66474585 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq TYW1 55253 hgsc.bcm.edu 37 7 66703328 66703328 + Missense_Mutation SNP G G A rs28450001 bycluster TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TYW1B 441250 hgsc.bcm.edu 37 7 72178756 72178756 + Missense_Mutation SNP C C A rs77546655 bycluster TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TYW1B 441250 hgsc.bcm.edu;ucsc.edu 37 7 72132786 72132786 + Intron SNP G G T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq U2AF1L4 199746 broad.mit.edu 37 19 36233771 36233771 + Intron SNP G T T novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx U2AF1L4 199746 broad.mit.edu 37 19 36235124 36235124 + Intron SNP C T T novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx U2AF1L4 199746 broad.mit.edu;hgsc.bcm.edu 37 19 36235063 36235063 + Intron SNP T T C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq U2AF2 11338 hgsc.bcm.edu;ucsc.edu 37 19 56185308 56185310 + In_Frame_Del DEL GGA GGA - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 GGA GGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UACA 55075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 70960389 70960389 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UACA 55075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 70961034 70961034 + Missense_Mutation SNP T T G novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UACA 55075 hgsc.bcm.edu 37 15 70963410 70963410 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UACA 55075 hgsc.bcm.edu;ucsc.edu 37 15 70961379 70961380 + Frame_Shift_Ins INS - - TA novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UAP1L1 91373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139973455 139973455 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA1 7317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47062342 47062342 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA2 10054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34959981 34959981 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA2 10054 hgsc.bcm.edu 37 19 34935995 34935995 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBA5 79876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132387698 132387698 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq UBA5 79876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132387762 132387762 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA5 79876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132389115 132389115 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq UBA6 55236 broad.mit.edu 37 4 68527583 68527584 + Intron INS - GTGG GTGG rs111642405 bycluster;by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBA6 55236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68514833 68514833 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA6 55236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68547886 68547886 + Silent SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA7 7318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49847308 49847308 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBA7 7318 hgsc.bcm.edu 37 3 49850746 49850746 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBAP1 51271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34241773 34241773 + Silent SNP C C G novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBAP2 55833 broad.mit.edu 37 9 33934653 33934653 + Intron SNP G A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBAP2 55833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33941709 33941709 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBAP2 55833 hgsc.bcm.edu 37 9 33986810 33986810 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBAP2 55833 hgsc.bcm.edu 37 9 33986813 33986813 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBAP2 55833 hgsc.bcm.edu 37 9 33989092 33989092 + Silent SNP C C T novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBAP2L 9898 broad.mit.edu;ucsc.edu 37 1 154229659 154229659 + Missense_Mutation SNP A C C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBAP2L 9898 hgsc.bcm.edu 37 1 154218831 154218831 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBASH3A 53347 hgsc.bcm.edu;ucsc.edu 37 21 43867186 43867186 + Frame_Shift_Del DEL G G - novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBASH3B 84959 hgsc.bcm.edu;ucsc.edu 37 11 122665475 122665475 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBB 7314 hgsc.bcm.edu 37 17 16285560 16285560 + Silent SNP T T C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBB 7314 hgsc.bcm.edu 37 17 16285911 16285911 + Silent SNP A A G novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBC 7316 broad.mit.edu;hgsc.bcm.edu 37 12 125397153 125397153 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBC 7316 hgsc.bcm.edu 37 12 125397187 125397187 + Silent SNP G G A rs71458875 unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBC 7316 hgsc.bcm.edu 37 12 125398050 125398052 + In_Frame_Del DEL TGA TGA - novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 TGA TGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2A 7319 hgsc.bcm.edu 37 X 118715555 118715560 + In_Frame_Del DEL AAATGG AAATGG - novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 AAATGG AAATGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2A 7319 hgsc.bcm.edu;ucsc.edu 37 X 118716565 118716565 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE2D1 7321 broad.mit.edu;hgsc.bcm.edu 37 10 60124536 60124536 + Silent SNP T T A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2D1 7321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 60128479 60128479 + Splice_Site SNP G G T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2D1 7321 hgsc.bcm.edu;ucsc.edu 37 10 60128517 60128517 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2D3 7323 broad.mit.edu 37 4 103718308 103718308 + 3'UTR DEL T - - novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2D3 7323 broad.mit.edu;ucsc.edu 37 4 103723780 103723780 + Nonsense_Mutation SNP G A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2D3 7323 hgsc.bcm.edu;ucsc.edu 37 4 103730895 103730895 + Intron SNP A A G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2E2 7325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 23541185 23541185 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2F 140739 broad.mit.edu 37 2 238950220 238950222 + 3'UTR DEL AAC - - novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2G1 7326 broad.mit.edu 37 17 4174330 4174330 + 3'UTR DEL A - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2G2 7327 hgsc.bcm.edu;ucsc.edu 37 21 46207826 46207826 + Splice_Region SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE2H 7328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129479130 129479130 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2H 7328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129592346 129592346 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2I 7329 hgsc.bcm.edu 37 16 1373535 1373535 + Intron SNP A A C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE2I 7329 hgsc.bcm.edu 37 16 1373535 1373535 + Intron SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE2I 7329 hgsc.bcm.edu;ucsc.edu 37 16 1364289 1364289 + Intron SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2J1 51465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90039627 90039627 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2J2 118424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1198752 1198752 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2K 3093 broad.mit.edu 37 4 39780131 39780131 + 3'UTR SNP C A A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2L3 7332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21968852 21968852 + RNA SNP C C T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2L6 9246 broad.mit.edu 37 11 57319687 57319688 + 3'UTR DEL CA - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2MP1 606551 broad.mit.edu 37 16 34404516 34404516 + RNA SNP C T T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2N 7334 hgsc.bcm.edu 37 12 93804524 93804532 + In_Frame_Del DEL TGGGCTTCG TGGGCTTCG - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 TGGGCTTCG TGGGCTTCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2O 63893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74392558 74392558 + Silent SNP G G T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBE2O 63893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74392798 74392798 + Silent SNP G G A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBE2O 63893 hgsc.bcm.edu 37 17 74387548 74387549 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2O 63893 hgsc.bcm.edu 37 17 74387548 74387549 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2O 63893 hgsc.bcm.edu;ucsc.edu 37 17 74398736 74398736 + Silent SNP C C T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID UBE2Q1 55585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154527220 154527220 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2Q1 55585 broad.mit.edu;ucsc.edu 37 1 154522941 154522941 + Nonsense_Mutation SNP C T T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2R2 54926 broad.mit.edu;ucsc.edu 37 9 33817901 33817901 + Missense_Mutation SNP C T T novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE2U 148581 hgsc.bcm.edu;ucsc.edu 37 1 64709839 64709839 + 3'UTR SNP A A T novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE2V1 7335 hgsc.bcm.edu 37 20 48732051 48732051 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE2V2(dist=528758) 0 hgsc.bcm.edu;ucsc.edu 37 8 49503212 49503212 + IGR SNP C C A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE2W 55284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74742665 74742665 + Missense_Mutation SNP G G T rs17855421 unknown;alternate_allele TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3A 7337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 25616769 25616769 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3B 89910 broad.mit.edu;hgsc.bcm.edu 37 12 109935725 109935725 + Silent SNP T T C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3B 89910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109967774 109967774 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3B 89910 hgsc.bcm.edu;ucsc.edu 37 12 109961798 109961798 + Missense_Mutation SNP G G A rs150941198 unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBE3C 9690 broad.mit.edu;hgsc.bcm.edu 37 7 156967613 156967613 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3C 9690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156974262 156974262 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3C 9690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 157049683 157049683 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE3C 9690 broad.mit.edu;ucsc.edu 37 7 157018150 157018150 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBE4A 9354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118263549 118263549 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE4B 10277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10163026 10163026 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE4B 10277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10163061 10163061 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE4B 10277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10166557 10166557 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE4B 10277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10238756 10238758 + In_Frame_Del DEL GGG GGG - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 GGG GGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBE4B 10277 broad.mit.edu;ucsc.edu 37 1 10221342 10221342 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBFD1 56061 hgsc.bcm.edu 37 16 23573998 23573998 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBIAD1 29914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11333752 11333752 + Missense_Mutation SNP C C A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBIAD1 29914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11345857 11345858 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBIAD1 29914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11345987 11345987 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBL4A 8266 broad.mit.edu 37 X 153714611 153714611 + Frame_Shift_Del DEL G - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBL4B 164153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110655193 110655193 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBL5 59286 broad.mit.edu 37 19 9940794 9940794 + 3'UTR SNP T A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBLCP1 134510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158696067 158696067 + Silent SNP C C G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBLCP1 134510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158697539 158697539 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBLCP1 134510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158710292 158710292 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBN1 29855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4903144 4903144 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBN1 29855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4920562 4920562 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBN1 29855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4924865 4924865 + Silent SNP G G A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBN1 29855 broad.mit.edu;ucsc.edu 37 16 4925034 4925034 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBN1 29855 hgsc.bcm.edu 37 16 4911047 4911047 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBN1 29855 hgsc.bcm.edu 37 16 4923048 4923048 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBN1 29855 hgsc.bcm.edu 37 16 4924285 4924285 + Nonsense_Mutation SNP C C G novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBN1 29855 hgsc.bcm.edu 37 16 4924863 4924863 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBN2 254048 broad.mit.edu;hgsc.bcm.edu 37 7 138958118 138958118 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBN2 254048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138944050 138944050 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBN2 254048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138958746 138958746 + Silent SNP T T A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBOX5 22888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3103217 3103217 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBP1 7342 broad.mit.edu;hgsc.bcm.edu 37 3 33481335 33481335 + Silent SNP G G T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBP1 7342 hgsc.bcm.edu 37 3 33450220 33450220 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBQLN1 29979 broad.mit.edu 37 9 86276533 86276533 + 3'UTR DEL T - - rs143887313 bycluster;by1000genomes TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBQLN1 29979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86279973 86279973 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBQLN1 29979 broad.mit.edu;ucsc.edu 37 9 86276810 86276810 + Silent SNP G C C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBQLN3 50613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5528857 5528857 + Silent SNP G G A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBQLNL 143630 broad.mit.edu 37 11 5537739 5537739 + 5'UTR SNP T C C novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBQLNL 143630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5537653 5537653 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR1 197131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43281101 43281101 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR1 197131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43307885 43307885 + Splice_Site SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR1 197131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43317589 43317589 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR1 197131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43360146 43360146 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR1 197131 broad.mit.edu;ucsc.edu 37 15 43299453 43299453 + Missense_Mutation SNP A C C novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBR1 197131 hgsc.bcm.edu;ucsc.edu 37 15 43320014 43320014 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBR1 197131 hgsc.bcm.edu;ucsc.edu 37 15 43367229 43367229 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBR2 23304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42604791 42604791 + Silent SNP C C T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR2 23304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42637945 42637945 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR2 23304 hgsc.bcm.edu;ucsc.edu 37 6 42626515 42626515 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR3 130507 broad.mit.edu 37 2 170871495 170871495 + Intron DEL C - - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBR3 130507 broad.mit.edu 37 2 170938525 170938525 + 3'UTR DEL T - - novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBR3 130507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170806129 170806129 + Silent SNP T T C novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR3 130507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170806130 170806130 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR3 130507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170863656 170863656 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR3 130507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170885902 170885902 + Silent SNP T T A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR4 23352 broad.mit.edu 37 1 19401274 19401274 + 3'UTR SNP G C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBR4 23352 broad.mit.edu;hgsc.bcm.edu 37 1 19480421 19480421 + Silent SNP G G T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu 37 1 19505691 19505691 + Silent SNP T T C novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19407977 19407977 + Silent SNP G G A rs138176260 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19445444 19445444 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19447690 19447690 + Silent SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19455528 19455528 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19471346 19471346 + Silent SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19482023 19482023 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19488213 19488213 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19499967 19499967 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR4 23352 broad.mit.edu;ucsc.edu 37 1 19446815 19446815 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBR4 23352 hgsc.bcm.edu 37 1 19501507 19501507 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBR4 23352 hgsc.bcm.edu;ucsc.edu 37 1 19414403 19414403 + Silent SNP G G A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID UBR5 51366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 103297526 103297526 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR5 51366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 103327008 103327008 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR5 51366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 103341598 103341598 + Silent SNP A A G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UBR5 51366 hgsc.bcm.edu 37 8 103266717 103266717 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBR5 51366 hgsc.bcm.edu 37 8 103274282 103274282 + Missense_Mutation SNP A A T novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR5 51366 hgsc.bcm.edu 37 8 103283417 103283417 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID UBR5 51366 hgsc.bcm.edu 37 8 103307655 103307656 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR5 51366 hgsc.bcm.edu 37 8 103307655 103307656 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBR5 51366 hgsc.bcm.edu;ucsc.edu 37 8 103266717 103266717 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBR7 55148 broad.mit.edu 37 14 93693406 93693406 + 3'UTR SNP C A A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBR7 55148 hgsc.bcm.edu;ucsc.edu 37 14 93678384 93678384 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBR7 55148 hgsc.bcm.edu;ucsc.edu 37 14 93686659 93686659 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBTD1 80019 broad.mit.edu 37 10 99330453 99330453 + 3'UTR SNP C A A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBTF 7343 broad.mit.edu 37 17 42284469 42284469 + 3'UTR DEL T - - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBTF 7343 broad.mit.edu 37 17 42284469 42284469 + 3'UTR DEL T - - novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBTF 7343 broad.mit.edu 37 17 42284469 42284469 + 3'UTR DEL T - - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBTF 7343 broad.mit.edu 37 17 42284469 42284469 + 3'UTR DEL T - - novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBTF 7343 broad.mit.edu 37 17 42284469 42284469 + 3'UTR DEL T - - novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBTF 7343 hgsc.bcm.edu 37 17 42286826 42286826 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBXN10 127733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20517187 20517187 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UBXN11 91544 broad.mit.edu 37 1 26608878 26608883 + In_Frame_Del DEL CCGGGA - - rs140364749 bycluster;by1000genomes TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 CCGGGA CCGGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN11 91544 broad.mit.edu 37 1 26608890 26608891 + Frame_Shift_Del DEL CC - - rs140364749 bycluster;by1000genomes;alternate_allele TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN11 91544 broad.mit.edu 37 1 26608893 26608896 + Frame_Shift_Del DEL GGAC - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 GGAC GGAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN11 91544 broad.mit.edu 37 1 26623424 26623424 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN11 91544 broad.mit.edu;ucsc.edu 37 1 26609138 26609138 + Splice_Site SNP A C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN1 51035 broad.mit.edu 37 11 62445601 62445601 + Intron SNP G A A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN1 51035 broad.mit.edu 37 11 62445741 62445741 + Intron SNP C T T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UBXN2A 165324 hgsc.bcm.edu;ucsc.edu 37 2 24222556 24222556 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UBXN6 80700 broad.mit.edu;hgsc.bcm.edu 37 19 4446542 4446542 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UCHL3 7347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 76140954 76140954 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UCHL5 51377 broad.mit.edu 37 1 193028132 193028133 + Intron INS - G G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UCK1 83549 broad.mit.edu 37 9 134400283 134400283 + 3'UTR DEL C - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UCK1 83549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134405914 134405914 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UCK2 7371 broad.mit.edu 37 1 165877195 165877195 + 3'UTR DEL T - - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UCK2 7371 broad.mit.edu 37 1 165877195 165877195 + 3'UTR DEL T - - novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UCK2 7371 broad.mit.edu 37 1 165877195 165877195 + 3'UTR DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UCK2 7371 hgsc.bcm.edu;ucsc.edu 37 1 165859456 165859456 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UCP1 7350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 141484270 141484270 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UCP2 7351 hgsc.bcm.edu;ucsc.edu 37 11 73686108 73686108 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UEVLD 55293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18600293 18600293 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UFC1 51506 broad.mit.edu 37 1 161123726 161123726 + 5'UTR SNP G T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UFD1L 7353 broad.mit.edu 37 22 19438137 19438137 + 3'UTR SNP G A A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UFD1L 7353 broad.mit.edu 37 22 19452561 19452561 + Intron SNP A C C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UFM1 51569 broad.mit.edu 37 13 38935215 38935215 + 3'UTR DEL T - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128867214 128867214 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128867224 128867224 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128878020 128878020 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128927880 128927880 + Silent SNP G G T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128927889 128927889 + Silent SNP G G T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128928844 128928844 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGGT2 55757 hgsc.bcm.edu;ucsc.edu 37 13 96589247 96589247 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGP2 7360 broad.mit.edu 37 2 64069233 64069233 + 5'UTR SNP A C C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGP2 7360 hgsc.bcm.edu;ucsc.edu 37 2 64083539 64083539 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT1A4 54657 broad.mit.edu 37 2 234628268 234628268 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT1A4 54657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234627516 234627516 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT1A5 54579 broad.mit.edu 37 2 234656710 234656710 + Intron SNP G A A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT1A6 54578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234602164 234602164 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT1A7 54577 broad.mit.edu 37 2 234591037 234591037 + Missense_Mutation SNP G A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT1A7 54577 broad.mit.edu;hgsc.bcm.edu 37 2 234591121 234591121 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT1A7 54577 broad.mit.edu;hgsc.bcm.edu 37 2 234591142 234591142 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT1A8 54576 broad.mit.edu;hgsc.bcm.edu 37 2 234526756 234526757 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT1A8 54576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234526875 234526875 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2A1 10941 broad.mit.edu 37 4 70455274 70455274 + Missense_Mutation SNP C T T rs150861593 byfrequency TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT2A1 10941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 70460937 70460937 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2A1 10941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 70464995 70464995 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2A3 79799 broad.mit.edu;hgsc.bcm.edu 37 4 69795773 69795773 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2A3 79799 broad.mit.edu;hgsc.bcm.edu 37 4 69817503 69817503 + RNA SNP T T A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2A3 79799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69816847 69816847 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2A3 79799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69817431 69817431 + Silent SNP G G A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B10 7365 broad.mit.edu 37 4 69870535 69870535 + 3'UTR SNP C A A rs185908686 by1000genomes;alternate_allele TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT2B10 7365 broad.mit.edu 37 4 69870669 69870669 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT2B10 7365 broad.mit.edu;hgsc.bcm.edu 37 4 69692199 69692199 + Silent SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B11 10720 broad.mit.edu;hgsc.bcm.edu 37 4 70066177 70066177 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B11 10720 broad.mit.edu;hgsc.bcm.edu 37 4 70078407 70078407 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B15 7366 broad.mit.edu;hgsc.bcm.edu 37 4 69519852 69519852 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B15 7366 hgsc.bcm.edu 37 4 69514377 69514377 + Intron SNP A A T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT2B17 7367 hgsc.bcm.edu 37 4 69403349 69403349 + Silent SNP C C T rs146629248 byfrequency TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT2B17 7367 hgsc.bcm.edu 37 4 69417570 69417570 + Silent SNP A A G rs76593659 unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT2B28 54490 hgsc.bcm.edu 37 4 70160277 70160277 + Missense_Mutation SNP T T G rs78792884 unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT2B4 7363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 70346629 70346629 + Splice_Site SNP C C G rs71599906 bycluster;byfrequency TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B4 7363 hgsc.bcm.edu 37 4 70359429 70359430 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B4 7363 hgsc.bcm.edu;ucsc.edu 37 4 70361487 70361487 + Silent SNP T T C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B7 7364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69962460 69962460 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B7 7364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69972925 69972925 + Silent SNP T T C rs147582860 byfrequency;alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT2B7 7364 hgsc.bcm.edu;ucsc.edu 37 4 69962480 69962483 + Frame_Shift_Del DEL TAAC TAAC - novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 TAAC TAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT3A1 133688 broad.mit.edu;hgsc.bcm.edu 37 5 35991189 35991189 + Intron SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT3A1 133688 hgsc.bcm.edu 37 5 35965615 35965615 + Missense_Mutation SNP T T C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT3A1 133688 hgsc.bcm.edu;ucsc.edu 37 5 35988576 35988576 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT3A2 167127 broad.mit.edu 37 5 36035666 36035666 + 3'UTR SNP C T T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UGT8 7368 hgsc.bcm.edu;ucsc.edu 37 4 115577893 115577893 + Intron SNP G G C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UGT8 7368 hgsc.bcm.edu;ucsc.edu 37 4 115585285 115585286 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UGT8 7368 hgsc.bcm.edu;ucsc.edu 37 4 115597317 115597317 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UHRF1 29128 broad.mit.edu 37 19 4941811 4941811 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UHRF1 29128 broad.mit.edu;hgsc.bcm.edu 37 19 4950899 4950899 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1 29128 broad.mit.edu;hgsc.bcm.edu 37 19 4954476 4954476 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1 29128 hgsc.bcm.edu 37 19 4954679 4954680 + Frame_Shift_Ins INS - - C rs78623648 bycluster;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1 54887 broad.mit.edu 37 6 34841704 34841704 + 3'UTR DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UHRF1BP1 54887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34789455 34789455 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1 54887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34826414 34826414 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1 54887 hgsc.bcm.edu 37 6 34826902 34826902 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UHRF1BP1 54887 hgsc.bcm.edu;ucsc.edu 37 6 34825920 34825921 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1L 23074 broad.mit.edu 37 12 100496634 100496634 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UHRF1BP1L 23074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100433380 100433380 + Silent SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1L 23074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100452921 100452921 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1L 23074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100478292 100478292 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF1BP1L 23074 hgsc.bcm.edu;ucsc.edu 37 12 100433530 100433530 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UHRF2 115426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 6420934 6420934 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UHRF2 115426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 6420988 6420988 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UIMC1 51720 broad.mit.edu 37 5 176332256 176332256 + 3'UTR DEL T - - novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UIMC1 51720 broad.mit.edu;hgsc.bcm.edu 37 5 176402397 176402397 + Nonsense_Mutation SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UIMC1 51720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176332369 176332369 + Silent SNP A A G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UIMC1 51720 hgsc.bcm.edu 37 5 176338345 176338345 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UIMC1 51720 hgsc.bcm.edu 37 5 176382976 176382976 + Silent SNP T T C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UIMC1 51720 hgsc.bcm.edu;ucsc.edu 37 5 176334129 176334129 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ULBP2 80328 broad.mit.edu;hgsc.bcm.edu 37 6 150267506 150267506 + Splice_Site SNP A A G novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULBP3 79465 hgsc.bcm.edu 37 6 150386572 150386572 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ULK1 8408 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 132400471 132400471 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULK2 9706 broad.mit.edu;ucsc.edu 37 17 19705159 19705159 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ULK3 25989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75134629 75134629 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULK3 25989 hgsc.bcm.edu 37 15 75134624 75134624 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULK3 25989 hgsc.bcm.edu;ucsc.edu 37 15 75134635 75134635 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULK4 54986 broad.mit.edu 37 3 41831052 41831053 + Intron INS - AAA AAA novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ULK4 54986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 41504634 41504634 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULK4 54986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 41795894 41795895 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ULK4 54986 hgsc.bcm.edu 37 3 41860985 41860985 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UMOD 7369 broad.mit.edu 37 16 20344558 20344558 + 3'UTR SNP A G G novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UMOD 7369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20355352 20355352 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UMODL1 89766 broad.mit.edu 37 21 43496429 43496429 + Intron SNP G A A novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UMODL1 89766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 43529671 43529671 + Splice_Site SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UMODL1 89766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 43533907 43533907 + Nonsense_Mutation SNP G G T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UMODL1 89766 hgsc.bcm.edu;ucsc.edu 37 21 43547853 43547853 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UMPS 7372 broad.mit.edu 37 3 124463850 124463851 + 3'UTR INS - T T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UMPS 7372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124457035 124457035 + Missense_Mutation SNP G G A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC119 9094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26875651 26875651 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC119B 84747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121154504 121154504 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13A 23025 broad.mit.edu 37 19 17799246 17799247 + Frame_Shift_Ins INS - G G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC13A 23025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17756598 17756598 + Silent SNP G G A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13A 23025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17760372 17760372 + Silent SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13A 23025 hgsc.bcm.edu 37 19 17729787 17729787 + Intron SNP T T G rs56257446 bycluster;byfrequency;by1000genomes TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC13B 10497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35310690 35310690 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13B 10497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35385805 35385805 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13B 10497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35396577 35396577 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13C 440279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 54626051 54626051 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13C 440279 hgsc.bcm.edu 37 15 54435838 54435838 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC13D 201294 broad.mit.edu 37 17 73830529 73830529 + Silent SNP C T T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC13D 201294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73832900 73832900 + Silent SNP A A T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC13D 201294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73835999 73835999 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC45A 55898 broad.mit.edu 37 15 91479483 91479483 + Intron SNP T C C novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC45A 55898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91478784 91478784 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33477188 33477188 + Silent SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33495265 33495265 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33498340 33498340 + Splice_Site SNP G G C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33501331 33501331 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33513509 33513509 + Silent SNP A A G novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC50 25972 broad.mit.edu 37 2 99226122 99226122 + Intron SNP G T T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC50 25972 broad.mit.edu;hgsc.bcm.edu 37 2 99226157 99226157 + Intron SNP A A T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC50 25972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99232913 99232913 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5A 90249 broad.mit.edu 37 5 176297519 176297519 + Silent SNP T C C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC5A 90249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176295140 176295140 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5A 90249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176305475 176305475 + Splice_Site SNP G G A novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5B 219699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73050863 73050863 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5B 219699 hgsc.bcm.edu 37 10 73044586 73044586 + Silent SNP C C T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC5B 219699 hgsc.bcm.edu 37 10 73057821 73057821 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC5C 8633 broad.mit.edu;hgsc.bcm.edu 37 4 96127874 96127874 + Missense_Mutation SNP G G T rs139568380 byfrequency;alternate_allele TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5CL 222643 broad.mit.edu 37 6 41001862 41001862 + Silent SNP C T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC5CL 222643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41002579 41002579 + Missense_Mutation SNP A A T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5CL 222643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41002736 41002736 + Silent SNP A A G novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5D 137970 broad.mit.edu 37 8 35650487 35650487 + 3'UTR DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC5D 137970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 35631934 35631934 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC5D 137970 hgsc.bcm.edu;ucsc.edu 37 8 35647991 35647991 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4868-01A-01D-1373-10 TCGA-CJ-4868-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC80 285175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 210640619 210640619 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNC80 285175 hgsc.bcm.edu 37 2 210822445 210822445 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC80 285175 hgsc.bcm.edu 37 2 210832287 210832287 + Silent SNP G G T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC80 285175 hgsc.bcm.edu;ucsc.edu 37 2 210678485 210678485 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC80 285175 hgsc.bcm.edu;ucsc.edu 37 2 210777325 210777325 + Silent SNP G G A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC80 285175 hgsc.bcm.edu;ucsc.edu 37 2 210794632 210794632 + Silent SNP A A C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC93A 54346 broad.mit.edu;ucsc.edu 37 6 167721380 167721380 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNC93A 54346 hgsc.bcm.edu 37 6 167728774 167728774 + Missense_Mutation SNP T T C rs79485532 bycluster TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNC93A 54346 hgsc.bcm.edu;ucsc.edu 37 6 167705042 167705042 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNG 7374 hgsc.bcm.edu;ucsc.edu 37 12 109541417 109541417 + Splice_Site SNP G G A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNK 85451 broad.mit.edu 37 17 73814863 73814863 + Silent SNP C T T novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UNK 85451 broad.mit.edu;hgsc.bcm.edu 37 17 73814848 73814848 + Silent SNP A A C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNK 85451 hgsc.bcm.edu 37 17 73805879 73805879 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNK 85451 hgsc.bcm.edu 37 17 73818637 73818637 + Silent SNP A A T novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UNK 85451 hgsc.bcm.edu;ucsc.edu 37 17 73816152 73816152 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UNKL 64718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1417749 1417749 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq Unknown 0 broad.mit.edu 37 10 11715686 11715686 + RNA SNP T C C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 134650414 134650414 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 27551917 27551917 + RNA SNP C T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 29079435 29079435 + RNA SNP G T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 29080850 29080851 + RNA DEL AA - - rs144810223 by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 30986357 30986357 + 5'UTR SNP T C C novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 30987274 30987274 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 3791260 3791260 + RNA DEL A - - novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 48968566 48968566 + RNA SNP A G G rs80150874 unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 49239538 49239538 + 5'UTR SNP A T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 49239581 49239581 + 5'UTR SNP C T T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 49239657 49239657 + 5'UTR SNP C G G rs74850347 unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 10 80157317 80157317 + Intron DEL G - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 110251197 110251197 + IGR SNP A C C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 123330778 123330779 + RNA DEL GT - - rs10579380 bycluster;by1000genomes TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 129567386 129567386 + RNA DEL T - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 13001936 13001936 + RNA DEL A - - novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 13281 13281 + RNA SNP C G G rs78406944 byfrequency TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 13418 13418 + RNA SNP G A A rs75175547 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 13634735 13634735 + RNA SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142621039 142621039 + Intron SNP C T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142713407 142713407 + Intron SNP C T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142713407 142713407 + Intron SNP C T T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142713773 142713773 + Intron SNP C G G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142713774 142713774 + Intron SNP A G G novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142713944 142713944 + Intron SNP C T T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142714007 142714007 + Intron SNP T C C rs1694635 unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142714007 142714007 + Intron SNP T C C rs1694635 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803228 142803228 + Intron SNP T C C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803276 142803278 + Intron DEL AAC - - rs113084635 unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 AAC AAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803299 142803302 + Intron DEL CAAC - - rs113084635 unknown;alternate_allele TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 CAAC CAAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803302 142803302 + Intron SNP C A A rs79529551 byfrequency TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803302 142803303 + Intron INS - AA AA novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803398 142803398 + Intron SNP C A A rs1920859 unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803433 142803433 + Intron SNP G C C novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803734 142803734 + Intron SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803746 142803746 + Intron SNP A G G rs12164570 unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803746 142803746 + Intron SNP A G G rs12164570 unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142803783 142803783 + Intron SNP A T T rs76726627 bycluster TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142804582 142804582 + Intron DEL T - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142806254 142806254 + Intron SNP A G G rs9329484 bycluster;by2hit2allele TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142806254 142806254 + Intron SNP A G G rs9329484 bycluster;by2hit2allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142806254 142806254 + Intron SNP A G G rs9329484 bycluster;by2hit2allele TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142819309 142819309 + Intron SNP C T T rs76602080 bycluster;byfrequency TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 142819310 142819310 + Intron SNP A G G rs78263776 bycluster;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 143255819 143255820 + RNA INS - TTTT TTTT rs36059460 unknown;alternate_allele TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 43283909 43283909 + RNA SNP G A A rs143255343 by1000genomes TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 43283988 43283988 + RNA SNP T C C novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 143403563 143403563 + 5'Flank SNP C A A rs79135943 unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 143403563 143403563 + 5'Flank SNP C A A rs79135943 unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 143425009 143425009 + 5'Flank SNP A G G rs71279370 unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 143425098 143425099 + 5'Flank INS - A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891580 148891580 + RNA SNP A T T rs3880332 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891580 148891580 + RNA SNP A T T rs3880332 bycluster TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891580 148891580 + RNA SNP A T T rs3880332 bycluster TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 55062213 55062213 + RNA SNP C A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 55063168 55063168 + Splice_Site SNP T C C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 63998312 63998312 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 74034364 74034364 + RNA DEL A - - novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 74207868 74207869 + 5'UTR INS - C C rs111326594 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 74209274 74209274 + 3'UTR DEL T - - novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 11 89486328 89486328 + IGR SNP A G G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 205437150 205437151 + RNA INS - GTGT GTGT rs34140801 bycluster;by1000genomes;alternate_allele TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 108913381 108913382 + IGR DEL TA - - rs59843862 bycluster;alternate_allele TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 114184112 114184112 + RNA DEL C - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 227618218 227618218 + RNA SNP G T T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 31279359 31279359 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 243251423 243251423 + RNA DEL A - - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 243251423 243251423 + RNA DEL A - - novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 243251423 243251423 + RNA DEL A - - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 56227468 56227468 + 3'UTR DEL A - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 89405717 89405717 + RNA DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92018 92018 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92018 92018 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92109 92109 + Silent SNP C T T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92116 92116 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92119 92119 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92133 92133 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92133 92133 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92285 92285 + Intron SNP C T T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 92299 92299 + Intron SNP C G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 12 9548786 9548786 + RNA SNP T G G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 31973123 31973133 + 3'UTR DEL TGGAGTCTGTC - - rs112889748 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 TGGAGTCTGTC TGGAGTCTGTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 32373167 32373167 + RNA DEL T - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 14 19856672 19856672 + RNA SNP C A A rs12484715 byhapmap TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 14 22392835 22392835 + Intron SNP A G G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 43439784 43439784 + RNA SNP C T T rs191509438 by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 14 36841025 36841025 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 14 38365281 38365282 + Intron DEL CA - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 14 73079138 73079139 + RNA INS - T T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102292785 102292785 + Missense_Mutation SNP C G G rs143389223 unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102292820 102292820 + Silent SNP G C C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102292820 102292820 + Silent SNP G C C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102292829 102292829 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102293008 102293008 + Intron SNP A G G rs78880292 byfrequency TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102293062 102293064 + Intron DEL CTC - - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102293062 102293064 + Intron DEL CTC - - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102293062 102293064 + Intron DEL CTC - - novel unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 CTC CTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102294771 102294771 + 5'Flank SNP A C C rs79041974 unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102295539 102295539 + 5'Flank SNP A C C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102296140 102296140 + 5'Flank SNP C T T rs72481015 unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102300094 102300094 + 5'Flank SNP G T T rs4965961 unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102303120 102303120 + 5'Flank SNP C G G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102304772 102304772 + 5'Flank SNP T C C novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102304772 102304772 + 5'Flank SNP T C C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 102312241 102312241 + RNA DEL A - - novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 20193216 20193216 + RNA SNP G T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 20488228 20488229 + Splice_Site INS - TGAA TGAA novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 20496765 20496765 + RNA SNP G T T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 20644461 20644461 + Intron SNP C T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 20644585 20644585 + Intron SNP C T T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 22440773 22440773 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28913498 28913498 + RNA SNP T G G novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28929371 28929371 + RNA SNP G T T novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28929443 28929443 + RNA SNP C T T rs692165 bycluster;by1000genomes TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28929547 28929547 + RNA SNP T C C rs4401014 bycluster TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28948349 28948349 + 5'Flank SNP T C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28948349 28948349 + 5'Flank SNP T C C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 28948349 28948349 + 5'Flank SNP T C C novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 29083900 29083900 + RNA SNP A G G novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 29084045 29084045 + RNA SNP T G G rs75345913 bycluster TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 29084045 29084045 + RNA SNP T G G rs75345913 bycluster TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 30771310 30771310 + RNA SNP A C C novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 30771339 30771339 + RNA SNP A G G rs77482636 unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 59153166 59153167 + RNA INS - A A rs34605445 bycluster;by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 62534752 62534753 + RNA INS - T T novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 62534753 62534753 + RNA DEL T - - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 62534753 62534753 + RNA DEL T - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 62534763 62534764 + RNA DEL TA - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 62534991 62534991 + RNA DEL A - - novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 569343 569343 + RNA SNP C T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 569445 569445 + RNA SNP G A A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 76073205 76073205 + Silent SNP C T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 76074431 76074431 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 76074441 76074441 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 76074470 76074470 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 76074470 76074470 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 76075348 76075348 + 3'UTR SNP G T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 79045468 79045468 + RNA SNP A G G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 82620366 82620366 + RNA SNP C T T rs75981106 unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 82620400 82620400 + RNA SNP T C C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 84945393 84945393 + RNA SNP C T T rs437422 byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 84946555 84946556 + RNA INS - T T rs71453238 unknown;alternate_allele TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 84946555 84946556 + RNA INS - TT TT rs71453238 unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 85121557 85121557 + RNA DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 85787980 85787980 + Missense_Mutation SNP T G G rs446487 unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 90835610 90835610 + IGR SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 15 90835636 90835636 + 5'Flank SNP G A A rs188986614 by1000genomes TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 15023180 15023180 + Missense_Mutation SNP C T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 16418712 16418712 + 3'UTR SNP G A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 16418789 16418789 + 3'UTR SNP T C C rs76703033 unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 16465246 16465246 + 5'UTR SNP A G G rs62032873 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 16465246 16465246 + 5'UTR SNP A G G rs62032873 unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 16465314 16465314 + Missense_Mutation SNP A G G novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 16465472 16465472 + Silent SNP T C C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 18441114 18441116 + Splice_Site DEL CAC - - rs3051977 unknown;alternate_allele TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 CAC CAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 18442362 18442362 + Missense_Mutation SNP G A A rs4781792 bycluster TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 21902088 21902088 + RNA SNP C T T rs55647608 byfrequency TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 21902089 21902089 + RNA SNP A G G rs771216 bycluster TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 21902089 21902089 + RNA SNP A G G rs771216 bycluster TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 28354223 28354223 + Missense_Mutation SNP G A A rs457403 bycluster TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 29110458 29110458 + Intron SNP T C C novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 31212808 31212808 + IGR SNP T C C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 31973467 31973467 + RNA SNP T A A rs62054098 unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 32077407 32077407 + RNA SNP G A A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 32077410 32077410 + RNA SNP G T T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 32191961 32191961 + RNA SNP G A A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 32266881 32266881 + RNA DEL T - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 53403273 53403273 + RNA DEL A - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 57611099 57611099 + IGR DEL A - - novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 62996 62996 + Intron SNP A G G rs77408713 unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268121 70268121 + RNA SNP C G G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 74411881 74411881 + Missense_Mutation SNP C T T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 74425826 74425826 + Missense_Mutation SNP G A A rs71363119 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 90161061 90161061 + Intron SNP G A A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 90161578 90161578 + Silent SNP G A A rs13337896 bycluster;by2hit2allele TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 90161578 90161578 + Silent SNP G A A rs13337896 bycluster;by2hit2allele TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 90161666 90161666 + 3'UTR SNP G C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 16 90161902 90161902 + 3'UTR SNP A G G rs6500471 bycluster;byhapmap;by1000genomes TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 700532 700532 + RNA DEL T - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 700532 700532 + RNA DEL T - - novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 713786 713787 + RNA INS - GCT GCT novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 16721400 16721400 + RNA SNP A G G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 16722824 16722824 + RNA SNP G A A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 16723994 16723994 + RNA SNP C T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 16725606 16725607 + RNA INS - C C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 16735046 16735046 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 18315107 18315108 + RNA INS - CT CT rs113907775 bycluster;by1000genomes TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 18333107 18333107 + RNA SNP G C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 18344842 18344842 + RNA SNP C T T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 20319816 20319816 + RNA SNP T C C rs71263794 unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 20405972 20405972 + RNA SNP G A A rs62068021 bycluster;byfrequency TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 21731002 21731002 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 21731234 21731234 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 25758643 25758644 + RNA DEL GA - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 34234138 34234138 + RNA SNP G A A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 34234256 34234256 + RNA SNP G A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 34235676 34235676 + RNA SNP C A A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 37264555 37264555 + 3'UTR SNP G T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 39215669 39215669 + 3'UTR DEL T - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 39215669 39215669 + 3'UTR DEL T - - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 39216302 39216303 + Translation_Start_Site INS - G G rs113441706 unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 39296278 39296278 + RNA SNP G A A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 39566058 39566058 + RNA SNP A C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 41381913 41381914 + Intron INS - T T rs71220402 unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 41382128 41382128 + Intron SNP C T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 43625348 43625348 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 58511110 58511110 + RNA SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 62117156 62117157 + RNA DEL AC - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 76497744 76497744 + RNA SNP T G G novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 76497744 76497744 + RNA SNP T G G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 17 76528621 76528621 + IGR SNP G T T novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 109336 109336 + RNA SNP G T T rs36192673 unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 109344 109344 + RNA SNP T A A novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 109344 109344 + RNA SNP T A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 109344 109344 + RNA SNP T C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 109348 109348 + RNA SNP G A A novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 14179258 14179258 + 5'UTR SNP T G G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 14179258 14179258 + 5'UTR SNP T G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 14184631 14184631 + 3'UTR DEL T - - rs34604224 unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 14188211 14188211 + 3'UTR SNP G T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 14188212 14188212 + 3'UTR SNP G T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 214519 214520 + IGR INS - TTG TTG rs142588910 unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 44249448 44249448 + RNA DEL C - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 18 59420254 59420254 + RNA DEL T - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 91296515 91296515 + RNA DEL A - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 1 91296515 91296515 + RNA DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 20975384 20975384 + RNA SNP G C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 22785425 22785425 + RNA SNP G A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 23329223 23329223 + RNA SNP A T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 23329317 23329317 + RNA SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 23406130 23406130 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 24103159 24103159 + Intron DEL T - - novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 28297113 28297113 + RNA DEL T - - rs113354667 unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 2878502 2878502 + IGR DEL A - - novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 28927087 28927087 + RNA DEL C - - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 28927578 28927579 + RNA INS - A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 33317138 33317140 + RNA DEL TTC - - novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 TTC TTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 34584130 34584130 + Missense_Mutation SNP G T T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 36913800 36913800 + IGR DEL A - - novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 36913800 36913800 + IGR DEL A - - novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 36913800 36913800 + IGR DEL A - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 38375469 38375469 + IGR DEL A - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 52196178 52196178 + RNA SNP C T T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 19 54007225 54007225 + RNA SNP C T T novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 20 31497682 31497682 + Missense_Mutation SNP G T T rs78951406 by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 20 56064058 56064058 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 20 61715967 61715968 + RNA INS - C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 21 10862643 10862643 + IGR SNP C T T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 139045439 139045439 + 3'UTR DEL T - - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 139045439 139045439 + 3'UTR DEL T - - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 139045439 139045442 + 3'UTR DEL TTTT - - novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 TTTT TTTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 139045439 139045442 + 3'UTR DEL TTTT - - novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 TTTT TTTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 139045443 139045444 + 3'UTR INS - A A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 190787980 190787980 + 5'UTR SNP G A A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 190788000 190788000 + 5'UTR SNP C T T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 190789085 190789085 + 3'UTR SNP A T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 21 9766012 9766013 + RNA INS - A A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 21 9769054 9769054 + RNA SNP G A A rs76444830 unknown;alternate_allele TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 21 9769171 9769172 + RNA INS - TT TT novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 206981155 206981155 + RNA DEL C - - rs140143364 bycluster;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 16150885 16150885 + Intron SNP G A A rs71324591 bycluster;byfrequency TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 16150909 16150909 + Intron SNP A G G rs77071741 unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18842438 18842438 + Intron SNP G A A rs9604886 byfrequency TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18842473 18842473 + Intron DEL G - - rs66618606 unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18842473 18842473 + Intron DEL G - - rs66618606 unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844615 18844615 + RNA SNP A G G rs140416 unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844763 18844763 + RNA SNP T C C rs1064849 bycluster TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844763 18844763 + RNA SNP T C C rs1064849 bycluster TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844763 18844763 + RNA SNP T C C rs1064849 bycluster TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844766 18844766 + RNA SNP G A A rs2111402 unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844888 18844888 + RNA SNP A G G rs495165 unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18844888 18844888 + RNA SNP A G G rs495165 unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18846005 18846005 + RNA SNP G A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18846098 18846098 + RNA SNP G A A rs9306211 bycluster TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 18846113 18846113 + RNA SNP C T T rs75891150 unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 20295349 20295349 + RNA SNP A G G novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 20718476 20718477 + Frame_Shift_Ins INS - A A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 20724443 20724443 + 5'UTR SNP G A A novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 20976999 20976999 + RNA SNP C G G novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 20980390 20980390 + RNA SNP A G G novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 25627838 25627838 + IGR SNP C G G novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 240504869 240504869 + 3'UTR SNP G T T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 242946795 242946796 + 3'UTR DEL AG - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 22 48037874 48037874 + Intron DEL T - - novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 38709825 38709825 + 3'UTR SNP C G G novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 38710019 38710019 + 3'UTR DEL T - - rs56728844 unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 89159868 89159868 + Intron DEL T - - novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 89495754 89495754 + RNA DEL A - - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 89986884 89986884 + Intron SNP G A A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 90192968 90192968 + Intron SNP T C C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 90249300 90249300 + RNA DEL G - - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 904970 904970 + Intron DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 95552625 95552625 + RNA SNP C T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 95558330 95558330 + RNA SNP C T T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 96521777 96521777 + Missense_Mutation SNP T C C rs77768218 unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 96525717 96525718 + RNA INS - T T rs111957693 bycluster;by1000genomes TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 96568655 96568655 + Intron SNP A T T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 96568655 96568655 + Intron SNP A T T novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 96568655 96568655 + Intron SNP A T T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 96568655 96568655 + Intron SNP A T T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 2 97950268 97950269 + RNA DEL AG - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 126385091 126385091 + Frame_Shift_Del DEL C - - rs146507124 by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 126386192 126386192 + Splice_Site SNP G A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 126916008 126916008 + Silent SNP T C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 127199650 127199650 + RNA DEL G - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 128580215 128580216 + 3'UTR DEL CA - - rs68112373 bycluster;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 149700473 149700473 + IGR SNP T C C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 159706882 159706882 + Splice_Site SNP A C C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 159819495 159819495 + Intron SNP A G G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 181723083 181723083 + RNA DEL A - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 195427029 195427029 + RNA DEL T - - rs145225726 unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 3 22424176 22424176 + RNA DEL G - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 100082392 100082392 + Intron DEL C - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 106601204 106601204 + 3'UTR SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 106601237 106601237 + 3'UTR SNP G C C novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 120116717 120116717 + Missense_Mutation SNP C A A rs149257591 by1000genomes;alternate_allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 13659429 13659429 + RNA DEL A - - novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 20620789 20620790 + IGR INS - A A novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 20620790 20620790 + IGR DEL A - - novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 20620790 20620790 + IGR DEL A - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 6239041 6239041 + RNA DEL G - - rs144644113 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 75485873 75485873 + IGR SNP G A A rs41529346 unknown;alternate_allele TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 9241928 9241928 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 9241928 9241928 + Missense_Mutation SNP G C C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 9250368 9250368 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 4 96088447 96088447 + RNA DEL C - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 10437892 10437892 + RNA DEL T - - novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 170733147 170733147 + RNA DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 17354457 17354457 + RNA SNP T A A novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 179078891 179078891 + Missense_Mutation SNP T C C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 180651908 180651909 + 5'UTR INS - AAC AAC novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 180699086 180699087 + RNA INS - A A rs11381664 unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 23980775 23980775 + RNA SNP G A A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 28927394 28927394 + RNA SNP C T T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 33162312 33162312 + RNA SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 5 86534689 86534689 + Intron SNP C T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 153603817 153603817 + IGR SNP G C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 166194842 166194842 + RNA DEL G - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 25261582 25261582 + RNA DEL T - - novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 26605221 26605222 + RNA DEL CA - - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 27293740 27293740 + IGR DEL A - - rs34883499 unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 27293740 27293740 + IGR DEL A - - rs34883499 unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 27293740 27293740 + IGR DEL A - - rs34883499 unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 27293740 27293740 + IGR DEL A - - rs34883499 unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 28829145 28829146 + RNA DEL TA - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 32231923 32231923 + 3'UTR SNP T A A novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 6 33859356 33859356 + 5'Flank DEL C - - novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 102004777 102004777 + 5'UTR SNP C A A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 136848967 136848967 + RNA SNP C T T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 141969146 141969147 + RNA DEL TT - - rs10538162 unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 142028321 142028321 + Intron SNP G C C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 142206990 142206990 + Intron SNP C T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 142424604 142424604 + Intron SNP G A A novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 143218162 143218163 + RNA INS - T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 38389495 38389495 + Intron SNP C A A rs2012300 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 38398653 38398653 + Intron SNP C T T rs75695637 bycluster;byfrequency;by1000genomes TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 39873259 39873259 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 39874545 39874545 + IGR DEL A - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 39894421 39894421 + RNA SNP A T T novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 63816325 63816325 + RNA DEL G - - novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 64529883 64529883 + Intron SNP C T T rs55866961 bycluster TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 65160100 65160100 + Intron DEL C - - novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 65222986 65222986 + Intron SNP G T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 65222986 65222986 + Intron SNP G T T novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 65222986 65222986 + Intron SNP G T T novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 65222986 65222986 + Intron SNP G T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 65223026 65223026 + Intron SNP C G G novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 74016919 74016919 + IGR DEL A - - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 74016919 74016919 + IGR DEL A - - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 74016919 74016919 + IGR DEL A - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 92098577 92098577 + IGR SNP G T T novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 7 99590187 99590187 + 3'UTR SNP C T T novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 11873857 11873857 + 3'UTR SNP G A A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 11873857 11873857 + 3'UTR SNP G A A novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 11873862 11873862 + 3'UTR SNP C T T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12428040 12428040 + Intron SNP C A A rs4115597 bycluster;by2hit2allele TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12428040 12428040 + Intron SNP C A A rs4115597 bycluster;by2hit2allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12428250 12428250 + Intron SNP C G G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12428250 12428250 + Intron SNP C G G novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12428649 12428649 + Intron SNP T C C rs66512674 unknown;alternate_allele TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12428650 12428650 + Intron SNP G A A rs593330 unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12435889 12435889 + Intron SNP C A A rs617055 bycluster;byfrequency TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12435889 12435889 + Intron SNP C A A rs617055 bycluster;byfrequency TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 12435889 12435889 + Intron SNP C A A rs617055 bycluster;byfrequency TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 129418744 129418744 + RNA DEL T - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 64698000 64698000 + RNA DEL C - - novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 69214611 69214611 + RNA DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 72316198 72316198 + RNA DEL T - - novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 74332336 74332336 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 8 80783815 80783816 + RNA INS - T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 138898671 138898671 + 3'UTR DEL A - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 15001679 15001679 + Intron SNP A C C novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 15001690 15001690 + Intron SNP A G G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 21278188 21278188 + RNA SNP C G G novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 38572276 38572276 + Intron DEL A - - novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66454921 66454921 + RNA SNP C T T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66457193 66457194 + 5'Flank DEL AG - - rs3068095 unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66459820 66459820 + 5'Flank SNP G C C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66459863 66459863 + 5'Flank SNP G T T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66459898 66459898 + 5'Flank SNP A G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66459898 66459898 + 5'Flank SNP A G G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66459932 66459933 + 5'Flank DEL AA - - rs112939877 unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66459932 66459933 + 5'Flank DEL AA - - rs112939877 unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66466004 66466005 + RNA INS - A A rs71272522 bycluster;byfrequency TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66466172 66466172 + RNA SNP T C C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66466327 66466327 + RNA DEL G - - rs141830071 unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66468755 66468755 + RNA SNP T C C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66468909 66468909 + RNA SNP G A A rs78672302 unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 66468984 66468984 + RNA SNP A C C rs2337649 bycluster;alternate_allele TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68412892 68412892 + RNA SNP G A A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413553 68413553 + RNA SNP T G G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413565 68413565 + RNA SNP G A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413567 68413567 + RNA DEL G - - novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413569 68413569 + RNA SNP C T T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413569 68413569 + RNA SNP C T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413570 68413570 + RNA SNP G A A novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413570 68413570 + RNA SNP G A A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413572 68413572 + RNA SNP C T T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413573 68413573 + RNA SNP G A A novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413573 68413573 + RNA SNP G C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413581 68413581 + RNA SNP G C C rs1809619 byfrequency TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413581 68413581 + RNA SNP G C C rs1809619 byfrequency TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413585 68413585 + RNA SNP G T T rs145928615 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413605 68413606 + RNA DEL CT - - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413605 68413606 + RNA DEL CT - - novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413605 68413606 + RNA DEL CT - - novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413654 68413654 + RNA SNP G A A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68413654 68413654 + RNA SNP G A A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414259 68414259 + RNA SNP C T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414338 68414338 + RNA SNP G T T rs62545747 unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414462 68414462 + RNA SNP A G G rs149255248 unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414462 68414462 + RNA SNP A G G rs149255248 unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414523 68414523 + RNA SNP A G G rs4352957 unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414556 68414556 + RNA SNP G T T rs145693434 unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414561 68414561 + RNA SNP T G G rs111423473 bycluster TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414581 68414581 + RNA SNP T A A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68414733 68414733 + RNA SNP C T T rs151269495 unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 68728904 68728904 + RNA SNP T C C novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 69440119 69440119 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 70182344 70182346 + RNA DEL TTG - - novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 TTG TTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 70182345 70182346 + RNA DEL TG - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 70182346 70182346 + RNA DEL G - - rs71212119 unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 70182347 70182347 + RNA DEL T - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 74622853 74622853 + RNA SNP G A A rs61748641 bycluster;byfrequency TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 88455022 88455022 + RNA SNP G A A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 88455089 88455089 + RNA SNP G A A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 88464491 88464491 + Missense_Mutation SNP T A A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 9 90746972 90746972 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 114953432 114953432 + RNA SNP G T T novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 153627003 153627003 + 5'UTR SNP C A A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155252868 155252868 + Silent SNP T A A rs1128420 unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155252868 155252868 + Silent SNP T A A rs1128420 unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155252868 155252868 + Silent SNP T A A rs1128420 unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155252987 155252988 + In_Frame_Ins INS - CAGCACCAC CAGCACCAC novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155252987 155252988 + In_Frame_Ins INS - CAGCACCAC CAGCACCAC novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155254706 155254706 + Missense_Mutation SNP C T T rs4612551 unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155254706 155254706 + Missense_Mutation SNP C T T rs4612551 unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155254735 155254735 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155254961 155254961 + Silent SNP C T T rs2691322 bycluster TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155255094 155255094 + 3'UTR SNP T C C rs189478274 by1000genomes TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 155255094 155255094 + 3'UTR SNP T C C rs189478274 by1000genomes TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 228267 228267 + Translation_Start_Site SNP G A A rs188588834 by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 229389 229390 + 5'Flank INS - TACCCC TACCCC novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 24334947 24334947 + IGR DEL A - - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 48155421 48155421 + 3'UTR SNP C T T novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu 37 X 64844726 64844727 + RNA DEL AG - - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 11 31086042 31086042 + Frame_Shift_Del DEL C - - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 14 22788632 22788632 + Intron SNP C T T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 18 74402256 74402256 + RNA SNP T C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 7 142206550 142206550 + Intron SNP C T T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 7 142247177 142247177 + Intron SNP G A A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 7 142326873 142326873 + Intron SNP C G G novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx Unknown 0 broad.mit.edu;ucsc.edu 37 7 2552830 2552830 + IGR SNP G A A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPB1 51733 broad.mit.edu 37 22 24891258 24891258 + 5'UTR SNP A G G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPB1 51733 broad.mit.edu 37 22 24898325 24898325 + Intron SNP G A A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPB1 51733 broad.mit.edu;hgsc.bcm.edu 37 22 24906778 24906778 + Silent SNP A A G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPB1 51733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24921682 24921682 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPB1 51733 hgsc.bcm.edu 37 22 24916410 24916410 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UPF0639 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 69989009 69989009 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF0639 0 broad.mit.edu 37 14 69967230 69967230 + Intron SNP C A A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPF0639 0 broad.mit.edu;ucsc.edu 37 14 69992827 69992827 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPF1 5976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18960913 18960913 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF1 5976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18974988 18974988 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 11985089 11985089 + Missense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 11998363 11998363 + Missense_Mutation SNP G G A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12009344 12009344 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12009405 12009405 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12070760 12070760 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12071445 12071445 + Silent SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C T T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPF3A 65110 broad.mit.edu 37 13 115051721 115051721 + Intron SNP G A A novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPF3A 65110 broad.mit.edu;hgsc.bcm.edu 37 13 115057088 115057088 + Intron SNP C C A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPF3A 65110 hgsc.bcm.edu 37 13 115067470 115067470 + Silent SNP A A G novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UPF3B 65109 hgsc.bcm.edu;ucsc.edu 37 X 118974623 118974623 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UPK3A 7380 broad.mit.edu 37 22 45683306 45683306 + Silent SNP A C C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPK3A 7380 hgsc.bcm.edu 37 22 45691552 45691553 + Frame_Shift_Ins INS - - C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPK3A 7380 hgsc.bcm.edu 37 22 45691552 45691553 + Frame_Shift_Ins INS - - C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPK3B 80761 broad.mit.edu;hgsc.bcm.edu 37 7 76140064 76140064 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPK3B 80761 hgsc.bcm.edu 37 7 76143372 76143372 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UPP2 151531 broad.mit.edu 37 2 158958486 158958486 + 5'UTR SNP T G G novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPP2 151531 broad.mit.edu 37 2 158992099 158992100 + 3'UTR INS - T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UPP2 151531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158971713 158971713 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UPP2 151531 hgsc.bcm.edu 37 2 158958551 158958551 + Splice_Site SNP G G A rs74924675 unknown TCGA-BP-4173-01A-02D-1366-10 TCGA-BP-4173-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UPRT 139596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 74517350 74517350 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UQCC 55245 hgsc.bcm.edu;ucsc.edu 37 20 33954433 33954433 + Intron SNP A A C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UQCRB 7381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 97244062 97244062 + Silent SNP T T A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UQCRC2 7385 hgsc.bcm.edu 37 16 21974117 21974117 + Missense_Mutation SNP C C T rs139500759 by1000genomes;alternate_allele TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UQCRC2 7385 hgsc.bcm.edu 37 16 21982911 21982911 + Silent SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UQCRC2 7385 hgsc.bcm.edu 37 16 21982911 21982911 + Silent SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UQCRFS1 7386 broad.mit.edu 37 19 29699033 29699033 + Missense_Mutation SNP T C C novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UQCRFS1 7386 broad.mit.edu 37 19 29699033 29699033 + Missense_Mutation SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UQCRFS1 7386 broad.mit.edu 37 19 29699033 29699033 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx URB1 9875 broad.mit.edu;hgsc.bcm.edu 37 21 33688961 33688961 + Silent SNP G G A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URB1 9875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33744827 33744827 + Silent SNP A A T novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URB1 9875 broad.mit.edu;ucsc.edu 37 21 33697561 33697561 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx URB2 9816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229773365 229773365 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URB2 9816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229773797 229773797 + Missense_Mutation SNP C C T rs141779194 unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URB2 9816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229773890 229773890 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URB2 9816 hgsc.bcm.edu;ucsc.edu 37 1 229773001 229773001 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID URGCP 55665 broad.mit.edu;hgsc.bcm.edu 37 7 43916855 43916855 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URGCP 55665 broad.mit.edu;hgsc.bcm.edu 37 7 43918173 43918173 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq URGCP 55665 hgsc.bcm.edu 37 7 43918276 43918276 + Silent SNP G G C rs144106376 unknown;alternate_allele TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID URM1 81605 broad.mit.edu;hgsc.bcm.edu 37 9 131151698 131151698 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UROC1 131669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 126216954 126216954 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USE1 55850 hgsc.bcm.edu 37 19 17326586 17326586 + Intron SNP G G A rs141487581 by1000genomes TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USF1 7391 broad.mit.edu 37 1 161009657 161009657 + 3'UTR SNP T C C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USF1 7391 hgsc.bcm.edu;ucsc.edu 37 1 161011524 161011524 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USF2 7392 broad.mit.edu 37 19 35770041 35770054 + Intron DEL GCTCCCTTGACCTC - - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 GCTCCCTTGACCTC GCTCCCTTGACCTC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USF2 7392 hgsc.bcm.edu;ucsc.edu 37 19 35761712 35761712 + Intron SNP T T A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH1C 10083 broad.mit.edu 37 11 17515855 17515855 + 3'UTR SNP G A A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USH1C 10083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17531374 17531374 + Silent SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH1C 10083 broad.mit.edu;ucsc.edu 37 11 17544964 17544964 + Splice_Site SNP A C C novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USH1C 10083 hgsc.bcm.edu 37 11 17523513 17523513 + Nonsense_Mutation SNP A A C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USH1C 10083 hgsc.bcm.edu;ucsc.edu 37 11 17523523 17523523 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USH1C 10083 hgsc.bcm.edu;ucsc.edu 37 11 17544782 17544782 + Silent SNP C C A novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USH1G 124590 broad.mit.edu 37 17 72919137 72919137 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USH2A 7399 broad.mit.edu;hgsc.bcm.edu 37 1 215799083 215799083 + 3'UTR SNP A A T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu 37 1 215820889 215820889 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu 37 1 216595423 216595423 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 215955404 215955404 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 215955490 215955490 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 215990344 215990344 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216019306 216019306 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216052254 216052254 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216166458 216166458 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216219777 216219777 + Silent SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216380760 216380760 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216405369 216405369 + Silent SNP T T C rs138484134 by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 broad.mit.edu;ucsc.edu 37 1 215848923 215848923 + Nonsense_Mutation SNP G T T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USH2A 7399 broad.mit.edu;ucsc.edu 37 1 215987118 215987118 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USH2A 7399 hgsc.bcm.edu 37 1 215813937 215813938 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 215823997 215823998 + Frame_Shift_Ins INS - - T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 216051167 216051168 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 216061915 216061915 + Silent SNP T T C novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 216373233 216373233 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 216465660 216465660 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 216595674 216595674 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USHBP1 83878 broad.mit.edu 37 19 17370531 17370531 + Missense_Mutation SNP G T T rs150046287 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USHBP1 83878 broad.mit.edu 37 19 17373404 17373404 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USHBP1 83878 broad.mit.edu 37 19 17374674 17374674 + Intron DEL A - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USHBP1 83878 broad.mit.edu 37 19 17374674 17374674 + Intron DEL A - - novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USHBP1 83878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17366335 17366335 + Silent SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USO1 8615 broad.mit.edu 37 4 76649083 76649084 + 5'Flank INS - A A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USO1 8615 hgsc.bcm.edu;ucsc.edu 37 4 76722353 76722353 + Missense_Mutation SNP G G A rs324726 bycluster;byfrequency;by1000genomes TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP10 9100 hgsc.bcm.edu 37 16 84773939 84773939 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP11 8237 hgsc.bcm.edu 37 X 47100845 47100845 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP12 219333 broad.mit.edu;hgsc.bcm.edu 37 13 27680064 27680064 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP13 8975 broad.mit.edu 37 3 179501956 179501956 + 3'UTR SNP G A A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP13 8975 broad.mit.edu 37 3 179501956 179501956 + 3'UTR SNP G A A novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP13 8975 broad.mit.edu 37 3 179506682 179506683 + 3'UTR INS - T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP13 8975 broad.mit.edu 37 3 179506683 179506683 + 3'UTR DEL T - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP13 8975 broad.mit.edu 37 3 179506683 179506683 + 3'UTR DEL T - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP13 8975 broad.mit.edu 37 3 179506683 179506683 + 3'UTR DEL T - - novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP15 9958 broad.mit.edu;hgsc.bcm.edu 37 12 62798002 62798002 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP15 9958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 62749239 62749239 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP15 9958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 62790158 62790158 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP15 9958 hgsc.bcm.edu 37 12 62777762 62777762 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP15 9958 hgsc.bcm.edu;ucsc.edu 37 12 62777931 62777931 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP16 10600 broad.mit.edu 37 21 30426525 30426525 + 3'UTR SNP T G G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP16 10600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30415852 30415852 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP17L2 377630 hgsc.bcm.edu 37 8 11995987 11995987 + Silent SNP G A A rs3988861 bycluster TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP17L2 377630 broad.mit.edu 37 8 11995803 11995803 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP18 11274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18643020 18643020 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP18 11274 hgsc.bcm.edu 37 22 18640560 18640560 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4354-01A-02D-1366-10 TCGA-BP-4354-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP18 11274 hgsc.bcm.edu 37 22 18640563 18640563 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP18 11274 hgsc.bcm.edu 37 22 18640565 18640565 + Silent SNP C C A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP18 11274 hgsc.bcm.edu 37 22 18640565 18640565 + Silent SNP C C T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP18 11274 hgsc.bcm.edu 37 22 18655999 18655999 + Missense_Mutation SNP A A G rs61731585 bycluster;byfrequency TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP20 10868 hgsc.bcm.edu 37 9 132636033 132636033 + Splice_Region SNP T T C rs4415421 bycluster;by1000genomes TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP20 10868 hgsc.bcm.edu 37 9 132636883 132636883 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP20 10868 hgsc.bcm.edu;ucsc.edu 37 9 132636882 132636883 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP21 27005 hgsc.bcm.edu 37 1 161134913 161134913 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP21 27005 hgsc.bcm.edu;ucsc.edu 37 1 161134659 161134660 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP22 23326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20911265 20911265 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP22 23326 broad.mit.edu;ucsc.edu 37 17 20931913 20931913 + Silent SNP G A A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP24 23358 broad.mit.edu 37 1 55534414 55534415 + 3'UTR DEL GT - - rs146551835 bycluster;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP24 23358 broad.mit.edu 37 1 55534571 55534571 + 3'UTR SNP C G G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP24 23358 broad.mit.edu;hgsc.bcm.edu 37 1 55642117 55642117 + Splice_Site SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55619805 55619805 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55622657 55622657 + Silent SNP C C T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55638068 55638068 + Silent SNP G G A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55642115 55642115 + Silent SNP A A T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq USP24 23358 hgsc.bcm.edu 37 1 55549489 55549489 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP24 23358 hgsc.bcm.edu;ucsc.edu 37 1 55547097 55547097 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID USP25 29761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 17197352 17197352 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP25 29761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 17205757 17205757 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP25 29761 hgsc.bcm.edu;ucsc.edu 37 21 17183448 17183448 + Splice_Region SNP T T A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP25 29761 hgsc.bcm.edu;ucsc.edu 37 21 17246743 17246743 + Silent SNP C C T novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP26 83844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132160271 132160271 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP26 83844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132161721 132161721 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP26 83844 hgsc.bcm.edu;ucsc.edu 37 X 132160053 132160053 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP26 83844 hgsc.bcm.edu;ucsc.edu 37 X 132161106 132161106 + Silent SNP G G A rs139383150 unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP28 57646 broad.mit.edu;ucsc.edu 37 11 113701632 113701632 + Silent SNP C A A novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP28 57646 hgsc.bcm.edu 37 11 113684670 113684670 + Missense_Mutation SNP C C A rs137875806 unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID USP28 57646 hgsc.bcm.edu;ucsc.edu 37 11 113694390 113694391 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP2 9099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119243611 119243611 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP2 9099 broad.mit.edu;ucsc.edu 37 11 119229962 119229962 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP2 9099 hgsc.bcm.edu 37 11 119228549 119228549 + Splice_Region SNP A A T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP2 9099 hgsc.bcm.edu;ucsc.edu 37 11 119229755 119229755 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP29 57663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57640818 57640818 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP29 57663 broad.mit.edu;ucsc.edu 37 19 57642541 57642541 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP29 57663 hgsc.bcm.edu;ucsc.edu 37 19 57642738 57642738 + Silent SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP29 57663 hgsc.bcm.edu;ucsc.edu 37 19 57642739 57642739 + Missense_Mutation SNP G G T rs138755535 byfrequency;alternate_allele TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP29 57663 hgsc.bcm.edu;ucsc.edu 37 19 57642746 57642746 + Silent SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP30 84749 broad.mit.edu 37 12 109490426 109490427 + 5'UTR INS - CGGCGG CGGCGG novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP31 57478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 23079995 23079995 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP32 84669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58282987 58282987 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP32 84669 hgsc.bcm.edu 37 17 58329733 58329733 + Splice_Region SNP C C A novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP32 84669 hgsc.bcm.edu 37 17 58348760 58348760 + Silent SNP C C T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP32 84669 hgsc.bcm.edu;ucsc.edu 37 17 58343414 58343414 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP33 23032 broad.mit.edu 37 1 78162869 78162869 + 3'UTR SNP T C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP33 23032 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78195568 78195568 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP33 23032 hgsc.bcm.edu;ucsc.edu 37 1 78167136 78167136 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP33 23032 hgsc.bcm.edu;ucsc.edu 37 1 78183671 78183671 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61431456 61431456 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61450407 61450407 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61522139 61522139 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61566797 61566797 + Silent SNP A A G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61571006 61571006 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61575328 61575328 + Silent SNP G G A novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP34 9736 hgsc.bcm.edu 37 2 61417437 61417437 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP34 9736 hgsc.bcm.edu 37 2 61463289 61463289 + Splice_Region SNP T T A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP34 9736 hgsc.bcm.edu 37 2 61571101 61571101 + Silent SNP T T C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP34 9736 hgsc.bcm.edu 37 2 61571101 61571101 + Silent SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP34 9736 hgsc.bcm.edu;ucsc.edu 37 2 61441707 61441707 + Silent SNP G G A novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP34 9736 hgsc.bcm.edu;ucsc.edu 37 2 61454297 61454297 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP35 57558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77919916 77919916 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP35 57558 hgsc.bcm.edu 37 11 77921393 77921402 + Frame_Shift_Del DEL TGCTGCTCCG TGCTGCTCCG - novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 TGCTGCTCCG TGCTGCTCCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP35 57558 hgsc.bcm.edu;ucsc.edu 37 11 77921086 77921086 + Nonsense_Mutation SNP C C T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP36 57602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76795062 76795062 + Silent SNP A A C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP36 57602 hgsc.bcm.edu 37 17 76810621 76810621 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP36 57602 hgsc.bcm.edu;ucsc.edu 37 17 76824985 76824985 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP37 57695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219423354 219423354 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP37 57695 broad.mit.edu;ucsc.edu 37 2 219353073 219353073 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP37 57695 hgsc.bcm.edu 37 2 219330750 219330750 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP38 84640 broad.mit.edu;hgsc.bcm.edu 37 4 144106648 144106648 + Silent SNP G G A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP39 10713 hgsc.bcm.edu;ucsc.edu 37 2 85866457 85866457 + Silent SNP C C T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP40 55230 broad.mit.edu 37 2 234398195 234398196 + 5'UTR INS - A A rs112451786 bycluster;by1000genomes TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234429716 234429716 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234431845 234431845 + Silent SNP A A G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234431973 234431973 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234468567 234468567 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP40 55230 hgsc.bcm.edu 37 2 234429739 234429740 + In_Frame_Ins INS - - TTC rs141501074 bycluster;by1000genomes TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP40 55230 hgsc.bcm.edu 37 2 234471371 234471371 + Intron SNP A A C novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP40 55230 hgsc.bcm.edu;ucsc.edu 37 2 234428249 234428249 + Intron SNP T T C novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP42 84132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6154957 6154957 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP42 84132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6190120 6190120 + Silent SNP C C T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP43 124739 broad.mit.edu;ucsc.edu 37 17 9559806 9559806 + Silent SNP A G G novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP43 124739 hgsc.bcm.edu 37 17 9604523 9604523 + Silent SNP C C A novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP43 124739 hgsc.bcm.edu 37 17 9631914 9631916 + In_Frame_Del DEL GGG GGG - novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 GGG GGG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP44 84101 broad.mit.edu 37 12 95911790 95911790 + 3'UTR DEL A - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP44 84101 broad.mit.edu 37 12 95911790 95911790 + 3'UTR DEL A - - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP45 85015 hgsc.bcm.edu 37 6 99924089 99924089 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP45 85015 hgsc.bcm.edu;ucsc.edu 37 6 99912577 99912577 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP46 64854 broad.mit.edu 37 4 53462531 53462531 + 3'UTR DEL T - - novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP4 7375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49337921 49337921 + Silent SNP G G A rs142071789 unknown;alternate_allele TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP4 7375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49373006 49373006 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP4 7375 hgsc.bcm.edu;ucsc.edu 37 3 49321434 49321434 + Silent SNP T T A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP47 55031 broad.mit.edu 37 11 11977960 11977961 + 3'UTR INS - A A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP47 55031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 11964635 11964635 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP48 84196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22032286 22032286 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP48 84196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22079531 22079531 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP48 84196 broad.mit.edu;ucsc.edu 37 1 22032266 22032266 + Missense_Mutation SNP C G G novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP49 25862 broad.mit.edu 37 6 41773626 41773626 + Nonsense_Mutation SNP G A A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP50 373509 broad.mit.edu;hgsc.bcm.edu 37 15 50833303 50833303 + Silent SNP G G A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP50 373509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50835798 50835798 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55513238 55513238 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55513642 55513642 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55514285 55514285 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55514571 55514571 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP51 158880 hgsc.bcm.edu 37 X 55513337 55513337 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP53 54532 broad.mit.edu 37 4 120214394 120214394 + 3'UTR SNP A G G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP53 54532 broad.mit.edu;ucsc.edu 37 4 120182905 120182905 + Silent SNP T C C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP53 54532 hgsc.bcm.edu;ucsc.edu 37 4 120192821 120192821 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP53 54532 hgsc.bcm.edu;ucsc.edu 37 4 120214163 120214163 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP54 159195 hgsc.bcm.edu;ucsc.edu 37 10 75258858 75258858 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP54 159195 hgsc.bcm.edu;ucsc.edu 37 10 75294440 75294440 + Silent SNP G G T novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP5 8078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6969582 6969582 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP6 9098 broad.mit.edu 37 17 5036864 5036864 + Intron SNP C T T rs76269146 bycluster TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP6 9098 broad.mit.edu 37 17 5037336 5037336 + Intron SNP C T T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP6 9098 hgsc.bcm.edu 37 17 5033964 5033964 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6 9098 hgsc.bcm.edu 37 17 5036761 5036761 + Silent SNP A A C rs112535740 bycluster TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6 9098 hgsc.bcm.edu 37 17 5036784 5036784 + Missense_Mutation SNP C C T rs78476887 bycluster TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6 9098 hgsc.bcm.edu 37 17 5038559 5038559 + Silent SNP C C A rs117996405 byfrequency TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6 9098 hgsc.bcm.edu 37 17 5066236 5066236 + Silent SNP C C A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6 9098 hgsc.bcm.edu;ucsc.edu 37 17 5048736 5048736 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6NL 9712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 11543102 11543102 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP6NL 9712 hgsc.bcm.edu 37 10 11505110 11505110 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP6NL 9712 hgsc.bcm.edu;ucsc.edu 37 10 11504703 11504703 + Missense_Mutation SNP T T C novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP7 7874 broad.mit.edu 37 16 8987742 8987742 + 3'UTR SNP A G G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP7 7874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 9010986 9010986 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP7 7874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 9012898 9012898 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP8 9101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50763851 50763851 + Silent SNP A A G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP8 9101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50791105 50791105 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP9X 8239 broad.mit.edu 37 X 40982835 40982835 + 5'UTR SNP C A A novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx USP9X 8239 broad.mit.edu;hgsc.bcm.edu 37 X 41088595 41088595 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP9X 8239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41091721 41091721 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP9X 8239 hgsc.bcm.edu 37 X 40949758 40949758 + Intron SNP G G A novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP9X 8239 hgsc.bcm.edu 37 X 40949765 40949765 + Intron SNP C C T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP9X 8239 hgsc.bcm.edu 37 X 40958731 40958731 + Intron SNP T T G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP9X 8239 hgsc.bcm.edu 37 X 41025293 41025293 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP9X 8239 hgsc.bcm.edu 37 X 41047253 41047253 + Silent SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP9X 8239 hgsc.bcm.edu;ucsc.edu 37 X 41025335 41025335 + Silent SNP A A G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP9X 8239 hgsc.bcm.edu;ucsc.edu 37 X 41077774 41077774 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USP9Y 8287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 14850172 14850172 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq USP9Y 8287 hgsc.bcm.edu;ucsc.edu 37 Y 14952324 14952324 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID USPL1 10208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 31232080 31232081 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTP14A 10813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129045756 129045756 + Silent SNP A A T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTP14A 10813 hgsc.bcm.edu;ucsc.edu 37 X 129054543 129054543 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UTP15 84135 broad.mit.edu;ucsc.edu 37 5 72864335 72864335 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UTP18 51096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 49340732 49340732 + Missense_Mutation SNP A A G novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTP23 84294 hgsc.bcm.edu;ucsc.edu 37 8 117783987 117783987 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UTP3 57050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71555786 71555786 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTP6 55813 broad.mit.edu 37 17 30207444 30207445 + Intron INS - A A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UTP6 55813 broad.mit.edu 37 17 30207445 30207445 + Intron DEL A - - novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UTP6 55813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30213014 30213014 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTP6 55813 hgsc.bcm.edu;ucsc.edu 37 17 30219821 30219821 + Intron SNP A A C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 144768773 144768773 + Silent SNP A A T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 144780343 144780343 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 144806603 144806603 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 144812074 144812074 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 145103091 145103091 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTRN 7402 broad.mit.edu;ucsc.edu 37 6 144811221 144811221 + Silent SNP G A A novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UTS2 10911 hgsc.bcm.edu 37 1 7912944 7912944 + Intron SNP G G A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UTS2 10911 hgsc.bcm.edu 37 1 7913400 7913400 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UTY 7404 broad.mit.edu 37 Y 15361721 15361721 + 3'UTR SNP A G G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UTY 7404 broad.mit.edu 37 Y 15409556 15409556 + Intron SNP A T T novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx UTY 7404 hgsc.bcm.edu 37 Y 15467194 15467195 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UVRAG 7405 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 75852292 75852292 + Silent SNP A A T novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq UXS1 80146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 106717553 106717553 + Silent SNP C C A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq UXS1 80146 hgsc.bcm.edu;ucsc.edu 37 2 106729163 106729163 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID UXT 8409 broad.mit.edu 37 X 47518230 47518230 + Nonsense_Mutation SNP G A A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAC14 55697 broad.mit.edu 37 16 70834811 70834811 + Translation_Start_Site SNP G T T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAC14 55697 broad.mit.edu 37 16 70834811 70834811 + Translation_Start_Site SNP G T T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAC14 55697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 70816984 70816984 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAMP1 6843 broad.mit.edu 37 12 6572261 6572261 + 3'UTR SNP A G G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAMP1 6843 broad.mit.edu 37 12 6573828 6573828 + Intron DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAMP2 6844 hgsc.bcm.edu;ucsc.edu 37 17 8064857 8064857 + Intron SNP C C G novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAMP3 9341 broad.mit.edu 37 1 7831384 7831384 + 5'UTR SNP C A A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAMP5 10791 broad.mit.edu 37 2 85820299 85820299 + 3'UTR SNP A T T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAMP8 8673 broad.mit.edu 37 2 85809036 85809036 + 3'UTR SNP A G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VANGL1 81839 broad.mit.edu;hgsc.bcm.edu 37 1 116226627 116226627 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VANGL2 57216 broad.mit.edu 37 1 160395201 160395201 + 3'UTR SNP G A A novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VANGL2 57216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160385972 160385972 + Silent SNP G G C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VANGL2 57216 hgsc.bcm.edu 37 1 160389236 160389236 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4765-01A-01D-1366-10 TCGA-BP-4765-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VAPB 9217 broad.mit.edu 37 20 57020342 57020342 + 3'UTR DEL C - - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAPB 9217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57015985 57015985 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VARS2 57176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30884693 30884693 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VARS2 57176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 30884694 30884694 + Silent SNP T T C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VARS 7407 broad.mit.edu 37 6 31745339 31745339 + 3'UTR SNP G A A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VARS 7407 broad.mit.edu 37 6 31752484 31752485 + Frame_Shift_Del DEL GA - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VARS 7407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31752061 31752061 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VASP 7408 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46024608 46024608 + Silent SNP T T G novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VASP 7408 hgsc.bcm.edu;ucsc.edu 37 19 46029200 46029200 + Intron SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAT1 10493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41168133 41168133 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAT1 10493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41169909 41169909 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAV1 7409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6828475 6828475 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAV1 7409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6828883 6828883 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAV1 7409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6853050 6853050 + Silent SNP C C T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VAV1 7409 hgsc.bcm.edu 37 19 6828447 6828447 + Silent SNP G G A novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VAV2 7410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136642527 136642527 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAV2 7410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136649535 136649535 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAV2 7410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136674238 136674238 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VAV2 7410 hgsc.bcm.edu 37 9 136633699 136633699 + Missense_Mutation SNP G G C rs61751477 bycluster;byfrequency;by1000genomes TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VAX1 11023 broad.mit.edu 37 10 118893391 118893391 + 3'UTR SNP G T T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX1 11023 broad.mit.edu 37 10 118897631 118897632 + 5'UTR DEL GC - - rs71677026 unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX1 11023 broad.mit.edu 37 10 118897631 118897632 + 5'UTR DEL GC - - rs71677026 unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX1 11023 broad.mit.edu 37 10 118897631 118897632 + 5'UTR DEL GC - - rs71677026 unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX1 11023 broad.mit.edu 37 10 118897632 118897632 + 5'UTR DEL C - - rs148359585 unknown;alternate_allele TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX1 11023 broad.mit.edu 37 10 118897632 118897632 + 5'UTR DEL C - - rs148359585 unknown;alternate_allele TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX1 11023 broad.mit.edu 37 10 118897632 118897632 + 5'UTR DEL C - - rs148359585 unknown;alternate_allele TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VAX2 25806 broad.mit.edu 37 2 71160067 71160067 + Silent SNP G A A novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VBP1 7411 hgsc.bcm.edu 37 X 154455587 154455587 + Splice_Region SNP G G C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCAM1 7412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 101200121 101200121 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCAN 1462 broad.mit.edu;hgsc.bcm.edu 37 5 82834030 82834030 + Silent SNP T T A novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCAN 1462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82815673 82815673 + Silent SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VCAN 1462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82815685 82815685 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCAN 1462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82834255 82834255 + Silent SNP T T C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCAN 1462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82835015 82835015 + Nonsense_Mutation SNP G G T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VCAN 1462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82836753 82836753 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCAN 1462 hgsc.bcm.edu;ucsc.edu 37 5 82789433 82789433 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCAN 1462 hgsc.bcm.edu;ucsc.edu 37 5 82834378 82834378 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID VCAN 1462 hgsc.bcm.edu;ucsc.edu 37 5 82837110 82837110 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCL 7414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75860838 75860838 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCL 7414 hgsc.bcm.edu 37 10 75854046 75854046 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCP 7415 broad.mit.edu;ucsc.edu 37 9 35068351 35068351 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VCP 7415 hgsc.bcm.edu 37 9 35061687 35061687 + Splice_Site SNP C C G novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCP 7415 hgsc.bcm.edu;ucsc.edu 37 9 35059494 35059494 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCP 7415 hgsc.bcm.edu;ucsc.edu 37 9 35062023 35062023 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCPIP1 80124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67546928 67546928 + Silent SNP T T C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCPIP1 80124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67578932 67578932 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCPIP1 80124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67578933 67578933 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCPIP1 80124 hgsc.bcm.edu 37 8 67576661 67576661 + Silent SNP T T G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VCPIP1 80124 hgsc.bcm.edu;ucsc.edu 37 8 67546975 67546980 + In_Frame_Del DEL CAACTT CAACTT - novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 CAACTT CAACTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX2 51480 hgsc.bcm.edu 37 X 8138165 8138165 + Missense_Mutation SNP C C G rs1058237 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX2 51480 hgsc.bcm.edu 37 X 8138170 8138170 + Missense_Mutation SNP C C G rs75657421 byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX2 51480 hgsc.bcm.edu 37 X 8138170 8138170 + Missense_Mutation SNP C C G rs75657421 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX2 51480 hgsc.bcm.edu 37 X 8138171 8138171 + Missense_Mutation SNP T T C rs78723459 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX2 51480 hgsc.bcm.edu 37 X 8138182 8138182 + Missense_Mutation SNP A A G rs41305169 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX 26609 broad.mit.edu 37 X 7811214 7811214 + 5'UTR SNP C T T rs79022657 unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VCX 26609 broad.mit.edu 37 X 7812155 7812155 + 3'UTR SNP A T T rs1071701 unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VCX 26609 hgsc.bcm.edu 37 X 7811830 7811859 + In_Frame_Del DEL GAACCACTGAGTCAGGAGAGCGAGGTGGAA GAACCACTGAGTCAGGAGAGCGAGGTGGAA - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 GAACCACTGAGTCAGGAGAGCGAGGTGGAA GAACCACTGAGTCAGGAGAGCGAGGTGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX3A 51481 broad.mit.edu 37 X 6451688 6451688 + 3'UTR SNP T A A rs1071701 unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VCX3B 425054 broad.mit.edu 37 X 8433401 8433401 + 5'UTR SNP T C C rs78428047 unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VCX3B 425054 broad.mit.edu 37 X 8434522 8434522 + 3'UTR SNP T A A rs112774168 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VCX3B 425054 hgsc.bcm.edu 37 X 8434287 8434316 + In_Frame_Del DEL GAACCACTGAGTCAGGAGAGCGAGATGGAA GAACCACTGAGTCAGGAGAGCGAGATGGAA - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 GAACCACTGAGTCAGGAGAGCGAGATGGAA GAACCACTGAGTCAGGAGAGCGAGATGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VCX3B 425054 hgsc.bcm.edu 37 X 8434347 8434376 + In_Frame_Del DEL GAACCACTGAGTCAGGAGAGCGAGATGGAA GAACCACTGAGTCAGGAGAGCGAGATGGAA - novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 GAACCACTGAGTCAGGAGAGCGAGATGGAA GAACCACTGAGTCAGGAGAGCGAGATGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VDR 7421 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48272814 48272814 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEGFA 7422 broad.mit.edu 37 6 43742101 43742101 + Silent SNP A G G novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VENTX 27287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 135053527 135053527 + Missense_Mutation SNP C C A rs150065198 byfrequency;alternate_allele TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VENTX 27287 hgsc.bcm.edu 37 10 135053527 135053527 + Missense_Mutation SNP C C T rs150065198 byfrequency TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VENTXP7 391518 broad.mit.edu 37 3 21447901 21447902 + RNA INS - CC CC rs112237068 bycluster;by1000genomes TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VEPH1 79674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 157031465 157031465 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEPH1 79674 hgsc.bcm.edu;ucsc.edu 37 3 157177734 157177734 + Intron SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VEZF1 7716 broad.mit.edu;hgsc.bcm.edu 37 17 56058037 56058037 + Silent SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEZF1 7716 broad.mit.edu;hgsc.bcm.edu 37 17 56060482 56060482 + Silent SNP C C T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEZT 55591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95645766 95645766 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEZT 55591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95676229 95676229 + Silent SNP A A G novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEZT 55591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95694240 95694240 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VEZT 55591 hgsc.bcm.edu;ucsc.edu 37 12 95668544 95668544 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VGLL1 51442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135638638 135638638 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VGLL2 245806 hgsc.bcm.edu;ucsc.edu 37 6 117589513 117589514 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VGLL3 389136 hgsc.bcm.edu;ucsc.edu 37 3 87027696 87027696 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VGLL4 9686 broad.mit.edu 37 3 11685143 11685144 + Intron INS - A A rs34152653 unknown TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183714 10183720 + Frame_Shift_Del DEL CGTGCTG - - rs5030651 unknown;alternate_allele TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 CGTGCTG CGTGCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183715 10183716 + Frame_Shift_Del DEL GT - - novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 GT GT GT - GT GT Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Missense_Mutation SNP C G G rs5030826 unknown;alternate_allele TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Missense_Mutation SNP C T T rs5030826 unknown;alternate_allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C A A rs5030826 unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C A A rs5030826 unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C A A rs5030826 unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183734 10183734 + Nonsense_Mutation SNP C A A novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183739 10183739 + Nonsense_Mutation SNP G T T rs5030802 unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183752 10183752 + Missense_Mutation SNP T A A rs5030803 unknown;alternate_allele TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183752 10183752 + Missense_Mutation SNP T A A rs5030803 unknown;alternate_allele TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183794 10183794 + Nonsense_Mutation SNP G A A rs119103277 unknown;alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454;Illumina Miseq;PacBio Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183829 10183830 + Frame_Shift_Del DEL AC - - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183864 10183865 + Frame_Shift_Ins INS - A A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10183872 10183872 + Splice_Site SNP G C C novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu 37 3 10191470 10191470 + Splice_Site SNP G A A rs5030817 unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183734 10183734 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183747 10183747 + Silent SNP C C A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183748 10183748 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183753 10183753 + Silent SNP C C T novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183763 10183763 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183763 10183763 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183788 10183788 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183794 10183794 + Nonsense_Mutation SNP G G A rs119103277 unknown;alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T C rs5030807 bycluster TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183867 10183867 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454;Illumina Miseq;PacBio Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10188296 10188297 + Frame_Shift_Ins INS - - TTTT novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10191532 10191532 + Nonsense_Mutation SNP C C A rs5030835 unknown;alternate_allele TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10191648 10191648 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10183776 10183776 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454;Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10183794 10183794 + Missense_Mutation SNP G G T rs119103277 unknown;alternate_allele TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10183858 10183859 + Frame_Shift_Ins INS - - CA novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10183863 10183863 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188197 10188197 + Splice_Site SNP G G T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188197 10188197 + Splice_Site SNP G G T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188200 10188200 + Missense_Mutation SNP C C A rs5030811 bycluster;alternate_allele TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188200 10188200 + Missense_Mutation SNP C C A rs5030811 bycluster;alternate_allele TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188202 10188202 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188203 10188205 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 CTT CTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188204 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188204 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188205 + Frame_Shift_Del DEL TT TT - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 TT TT TT - TT TT Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188205 10188205 + Silent SNP T T C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188208 10188208 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188218 10188218 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188218 10188218 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188224 10188224 + Frame_Shift_Del DEL G G - novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188227 10188227 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188240 10188240 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188240 10188240 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188245 10188245 + Missense_Mutation SNP G G T rs104893830 bycluster;alternate_allele TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188246 10188246 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188248 10188248 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188248 10188248 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188254 10188254 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188260 10188260 + Frame_Shift_Del DEL T T - novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188263 10188263 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188268 10188269 + Frame_Shift_Ins INS - - C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188287 10188287 + Frame_Shift_Del DEL G G - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188290 10188290 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188294 10188295 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188299 10188306 + Frame_Shift_Del DEL TTTGCCAA TTTGCCAA - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 TTTGCCAA TTTGCCAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188308 10188308 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188315 10188315 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188321 10188321 + Splice_Site SNP G G T rs5030814 bycluster;alternate_allele TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188321 10188321 + Splice_Site SNP G G T rs5030814 bycluster;alternate_allele TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191469 10191469 + Splice_Site SNP A A G rs5030816 unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191479 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191479 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191480 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191480 10191480 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191480 10191480 + Missense_Mutation SNP T T C rs121913346 unknown;alternate_allele TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191480 10191480 + Missense_Mutation SNP T T C rs121913346 unknown;alternate_allele TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191481 10191481 + Silent SNP G G C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191482 10191482 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191482 10191482 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191485 10191485 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191488 10191488 + Nonsense_Mutation SNP C C T rs5030818 bycluster TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191488 10191488 + Nonsense_Mutation SNP C C T rs5030818 bycluster TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191491 10191491 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191492 10191492 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191499 10191499 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191501 10191501 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191507 10191507 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191508 10191511 + Frame_Shift_Del DEL GAGC GAGC - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 GAGC GAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191513 10191513 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191513 10191513 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191513 10191513 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191527 10191527 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191528 10191529 + Frame_Shift_Ins INS - - TT novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191536 10191536 + Nonsense_Mutation SNP A A T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191540 10191541 + Frame_Shift_Ins INS - - G novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191543 10191546 + Frame_Shift_Del DEL ACAT ACAT - novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 ACAT ACAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191558 10191558 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191563 10191563 + Nonsense_Mutation SNP G G T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191569 10191569 + Frame_Shift_Del DEL C C - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191570 10191570 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191570 10191570 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191571 10191571 + Silent SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191572 10191572 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191572 10191572 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191590 10191590 + Nonsense_Mutation SNP C C T rs5030825 unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C C T C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191593 10191593 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191611 10191612 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191622 10191623 + Frame_Shift_Ins INS - - A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 broad.mit.edu;ucsc.edu 37 3 10183745 10183746 + Frame_Shift_Ins INS - CC CC novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - - CC - - Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10183752 10183752 + Missense_Mutation SNP T A A rs5030803 unknown;alternate_allele TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Miseq Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10183763 10183763 + Missense_Mutation SNP A G G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10183787 10183787 + Frame_Shift_Del DEL C - - novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188200 10188200 + Missense_Mutation SNP C T T rs5030811 bycluster TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188215 10188215 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188290 10188290 + Nonsense_Mutation SNP C T T novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188309 10188309 + Missense_Mutation SNP T A A novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188309 10188309 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188309 10188309 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188321 10188321 + Splice_Site SNP G C C rs5030814 bycluster TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188322 10188322 + Splice_Site SNP T C C rs5030815 bycluster TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191469 10191469 + Splice_Site SNP A G G rs5030816 unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191470 10191470 + Splice_Site SNP G C C rs5030817 unknown;alternate_allele TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191470 10191470 + Splice_Site SNP G T T rs5030817 unknown;alternate_allele TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191492 10191492 + Missense_Mutation SNP G T T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191499 10191499 + Frame_Shift_Del DEL G - - novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191570 10191570 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T T G T T Unknown Valid Somatic Phase_I Capture PGM Illumina GAIIx VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191642 10191643 + Frame_Shift_Del DEL GA - - novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 hgsc.bcm.edu 37 3 10183614 10183614 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4162-01A-02W-1382-10 TCGA-BP-4162-11A-01W-1244-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183646 10183646 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3451-01A-02W-1244-10 TCGA-AK-3451-10A-01W-1244-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183646 10183646 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183650 10183650 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5110-01A-01W-1475-10 TCGA-B0-5110-11A-01W-1475-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183650 10183650 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183653 10183653 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183659 10183659 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 C C C T C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183664 10183664 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5695-01A-11W-1584-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183665 10183665 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5107-01A-01W-1475-10 TCGA-B0-5107-11A-01W-1475-10 C C C T C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183665 10183665 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183665 10183665 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4636-01A-02W-1382-10 TCGA-CJ-4636-11A-01W-1244-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183709 10183712 + Frame_Shift_Del DEL CGGC CGGC - novel unknown TCGA-CJ-4892-01A-01W-1369-10 TCGA-CJ-4892-11A-01W-1370-10 CGGC CGGC CGGC - CGGC CGGC Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183710 10183710 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5200-01A-01D-2101-10 TCGA-BP-5200-11A-01W-1477-10 G G G - G G Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183725 10183725 + Missense_Mutation SNP C C T rs5030826 unknown;alternate_allele TCGA-BP-4759-01A-01W-1362-10 TCGA-BP-4759-11A-01W-1363-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C C A rs5030826 unknown TCGA-B0-4824-01A-01W-1359-10 TCGA-B0-4824-11A-01D-2279-10 C C C A C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C C A rs5030826 unknown TCGA-BP-4961-01A-01D-1392-10 TCGA-BP-4961-11A-01D-1392-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C C A rs5030826 unknown TCGA-CJ-4884-01A-01W-1369-10 TCGA-CJ-4884-11A-01W-1369-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C C A rs5030826 unknown TCGA-CZ-5455-01A-01W-1528-10 TCGA-CZ-5455-11A-01W-1528-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183729 10183730 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4798-01A-01W-1369-10 TCGA-BP-4798-11A-01W-1369-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183734 10183734 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01W-1359-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183734 10183734 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4765-01A-01W-1362-10 TCGA-BP-4765-11A-01W-1363-10 C C C A C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183734 10183734 + Nonsense_Mutation SNP C C A novel unknown TCGA-CW-5581-01A-02W-1584-10 TCGA-CW-5581-11A-01W-1585-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Miseq . . PacBio VHL 7428 hgsc.bcm.edu 37 3 10183735 10183735 + Frame_Shift_Del DEL G G - novel unknown TCGA-AK-3451-01A-02W-1244-10 TCGA-AK-3451-10A-01W-1244-10 G G G - G G Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183744 10183744 + Silent SNP C C T novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10183746 10183746 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3430-01A-01W-1244-10 TCGA-AK-3430-10A-01W-1244-10 C C C - C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183748 10183748 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4355-01A-01W-1362-10 TCGA-BP-4355-11A-01W-1363-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183748 10183748 + Nonsense_Mutation SNP C C T novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Miseq;PacBio Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10183749 10183750 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4833-01A-01W-1369-10 TCGA-B0-4833-11A-01W-1369-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183752 10183752 + Missense_Mutation SNP T T G rs5030803 unknown TCGA-B8-4621-01A-01D-2102-10 TCGA-B8-4621-10A-01W-1528-10 T T T G T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183755 10183755 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4816-01A-01W-1528-10 TCGA-B0-4816-11A-02W-1528-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183764 10183764 + Missense_Mutation SNP A A G rs5030804 unknown TCGA-BP-4342-01A-01W-1362-10 TCGA-BP-4342-11A-01W-1362-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183767 10183767 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10183767 10183767 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5550-01A-01W-1584-10 TCGA-B8-5550-10A-01W-1585-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Miseq . . PacBio VHL 7428 hgsc.bcm.edu 37 3 10183768 10183769 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-5699-01A-11W-1584-10 TCGA-B0-5699-11A-01W-1584-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183770 10183770 + Missense_Mutation SNP G G T rs5030805 unknown TCGA-CJ-4885-01A-01W-1369-10 TCGA-CJ-4885-11A-01W-1369-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183770 10183773 + Frame_Shift_Del DEL GTCC GTCC - novel unknown TCGA-B0-5699-01A-11W-1584-10 TCGA-B0-5699-11A-01W-1584-10 GTCC GTCC . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183771 10183771 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-4858-01A-01W-1369-10 TCGA-CZ-4858-11A-01W-1370-10 T T T G T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183776 10183776 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4710-01A-01W-1528-10 TCGA-B0-4710-11A-02W-1528-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183776 10183776 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4974-01A-01D-1392-10 TCGA-BP-4974-11A-01D-1392-10 G G G C G G Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183781 10183782 + Frame_Shift_Ins INS - - T novel unknown TCGA-CZ-5466-01A-01W-1528-10 TCGA-CZ-5466-11A-01W-1529-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183793 10183793 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4166-01A-02W-1362-10 TCGA-BP-4166-11A-01W-1362-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183794 10183794 + Missense_Mutation SNP G G T rs119103277 unknown;alternate_allele TCGA-B0-5110-01A-01W-1475-10 TCGA-B0-5110-11A-01W-1475-10 G G G T G G Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183794 10183794 + Nonsense_Mutation SNP G G A rs119103277 unknown;alternate_allele TCGA-B0-4845-01A-01W-1359-10 TCGA-B0-4845-11A-01D-2279-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-B0-4714-01A-01W-1359-10 TCGA-B0-4714-11A-01D-2279-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-B0-4822-01A-01W-1359-10 TCGA-B0-4822-11A-01W-1359-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-B0-5104-01A-01W-1475-10 TCGA-B0-5104-11A-01W-1475-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-B8-5164-01A-01D-2099-10 TCGA-B8-5164-10A-01W-1476-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Miseq . . PacBio VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-BP-4162-01A-02W-1382-10 TCGA-BP-4162-11A-01W-1244-10 T T T A T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-BP-5008-01A-01D-1392-10 TCGA-BP-5008-11A-01D-1392-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T C rs5030807 bycluster TCGA-CJ-5679-01A-11W-1584-10 TCGA-CJ-5679-11A-01W-1585-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183800 10183800 + Missense_Mutation SNP A A T rs143985153 unknown;alternate_allele TCGA-CZ-5457-01A-01W-1528-10 TCGA-CZ-5457-11A-01W-1528-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Miseq . . PacBio VHL 7428 hgsc.bcm.edu 37 3 10183804 10183805 + Frame_Shift_Del DEL CG CG - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01W-1244-10 CG CG CG - CG CG Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183809 10183809 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5007-01A-01D-1392-10 TCGA-BP-5007-11A-01D-1392-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183811 10183811 + Nonsense_Mutation SNP G G T rs5030829 unknown TCGA-BP-5001-01A-01D-1392-10 TCGA-BP-5001-11A-01D-1392-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183815 10183815 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5116-01A-02W-1475-10 TCGA-B0-5116-11A-01W-1475-10 C C C A C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183817 10183817 + Nonsense_Mutation SNP C C T novel unknown TCGA-AK-3445-01A-02W-1359-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183817 10183817 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4161-01A-02W-1382-10 TCGA-BP-4161-11A-01W-1244-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183817 10183817 + Nonsense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01W-1369-10 TCGA-BP-4789-11A-01W-1369-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183820 10183820 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01W-1244-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183832 10183833 + Missense_Mutation DNP CT CT AA novel unknown TCGA-BP-4992-01A-01D-1392-10 TCGA-BP-4992-11A-01D-1392-10 CT CT CT AA CT CT Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183830 10183831 + Frame_Shift_Del DEL CG CG - novel unknown TCGA-BP-4992-01A-01D-1392-10 TCGA-BP-4992-11A-01D-1392-10 CG CG CG - CG CG Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183844 10183844 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3322-01A-01W-0898-10 TCGA-A3-3322-11A-01W-0898-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183850 10183850 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4340-01A-01W-1362-10 TCGA-BP-4340-11A-01W-1362-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183851 10183851 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G G C G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10183851 10183851 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4762-01A-02W-1362-10 TCGA-BP-4762-11A-01W-1363-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183857 10183857 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4690-01A-01W-1359-10 TCGA-B0-4690-11A-01W-1359-10 T T T A T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183863 10183863 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4703-01A-01W-1359-10 TCGA-B0-4703-11A-01W-1359-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183863 10183863 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5187-01A-01W-1477-10 TCGA-BP-5187-11A-01W-1477-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183863 10183863 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4872-01A-01W-1369-10 TCGA-CJ-4872-11A-01W-1369-10 G G G A G G Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183864 10183864 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5675-01A-11W-1584-10 TCGA-CJ-5675-11A-01W-1585-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183864 10183864 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5399-01A-01W-1528-10 TCGA-B0-5399-10A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183865 10183865 + Missense_Mutation SNP T T G rs104893824 bycluster TCGA-BP-4763-01A-01W-1362-10 TCGA-BP-4763-11A-01W-1363-10 T T T G T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183871 10183871 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4758-01A-01W-1362-10 TCGA-BP-4758-11A-01W-1363-10 G G G - G G Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183871 10183871 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4349-01A-01W-1362-10 TCGA-BP-4349-11A-01W-1362-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10183871 10183871 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4782-01A-02D-2099-10 TCGA-BP-4782-11A-01W-1476-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Miseq . . PacBio VHL 7428 hgsc.bcm.edu 37 3 10183872 10183872 + Splice_Site SNP G G A novel unknown TCGA-A3-3365-01A-01W-0898-10 TCGA-A3-3365-11A-01W-0898-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Miseq . . PacBio VHL 7428 hgsc.bcm.edu 37 3 10183873 10183873 + Splice_Site SNP T T C novel unknown TCGA-AK-3450-01A-02W-1359-10 TCGA-AK-3450-10A-01D-1361-10 T T T C T T Unknown Valid Somatic Phase_I Capture PacBio . . Illumina MiSeq VHL 7428 hgsc.bcm.edu 37 3 10188235 10188236 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu 37 3 10188235 10188236 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu 37 3 10188244 10188244 + Silent SNP G G T novel unknown TCGA-BP-4355-01A-01D-1366-10 TCGA-BP-4355-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu 37 3 10188262 10188262 + Missense_Mutation SNP A A T rs119103278 unknown;alternate_allele TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10191489 10191492 + Frame_Shift_Del DEL GATG GATG - novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 GATG GATG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10191509 10191509 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu 37 3 10191572 10191572 + Missense_Mutation SNP G G C novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188202 10188212 + Frame_Shift_Del DEL CCTTTGGCTCT CCTTTGGCTCT - novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 CCTTTGGCTCT CCTTTGGCTCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188204 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188219 + Frame_Shift_Del DEL TTTGGCTCTTCAGAGA TTTGGCTCTTCAGAGA - novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 TTTGGCTCTTCAGAGA TTTGGCTCTTCAGAGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188215 10188226 + In_Frame_Del DEL AGAGATGCAGGG AGAGATGCAGGG - novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 AGAGATGCAGGG AGAGATGCAGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188224 10188224 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188243 10188243 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188262 10188262 + Missense_Mutation SNP A A T rs119103278 unknown;alternate_allele TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188268 10188268 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188284 10188287 + Frame_Shift_Del DEL GACG GACG - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 GACG GACG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188289 10188289 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188297 10188297 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188315 10188315 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188319 10188344 + In_Frame_Del DEL AGGTACTGACGTTTTACTTTTTAAAA AGGTACTGACGTTTTACTTTTTAAAA - novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 AGGTACTGACGTTTTACTTTTTAAAA AGGTACTGACGTTTTACTTTTTAAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188320 10188324 + Frame_Shift_Del DEL GGTAC GGTAC - novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 GGTAC GGTAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188321 10188321 + Splice_Site SNP G G T rs5030814 bycluster;alternate_allele TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191470 10191470 + Splice_Site SNP G G A rs5030817 unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191479 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191507 10191507 + Missense_Mutation SNP G G A rs5030821 bycluster TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191520 10191520 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191522 10191525 + Frame_Shift_Del DEL CTGA CTGA - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 CTGA CTGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191540 10191540 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191542 10191543 + Frame_Shift_Del DEL GA GA - novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191557 10191558 + Frame_Shift_Ins INS - - T novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191558 10191558 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191572 10191572 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191645 10191646 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VHLL 391104 broad.mit.edu;hgsc.bcm.edu 37 1 156268547 156268547 + 3'UTR SNP G G C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VIL1 7429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219296898 219296898 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VIL1 7429 hgsc.bcm.edu 37 2 219301349 219301349 + Silent SNP G G A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VIL1 7429 hgsc.bcm.edu;ucsc.edu 37 2 219299338 219299339 + Frame_Shift_Ins INS - - T novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VILL 50853 broad.mit.edu 37 3 38043433 38043434 + Intron DEL TC - - novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VIP 7432 hgsc.bcm.edu;ucsc.edu 37 6 153073311 153073311 + 5'UTR SNP A A T novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VIPAR 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77916095 77916095 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VIPR1 7433 broad.mit.edu;hgsc.bcm.edu 37 3 42568970 42568970 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VIT 5212 hgsc.bcm.edu 37 2 37035867 37035867 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VLDLR 7436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2646492 2646492 + Missense_Mutation SNP A A C rs148487944 unknown;alternate_allele TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VLDLR 7436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2652826 2652826 + Missense_Mutation SNP T T A rs140801553 by1000genomes;alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VMO1 284013 broad.mit.edu 37 17 4689557 4689557 + Missense_Mutation SNP C T T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VN1R2 317701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53762110 53762110 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VN1R2 317701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53762116 53762116 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VN1R2 317701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53762336 53762336 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VN1R4 317703 hgsc.bcm.edu;ucsc.edu 37 19 53770021 53770021 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VNN1 8876 hgsc.bcm.edu 37 6 133015270 133015272 + In_Frame_Del DEL GTT GTT - novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 GTT GTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VNN2 8875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 133065439 133065439 + Silent SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPRBP 9730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51455599 51455599 + Silent SNP A A C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS11 55823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118940211 118940211 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS11 55823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118948939 118948939 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS11 55823 broad.mit.edu;ucsc.edu 37 11 118938631 118938631 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS13A 23230 broad.mit.edu 37 9 79999563 79999563 + Intron SNP T C C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS13A 23230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79936445 79936445 + Silent SNP C C T rs139782359 unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13A 23230 hgsc.bcm.edu 37 9 79910474 79910474 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13A 23230 hgsc.bcm.edu 37 9 79933403 79933403 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13A 23230 hgsc.bcm.edu;ucsc.edu 37 9 79897064 79897064 + Missense_Mutation SNP T T G novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13A 23230 hgsc.bcm.edu;ucsc.edu 37 9 79908261 79908261 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13A 23230 hgsc.bcm.edu;ucsc.edu 37 9 79910543 79910543 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13B 157680 broad.mit.edu;hgsc.bcm.edu 37 8 100847774 100847774 + Silent SNP A A G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100148945 100148945 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100515083 100515083 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100533198 100533198 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100711812 100711812 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100847487 100847487 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100887766 100887766 + Missense_Mutation SNP G G T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq VPS13B 157680 hgsc.bcm.edu 37 8 100133693 100133693 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID VPS13B 157680 hgsc.bcm.edu 37 8 100155297 100155297 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID VPS13B 157680 hgsc.bcm.edu 37 8 100832149 100832149 + Silent SNP G G A novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID VPS13B 157680 hgsc.bcm.edu;ucsc.edu 37 8 100479735 100479735 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13B 157680 hgsc.bcm.edu;ucsc.edu 37 8 100514007 100514007 + Silent SNP T T G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID VPS13B 157680 hgsc.bcm.edu;ucsc.edu 37 8 100871685 100871685 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID VPS13C 54832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62214721 62214721 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13C 54832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62241747 62241747 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13C 54832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62254726 62254726 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13C 54832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62257054 62257055 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13C 54832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62352506 62352506 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13C 54832 hgsc.bcm.edu 37 15 62238606 62238606 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13C 54832 hgsc.bcm.edu 37 15 62243164 62243164 + Silent SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13C 54832 hgsc.bcm.edu;ucsc.edu 37 15 62173973 62173973 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13D 55187 broad.mit.edu 37 1 12396026 12396026 + Intron SNP G C C novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS13D 55187 broad.mit.edu 37 1 12396027 12396027 + Intron SNP T A A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS13D 55187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12336481 12336481 + Missense_Mutation SNP C C T rs41279448 bycluster;byfrequency;by1000genomes TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13D 55187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12408985 12408985 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13D 55187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12409404 12409404 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13D 55187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12423192 12423192 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13D 55187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12566928 12566928 + Silent SNP T T A novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS13D 55187 broad.mit.edu;ucsc.edu 37 1 12321995 12321995 + Silent SNP G T T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS13D 55187 hgsc.bcm.edu 37 1 12409403 12409403 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13D 55187 hgsc.bcm.edu;ucsc.edu 37 1 12401915 12401915 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS13D 55187 hgsc.bcm.edu;ucsc.edu 37 1 12403073 12403073 + Silent SNP C C T novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS16 64601 hgsc.bcm.edu;ucsc.edu 37 20 2844667 2844667 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS16 64601 hgsc.bcm.edu;ucsc.edu 37 20 2844761 2844761 + Intron SNP G G C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS18 57617 broad.mit.edu 37 15 41191988 41191988 + Silent SNP A C C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS18 57617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41188258 41188258 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS18 57617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41192166 41192166 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS18 57617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41194909 41194909 + Silent SNP G G T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS24 0 broad.mit.edu 37 2 86732851 86732851 + 3'UTR SNP G T T novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS25 84313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40925522 40925522 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS25 84313 hgsc.bcm.edu 37 17 40925801 40925801 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS26B 112936 hgsc.bcm.edu 37 11 134095128 134095128 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS28 51160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145649316 145649316 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS29 51699 broad.mit.edu 37 12 110939747 110939747 + Intron SNP G C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS35 55737 broad.mit.edu 37 16 46694732 46694733 + Intron INS - AA AA rs33973421 unknown;alternate_allele TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS35 55737 broad.mit.edu 37 16 46694732 46694733 + Intron INS - A A rs33973421 unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS35 55737 broad.mit.edu;hgsc.bcm.edu 37 16 46694354 46694354 + 3'UTR SNP T T G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS35 55737 broad.mit.edu;hgsc.bcm.edu 37 16 46717480 46717480 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS36 51028 hgsc.bcm.edu 37 13 52997786 52997786 + Intron SNP T T C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS37A 137492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17125809 17125809 + Missense_Mutation SNP T T G novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS37A 137492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17137538 17137538 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS37A 137492 hgsc.bcm.edu;ucsc.edu 37 8 17143942 17143942 + Splice_Region SNP T T A novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VPS37C 55048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60899492 60899492 + Silent SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS39 23339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42454241 42454241 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS39 23339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42479524 42479524 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS39 23339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42480038 42480038 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS39 23339 hgsc.bcm.edu 37 15 42500325 42500325 + Silent SNP C C T rs149755806 bycluster;by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS41 27072 broad.mit.edu 37 7 38807138 38807138 + Missense_Mutation SNP G A A rs139485137 bycluster;byfrequency;by1000genomes TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS41 27072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38803128 38803128 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS41 27072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38816289 38816289 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS41 27072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38857441 38857441 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS4B 9525 broad.mit.edu 37 18 61064237 61064237 + Intron SNP G A A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS52 6293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33231657 33231657 + Splice_Site SNP C C T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS54 51542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64160992 64160992 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS54 51542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64161068 64161068 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS54 51542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64196097 64196097 + Silent SNP T T A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS72 6944 broad.mit.edu 37 1 151150332 151150332 + Intron SNP G A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VPS8 23355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184689536 184689536 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VPS8 23355 broad.mit.edu;ucsc.edu 37 3 184633149 184633149 + Missense_Mutation SNP G A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VRK2 7444 broad.mit.edu 37 2 58134880 58134881 + 5'UTR DEL AG - - novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VRK2 7444 broad.mit.edu;hgsc.bcm.edu 37 2 58313465 58313465 + RNA SNP T T A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VRK2 7444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 58350342 58350342 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VRK2 7444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 58358987 58358987 + Silent SNP C C T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VRK3 51231 broad.mit.edu 37 19 50485050 50485051 + Intron INS - AC AC rs150610662 bycluster;by1000genomes TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VRK3 51231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50512604 50512604 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG10 54621 hgsc.bcm.edu;ucsc.edu 37 12 118506261 118506261 + Silent SNP C C T novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG10 54621 hgsc.bcm.edu;ucsc.edu 37 12 118511660 118511677 + In_Frame_Del DEL TGATCACCTCGGGCTGGG TGATCACCTCGGGCTGGG - novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 TGATCACCTCGGGCTGGG TGATCACCTCGGGCTGGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG10 54621 hgsc.bcm.edu 37 12 118506355 118506355 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VSIG10L 147645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51845047 51845047 + Silent SNP C C G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG1 340547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107304759 107304759 + Silent SNP C C T novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG1 340547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107319363 107319363 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG2 23584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124619711 124619711 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG4 11326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 65253460 65253460 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG4 11326 broad.mit.edu;ucsc.edu 37 X 65252420 65252420 + Missense_Mutation SNP G A A rs139911916 unknown;alternate_allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VSIG8 391123 broad.mit.edu 37 1 159832346 159832346 + 5'UTR SNP G C C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VSIG8 391123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159827560 159827560 + Silent SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSIG8 391123 hgsc.bcm.edu;ucsc.edu 37 1 159828569 159828572 + Frame_Shift_Del DEL CTCG CTCG - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 CTCG CTCG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSNL1 7447 broad.mit.edu;ucsc.edu 37 2 17773470 17773470 + Silent SNP A G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VSTM1 284415 hgsc.bcm.edu 37 19 54545084 54545084 + Intron SNP G G A novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VSTM1 284415 hgsc.bcm.edu 37 19 54561641 54561641 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4771-01A-01D-1366-10 TCGA-BP-4771-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VTI1A 143187 broad.mit.edu 37 10 114208800 114208800 + Intron DEL G - - novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VTN 7448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26696549 26696549 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VTN 7448 hgsc.bcm.edu;ucsc.edu 37 17 26697201 26697201 + Silent SNP G G T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VTRNA2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135416288 135416288 + upstream SNP G G C novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VTRNA2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135416289 135416289 + upstream SNP G G C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA2 340706 broad.mit.edu 37 10 116045700 116045700 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VWA2 340706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116038497 116038497 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA3A 146177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 22162103 22162103 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA3A 146177 hgsc.bcm.edu 37 16 22122217 22122217 + Silent SNP C C T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VWA3A 146177 hgsc.bcm.edu 37 16 22135024 22135024 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VWA3B 200403 broad.mit.edu;hgsc.bcm.edu 37 2 98853240 98853240 + Intron SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA3B 200403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 98804531 98804531 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA3B 200403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 98828414 98828414 + Missense_Mutation SNP C C G novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA3B 200403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 98914472 98914472 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA5A 4013 broad.mit.edu 37 11 124016740 124016740 + 3'UTR SNP A T T rs9326269 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VWA5A 4013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123988558 123988558 + Silent SNP A A G rs150034934 byfrequency TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA5A 4013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123995002 123995002 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWA5B1 127731 broad.mit.edu;ucsc.edu 37 1 20657460 20657460 + Missense_Mutation SNP A G G novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VWA5B2 90113 broad.mit.edu 37 3 183951431 183951431 + Missense_Mutation SNP C T T rs902417 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VWA5B2 90113 hgsc.bcm.edu 37 3 183952130 183952130 + Silent SNP A A G rs112534894 bycluster;by1000genomes TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VWCE 220001 broad.mit.edu;hgsc.bcm.edu 37 11 61048292 61048292 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWCE 220001 hgsc.bcm.edu 37 11 61053852 61053852 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VWDE 221806 hgsc.bcm.edu;ucsc.edu 37 7 12380036 12380036 + Silent SNP G G A rs73292392 bycluster;byfrequency;by1000genomes TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VWF 7450 broad.mit.edu;hgsc.bcm.edu 37 12 6127588 6127588 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6091108 6091108 + Silent SNP C C T novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6127762 6127762 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6204658 6204658 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6204730 6204730 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6219564 6219564 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 hgsc.bcm.edu 37 12 6127651 6127652 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq VWF 7450 hgsc.bcm.edu;ucsc.edu 37 12 6180476 6180476 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID VWF 7450 hgsc.bcm.edu;ucsc.edu 37 12 6180485 6180485 + Silent SNP G G T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WAC 51322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28906668 28906668 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WAC 51322 hgsc.bcm.edu;ucsc.edu 37 10 28872359 28872359 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WAC 51322 hgsc.bcm.edu;ucsc.edu 37 10 28878756 28878756 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WAC 51322 hgsc.bcm.edu;ucsc.edu 37 10 28897283 28897283 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WAPAL 23063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 88230845 88230845 + Silent SNP A A T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WAPAL 23063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 88259942 88259942 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WARS2 10352 broad.mit.edu 37 1 119576188 119576188 + Intron DEL A - - novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WARS2 10352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 119575670 119575670 + Missense_Mutation SNP G G C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WARS 7453 broad.mit.edu 37 14 100809696 100809696 + Silent SNP A G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WARS 7453 hgsc.bcm.edu 37 14 100801317 100801317 + Silent SNP A A C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WAS 7454 broad.mit.edu 37 X 48549645 48549645 + 3'UTR SNP A G G novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WAS 7454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48544489 48544489 + Silent SNP A A T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WASF2 10163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27739130 27739130 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WASF3 10810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 27246116 27246116 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH2P 375260 broad.mit.edu 37 2 114356198 114356198 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH2P 375260 broad.mit.edu 37 2 114356414 114356414 + 3'UTR SNP A T T rs17149425 unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515298 102515298 + Silent SNP C T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102515335 102515335 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102516350 102516350 + Missense_Mutation SNP G A A rs62028685 unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102516424 102516424 + Silent SNP G T T rs71252253 bycluster;byfrequency TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102516424 102516424 + Silent SNP G T T rs71252253 bycluster;byfrequency TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH3P 374666 broad.mit.edu 37 15 102516492 102516492 + 3'UTR SNP C G G rs17157198 byfrequency TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH5P 375690 broad.mit.edu 37 9 14750 14750 + 3'UTR SNP C T T novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH5P 375690 broad.mit.edu 37 9 14764 14764 + 3'UTR SNP C T T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 14930 14930 + Intron SNP A G G rs75454623 bycluster;byfrequency TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 14933 14933 + Intron SNP G A A novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 14948 14948 + Intron SNP G A A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 14976 14976 + RNA SNP G A A rs77117975 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 14976 14976 + RNA SNP G A A rs77117975 byfrequency TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 14976 14976 + RNA SNP G A A rs77117975 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASH7P 653635 broad.mit.edu 37 1 16487 16487 + Intron SNP T C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASL 8976 broad.mit.edu 37 7 123332841 123332841 + Missense_Mutation SNP G C C novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASL 8976 broad.mit.edu 37 7 123332892 123332892 + Missense_Mutation SNP C A A novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASL 8976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123332672 123332672 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WASL 8976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123335918 123335918 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WASL 8976 broad.mit.edu;ucsc.edu 37 7 123329154 123329154 + Silent SNP T C C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASL 8976 broad.mit.edu;ucsc.edu 37 7 123346339 123346339 + Missense_Mutation SNP C G G novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WASL 8976 hgsc.bcm.edu 37 7 123332871 123332871 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBP11 51729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14943401 14943401 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBP11 51729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14943423 14943423 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBP11P1 441818 broad.mit.edu 37 18 30091829 30091829 + RNA SNP A T T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WBP2 23558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73851365 73851365 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR17 64409 broad.mit.edu 37 7 71178199 71178200 + 3'UTR DEL GT - - rs145929437 by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu 37 7 71177153 71177153 + 3'UTR SNP G G A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 70886059 70886059 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 71142217 71142217 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 71177037 71177037 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 71177038 71177038 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR17 64409 broad.mit.edu;ucsc.edu 37 7 71175760 71175760 + Silent SNP C A A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WBSCR17 64409 hgsc.bcm.edu 37 7 71130461 71130461 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WBSCR27 155368 hgsc.bcm.edu 37 7 73249165 73249165 + Missense_Mutation SNP T T A rs13246460 bycluster;byfrequency;by1000genomes TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WBSCR28 135886 broad.mit.edu 37 7 73280191 73280191 + Silent SNP T C C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDFY2 115825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52293353 52293353 + Silent SNP G G C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85642627 85642627 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85654653 85654653 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85664902 85664902 + Silent SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85674870 85674870 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85722980 85722980 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85731357 85731357 + Silent SNP C C G novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85742692 85742692 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85758222 85758222 + Missense_Mutation SNP T T C novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 hgsc.bcm.edu;ucsc.edu 37 4 85611661 85611662 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 hgsc.bcm.edu;ucsc.edu 37 4 85724467 85724467 + Silent SNP A A T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDFY3 23001 hgsc.bcm.edu;ucsc.edu 37 4 85738690 85738690 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY3 23001 hgsc.bcm.edu;ucsc.edu 37 4 85748120 85748120 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDFY4 57705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49988080 49988080 + Silent SNP C C T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY4 57705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50034823 50034823 + Silent SNP C C T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY4 57705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50108353 50108353 + Splice_Site SNP T T A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDFY4 57705 hgsc.bcm.edu 37 10 50085156 50085156 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDFY4 57705 hgsc.bcm.edu;ucsc.edu 37 10 49983817 49983817 + Silent SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDHD1 11169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55448374 55448374 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR11 55717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 122624668 122624668 + Missense_Mutation SNP G G C rs145467317 unknown;alternate_allele TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR11 55717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 122661797 122661797 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR11 55717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 122663626 122663626 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR13 64743 broad.mit.edu 37 X 48456721 48456721 + Intron DEL T - - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR13 64743 broad.mit.edu 37 X 48456721 48456721 + Intron DEL T - - novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR13 64743 broad.mit.edu 37 X 48457035 48457035 + Intron DEL C - - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR13 64743 broad.mit.edu 37 X 48457035 48457035 + Intron DEL C - - novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR13 64743 hgsc.bcm.edu 37 X 48456398 48456398 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR13 64743 hgsc.bcm.edu 37 X 48458031 48458031 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR13 64743 hgsc.bcm.edu;ucsc.edu 37 X 48462751 48462751 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR17 116966 hgsc.bcm.edu 37 4 177094493 177094493 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR17 116966 hgsc.bcm.edu;ucsc.edu 37 4 177084327 177084327 + Missense_Mutation SNP G G A rs144009080 unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR18 57418 broad.mit.edu 37 19 994079 994079 + Missense_Mutation SNP A G G novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR18 57418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 994289 994289 + Silent SNP C C T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR18 57418 broad.mit.edu;ucsc.edu 37 19 990274 990274 + Silent SNP T A A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR19 57728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39206807 39206807 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR19 57728 hgsc.bcm.edu;ucsc.edu 37 4 39184219 39184219 + Intron SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR1 9948 broad.mit.edu 37 4 10093810 10093810 + Intron DEL T - - rs148448031 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR1 9948 broad.mit.edu;ucsc.edu 37 4 10089380 10089380 + Frame_Shift_Del DEL A - - novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR20 91833 broad.mit.edu 37 14 102680581 102680582 + 3'UTR INS - C C novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR25 79446 broad.mit.edu;hgsc.bcm.edu 37 14 100996232 100996232 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR25 79446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100847489 100847489 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR25 79446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100934461 100934461 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR25 79446 hgsc.bcm.edu;ucsc.edu 37 14 100847481 100847481 + Frame_Shift_Del DEL G G - novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR26 80232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 224599175 224599175 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR26 80232 hgsc.bcm.edu;ucsc.edu 37 1 224586648 224586648 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR26 80232 hgsc.bcm.edu;ucsc.edu 37 1 224606085 224606085 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR27 253769 broad.mit.edu 37 6 169857351 169857352 + 3'UTR INS - C C novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR27 253769 broad.mit.edu 37 6 170060934 170060934 + Intron SNP C T T rs56186829 unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR3 10885 broad.mit.edu;hgsc.bcm.edu 37 1 118475936 118475936 + 5'UTR SNP T T A novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR3 10885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118483544 118483544 + Missense_Mutation SNP C C T rs142439174 bycluster;byfrequency;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR33 55339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128477700 128477700 + Silent SNP T T A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR33 55339 hgsc.bcm.edu;ucsc.edu 37 2 128480195 128480195 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR33 55339 hgsc.bcm.edu;ucsc.edu 37 2 128481936 128481937 + Frame_Shift_Ins INS - - AT novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR35 57539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20138069 20138069 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR35 57539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20153652 20153652 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR35 57539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20162080 20162080 + Silent SNP G G A rs142103808 unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR35 57539 broad.mit.edu;ucsc.edu 37 2 20138115 20138115 + Silent SNP C G G novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR35 57539 hgsc.bcm.edu 37 2 20133224 20133224 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4847-01A-01D-1361-10 TCGA-B0-4847-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR36 134430 broad.mit.edu 37 5 110428209 110428209 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR36 134430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 110428228 110428228 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR36 134430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 110434508 110434508 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR36 134430 hgsc.bcm.edu;ucsc.edu 37 5 110438038 110438038 + Intron SNP T T C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR37 22884 broad.mit.edu;hgsc.bcm.edu 37 10 1149775 1149775 + Silent SNP A A C novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR38 401551 broad.mit.edu 37 9 127619963 127619963 + 3'UTR SNP G T T novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR43 23160 hgsc.bcm.edu 37 2 29164351 29164351 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR46 9277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33248690 33248690 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR46 9277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33248691 33248691 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR46 9277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33254931 33254931 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR46 9277 broad.mit.edu;ucsc.edu 37 6 33255942 33255942 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR46 9277 hgsc.bcm.edu;ucsc.edu 37 6 33247527 33247527 + Intron SNP G G A novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR46 9277 hgsc.bcm.edu;ucsc.edu 37 6 33250286 33250286 + Intron SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR47 22911 broad.mit.edu;hgsc.bcm.edu 37 1 109554267 109554267 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR47 22911 hgsc.bcm.edu 37 1 109553950 109553950 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR48 57599 broad.mit.edu 37 3 39136315 39136315 + 3'UTR SNP C G G novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR48 57599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39108073 39108073 + Silent SNP A A T novel unknown TCGA-CJ-4903-01A-01D-1429-08 TCGA-CJ-4903-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR48 57599 hgsc.bcm.edu;ucsc.edu 37 3 39093500 39093500 + upstream SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR49 151790 hgsc.bcm.edu 37 3 167250750 167250750 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR5 11091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 137007540 137007540 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR5 11091 hgsc.bcm.edu 37 9 137020431 137020431 + Intron SNP A A G rs28620999 bycluster;byfrequency;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR5 11091 hgsc.bcm.edu 37 9 137020444 137020444 + Intron SNP C C T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR5 11091 hgsc.bcm.edu;ucsc.edu 37 9 137006663 137006663 + Silent SNP G G A rs142853576 bycluster;by1000genomes TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 broad.mit.edu 37 3 113128137 113128137 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113127995 113127995 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR52 55779 broad.mit.edu;ucsc.edu 37 3 113022837 113022837 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR52 55779 hgsc.bcm.edu;ucsc.edu 37 3 113098217 113098217 + Missense_Mutation SNP G G A rs58988763 bycluster;byfrequency;by1000genomes TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR53 348793 hgsc.bcm.edu;ucsc.edu 37 3 196288045 196288045 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR55 54853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140049085 140049085 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR55 54853 hgsc.bcm.edu;ucsc.edu 37 5 140048292 140048292 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR59 79726 broad.mit.edu 37 16 74938198 74938198 + Intron DEL A - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR59 79726 broad.mit.edu 37 16 74945997 74945997 + Intron SNP C A A novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR5B 54554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122133533 122133533 + Silent SNP A A T novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR5B 54554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122134164 122134164 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR5B 54554 hgsc.bcm.edu 37 3 122133767 122133767 + Silent SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR61 80349 broad.mit.edu 37 15 78587083 78587083 + Intron DEL T - - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR61 80349 broad.mit.edu;hgsc.bcm.edu 37 15 78588078 78588078 + Intron SNP A A G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR61 80349 hgsc.bcm.edu;ucsc.edu 37 15 78587253 78587253 + Intron SNP C C A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR62 284403 broad.mit.edu;hgsc.bcm.edu 37 19 36574074 36574074 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR62 284403 hgsc.bcm.edu 37 19 36575625 36575625 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR62 284403 hgsc.bcm.edu;ucsc.edu 37 19 36593730 36593730 + Frame_Shift_Del DEL C C - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR62 284403 hgsc.bcm.edu;ucsc.edu 37 19 36593732 36593733 + Frame_Shift_Del DEL CA CA - novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR63 126820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85546974 85546974 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR63 126820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85564293 85564293 + Silent SNP A A G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR64 128025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241875161 241875161 + Silent SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR64 128025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241886621 241886621 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR65 149465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43647495 43647495 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR65 149465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43649511 43649511 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR66 144406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122369710 122369710 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR67 93594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 124138304 124138304 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR69 164781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228754578 228754578 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR69 164781 hgsc.bcm.edu 37 2 228754594 228754594 + Nonsense_Mutation SNP G G T novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR69 164781 hgsc.bcm.edu;ucsc.edu 37 2 228755951 228755951 + Intron SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR69 164781 hgsc.bcm.edu;ucsc.edu 37 2 228758531 228758531 + Missense_Mutation SNP A A C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR70 55100 broad.mit.edu;hgsc.bcm.edu 37 5 37379472 37379472 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR72 256764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 53908347 53908347 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR72 256764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 53957926 53957926 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR72 256764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 54025233 54025233 + Silent SNP C C T novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR72 256764 hgsc.bcm.edu 37 15 53815521 53815521 + Splice_Site SNP T T A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR72 256764 hgsc.bcm.edu;ucsc.edu 37 15 53907894 53907895 + Frame_Shift_Ins INS - - TTCAT novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR7 23335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 54424323 54424323 + Silent SNP A A G rs145083205 unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR73 84942 hgsc.bcm.edu 37 15 85186877 85186894 + In_Frame_Del DEL CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT - rs11267906 bycluster;by1000genomes TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR73 84942 hgsc.bcm.edu 37 15 85186877 85186894 + In_Frame_Del DEL CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT - rs11267906 bycluster;by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR73 84942 hgsc.bcm.edu 37 15 85186892 85186892 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR73 84942 hgsc.bcm.edu;ucsc.edu 37 15 85186743 85186743 + Frame_Shift_Del DEL A A - novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR73 84942 hgsc.bcm.edu;ucsc.edu 37 15 85186877 85186894 + In_Frame_Del DEL CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT - rs11267906 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR74 54663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62601147 62601147 + Splice_Site SNP C C A rs189126082 by1000genomes;alternate_allele TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR74 54663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62606659 62606659 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR75 84128 broad.mit.edu 37 2 190315377 190315382 + Intron DEL CCTCTT - - rs143988798 by1000genomes TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 CCTCTT CCTCTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR75 84128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 190324065 190324065 + Silent SNP G G A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR76 79968 hgsc.bcm.edu;ucsc.edu 37 15 44136119 44136119 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR77 79084 broad.mit.edu;hgsc.bcm.edu 37 1 111989749 111989749 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR77 79084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111990200 111990200 + Splice_Site SNP T T A novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR78 79819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67301400 67301400 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR78 79819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67340463 67340463 + Splice_Site SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR78 79819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67358977 67358977 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR78 79819 hgsc.bcm.edu 37 1 67390428 67390428 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR81 124997 broad.mit.edu 37 17 1631341 1631343 + Intron DEL GAG - - rs66598941 bycluster;by1000genomes TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 GAG GAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR81 124997 broad.mit.edu 37 17 1636960 1636960 + Frame_Shift_Del DEL C - - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR81 124997 broad.mit.edu;hgsc.bcm.edu 37 17 1633695 1633695 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR81 124997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1633775 1633775 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR81 124997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1634217 1634217 + Missense_Mutation SNP A A T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR83 84292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12783897 12783897 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR83 84292 hgsc.bcm.edu 37 19 12780154 12780154 + Intron SNP G G A rs191590551 by1000genomes TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR8 0 broad.mit.edu 37 1 3549682 3549682 + Intron DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR8 0 broad.mit.edu;hgsc.bcm.edu 37 1 3549909 3549909 + Intron SNP G G T novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR8 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3564112 3564112 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR85 92715 broad.mit.edu 37 9 140459472 140459472 + Intron DEL G - - novel unknown TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR85 92715 hgsc.bcm.edu;ucsc.edu 37 9 140449899 140449899 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR86 349136 broad.mit.edu;ucsc.edu 37 7 151092874 151092874 + Silent SNP G A A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR87 83889 broad.mit.edu 37 19 38385920 38385920 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR87 83889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38380084 38380084 + Silent SNP G G A novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR87 83889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38383368 38383368 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR87 83889 hgsc.bcm.edu 37 19 38377432 38377432 + Silent SNP T T C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR87 83889 hgsc.bcm.edu;ucsc.edu 37 19 38382417 38382417 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR87 83889 hgsc.bcm.edu;ucsc.edu 37 19 38383341 38383341 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR88 126248 broad.mit.edu 37 19 33623050 33623051 + 5'UTR INS - G G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR88 126248 hgsc.bcm.edu;ucsc.edu 37 19 33663257 33663257 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR89 112840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64066630 64066630 + Silent SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR89 112840 hgsc.bcm.edu 37 14 64065889 64065889 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR90 197335 broad.mit.edu 37 16 715657 715657 + Intron SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDR90 197335 broad.mit.edu;hgsc.bcm.edu 37 16 706261 706261 + Intron SNP C C T rs189828449 by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR90 197335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 700616 700616 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR91 29062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134889161 134889161 + Silent SNP A A G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR91 29062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134891906 134891906 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR91 29062 hgsc.bcm.edu;ucsc.edu 37 7 134894458 134894458 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDR92 116143 broad.mit.edu;hgsc.bcm.edu 37 2 68361814 68361814 + Intron SNP G G C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR92 116143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 68371743 68371743 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR92 116143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 68384457 68384457 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR93 56964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90276249 90276249 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR93 56964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90276288 90276288 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDR93 56964 hgsc.bcm.edu;ucsc.edu 37 15 90246244 90246244 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDSUB1 151525 broad.mit.edu 37 2 160092388 160092388 + 3'UTR DEL T - - rs139090523 bycluster;by1000genomes TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WDTC1 23038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27621085 27621085 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WDTC1 23038 hgsc.bcm.edu 37 1 27587572 27587572 + Silent SNP C C T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WDYHV1 55093 hgsc.bcm.edu;ucsc.edu 37 8 124442200 124442200 + Intron SNP A A C novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WEE1 7465 broad.mit.edu 37 11 9602790 9602790 + Intron DEL A - - novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WEE1 7465 broad.mit.edu;hgsc.bcm.edu 37 11 9598847 9598847 + Intron SNP A A C novel unknown TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WEE1 7465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9610146 9610146 + Silent SNP C C T novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WEE1 7465 hgsc.bcm.edu 37 11 9608378 9608378 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WFDC1 58189 broad.mit.edu 37 16 84328487 84328487 + 5'UTR SNP C T T novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WFDC1 58189 broad.mit.edu 37 16 84328656 84328656 + Missense_Mutation SNP C A A novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WFDC3 140686 broad.mit.edu 37 20 44402939 44402939 + 3'UTR SNP A G G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WFDC3 140686 broad.mit.edu 37 20 44402939 44402939 + 3'UTR SNP A G G novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WFDC3 140686 broad.mit.edu 37 20 44402954 44402954 + 3'UTR SNP G C C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WFDC5 149708 broad.mit.edu;hgsc.bcm.edu 37 20 43739049 43739049 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WFDC9 259240 broad.mit.edu 37 20 44236581 44236581 + 3'UTR SNP G A A novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WFIKKN1 117166 hgsc.bcm.edu 37 16 681423 681423 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WFIKKN2 124857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48916926 48916926 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WFIKKN2 124857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48918195 48918195 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WFIKKN2 124857 hgsc.bcm.edu;ucsc.edu 37 17 48917427 48917427 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WFS1 7466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 6303445 6303445 + Silent SNP G G A rs139040290 unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHAMML1 0 broad.mit.edu 37 15 23205094 23205094 + RNA SNP G A A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WHAMML1 0 broad.mit.edu 37 15 23205098 23205098 + RNA SNP G A A rs146035894 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WHAMML1 0 broad.mit.edu 37 15 23205108 23205108 + RNA SNP C T T novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WHAMML1 0 broad.mit.edu 37 15 23205108 23205108 + RNA SNP C T T novel unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WHSC1 7468 broad.mit.edu 37 4 1941230 1941230 + Intron SNP G C C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WHSC1 7468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1920240 1920240 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHSC1 7468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1980470 1980470 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHSC1L1 54904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38135924 38135924 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHSC1L1 54904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38173525 38173525 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHSC1L1 54904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38189086 38189086 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHSC1L1 54904 broad.mit.edu;ucsc.edu 37 8 38175500 38175500 + Intron SNP C A A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WHSC1L1 54904 hgsc.bcm.edu;ucsc.edu 37 8 38139060 38139060 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WHSC1L1 54904 hgsc.bcm.edu;ucsc.edu 37 8 38205403 38205403 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WHSC2 7469 broad.mit.edu 37 4 1993533 1993533 + Intron SNP G T T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIF1 11197 hgsc.bcm.edu;ucsc.edu 37 12 65461562 65461562 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WIPF2 147179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38420931 38420931 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WIPF2 147179 broad.mit.edu;ucsc.edu 37 17 38420798 38420798 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIPF3 644150 broad.mit.edu 37 7 29944372 29944372 + 3'UTR DEL T - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIPI1 55062 broad.mit.edu 37 17 66453573 66453581 + 5'UTR DEL GCCCGGGAA - - rs146213184 bycluster;by1000genomes TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 GCCCGGGAA GCCCGGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIPI1 55062 broad.mit.edu 37 17 66453573 66453581 + 5'UTR DEL GCCCGGGAA - - rs146213184 bycluster;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 GCCCGGGAA GCCCGGGAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIPI1 55062 broad.mit.edu;hgsc.bcm.edu 37 17 66422217 66422217 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WIPI2 26100 broad.mit.edu 37 7 5270696 5270696 + 3'UTR DEL A - - novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIPI2 26100 broad.mit.edu 37 7 5272375 5272375 + 3'UTR DEL A - - rs139038602 bycluster;by1000genomes TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIPI2 26100 broad.mit.edu;hgsc.bcm.edu 37 7 5257505 5257505 + Intron SNP G G A novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WIPI2 26100 broad.mit.edu;hgsc.bcm.edu 37 7 5269291 5269291 + Missense_Mutation SNP G G A rs147945082 byfrequency TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WIPI2 26100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5270558 5270558 + Missense_Mutation SNP A A G rs144773383 byfrequency;alternate_allele TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WISP1 8840 hgsc.bcm.edu;ucsc.edu 37 8 134233012 134233013 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WISP2 8839 broad.mit.edu 37 20 43343894 43343905 + Intron DEL GTGTGTGTGAGC - - rs11472998 unknown;alternate_allele TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 GTGTGTGTGAGC GTGTGTGTGAGC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WISP2 8839 broad.mit.edu 37 20 43343904 43343905 + Intron DEL GC - - novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIZ 58525 broad.mit.edu 37 19 15533882 15533882 + 3'UTR SNP T A A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIZ 58525 broad.mit.edu 37 19 15559003 15559003 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WIZ 58525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15537959 15537959 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WLS 79971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 68611602 68611602 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNK1 65125 broad.mit.edu 37 12 1018030 1018030 + 3'UTR SNP G T T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNK1 65125 broad.mit.edu 37 12 1018030 1018030 + 3'UTR SNP G T T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 862733 862733 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 936351 936351 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 977348 977348 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 993869 993869 + Missense_Mutation SNP C C G rs143361850 unknown;alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNK1 65125 hgsc.bcm.edu;ucsc.edu 37 12 1005370 1005370 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WNK1 65125 hgsc.bcm.edu;ucsc.edu 37 12 971279 971279 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID WNK2 65268 broad.mit.edu 37 9 96070760 96070760 + Missense_Mutation SNP T C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx WNK2 65268 broad.mit.edu;ucsc.edu 37 9 95997112 95997112 + Silent SNP C T T rs113308587 bycluster;byfrequency;by1000genomes TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNK2 65268 broad.mit.edu;ucsc.edu 37 9 96002217 96002217 + Missense_Mutation SNP G T T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx WNK2 65268 hgsc.bcm.edu 37 9 96002138 96002138 + Silent SNP C C T novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID WNK3 65267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54319687 54319687 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WNK3 65267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54321069 54321069 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WNK3 65267 hgsc.bcm.edu;ucsc.edu 37 X 54276546 54276546 + Nonsense_Mutation SNP G G T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNK4 65266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40945664 40945664 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WNK4 65266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40947998 40947998 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WNT10A 80326 hgsc.bcm.edu 37 2 219746998 219746998 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNT11 7481 hgsc.bcm.edu 37 11 75898146 75898146 + Missense_Mutation SNP C C A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WNT11 7481 hgsc.bcm.edu 37 11 75898207 75898207 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WNT2 7472 broad.mit.edu;hgsc.bcm.edu 37 7 116963052 116963052 + RNA SNP C C A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNT2 7472 broad.mit.edu;ucsc.edu 37 7 116918296 116918296 + Missense_Mutation SNP G C C novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT3 7473 hgsc.bcm.edu 37 17 44851096 44851097 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNT3A 89780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228246774 228246774 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNT4 54361 broad.mit.edu 37 1 22446108 22446109 + 3'UTR INS - T T rs3835220 bycluster;by1000genomes TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT5A 7474 broad.mit.edu 37 3 55504067 55504067 + 3'UTR SNP T A A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT5B 81029 broad.mit.edu 37 12 1748873 1748873 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT5B 81029 broad.mit.edu 37 12 1755046 1755046 + Silent SNP C T T novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT7A 7476 broad.mit.edu 37 3 13921263 13921263 + Silent SNP G T T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT7B 7477 broad.mit.edu 37 22 46372650 46372650 + 5'UTR SNP G A A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WNT7B 7477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46319160 46319160 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNT8A 7478 hgsc.bcm.edu 37 5 137426309 137426309 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WNT9A 7483 hgsc.bcm.edu 37 1 228113202 228113202 + Silent SNP G G T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WRN 7486 broad.mit.edu 37 8 30945246 30945246 + Intron SNP G A A novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WRN 7486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 30977877 30977877 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WRN 7486 hgsc.bcm.edu 37 8 31009020 31009020 + Intron SNP C C T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WRN 7486 hgsc.bcm.edu 37 8 31009416 31009416 + Intron SNP T T A rs34431249 bycluster;by1000genomes TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WRN 7486 hgsc.bcm.edu 37 8 31009416 31009416 + Intron SNP T T A rs34431249 bycluster;by1000genomes TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WRNIP1 56897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 2784577 2784577 + Silent SNP G G A rs150885902 unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WRNIP1 56897 hgsc.bcm.edu;ucsc.edu 37 6 2768965 2768965 + Missense_Mutation SNP A A G rs77289107 bycluster;byfrequency;by1000genomes TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WSB2 55884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 118481141 118481141 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WSB2 55884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 118481144 118481144 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WSCD1 23302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6021491 6021491 + Missense_Mutation SNP G G A rs112285134 by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WSCD1 23302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6023803 6023803 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WSCD2 9671 hgsc.bcm.edu;ucsc.edu 37 12 108641973 108641973 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WT1 7490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32417899 32417899 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WT1 7490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32421532 32421532 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq WT1 7490 hgsc.bcm.edu 37 11 32456513 32456514 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-BP-4803-01A-01W-1369-10 TCGA-BP-4803-11A-01W-1369-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . . . Illumina MiSeq WTAP 9589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160174528 160174528 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WTAP 9589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160176079 160176079 + Silent SNP C C A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WWC2 80014 broad.mit.edu 37 4 184203759 184203759 + Intron SNP G T T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WWC2 80014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184175071 184175071 + Frame_Shift_Del DEL A A - novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WWC2 80014 hgsc.bcm.edu 37 4 184201996 184202001 + In_Frame_Del DEL AAGAAG AAGAAG - novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 AAGAAG AAGAAG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WWC3 55841 broad.mit.edu 37 X 10109659 10109659 + 3'UTR DEL A - - rs36042905 unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WWC3 55841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 10085338 10085338 + Silent SNP C C T rs148094144 unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WWOX 51741 hgsc.bcm.edu;ucsc.edu 37 16 78466519 78466519 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WWP1 11059 broad.mit.edu 37 8 87479162 87479162 + 3'UTR SNP A C C novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WWP1 11059 broad.mit.edu 37 8 87479162 87479162 + 3'UTR SNP A C C novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx WWP1 11059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87464827 87464827 + Silent SNP A A G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WWP1 11059 hgsc.bcm.edu;ucsc.edu 37 8 87424056 87424056 + Silent SNP T T C novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WWP2 11060 hgsc.bcm.edu 37 16 69964089 69964089 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WWP2 11060 hgsc.bcm.edu 37 16 69964089 69964089 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID WWP2 11060 hgsc.bcm.edu;ucsc.edu 37 16 69965499 69965499 + Intron SNP C C A novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq WWP2 11060 hgsc.bcm.edu;ucsc.edu 37 16 69967969 69967969 + Silent SNP C C A rs8047888 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XAB2 56949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7688070 7688070 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XAGE2 9502 hgsc.bcm.edu 37 X 52385925 52385925 + Intron SNP A A T novel unknown TCGA-BP-4766-01A-01D-1366-10 TCGA-BP-4766-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XAGE5 170627 hgsc.bcm.edu 37 X 52841579 52841579 + 5'UTR SNP G G T novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XAGE5 170627 hgsc.bcm.edu 37 X 52841579 52841579 + 5'UTR SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XBP1 7494 broad.mit.edu;hgsc.bcm.edu 37 22 29196020 29196020 + Intron SNP C C G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XBP1 7494 hgsc.bcm.edu 37 22 29191503 29191503 + 3'UTR SNP A A G novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XCL1 6375 broad.mit.edu;hgsc.bcm.edu 37 1 168550370 168550370 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XCL1 6375 broad.mit.edu;hgsc.bcm.edu 37 1 168550371 168550371 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XCR1 2829 broad.mit.edu;hgsc.bcm.edu 37 3 46063001 46063001 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XDH 7498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 31571778 31571778 + Missense_Mutation SNP G G T novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XDH 7498 broad.mit.edu;ucsc.edu 37 2 31598321 31598321 + Silent SNP G A A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XDH 7498 hgsc.bcm.edu 37 2 31598370 31598370 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XG 7499 hgsc.bcm.edu;ucsc.edu 37 X 2688594 2688594 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIAP 331 broad.mit.edu 37 X 123025168 123025168 + Splice_Site SNP T C C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XIAP 331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123020288 123020288 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39225988 39225988 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39225989 39225989 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39227553 39227553 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39229862 39229862 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu 37 2 168105254 168105254 + Nonsense_Mutation SNP C A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167760143 167760143 + Missense_Mutation SNP G G T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167760331 167760331 + Silent SNP C C T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167992508 167992508 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168099752 168099752 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168101917 168101917 + Nonsense_Mutation SNP A A T novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168103812 168103812 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168103910 168103910 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168104032 168104032 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168104885 168104885 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIRP2 129446 hgsc.bcm.edu;ucsc.edu 37 2 168101553 168101553 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIST 7503 broad.mit.edu 37 X 73051012 73051012 + RNA SNP C A A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XIST 7503 broad.mit.edu 37 X 73071846 73071846 + RNA DEL A - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XIST 7503 broad.mit.edu;hgsc.bcm.edu 37 X 73063111 73063111 + RNA SNP A A G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIST 7503 broad.mit.edu;hgsc.bcm.edu 37 X 73068428 73068428 + RNA SNP G G C novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XIST 7503 broad.mit.edu;hgsc.bcm.edu 37 X 73071200 73071200 + RNA SNP G G T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XK 7504 broad.mit.edu;hgsc.bcm.edu 37 X 37586901 37586901 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XKR4 114786 broad.mit.edu 37 8 56015738 56015738 + Silent SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XKR4 114786 broad.mit.edu 37 8 56363592 56363592 + Intron SNP G A A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XKR4 114786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56436104 56436104 + Missense_Mutation SNP G G T novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XKR4 114786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56436707 56436707 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XKR6 286046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10782233 10782233 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XKR6 286046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10782282 10782282 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XKR6 286046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11058309 11058309 + Silent SNP G G A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XKR7 343702 broad.mit.edu;hgsc.bcm.edu 37 20 30556225 30556225 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPA 7507 hgsc.bcm.edu;ucsc.edu 37 9 100437766 100437766 + Silent SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPC 7508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14188848 14188848 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPC 7508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14200007 14200007 + Missense_Mutation SNP T T A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPC 7508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14214467 14214467 + Missense_Mutation SNP C C A novel unknown TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPC 7508 hgsc.bcm.edu 37 3 14193901 14193901 + Silent SNP A A T novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPC 7508 hgsc.bcm.edu;ucsc.edu 37 3 14188813 14188813 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPNPEP1 7511 hgsc.bcm.edu;ucsc.edu 37 10 111643872 111643874 + In_Frame_Del DEL GTG GTG - novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 GTG GTG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPNPEP2 7512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128886138 128886138 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPNPEP2 7512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128895243 128895243 + Missense_Mutation SNP G G T novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPNPEP2 7512 hgsc.bcm.edu 37 X 128886126 128886126 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4346-01A-01D-1366-10 TCGA-BP-4346-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPNPEP3 63929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41310325 41310325 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO1 7514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61706022 61706022 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO1 7514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61709537 61709537 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO1 7514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61749804 61749804 + Missense_Mutation SNP T T A rs76607520 unknown;alternate_allele TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO1 7514 hgsc.bcm.edu 37 2 61717806 61717806 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPO1 7514 hgsc.bcm.edu;ucsc.edu 37 2 61706043 61706043 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPO1 7514 hgsc.bcm.edu;ucsc.edu 37 2 61753621 61753621 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPO5 57510 broad.mit.edu 37 6 43491550 43491550 + 3'UTR SNP C A A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPO5 57510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43491607 43491607 + Silent SNP C C T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq XPO5 57510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43493658 43493658 + Silent SNP A A G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq XPO5 57510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43515440 43515440 + Silent SNP G G A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq XPO5 57510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43528033 43528033 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO5 57510 hgsc.bcm.edu;ucsc.edu 37 6 43492326 43492326 + Silent SNP T T C novel unknown TCGA-CZ-5455-01A-01D-1501-10 TCGA-CZ-5455-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO5 57510 hgsc.bcm.edu;ucsc.edu 37 6 43526277 43526277 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPO6 23214 broad.mit.edu 37 16 28109748 28109748 + 3'UTR SNP G T T novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPO6 23214 broad.mit.edu 37 16 28222834 28222834 + 5'UTR SNP G T T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPO6 23214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28115915 28115915 + Silent SNP G G T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO6 23214 broad.mit.edu;ucsc.edu 37 16 28181115 28181115 + Missense_Mutation SNP T C C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPO7 23039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 21827777 21827777 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO7 23039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 21840307 21840307 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPO7 23039 hgsc.bcm.edu 37 8 21826991 21826991 + Intron SNP C C T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPOT 11260 broad.mit.edu 37 12 64812710 64812710 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPOT 11260 broad.mit.edu 37 12 64812808 64812808 + Silent SNP C G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPOT 11260 broad.mit.edu;hgsc.bcm.edu 37 12 64828368 64828368 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPOT 11260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64827305 64827305 + Silent SNP C C T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPOT 11260 broad.mit.edu;ucsc.edu 37 12 64812728 64812728 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPOT 11260 hgsc.bcm.edu 37 12 64803895 64803895 + Intron SNP C C G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPOT 11260 hgsc.bcm.edu;ucsc.edu 37 12 64818820 64818820 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPR1 9213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180849261 180849261 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPR1 9213 broad.mit.edu;ucsc.edu 37 1 180794054 180794054 + Missense_Mutation SNP A G G novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XPR1 9213 hgsc.bcm.edu;ucsc.edu 37 1 180651511 180651511 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XPR1 9213 hgsc.bcm.edu;ucsc.edu 37 1 180694098 180694098 + Intron SNP A A C novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPR1 9213 hgsc.bcm.edu;ucsc.edu 37 1 180766114 180766114 + Intron SNP A A C novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XPR1 9213 hgsc.bcm.edu;ucsc.edu 37 1 180768517 180768517 + Intron SNP C C T novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XRCC4 7518 broad.mit.edu;hgsc.bcm.edu 37 5 82554530 82554530 + Intron SNP T T C novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRCC4 7518 hgsc.bcm.edu;ucsc.edu 37 5 82491622 82491623 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRCC5 7520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217001838 217001838 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRCC5 7520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217005911 217005911 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRCC6 2547 broad.mit.edu;hgsc.bcm.edu 37 22 42054277 42054277 + Silent SNP C C T rs139850731 unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRCC6BP1 91419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58340855 58340855 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRCC6BP1 91419 hgsc.bcm.edu;ucsc.edu 37 12 58347427 58347427 + Silent SNP C C T novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XRN1 54464 broad.mit.edu 37 3 142031463 142031463 + Missense_Mutation SNP G A A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx XRN1 54464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142037709 142037709 + Silent SNP A A G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRN1 54464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142098968 142098968 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRN1 54464 hgsc.bcm.edu;ucsc.edu 37 3 142051287 142051287 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XRN2 22803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21314413 21314413 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRN2 22803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21321460 21321460 + Silent SNP A A T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRN2 22803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21336744 21336744 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XRN2 22803 hgsc.bcm.edu 37 20 21314823 21314823 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XRRA1 143570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74555233 74555233 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XYLB 9942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38390050 38390050 + Missense_Mutation SNP G G T rs146884889 unknown;alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XYLT1 64131 broad.mit.edu;hgsc.bcm.edu 37 16 17202533 17202533 + 3'UTR SNP C C A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XYLT1 64131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 17202837 17202837 + Silent SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XYLT1 64131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 17211800 17211800 + Missense_Mutation SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XYLT1 64131 hgsc.bcm.edu;ucsc.edu 37 16 17221643 17221643 + Silent SNP C C T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID XYLT2 64132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48432223 48432223 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq XYLT2 64132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48433278 48433278 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YAP1 10413 broad.mit.edu 37 11 101984953 101984953 + Silent SNP T C C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YAP1 10413 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102100588 102100588 + Silent SNP T T C novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YARS2 51067 broad.mit.edu;hgsc.bcm.edu 37 12 32908819 32908819 + 5'UTR SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YARS 8565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33245096 33245096 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YDJC 150223 hgsc.bcm.edu 37 22 21984312 21984312 + 5'UTR SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YEATS2 55689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 183490251 183490251 + Silent SNP G G C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YEATS2 55689 hgsc.bcm.edu;ucsc.edu 37 3 183525823 183525823 + Silent SNP G G T novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID YEATS4 8089 broad.mit.edu 37 12 69756582 69756582 + Silent SNP T G G novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YEATS4 8089 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 69764550 69764550 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YES1 7525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 743325 743325 + Missense_Mutation SNP A A C novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIF1A 10897 hgsc.bcm.edu;ucsc.edu 37 11 66052992 66052996 + Frame_Shift_Del DEL CACCT CACCT - novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 CACCT CACCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIF1B 90522 broad.mit.edu 37 19 38797598 38797598 + Intron SNP A G G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YIF1B 90522 broad.mit.edu 37 19 38797601 38797601 + Intron SNP A G G novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YIF1B 90522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38798068 38798068 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIF1B 90522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38799931 38799931 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIPF3 25844 broad.mit.edu;hgsc.bcm.edu 37 6 43479853 43479853 + 3'UTR SNP C C A novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIPF3 25844 hgsc.bcm.edu 37 6 43483424 43483425 + Frame_Shift_Ins INS - - C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIPF4 84272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32526479 32526479 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5986-01A-11D-1669-08 TCGA-CZ-5986-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YIPF4 84272 broad.mit.edu;ucsc.edu 37 2 32517399 32517399 + Silent SNP A G G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YIPF5 81555 hgsc.bcm.edu;ucsc.edu 37 5 143541805 143541805 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID YKT6 10652 broad.mit.edu 37 7 44252191 44252192 + 3'UTR DEL TG - - rs3840674 bycluster;by1000genomes TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YLPM1 56252 broad.mit.edu 37 14 75288138 75288138 + Intron DEL A - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75230717 75230717 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75230960 75230960 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75248501 75248501 + Silent SNP A A T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75248651 75248651 + Silent SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75279329 75279329 + Splice_Site SNP A A G novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YLPM1 56252 broad.mit.edu;ucsc.edu 37 14 75230551 75230551 + Frame_Shift_Del DEL A - - novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YLPM1 56252 broad.mit.edu;ucsc.edu 37 14 75230625 75230626 + Frame_Shift_Ins INS - CC CC novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YLPM1 56252 hgsc.bcm.edu 37 14 75266224 75266224 + Silent SNP T T A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID YLPM1 56252 hgsc.bcm.edu;ucsc.edu 37 14 75230953 75230953 + Missense_Mutation SNP C C T rs45599947 bycluster;by1000genomes TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID YLPM1 56252 hgsc.bcm.edu;ucsc.edu 37 14 75287773 75287773 + Frame_Shift_Del DEL A A - novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YME1L1 10730 broad.mit.edu 37 10 27434352 27434352 + Intron SNP C T T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YME1L1 10730 broad.mit.edu 37 10 27437893 27437893 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YME1L1 10730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27420850 27420850 + Missense_Mutation SNP C C G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YME1L1 10730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27431334 27431334 + Missense_Mutation SNP C C G rs143591480 unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YME1L1 10730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27437878 27437878 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YME1L1 10730 hgsc.bcm.edu 37 10 27436462 27436463 + Frame_Shift_Del DEL GC GC - rs151242856 by1000genomes TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 GC GC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YOD1 55432 hgsc.bcm.edu;ucsc.edu 37 1 207222973 207222977 + Frame_Shift_Del DEL GCAAA GCAAA - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 GCAAA GCAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YPEL2 388403 broad.mit.edu 37 17 57474661 57474661 + 3'UTR SNP G T T novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YPEL2 388403 broad.mit.edu 37 17 57474735 57474736 + 3'UTR DEL TT - - novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YPEL2 388403 broad.mit.edu;hgsc.bcm.edu 37 17 57430716 57430716 + 5'UTR SNP C C A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YPEL4 219539 broad.mit.edu 37 11 57414584 57414584 + 5'UTR SNP G A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YRDC 79693 broad.mit.edu;hgsc.bcm.edu 37 1 38269558 38269558 + 3'UTR SNP T T G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YRDC 79693 broad.mit.edu;hgsc.bcm.edu 37 1 38272663 38272663 + Intron SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YSK4 0 broad.mit.edu 37 2 135722316 135722316 + 3'UTR SNP G A A novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YSK4 0 broad.mit.edu;hgsc.bcm.edu 37 2 135749074 135749074 + Intron SNP T T A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YSK4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135744718 135744718 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC1 91746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69188621 69188621 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC1 91746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69204039 69204039 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC1 91746 broad.mit.edu;ucsc.edu 37 4 69203460 69203460 + Missense_Mutation SNP T G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YTHDC2 64848 broad.mit.edu;hgsc.bcm.edu 37 5 112899759 112899759 + Silent SNP T T C novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC2 64848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112888982 112888982 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC2 64848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112899071 112899071 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC2 64848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112902905 112902905 + Missense_Mutation SNP G G T novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDC2 64848 hgsc.bcm.edu 37 5 112899158 112899165 + Frame_Shift_Del DEL TAATTGTA TAATTGTA - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 TAATTGTA TAATTGTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDF1 54915 broad.mit.edu 37 20 61827960 61827960 + 3'UTR SNP C T T novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YTHDF1 54915 broad.mit.edu;ucsc.edu 37 20 61834018 61834018 + Missense_Mutation SNP A G G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YTHDF2 51441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29069170 29069170 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YTHDF3 253943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 64099319 64099319 + Missense_Mutation SNP G G A rs61745071 unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YWHAB 7529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 43533772 43533772 + Silent SNP G G A novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YWHAE 7531 hgsc.bcm.edu 37 17 1257623 1257623 + Silent SNP A A G novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID YWHAE 7531 hgsc.bcm.edu;ucsc.edu 37 17 1248776 1248776 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID YY1 7528 broad.mit.edu 37 14 100744094 100744094 + 3'UTR DEL A - - rs112634633 unknown TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YY1 7528 broad.mit.edu 37 14 100744094 100744095 + 3'UTR DEL AA - - rs112634633 unknown;alternate_allele TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YY1AP1 55249 broad.mit.edu 37 1 155629401 155629401 + 3'UTR SNP G A A novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YY1AP1 55249 broad.mit.edu 37 1 155642422 155642422 + Missense_Mutation SNP A G G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx YY1AP1 55249 broad.mit.edu;hgsc.bcm.edu 37 1 155630682 155630682 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq YY1AP1 55249 broad.mit.edu;hgsc.bcm.edu 37 1 155640162 155640162 + Missense_Mutation SNP A A T novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZACN 353174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74076506 74076506 + Splice_Site SNP G G A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZADH2 284273 broad.mit.edu 37 18 72913186 72913186 + 3'UTR DEL T - - rs67264905 unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZADH2 284273 broad.mit.edu 37 18 72913186 72913186 + 3'UTR DEL T - - rs67264905 unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZADH2 284273 broad.mit.edu 37 18 72913186 72913186 + 3'UTR DEL T - - rs67264905 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZADH2 284273 broad.mit.edu 37 18 72920998 72920999 + Frame_Shift_Ins INS - C C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZAK 51776 broad.mit.edu 37 2 174090636 174090637 + Intron INS - A A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZAK 51776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 174131419 174131419 + Frame_Shift_Del DEL C C - novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZAN 7455 broad.mit.edu 37 7 100395076 100395076 + Silent SNP G A A novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZAN 7455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100361427 100361427 + Splice_Site SNP A A G novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZAN 7455 hgsc.bcm.edu 37 7 100353014 100353016 + In_Frame_Del DEL ACA ACA - novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 ACA ACA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZAN 7455 hgsc.bcm.edu 37 7 100371474 100371474 + Missense_Mutation SNP G G A rs78193191 bycluster;byfrequency;by1000genomes TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZAN 7455 hgsc.bcm.edu 37 7 100371476 100371477 + Frame_Shift_Ins INS - - G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZAN 7455 hgsc.bcm.edu 37 7 100371476 100371477 + Frame_Shift_Ins INS - - G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZAN 7455 hgsc.bcm.edu 37 7 100371476 100371477 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZAN 7455 hgsc.bcm.edu 37 7 100371476 100371477 + Frame_Shift_Ins INS - - G novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZAN 7455 hgsc.bcm.edu;ucsc.edu 37 7 100386875 100386875 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 166958709 166958709 + Splice_Site SNP T T A novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167000169 167000169 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167000224 167000224 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167000259 167000259 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167045872 167045872 + Silent SNP A A G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBBX 79740 hgsc.bcm.edu 37 3 166960361 166960361 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBED3 84327 broad.mit.edu 37 5 76373057 76373058 + In_Frame_Ins INS - GCG GCG novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBED4 9889 broad.mit.edu;hgsc.bcm.edu 37 22 50279076 50279076 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBED5 58486 broad.mit.edu;ucsc.edu 37 11 10875055 10875055 + Missense_Mutation SNP T C C rs1046297 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBP1 81030 hgsc.bcm.edu 37 20 56195329 56195329 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB10 65986 broad.mit.edu;hgsc.bcm.edu 37 8 81412314 81412314 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB10 65986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 81399984 81399984 + Silent SNP T T C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB10 65986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 81411971 81411971 + Silent SNP T T C novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB10 65986 hgsc.bcm.edu 37 8 81399912 81399913 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB11 27107 broad.mit.edu 37 3 101389965 101389965 + Intron SNP A C C novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB12 221527 broad.mit.edu;hgsc.bcm.edu 37 6 31867889 31867889 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5102-01A-01D-1421-08 TCGA-B0-5102-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB1 22890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64988623 64988623 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB1 22890 hgsc.bcm.edu;ucsc.edu 37 14 64990159 64990159 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB16 7704 broad.mit.edu 37 11 114057770 114057770 + Intron SNP C T T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB16 7704 broad.mit.edu 37 11 114121372 114121372 + 3'UTR DEL A - - rs113522699 unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB16 7704 broad.mit.edu;ucsc.edu 37 11 113934420 113934420 + Missense_Mutation SNP C T T novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB16 7704 hgsc.bcm.edu 37 11 114112972 114112972 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB20 26137 broad.mit.edu 37 3 114057729 114057729 + 3'UTR SNP A C C novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB20 26137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 114058081 114058081 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB20 26137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 114070318 114070318 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB20 26137 hgsc.bcm.edu 37 3 114058034 114058034 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4349-01A-01D-1366-10 TCGA-BP-4349-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB20 26137 hgsc.bcm.edu;ucsc.edu 37 3 114099083 114099083 + 5'UTR SNP A A G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB20 26137 hgsc.bcm.edu;ucsc.edu 37 3 114207080 114207080 + Intron SNP C C T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB22 9278 hgsc.bcm.edu 37 6 33283534 33283534 + Missense_Mutation SNP T T A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB25 7597 hgsc.bcm.edu 37 14 64953924 64953924 + Missense_Mutation SNP G G T rs142507817 unknown;alternate_allele TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB26 57684 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125681478 125681478 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB33 10009 hgsc.bcm.edu 37 X 119387833 119387834 + In_Frame_Ins INS - - TGA novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB33 10009 hgsc.bcm.edu 37 X 119387833 119387834 + In_Frame_Ins INS - - TGA novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB33 10009 hgsc.bcm.edu 37 X 119387854 119387854 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB33 10009 hgsc.bcm.edu 37 X 119388522 119388522 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB37 84614 broad.mit.edu 37 1 173834625 173834625 + 5'Flank SNP A G G novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB37 84614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173854993 173854993 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB37 84614 hgsc.bcm.edu 37 1 173839525 173839525 + Silent SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB37 84614 hgsc.bcm.edu;ucsc.edu 37 1 173854955 173854955 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB3 79842 broad.mit.edu 37 11 62519423 62519423 + 3'UTR DEL A - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB3 79842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62520590 62520590 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB38 253461 broad.mit.edu 37 3 141164926 141164926 + 3'UTR DEL A - - novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB38 253461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141161609 141161609 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4970-01A-01D-1462-08 TCGA-BP-4970-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB38 253461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141161785 141161785 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB38 253461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141163046 141163046 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB38 253461 hgsc.bcm.edu 37 3 141162128 141162128 + Missense_Mutation SNP C C G rs62282002 bycluster;by1000genomes TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB38 253461 hgsc.bcm.edu 37 3 141163615 141163615 + Silent SNP T T C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB38 253461 hgsc.bcm.edu 37 3 141164552 141164552 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4160-01A-02D-1366-10 TCGA-BP-4160-11A-01D-1806-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB38 253461 hgsc.bcm.edu;ucsc.edu 37 3 141161504 141161504 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB38 253461 hgsc.bcm.edu;ucsc.edu 37 3 141163202 141163202 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB38 253461 hgsc.bcm.edu;ucsc.edu 37 3 141163555 141163555 + Silent SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB39 9880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57396861 57396861 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB39 9880 hgsc.bcm.edu;ucsc.edu 37 12 57396664 57396664 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB39 9880 hgsc.bcm.edu;ucsc.edu 37 12 57397920 57397923 + Frame_Shift_Del DEL AGGA AGGA - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 AGGA AGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB40 9923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22816881 22816881 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB40 9923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22828055 22828055 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB40 9923 broad.mit.edu;ucsc.edu 37 1 22843894 22843894 + Missense_Mutation SNP A G G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB40 9923 hgsc.bcm.edu;ucsc.edu 37 1 22850736 22850737 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB41 360023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197159944 197159944 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB41 360023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197168567 197168567 + Missense_Mutation SNP T T C novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB41 360023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197169423 197169423 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB41 360023 hgsc.bcm.edu;ucsc.edu 37 1 197159958 197159959 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB43 23099 broad.mit.edu 37 9 129596298 129596298 + 3'UTR DEL A - - novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB43 23099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 129595818 129595818 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB44 29068 broad.mit.edu 37 11 130109527 130109527 + Intron DEL A - - novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB44 29068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130131008 130131008 + Nonsense_Mutation SNP A A T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB44 29068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130131043 130131043 + Silent SNP A A T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB4 57659 broad.mit.edu 37 17 7363094 7363094 + 3'UTR DEL A - - novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB4 57659 broad.mit.edu 37 17 7363094 7363094 + 3'UTR DEL A - - novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB4 57659 broad.mit.edu 37 17 7363126 7363126 + 3'UTR DEL A - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB4 57659 broad.mit.edu 37 17 7369782 7369782 + Silent SNP A G G novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB46 140685 broad.mit.edu;hgsc.bcm.edu 37 20 62407316 62407316 + Splice_Site SNP C C T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB48 3104 hgsc.bcm.edu 37 1 6640756 6640756 + Silent SNP T T A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB48 3104 hgsc.bcm.edu;ucsc.edu 37 1 6647268 6647280 + Frame_Shift_Del DEL TCCTCCTGCTCCC TCCTCCTGCTCCC - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 TCCTCCTGCTCCC TCCTCCTGCTCCC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB49 166793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 4303969 4303969 + Silent SNP C C T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB49 166793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 4304210 4304210 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB49 166793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 4322531 4322531 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB5 9925 broad.mit.edu;ucsc.edu 37 9 37441467 37441467 + Missense_Mutation SNP A C C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB6 10773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125674096 125674096 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB7A 51341 broad.mit.edu;hgsc.bcm.edu 37 19 4048233 4048233 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB7C 201501 broad.mit.edu 37 18 45553821 45553821 + 3'UTR DEL G - - novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB7C 201501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 45567044 45567044 + Silent SNP G G A rs144374638 unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZBTB8B 728116 broad.mit.edu;ucsc.edu 37 1 32950945 32950945 + Missense_Mutation SNP G T T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZBTB8B 728116 hgsc.bcm.edu;ucsc.edu 37 1 32936276 32936276 + Silent SNP G G A novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZBTB8OS 339487 broad.mit.edu 37 1 33087387 33087387 + 3'UTR SNP T C C novel unknown TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3H11A 9877 broad.mit.edu;hgsc.bcm.edu 37 1 203816426 203816426 + Nonsense_Mutation SNP C C A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H12A 80149 broad.mit.edu;hgsc.bcm.edu 37 1 37941073 37941073 + 5'UTR SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H12A 80149 hgsc.bcm.edu 37 1 37949076 37949076 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H12C 85463 broad.mit.edu 37 11 110030250 110030250 + Intron SNP T C C novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3H12C 85463 broad.mit.edu 37 11 110036661 110036661 + 3'UTR DEL T - - rs35138658 bycluster TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3H12C 85463 hgsc.bcm.edu 37 11 110035964 110035964 + Silent SNP G G A novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H13 23091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 46543242 46543242 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H13 23091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 46577388 46577388 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H13 23091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 46584527 46584527 + Silent SNP A A G novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H13 23091 hgsc.bcm.edu;ucsc.edu 37 13 46539482 46539482 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H15 55854 broad.mit.edu 37 2 187350884 187350884 + 5'Flank DEL G - - rs138337238 bycluster;by1000genomes TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3H15 55854 hgsc.bcm.edu 37 2 187367291 187367291 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H15 55854 hgsc.bcm.edu;ucsc.edu 37 2 187370523 187370523 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H18 124245 broad.mit.edu;hgsc.bcm.edu 37 16 88688681 88688681 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H18 124245 broad.mit.edu;hgsc.bcm.edu 37 16 88697620 88697620 + Silent SNP G G A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H18 124245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88690383 88690383 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H18 124245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88694152 88694152 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H18 124245 broad.mit.edu;ucsc.edu 37 16 88696911 88696911 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3H18 124245 hgsc.bcm.edu;ucsc.edu 37 16 88644135 88644135 + Splice_Site SNP G G A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H3 23144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144550433 144550433 + Silent SNP G G C novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H3 23144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144620458 144620458 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H3 23144 hgsc.bcm.edu 37 8 144522386 144522387 + In_Frame_Ins INS - - GAG rs35759992 unknown;alternate_allele TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H3 23144 hgsc.bcm.edu 37 8 144522389 144522389 + Silent SNP G G A rs137878905 unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H4 23211 broad.mit.edu 37 19 47588443 47588443 + Missense_Mutation SNP C A A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3H4 23211 hgsc.bcm.edu 37 19 47575279 47575279 + Silent SNP G G C rs76187449 byfrequency TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H6 376940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 113074843 113074843 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H6 376940 hgsc.bcm.edu 37 2 113089834 113089834 + Silent SNP A A G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H6 376940 hgsc.bcm.edu;ucsc.edu 37 2 113060908 113060908 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H6 376940 hgsc.bcm.edu;ucsc.edu 37 2 113067654 113067654 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H6 376940 hgsc.bcm.edu;ucsc.edu 37 2 113080286 113080286 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3H7A 29066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11845212 11845212 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H7A 29066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11873154 11873154 + Silent SNP A A G novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H7A 29066 hgsc.bcm.edu;ucsc.edu 37 16 11846601 11846602 + Frame_Shift_Del DEL TC TC - novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 TC TC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H7B 23264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41742095 41742095 + Silent SNP G G A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3H7B 23264 hgsc.bcm.edu;ucsc.edu 37 22 41721776 41721776 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3HAV1 56829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138764225 138764225 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3HAV1 56829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138764442 138764442 + Silent SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3HAV1 56829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138794026 138794026 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3HAV1 56829 hgsc.bcm.edu 37 7 138732448 138732448 + Silent SNP A A G novel unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZC3HAV1L 92092 broad.mit.edu 37 7 138711009 138711009 + 3'UTR DEL A - - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3HAV1L 92092 broad.mit.edu 37 7 138711009 138711009 + 3'UTR DEL A - - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZC3HC1 51530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129666109 129666109 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3HC1 51530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129666110 129666110 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZC3HC1 51530 hgsc.bcm.edu;ucsc.edu 37 7 129663471 129663471 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC12 170261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117960298 117960298 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC12 170261 hgsc.bcm.edu 37 X 117959578 117959578 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZCCHC13 389874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 73524500 73524500 + Silent SNP C C T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC14 23174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 87493617 87493621 + Frame_Shift_Del DEL TGCTG TGCTG - novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 TGCTG TGCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC14 23174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 87493727 87493727 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC14 23174 hgsc.bcm.edu;ucsc.edu 37 16 87446254 87446254 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC16 340595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 111698754 111698754 + Silent SNP C C T novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC17 51538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 31782970 31782970 + Missense_Mutation SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC17 51538 hgsc.bcm.edu;ucsc.edu 37 1 31836865 31836884 + Frame_Shift_Del DEL AATTTTCTTTTCAGGAGAAG AATTTTCTTTTCAGGAGAAG - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 AATTTTCTTTTCAGGAGAAG AATTTTCTTTTCAGGAGAAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC17 51538 hgsc.bcm.edu;ucsc.edu 37 1 31836934 31836934 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC18 644353 broad.mit.edu 37 X 103358772 103358772 + 5'UTR SNP G T T novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC2 54877 broad.mit.edu 37 18 60244189 60244189 + 3'UTR DEL A - - novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC2 54877 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 60241796 60241796 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC2 54877 hgsc.bcm.edu;ucsc.edu 37 18 60242638 60242638 + Silent SNP T T C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZCCHC3 85364 broad.mit.edu 37 20 278688 278690 + In_Frame_Del DEL CGG - - rs5839847 bycluster;by1000genomes TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC3 85364 broad.mit.edu 37 20 278688 278690 + In_Frame_Del DEL CGG - - rs5839847 bycluster;by1000genomes TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC3 85364 broad.mit.edu 37 20 278688 278690 + In_Frame_Del DEL CGG - - rs5839847 bycluster;by1000genomes TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 CGG CGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC3 85364 hgsc.bcm.edu 37 20 278733 278733 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC3 85364 hgsc.bcm.edu 37 20 278734 278734 + Silent SNP C C T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC5 203430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 77913051 77913051 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC5 203430 broad.mit.edu;ucsc.edu 37 X 77913714 77913714 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC6 79670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88938317 88938317 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC6 79670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88938408 88938408 + Missense_Mutation SNP C C G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC6 79670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88960584 88960584 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC6 79670 hgsc.bcm.edu 37 9 88937854 88937854 + Missense_Mutation SNP T T A rs77621374 unknown TCGA-CJ-4891-01A-01D-1373-10 TCGA-CJ-4891-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZCCHC6 79670 hgsc.bcm.edu 37 9 88937854 88937854 + Missense_Mutation SNP T T A rs77621374 unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZCCHC6 79670 hgsc.bcm.edu;ucsc.edu 37 9 88903626 88903626 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZCCHC8 55596 broad.mit.edu 37 12 122957982 122957982 + 3'UTR SNP C T T novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC8 55596 broad.mit.edu 37 12 122962860 122962860 + Intron DEL A - - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZCCHC8 55596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122962402 122962402 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC8 55596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 122967187 122967187 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC9 84240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80600728 80600728 + Missense_Mutation SNP A A G novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCCHC9 84240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80600797 80600797 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZCWPW1 55063 hgsc.bcm.edu 37 7 100004924 100004924 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZCWPW1 55063 hgsc.bcm.edu;ucsc.edu 37 7 100017327 100017327 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDBF2 57683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207170060 207170060 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDBF2 57683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207174280 207174280 + Silent SNP G G T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDBF2 57683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207174466 207174466 + Missense_Mutation SNP A A T novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDBF2 57683 hgsc.bcm.edu 37 2 207170013 207170013 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDBF2 57683 hgsc.bcm.edu 37 2 207170632 207170632 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDBF2 57683 hgsc.bcm.edu 37 2 207175938 207175938 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDBF2 57683 hgsc.bcm.edu;ucsc.edu 37 2 207169576 207169576 + Silent SNP C C G novel unknown TCGA-BP-4345-01A-01D-1366-10 TCGA-BP-4345-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDBF2 57683 hgsc.bcm.edu;ucsc.edu 37 2 207171516 207171516 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC11 79844 broad.mit.edu 37 5 850746 850746 + 5'UTR SNP G A A rs111620039 bycluster;by1000genomes TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC11 79844 hgsc.bcm.edu;ucsc.edu 37 5 819652 819653 + Frame_Shift_Ins INS - - C novel unknown TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC11 79844 hgsc.bcm.edu;ucsc.edu 37 5 819734 819734 + Intron SNP G G C novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC1 29800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67440199 67440199 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC1 29800 broad.mit.edu;ucsc.edu 37 16 67429119 67429119 + Missense_Mutation SNP G T T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC1 29800 hgsc.bcm.edu 37 16 67428940 67428940 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC1 29800 hgsc.bcm.edu 37 16 67428940 67428940 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC13 54503 broad.mit.edu 37 11 19197719 19197720 + 3'UTR INS - A A novel unknown TCGA-B0-5400-01A-01D-1501-10 TCGA-B0-5400-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC13 54503 broad.mit.edu 37 11 19197719 19197720 + 3'UTR INS - A A novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC13 54503 broad.mit.edu 37 11 19197720 19197720 + 3'UTR DEL A - - novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC13 54503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19187855 19187855 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC15 158866 hgsc.bcm.edu 37 X 74649805 74649805 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC16 84287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99211881 99211881 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC16 84287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99213291 99213291 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC16 84287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99213292 99213292 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC17 23390 broad.mit.edu 37 12 77247216 77247216 + 3'UTR DEL T - - rs10714920 unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC18 84243 broad.mit.edu 37 1 27176851 27176851 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC18 84243 broad.mit.edu 37 1 27180396 27180396 + 3'UTR SNP C T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC18 84243 broad.mit.edu;hgsc.bcm.edu 37 1 27180348 27180348 + 3'UTR SNP C C T novel unknown TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC19 131540 broad.mit.edu 37 3 195934301 195934301 + Frame_Shift_Del DEL C - - novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC19 131540 hgsc.bcm.edu;ucsc.edu 37 3 195925751 195925751 + Splice_Region SNP C C A novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC21 340481 broad.mit.edu 37 9 14614076 14614076 + Intron DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC22 283576 broad.mit.edu;hgsc.bcm.edu 37 14 77600035 77600035 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC22 283576 hgsc.bcm.edu 37 14 77605834 77605834 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC23 254887 broad.mit.edu 37 3 113667569 113667569 + Intron SNP C T T novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC2 51201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17067943 17067943 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC2 51201 hgsc.bcm.edu 37 8 17067950 17067950 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC3 51304 broad.mit.edu 37 3 44968020 44968020 + 3'UTR DEL T - - rs34221393 unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC5 25921 broad.mit.edu 37 11 57440359 57440360 + 5'UTR INS - C C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC5 25921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57457522 57457522 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC5 25921 broad.mit.edu;ucsc.edu 37 11 57440598 57440598 + Missense_Mutation SNP C A A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC5 25921 hgsc.bcm.edu;ucsc.edu 37 11 57440565 57440565 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC6 64429 broad.mit.edu 37 10 114190471 114190471 + 3'UTR SNP C A A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZDHHC6 64429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 114201991 114201991 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC8 29801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 20127299 20127299 + Silent SNP C C A novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC8 29801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 20130731 20130731 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC8 29801 hgsc.bcm.edu 37 22 20130989 20130990 + Frame_Shift_Ins INS - - G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC9 51114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128962964 128962964 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC9 51114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128975882 128975882 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZDHHC9 51114 hgsc.bcm.edu 37 X 128948750 128948750 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZDHHC9 51114 hgsc.bcm.edu;ucsc.edu 37 X 128946779 128946779 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZEB1 6935 broad.mit.edu 37 10 31609541 31609541 + Intron DEL A - - novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZEB1 6935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31799802 31799805 + In_Frame_Del DEL AAGT AAGT - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 AAGT AAGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZEB1 6935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31810616 31810616 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZEB1 6935 hgsc.bcm.edu;ucsc.edu 37 10 31812969 31812969 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZEB2 9839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 145157350 145157350 + Missense_Mutation SNP G G T novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZEB2 9839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 145157442 145157442 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZEB2 9839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 145157472 145157472 + Missense_Mutation SNP C C G novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZEB2 9839 hgsc.bcm.edu 37 2 145155963 145155963 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZER1 10444 broad.mit.edu 37 9 131514950 131514950 + Splice_Site SNP A C C novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZER1 10444 hgsc.bcm.edu;ucsc.edu 37 9 131502291 131502291 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFAND1 79752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 82626242 82626242 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220072989 220072989 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220072990 220072990 + Silent SNP C C A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220073018 220073018 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220073738 220073738 + Silent SNP G G A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAND2B 130617 broad.mit.edu;ucsc.edu 37 2 220072989 220072989 + Missense_Mutation SNP T C C novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFAND3 60685 broad.mit.edu 37 6 38120404 38120404 + 3'UTR DEL T - - rs139133392 bycluster;by1000genomes;alternate_allele TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFAND3 60685 broad.mit.edu 37 6 38121454 38121454 + 3'UTR DEL G - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFAND5 7763 broad.mit.edu;ucsc.edu 37 9 74971943 74971943 + Nonsense_Mutation SNP G A A novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFAT 57623 broad.mit.edu 37 8 135521987 135521987 + Nonsense_Mutation SNP G A A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFAT 57623 broad.mit.edu 37 8 135577862 135577862 + Intron DEL C - - novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFAT 57623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 135524782 135524782 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAT 57623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 135622881 135622881 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFAT 57623 hgsc.bcm.edu 37 8 135621044 135621044 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFAT 57623 hgsc.bcm.edu;ucsc.edu 37 8 135613761 135613761 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFC3H1 196441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 72026187 72026187 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFC3H1 196441 hgsc.bcm.edu 37 12 72004894 72004894 + Intron SNP A A G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFC3H1 196441 hgsc.bcm.edu 37 12 72004898 72004898 + Intron SNP A A T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 broad.mit.edu 37 16 72818152 72818152 + 3'UTR DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFHX3 463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72829790 72829790 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72830806 72830806 + Silent SNP A A T novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72831125 72831125 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72991477 72991477 + Silent SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72993014 72993014 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 hgsc.bcm.edu 37 16 72821621 72821621 + Silent SNP G G A novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 hgsc.bcm.edu 37 16 72991372 72991372 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFHX3 463 hgsc.bcm.edu 37 16 72991660 72991667 + Frame_Shift_Del DEL CGGCGAGG CGGCGAGG - novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 CGGCGAGG CGGCGAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 hgsc.bcm.edu 37 16 72992581 72992581 + Missense_Mutation SNP G G T rs143031716 unknown;alternate_allele TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 hgsc.bcm.edu 37 16 72992626 72992626 + Silent SNP C C T novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX3 463 hgsc.bcm.edu;ucsc.edu 37 16 72982971 72982971 + Intron SNP C C A novel unknown TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX4 79776 broad.mit.edu 37 8 77761277 77761277 + Silent SNP T G G novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFHX4 79776 broad.mit.edu 37 8 77768349 77768349 + Silent SNP T C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFHX4 79776 broad.mit.edu 37 8 77776069 77776069 + Silent SNP T C C novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu 37 8 77616514 77616514 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77617698 77617698 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77618282 77618282 + Nonsense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77766976 77766976 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77768068 77768068 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77776702 77776702 + Silent SNP G G A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFHX4 79776 hgsc.bcm.edu;ucsc.edu 37 8 77762484 77762484 + Missense_Mutation SNP C C G novel unknown TCGA-DV-5568-01A-01D-1534-10 TCGA-DV-5568-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP106 64397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42742412 42742412 + Silent SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP106 64397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42743699 42743699 + Silent SNP A A G novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP106 64397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42744055 42744055 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP106 64397 hgsc.bcm.edu;ucsc.edu 37 15 42749284 42749284 + Silent SNP A A G novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP112 7771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44833539 44833539 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP112 7771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44833609 44833609 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP112 7771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44840845 44840845 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP112 7771 hgsc.bcm.edu 37 19 44832764 44832764 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP112 7771 hgsc.bcm.edu;ucsc.edu 37 19 44832084 44832084 + Silent SNP C C T rs61733035 bycluster;byfrequency;by1000genomes TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP112 7771 hgsc.bcm.edu;ucsc.edu 37 19 44832958 44832958 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP112(dist=3125) 0 hgsc.bcm.edu 37 19 44863981 44863981 + IGR SNP T T A novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP14 57677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36831956 36831956 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP14 57677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36832152 36832152 + Silent SNP T T C novel unknown TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP161 0 broad.mit.edu 37 18 5290766 5290769 + 3'UTR DEL CCAC - - novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 CCAC CCAC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP28 140612 broad.mit.edu 37 19 57062145 57062145 + Intron DEL C - - novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP28 140612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57065721 57065721 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP28 140612 hgsc.bcm.edu;ucsc.edu 37 19 57065085 57065085 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP30 22835 broad.mit.edu 37 19 38125631 38125631 + 3'UTR SNP T C C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP3 124961 broad.mit.edu 37 17 4996471 4996472 + 3'UTR DEL TT - - rs72184758 unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP3 124961 broad.mit.edu 37 17 4996471 4996472 + 3'UTR DEL TT - - rs72184758 unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP3 124961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4995604 4995604 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP36L1 677 broad.mit.edu 37 14 69256177 69256177 + 3'UTR SNP A G G novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP36L1 677 hgsc.bcm.edu;ucsc.edu 37 14 69257206 69257207 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP36L2 678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43452170 43452170 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP36L2 678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43452470 43452470 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP36L2 678 hgsc.bcm.edu 37 2 43452740 43452740 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP37 7539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 115806234 115806234 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP37 7539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 115818875 115818875 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP42 132625 broad.mit.edu 37 4 188925071 188925071 + 3'UTR DEL T - - novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFP42 132625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 188924839 188924839 + Missense_Mutation SNP A A G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP42 132625 hgsc.bcm.edu;ucsc.edu 37 4 188923991 188923991 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP64 55734 hgsc.bcm.edu 37 20 50768804 50768804 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFP64 55734 hgsc.bcm.edu;ucsc.edu 37 20 50776871 50776871 + Frame_Shift_Del DEL C C - novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP82 284406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36884269 36884269 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP82 284406 hgsc.bcm.edu;ucsc.edu 37 19 36884285 36884292 + Frame_Shift_Del DEL AAAGGCCT AAAGGCCT - novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 AAAGGCCT AAAGGCCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP90 146198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68598080 68598080 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP90 146198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68598499 68598499 + Silent SNP T T C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP91 80829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58377371 58377371 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP91 80829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58381764 58381764 + Silent SNP A A G novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFP91 80829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58384897 58384897 + Silent SNP C C A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPL1 7542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64854837 64854837 + Silent SNP C C A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM1 161882 hgsc.bcm.edu 37 16 88584876 88584876 + Intron SNP T T A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM1(dist=18663) 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88620237 88620237 + IGR SNP T T C novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106801068 106801068 + Missense_Mutation SNP T T G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106810965 106810965 + Silent SNP T T C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106811085 106811085 + Silent SNP C C A novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106813474 106813474 + Silent SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106813670 106813670 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106813890 106813890 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106814187 106814187 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106815071 106815071 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106815671 106815671 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFPM2 23414 hgsc.bcm.edu;ucsc.edu 37 8 106815608 106815608 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFR2 23217 broad.mit.edu 37 19 3831667 3831667 + Missense_Mutation SNP C T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFR2 23217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3813874 3813874 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR2 23217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3813939 3813939 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR2 23217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3813948 3813948 + Silent SNP G G T novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR2 23217 hgsc.bcm.edu 37 19 3833722 3833722 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFR2 23217 hgsc.bcm.edu 37 19 3833722 3833722 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFR 51663 broad.mit.edu 37 5 32355672 32355672 + 3'UTR DEL T - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFR 51663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32390443 32390443 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR 51663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32403288 32403288 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR 51663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32404076 32404076 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR 51663 hgsc.bcm.edu 37 5 32390431 32390431 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4693-01A-01D-1361-10 TCGA-B0-4693-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFR 51663 hgsc.bcm.edu 37 5 32400303 32400303 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFR 51663 hgsc.bcm.edu 37 5 32415213 32415214 + Frame_Shift_Ins INS - - G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFR 51663 hgsc.bcm.edu;ucsc.edu 37 5 32355948 32355948 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFX 7543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24197791 24197791 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFX 7543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24228654 24228654 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4827-01A-02D-1421-08 TCGA-B0-4827-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFX 7543 hgsc.bcm.edu;ucsc.edu 37 X 24197441 24197458 + In_Frame_Del DEL TTATTGAGGACGTTGTTA TTATTGAGGACGTTGTTA - novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 TTATTGAGGACGTTGTTA TTATTGAGGACGTTGTTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFY 7544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 2829144 2829144 + Nonsense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFY 7544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 2829189 2829189 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE1 53349 broad.mit.edu 37 14 73465019 73465019 + Missense_Mutation SNP G T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFYVE16 9765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79769670 79769670 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE19 84936 broad.mit.edu;hgsc.bcm.edu 37 15 41105065 41105065 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68234548 68234548 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68249593 68249593 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68249594 68249594 + Missense_Mutation SNP A A T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68270971 68270971 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68274120 68274120 + Missense_Mutation SNP C C T novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE26 23503 hgsc.bcm.edu 37 14 68229089 68229089 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE26 23503 hgsc.bcm.edu 37 14 68251807 68251807 + Silent SNP T T C novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE26 23503 hgsc.bcm.edu 37 14 68251809 68251809 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE26 23503 hgsc.bcm.edu 37 14 68251809 68251809 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE26 23503 hgsc.bcm.edu 37 14 68256097 68256097 + Silent SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE26 23503 hgsc.bcm.edu;ucsc.edu 37 14 68260458 68260458 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE27 118813 broad.mit.edu;hgsc.bcm.edu 37 10 99512825 99512825 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE27 118813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99509236 99509236 + Missense_Mutation SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE27 118813 hgsc.bcm.edu 37 10 99510142 99510142 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE27 118813 hgsc.bcm.edu;ucsc.edu 37 10 99504492 99504499 + Frame_Shift_Del DEL GGTACTCA GGTACTCA - novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 GGTACTCA GGTACTCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE28 57732 broad.mit.edu 37 4 2271922 2271923 + 3'UTR DEL GA - - novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 GA GA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZFYVE28 57732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2306052 2306052 + Missense_Mutation SNP G G A rs117669252 bycluster;byfrequency;by1000genomes TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE9 9372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 52703253 52703253 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZFYVE9 9372 hgsc.bcm.edu 37 1 52703736 52703736 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4789-01A-01D-1373-10 TCGA-BP-4789-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE9 9372 hgsc.bcm.edu 37 1 52703736 52703736 + Nonsense_Mutation SNP T T A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZFYVE9 9372 hgsc.bcm.edu 37 1 52704839 52704839 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZGLP1 100125288 broad.mit.edu 37 19 10419249 10419249 + Missense_Mutation SNP C T T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZGPAT 84619 broad.mit.edu;ucsc.edu 37 20 62366756 62366756 + Missense_Mutation SNP G C C rs17855481 bycluster;alternate_allele TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZHX1 11244 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 124265779 124265779 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZHX1 11244 hgsc.bcm.edu 37 8 124267674 124267674 + Silent SNP A A G novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZHX2 22882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 123963970 123963970 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZHX2 22882 hgsc.bcm.edu 37 8 123964182 123964182 + Silent SNP T T A novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZHX3 23051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39831405 39831405 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZHX3 23051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39831542 39831542 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZHX3 23051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39832047 39832047 + Nonsense_Mutation SNP C C A novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZHX3 23051 broad.mit.edu;ucsc.edu 37 20 39831543 39831543 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZHX3 23051 hgsc.bcm.edu 37 20 39832082 39832082 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZIC1 7545 broad.mit.edu 37 3 147131448 147131448 + 3'UTR SNP C G G novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZIC4 84107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 147114035 147114035 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZIC4 84107 broad.mit.edu;ucsc.edu 37 3 147106623 147106623 + 3'UTR SNP C T T novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZIC5 85416 broad.mit.edu;hgsc.bcm.edu 37 13 100622569 100622569 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZIK1 284307 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58101848 58101848 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZIM3 114026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57646742 57646742 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZIM3 114026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57646763 57646763 + Silent SNP C C T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN1 7586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99631276 99631276 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN1 7586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99631582 99631582 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN1 7586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99631591 99631591 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5695-01A-11D-1534-10 TCGA-B0-5695-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN1 7586 hgsc.bcm.edu;ucsc.edu 37 7 99631799 99631799 + Silent SNP G G A novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZKSCAN2 342357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 25266607 25266607 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN2 342357 hgsc.bcm.edu;ucsc.edu 37 16 25264266 25264266 + Splice_Site SNP C C T novel unknown TCGA-AK-3434-01A-02D-1361-10 TCGA-AK-3434-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZKSCAN3 80317 broad.mit.edu;hgsc.bcm.edu 37 6 28333631 28333631 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN3 80317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28329175 28329175 + Silent SNP A A G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN3 80317 hgsc.bcm.edu 37 6 28327609 28327635 + In_Frame_Del DEL GGAGCAGATCCTGGAGCTGCTGGTGCT GGAGCAGATCCTGGAGCTGCTGGTGCT - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 GGAGCAGATCCTGGAGCTGCTGGTGCT GGAGCAGATCCTGGAGCTGCTGGTGCT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN3 80317 hgsc.bcm.edu;ucsc.edu 37 6 28334004 28334004 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZKSCAN4 387032 broad.mit.edu 37 6 28212765 28212765 + 3'UTR SNP T C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZKSCAN4 387032 broad.mit.edu 37 6 28219924 28219924 + 5'UTR DEL A - - novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMAT1 84460 broad.mit.edu;hgsc.bcm.edu 37 X 101138801 101138810 + Frame_Shift_Del DEL CCTGCTTGAT CCTGCTTGAT - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 CCTGCTTGAT CCTGCTTGAT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMAT1 84460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101138798 101138799 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMAT2 153527 broad.mit.edu 37 5 140085370 140085370 + 3'UTR SNP C A A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMAT2 153527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140085215 140085215 + Silent SNP G G T rs143727913 byfrequency;alternate_allele TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMAT4 79698 hgsc.bcm.edu 37 8 40683123 40683123 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMAT5 55954 hgsc.bcm.edu 37 22 30134342 30134342 + Silent SNP C C A novel unknown TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMAT5 55954 hgsc.bcm.edu 37 22 30134342 30134342 + Silent SNP C C A novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMIZ1 57178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 81065919 81065919 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5907-01A-11D-1669-08 TCGA-EU-5907-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMIZ1 57178 hgsc.bcm.edu 37 10 81070821 81070822 + Frame_Shift_Ins INS - - C novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMIZ2 83637 broad.mit.edu 37 7 44801378 44801378 + Missense_Mutation SNP C G G novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMIZ2 83637 broad.mit.edu 37 7 44805642 44805642 + Intron SNP G A A novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMIZ2 83637 broad.mit.edu;hgsc.bcm.edu 37 7 44796728 44796728 + Silent SNP G G A novel unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMIZ2 83637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 44805139 44805139 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMPSTE24 10269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40726535 40726535 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMPSTE24 10269 hgsc.bcm.edu;ucsc.edu 37 1 40735725 40735725 + Silent SNP C C T novel unknown TCGA-B0-4844-01A-01D-1361-10 TCGA-B0-4844-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMPSTE24 10269 hgsc.bcm.edu;ucsc.edu 37 1 40756542 40756543 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu 37 1 35578967 35578967 + Silent SNP G G A novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35578915 35578915 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35579780 35579780 + Missense_Mutation SNP A A T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35579833 35579833 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35580008 35580008 + Silent SNP C C A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35580687 35580687 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35580688 35580688 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM1 79830 hgsc.bcm.edu 37 1 35570190 35570190 + Missense_Mutation SNP A A C novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYM1 79830 hgsc.bcm.edu;ucsc.edu 37 1 35576005 35576005 + Silent SNP T T C novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYM2 7750 broad.mit.edu 37 13 20660248 20660248 + 3'UTR SNP C A A novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM2 7750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20567391 20567391 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM2 7750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20638656 20638656 + Missense_Mutation SNP G G C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM2 7750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20657807 20657807 + Missense_Mutation SNP A A G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM2 7750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20660011 20660011 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM2 7750 broad.mit.edu;ucsc.edu 37 13 20601355 20601355 + Missense_Mutation SNP T G G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM2 7750 hgsc.bcm.edu;ucsc.edu 37 13 20626382 20626382 + Intron SNP A A G novel unknown TCGA-CZ-4865-01A-02D-1501-10 TCGA-CZ-4865-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM2 7750 hgsc.bcm.edu;ucsc.edu 37 13 20656244 20656244 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYM3 9203 broad.mit.edu 37 X 70472956 70472956 + Silent SNP A G G novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM3 9203 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70467240 70467240 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM3 9203 hgsc.bcm.edu 37 X 70469018 70469018 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYM4 9202 broad.mit.edu 37 1 35836039 35836039 + Nonsense_Mutation SNP C A A novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 Illumina GAIIx ZMYM4 9202 broad.mit.edu;hgsc.bcm.edu 37 1 35836041 35836041 + Missense_Mutation SNP G G T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZMYM4 9202 broad.mit.edu;hgsc.bcm.edu 37 1 35870746 35870746 + Nonsense_Mutation SNP G G A novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZMYM4 9202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35857906 35857906 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZMYM4 9202 broad.mit.edu;ucsc.edu 37 1 35853066 35853066 + Silent SNP T C C novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM4 9202 hgsc.bcm.edu;ucsc.edu 37 1 35790956 35790956 + Intron SNP T T C novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM4 9202 hgsc.bcm.edu;ucsc.edu 37 1 35859252 35859252 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYM4 9202 hgsc.bcm.edu;ucsc.edu 37 1 35871038 35871038 + Silent SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C C G C C Unknown Unknown Somatic Phase_I Capture 454 SOLID ZMYM5 9205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20398642 20398642 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYM5 9205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20426164 20426164 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM6 9204 broad.mit.edu 37 1 35453715 35453715 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM6 9204 broad.mit.edu 37 1 35457576 35457576 + Intron DEL A - - novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM6 9204 broad.mit.edu 37 1 35484838 35484838 + Intron SNP A C C novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYM6 9204 broad.mit.edu;hgsc.bcm.edu 37 1 35457966 35457966 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM6 9204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35480663 35480663 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYM6 9204 hgsc.bcm.edu 37 1 35454280 35454280 + Silent SNP T T C novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYND10 51364 broad.mit.edu;hgsc.bcm.edu 37 3 50378855 50378855 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND10 51364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50380356 50380356 + Silent SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND11 10771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 225962 225962 + Silent SNP T T C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND11 10771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 298337 298337 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5182-01A-01D-1429-08 TCGA-BP-5182-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND15 84225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4647403 4647403 + Splice_Site SNP G G T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND15 84225 hgsc.bcm.edu 37 17 4645276 4645276 + Silent SNP T T C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYND17 0 broad.mit.edu 37 10 75182782 75182783 + 3'UTR INS - GA GA novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYND17 0 broad.mit.edu 37 10 75184106 75184106 + 3'UTR SNP G A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYND17 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75185797 75185797 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND17 0 hgsc.bcm.edu 37 10 75186103 75186103 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZMYND8 23613 broad.mit.edu 37 20 45982368 45982368 + Intron DEL A - - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZMYND8 23613 broad.mit.edu;hgsc.bcm.edu 37 20 45927547 45927547 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZMYND8 23613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45853096 45853096 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF100 163227 broad.mit.edu;hgsc.bcm.edu 37 19 21909967 21909967 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF100 163227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21909595 21909595 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF100 163227 hgsc.bcm.edu 37 19 21910451 21910451 + Silent SNP A A C rs75062026 unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF100 163227 hgsc.bcm.edu;ucsc.edu 37 19 21910711 21910712 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF107 51427 broad.mit.edu 37 7 64169511 64169511 + 3'UTR SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF107 51427 broad.mit.edu;hgsc.bcm.edu 37 7 64167976 64167976 + Frame_Shift_Del DEL A A - novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF107 51427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 64166913 64166913 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF107 51427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 64168953 64168953 + Silent SNP C C T rs139989226 unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF107 51427 hgsc.bcm.edu 37 7 64168486 64168486 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF114 163071 hgsc.bcm.edu 37 19 48783054 48783054 + 5'UTR SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF117 51351 broad.mit.edu 37 7 64437831 64437831 + 3'UTR SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF117 51351 hgsc.bcm.edu 37 7 64451800 64451800 + 5'Promoter SNP C C G novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF121 7675 hgsc.bcm.edu 37 19 9678733 9678733 + Intron SNP T T C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF121 7675 hgsc.bcm.edu;ucsc.edu 37 19 9676687 9676687 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF124 7678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247322364 247322364 + Silent SNP G G A novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF12 7559 broad.mit.edu;hgsc.bcm.edu 37 7 6731607 6731607 + Silent SNP C C T novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF12 7559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6731954 6731954 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF131 7690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43161423 43161423 + Silent SNP A A G novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF131 7690 hgsc.bcm.edu;ucsc.edu 37 5 43173498 43173498 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF131 7690 hgsc.bcm.edu;ucsc.edu 37 5 43175076 43175076 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF132 7691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58945135 58945135 + Missense_Mutation SNP A A T rs185952330 by1000genomes;alternate_allele TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF132 7691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58948571 58948571 + Nonsense_Mutation SNP C C T novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF133 7692 hgsc.bcm.edu 37 20 18297069 18297069 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF134 7693 hgsc.bcm.edu 37 19 58132725 58132725 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF136 7695 broad.mit.edu 37 19 12298092 12298092 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF141 7700 broad.mit.edu;hgsc.bcm.edu 37 4 367075 367075 + Silent SNP C C T novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF141 7700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 367443 367443 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF141 7700 hgsc.bcm.edu 37 4 367267 367267 + Silent SNP T T C novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF142 7701 hgsc.bcm.edu;ucsc.edu 37 2 219508795 219508795 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF148 7707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124951653 124951653 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF148 7707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 125032327 125032327 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF155 7711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44501334 44501334 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF160 90338 broad.mit.edu 37 19 53571306 53571306 + 3'UTR SNP T C C rs2288421 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF160 90338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53577475 53577475 + Silent SNP C C T novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF165 7718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28053590 28053590 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF165 7718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28054028 28054028 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF16 7564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 146156465 146156465 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF16 7564 hgsc.bcm.edu 37 8 146157099 146157099 + Silent SNP G G A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF169 169841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 97055309 97055309 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF169 169841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 97062172 97062172 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF174 7727 broad.mit.edu;hgsc.bcm.edu 37 16 3451937 3451937 + 5'UTR SNP T T C novel unknown TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF175 7728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52084648 52084648 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF175 7728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52090388 52090388 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF175 7728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52090780 52090780 + Missense_Mutation SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF17 7565 broad.mit.edu 37 19 57922632 57922632 + 5'UTR SNP C T T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF17 7565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57931180 57931180 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF180 7733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45004270 45004270 + Missense_Mutation SNP G G A novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF180 7733 hgsc.bcm.edu 37 19 45001361 45001361 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF180 7733 hgsc.bcm.edu 37 19 45004223 45004223 + Intron SNP G G T novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF180 7733 hgsc.bcm.edu;ucsc.edu 37 19 44982265 44982265 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF181 339318 broad.mit.edu 37 19 35225746 35225754 + 5'UTR DEL GTTCCCAGG - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 GTTCCCAGG GTTCCCAGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF181 339318 broad.mit.edu;hgsc.bcm.edu 37 19 35232767 35232767 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF182 7569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47836772 47836772 + Silent SNP T T C novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF182 7569 hgsc.bcm.edu;ucsc.edu 37 X 47836677 47836677 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF184 7738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27420046 27420046 + Nonsense_Mutation SNP G G C novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF184 7738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27420285 27420285 + Missense_Mutation SNP T T A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF184 7738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27420477 27420477 + Silent SNP G G A novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF184 7738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27420988 27420988 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF185 7739 broad.mit.edu;hgsc.bcm.edu 37 X 152128271 152128271 + Missense_Mutation SNP G G C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF185 7739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152085828 152085828 + Splice_Site SNP G G C novel unknown TCGA-B2-4101-01A-02D-1361-10 TCGA-B2-4101-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF185 7739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152086678 152086678 + Silent SNP C C T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF185 7739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152132417 152132417 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF187 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28244851 28244851 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF187 0 hgsc.bcm.edu 37 6 28239931 28239932 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF189 7743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104162271 104162271 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF192 0 hgsc.bcm.edu 37 6 28116327 28116327 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF192 0 hgsc.bcm.edu 37 6 28116332 28116332 + Silent SNP G G A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF193 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28195519 28195519 + Missense_Mutation SNP C C G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF195 7748 broad.mit.edu;ucsc.edu 37 11 3380467 3380467 + Missense_Mutation SNP A G G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF195 7748 hgsc.bcm.edu;ucsc.edu 37 11 3380733 3380733 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF19 7567 hgsc.bcm.edu;ucsc.edu 37 16 71512809 71512809 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF200 7752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3274074 3274074 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF202 7753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123598248 123598248 + Nonsense_Mutation SNP C C T novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF20 7568 broad.mit.edu 37 19 12258560 12258560 + Translation_Start_Site SNP G T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF20 7568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12243969 12243969 + Nonsense_Mutation SNP A A T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF207 7756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30692370 30692370 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF207 7756 broad.mit.edu;ucsc.edu 37 17 30694855 30694855 + Missense_Mutation SNP C A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF208 7757 broad.mit.edu 37 19 22154068 22154068 + Silent SNP T C C novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF208 7757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 22170044 22170044 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF208 7757 hgsc.bcm.edu 37 19 22156286 22156286 + Missense_Mutation SNP C C T novel unknown TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF211 10520 broad.mit.edu 37 19 58153552 58153552 + 3'UTR SNP G A A novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF211 10520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58153167 58153167 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF212 7988 broad.mit.edu 37 7 148952668 148952668 + 3'UTR SNP A G G novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF212 7988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148947875 148947875 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF212 7988 hgsc.bcm.edu 37 7 148947986 148947986 + Intron SNP T T A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF212 7988 hgsc.bcm.edu;ucsc.edu 37 7 148949285 148949285 + Intron SNP A A G novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF213 7760 broad.mit.edu 37 16 3188358 3188358 + Intron SNP G A A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF213 7760 broad.mit.edu 37 16 3189333 3189333 + Intron DEL T - - novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF214 7761 hgsc.bcm.edu;ucsc.edu 37 11 7022631 7022631 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF215 7762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6953811 6953811 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF215 7762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6964378 6964378 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF215 7762 broad.mit.edu;ucsc.edu 37 11 6977426 6977426 + Silent SNP C A A novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF217 7764 hgsc.bcm.edu 37 20 52192307 52192307 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3450-01A-02D-1361-10 TCGA-AK-3450-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF221 7638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44469419 44469419 + Silent SNP C C T novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF221 7638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44470618 44470618 + Silent SNP A A C novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF223 7766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44570596 44570596 + Silent SNP G G A novel unknown TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF223 7766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44571333 44571333 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5191-01A-01D-1429-08 TCGA-BP-5191-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF224 7767 broad.mit.edu;hgsc.bcm.edu 37 19 44610924 44610924 + Missense_Mutation SNP A A G novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF225 7768 hgsc.bcm.edu;ucsc.edu 37 19 44636673 44636673 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF226 7769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44680985 44680985 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF22 7570 broad.mit.edu;ucsc.edu 37 10 45499247 45499247 + Missense_Mutation SNP G T T novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF227 7770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44740521 44740521 + Silent SNP T T C novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF227 7770 hgsc.bcm.edu 37 19 44739196 44739196 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF232 7775 broad.mit.edu 37 17 5012545 5012545 + Intron SNP A G G novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF232 7775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5009701 5009701 + Silent SNP A A G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF233 353355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44777290 44777290 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF233 353355 hgsc.bcm.edu 37 19 44778796 44778796 + Frame_Shift_Del DEL G G - rs146145111 bycluster;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF233 353355 hgsc.bcm.edu 37 19 44778797 44778797 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF234 10780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44661744 44661744 + Silent SNP G G A rs186620429 by1000genomes TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF234 10780 broad.mit.edu;ucsc.edu 37 19 44660625 44660625 + Missense_Mutation SNP G C C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF234 10780 hgsc.bcm.edu;ucsc.edu 37 19 44648828 44648828 + Intron SNP T T C novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF235 9310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44792129 44792129 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF236 7776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 74620408 74620408 + Silent SNP G G A novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF236 7776 hgsc.bcm.edu;ucsc.edu 37 18 74624247 74624247 + Frame_Shift_Del DEL G G - novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF23 7571 broad.mit.edu 37 16 71487199 71487199 + Missense_Mutation SNP A T T novel unknown TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF238 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 244218338 244218338 + Missense_Mutation SNP G G T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF238(dist=7423) 0 hgsc.bcm.edu;ucsc.edu 37 1 244228201 244228201 + IGR SNP C C G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF24 7572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32919802 32919802 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF248 57209 hgsc.bcm.edu;ucsc.edu 37 10 38121983 38121983 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF250 58500 hgsc.bcm.edu;ucsc.edu 37 8 146107413 146107413 + Silent SNP G G A novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF250 58500 hgsc.bcm.edu;ucsc.edu 37 8 146107815 146107816 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF252 0 broad.mit.edu 37 8 146202910 146202910 + Frame_Shift_Del DEL T - - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF253 56242 broad.mit.edu 37 19 20003794 20003795 + 3'UTR INS - TTT TTT rs113882364 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF253 56242 broad.mit.edu 37 19 20003795 20003795 + 3'UTR DEL T - - rs113882364 bycluster;by1000genomes;alternate_allele TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF253 56242 broad.mit.edu 37 19 20003795 20003795 + 3'UTR DEL T - - rs113882364 bycluster;by1000genomes;alternate_allele TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF253 56242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19976780 19976780 + 5'UTR SNP A A G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF256 10172 broad.mit.edu 37 19 58453894 58453894 + Silent SNP T A A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF256 10172 broad.mit.edu 37 19 58453896 58453896 + Missense_Mutation SNP T G G novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF257 113835 broad.mit.edu;hgsc.bcm.edu 37 19 22271484 22271484 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF257 113835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 22270900 22270900 + Silent SNP C C A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF257 113835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 22271280 22271280 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF260 339324 broad.mit.edu 37 19 37004832 37004832 + 3'UTR SNP T C C novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF260 339324 broad.mit.edu 37 19 37004897 37004897 + 3'UTR SNP G A A novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF260 339324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37005751 37005751 + Silent SNP A A G novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF263 10127 broad.mit.edu 37 16 3333550 3333551 + 5'UTR DEL TA - - rs139235136 bycluster;by1000genomes TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF264 9422 broad.mit.edu 37 19 57724481 57724481 + 3'UTR DEL G - - novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF264 9422 broad.mit.edu 37 19 57724484 57724485 + 3'UTR INS - AT AT novel unknown TCGA-B2-3924-01A-02D-1386-10 TCGA-B2-3924-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF264 9422 broad.mit.edu 37 19 57731931 57731931 + 3'UTR DEL T - - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF264 9422 hgsc.bcm.edu;ucsc.edu 37 19 57706798 57706798 + Intron SNP T T A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF266 10781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9525150 9525150 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF267 10308 broad.mit.edu 37 16 31928043 31928044 + 3'UTR INS - TT TT novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF267 10308 broad.mit.edu 37 16 31928043 31928044 + 3'UTR INS - TT TT novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF267 10308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31927436 31927436 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF268 10795 hgsc.bcm.edu;ucsc.edu 37 12 133779908 133779908 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF273 10793 hgsc.bcm.edu 37 7 64388663 64388663 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF273 10793 hgsc.bcm.edu;ucsc.edu 37 7 64388663 64388663 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF274 10782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58695360 58695360 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF274 10782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58723904 58723904 + Silent SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF274 10782 hgsc.bcm.edu 37 19 58718359 58718360 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF274 10782 hgsc.bcm.edu 37 19 58718359 58718360 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF274 10782 hgsc.bcm.edu 37 19 58718360 58718361 + Frame_Shift_Ins INS - - G rs78144540 bycluster;by1000genomes TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF275 10838 broad.mit.edu 37 X 152615571 152615571 + 3'UTR DEL T - - novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF275 10838 hgsc.bcm.edu 37 X 152610228 152610228 + Intron SNP A A G novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF275 10838 hgsc.bcm.edu 37 X 152612540 152612540 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF2 7549 hgsc.bcm.edu 37 2 95847047 95847047 + Silent SNP G G A rs112887855 unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF2 7549 hgsc.bcm.edu;ucsc.edu 37 2 95847736 95847736 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF276 92822 broad.mit.edu 37 16 89807045 89807046 + 3'UTR DEL AA - - novel unknown TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF276 92822 broad.mit.edu;hgsc.bcm.edu 37 16 89789515 89789515 + Intron SNP C C G novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF276 92822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89789584 89789584 + Silent SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF276 92822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89793740 89793740 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF276 92822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89804478 89804478 + Missense_Mutation SNP G G C novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280B 140883 hgsc.bcm.edu 37 22 22842518 22842518 + Silent SNP G G A rs73156173 bycluster;byfrequency TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280C 55609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129343630 129343630 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280C 55609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129343631 129343631 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3316-01A-01D-0966-08 TCGA-A3-3316-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280C 55609 hgsc.bcm.edu;ucsc.edu 37 X 129354384 129354384 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280C 55609 hgsc.bcm.edu;ucsc.edu 37 X 129377594 129377594 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4340-01A-01D-1366-10 TCGA-BP-4340-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF280D 54816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56924221 56924221 + Silent SNP A A C novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280D 54816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56959007 56959007 + Missense_Mutation SNP G G A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280D 54816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56993407 56993407 + Missense_Mutation SNP A A G novel unknown TCGA-BP-5192-01A-01D-1429-08 TCGA-BP-5192-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF280D 54816 hgsc.bcm.edu;ucsc.edu 37 15 56923779 56923779 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF283 284349 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44352476 44352476 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF284 342909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44586259 44586259 + Splice_Site SNP G G A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF284 342909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44589959 44589959 + Missense_Mutation SNP G G A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF285 26974 hgsc.bcm.edu 37 19 44891003 44891003 + Silent SNP G G A novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF285 26974 hgsc.bcm.edu 37 19 44891043 44891043 + Missense_Mutation SNP G G T rs77661661 unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF285 26974 hgsc.bcm.edu;ucsc.edu 37 19 44892225 44892225 + Missense_Mutation SNP T T G rs114985922 byfrequency TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF286A 57335 hgsc.bcm.edu;ucsc.edu 37 17 15620445 15620445 + Silent SNP C C T rs2530065 unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF286B 729288 broad.mit.edu 37 17 18575065 18575065 + Intron SNP C A A novel unknown TCGA-B8-5165-01A-01D-1421-08 TCGA-B8-5165-10A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF286B 729288 broad.mit.edu 37 17 18575547 18575547 + Intron SNP G T T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF286B 729288 broad.mit.edu;ucsc.edu 37 17 18584142 18584142 + Missense_Mutation SNP A G G rs2654297 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF286B 729288 hgsc.bcm.edu;ucsc.edu 37 17 18584142 18584142 + Missense_Mutation SNP A A G rs2654297 unknown TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF287 57336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 16456102 16456102 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF28 7576 broad.mit.edu 37 19 53321205 53321205 + Missense_Mutation SNP G C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF292 23036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87966445 87966445 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF292 23036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87969169 87969169 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF292 23036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87970890 87970890 + Nonsense_Mutation SNP C C T novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF292 23036 hgsc.bcm.edu 37 6 87966157 87966157 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF292 23036 hgsc.bcm.edu 37 6 87970404 87970404 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF292 23036 hgsc.bcm.edu 37 6 87970404 87970404 + Nonsense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF295 0 broad.mit.edu;hgsc.bcm.edu 37 21 43413025 43413025 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF295 0 hgsc.bcm.edu 37 21 43412175 43412175 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF295 0 hgsc.bcm.edu 37 21 43412479 43412479 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF295 0 hgsc.bcm.edu;ucsc.edu 37 21 43411090 43411098 + In_Frame_Del DEL ATGTGATTG ATGTGATTG - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 ATGTGATTG ATGTGATTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF300 91975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150276178 150276179 + Frame_Shift_Ins INS - - A novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF300 91975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150276423 150276423 + Silent SNP T T C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF300 91975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150276453 150276453 + Silent SNP T T C novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF300 91975 hgsc.bcm.edu 37 5 150276155 150276155 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF302 55900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35175869 35175869 + Silent SNP A A G novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF302 55900 hgsc.bcm.edu 37 19 35175650 35175650 + Silent SNP G G A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF304 57343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57865150 57865150 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF304 57343 hgsc.bcm.edu 37 19 57863052 57863052 + Missense_Mutation SNP T T C rs117111481 bycluster;byfrequency;by1000genomes TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF304 57343 hgsc.bcm.edu 37 19 57867886 57867886 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF304 57343 hgsc.bcm.edu;ucsc.edu 37 19 57863052 57863052 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF304 57343 hgsc.bcm.edu;ucsc.edu 37 19 57865095 57865095 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF30 90075 hgsc.bcm.edu 37 19 35435241 35435241 + Silent SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF30 90075 hgsc.bcm.edu;ucsc.edu 37 19 35434174 35434174 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4804-01A-02D-1373-10 TCGA-BP-4804-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF311 282890 broad.mit.edu;hgsc.bcm.edu 37 6 28967350 28967350 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF317 57693 broad.mit.edu 37 19 9268631 9268631 + Intron SNP A G G novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF318 24149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43304999 43304999 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF318 24149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43305844 43305844 + Silent SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF318 24149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43308012 43308012 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF318 24149 hgsc.bcm.edu;ucsc.edu 37 6 43307260 43307261 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF318 24149 hgsc.bcm.edu;ucsc.edu 37 6 43308576 43308576 + Silent SNP A A T novel unknown TCGA-B0-4714-01A-01D-1361-10 TCGA-B0-4714-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF319 57567 broad.mit.edu 37 16 58032227 58032227 + 5'UTR SNP G A A novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF320 162967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53384724 53384724 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF320 162967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53385021 53385021 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF320 162967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53385022 53385022 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4974-01A-01D-1462-08 TCGA-BP-4974-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF322A 0 broad.mit.edu 37 6 26638479 26638479 + Silent SNP A G G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF323 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28294515 28294515 + Silent SNP T T G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF323 0 hgsc.bcm.edu;ucsc.edu 37 6 28293947 28293947 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF324B 388569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58967919 58967919 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF326 284695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90475839 90475839 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF329 79673 hgsc.bcm.edu 37 19 58640668 58640668 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF329 79673 hgsc.bcm.edu;ucsc.edu 37 19 58639319 58639319 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF329 79673 hgsc.bcm.edu;ucsc.edu 37 19 58640489 58640489 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF329 79673 hgsc.bcm.edu;ucsc.edu 37 19 58650602 58650602 + Intron SNP A A T novel unknown TCGA-BP-4775-01A-01D-1366-10 TCGA-BP-4775-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF331 55422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54080261 54080261 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF333 84449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14829357 14829357 + Silent SNP C C T novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF333 84449 hgsc.bcm.edu 37 19 14829458 14829458 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF334 55713 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45140775 45140775 + 5'UTR SNP C C T novel unknown TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF334 55713 hgsc.bcm.edu 37 20 45134260 45134260 + Intron SNP A A G novel unknown TCGA-B0-4846-01A-01D-1361-10 TCGA-B0-4846-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF334 55713 hgsc.bcm.edu;ucsc.edu 37 20 45136263 45136263 + Intron SNP T T A novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF335 63925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44586316 44586316 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5984-01A-11D-1669-08 TCGA-CZ-5984-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF335 63925 hgsc.bcm.edu 37 20 44578213 44578213 + Splice_Region SNP G G T novel unknown TCGA-BP-4799-01A-01D-1373-10 TCGA-BP-4799-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF337 26152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 25656758 25656758 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF337 26152 hgsc.bcm.edu 37 20 25655968 25655968 + Silent SNP C C T novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF33A 7581 hgsc.bcm.edu 37 10 38343536 38343539 + Frame_Shift_Del DEL TATT TATT - novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 TATT TATT . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF33A 7581 hgsc.bcm.edu 37 10 38343868 38343868 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF33A 7581 hgsc.bcm.edu 37 10 38343924 38343924 + Frame_Shift_Del DEL C C - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF33A 7581 hgsc.bcm.edu;ucsc.edu 37 10 38343549 38343549 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF33B 7582 broad.mit.edu;hgsc.bcm.edu 37 10 43088522 43088522 + Nonsense_Mutation SNP G G A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF33B 7582 hgsc.bcm.edu 37 10 43088537 43088537 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF341 84905 broad.mit.edu 37 20 32378919 32378920 + Frame_Shift_Ins INS - C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF341 84905 broad.mit.edu;hgsc.bcm.edu 37 20 32379290 32379290 + Silent SNP C C T rs148919836 unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF341 84905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 32377331 32377331 + Missense_Mutation SNP A A C novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF343 79175 broad.mit.edu;hgsc.bcm.edu 37 20 2464152 2464152 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF343 79175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2464292 2464292 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF343 79175 hgsc.bcm.edu;ucsc.edu 37 20 2464883 2464883 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF345 25850 hgsc.bcm.edu 37 19 37368165 37368166 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF345 25850 hgsc.bcm.edu 37 19 37368169 37368169 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF346 23567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176471492 176471492 + Missense_Mutation SNP G G A rs139233067 unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF347 84671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53644453 53644453 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF347 84671 broad.mit.edu;ucsc.edu 37 19 53656986 53656986 + Missense_Mutation SNP C G G novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF347 84671 hgsc.bcm.edu;ucsc.edu 37 19 53645671 53645671 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF34 80778 hgsc.bcm.edu 37 8 145999619 145999619 + Missense_Mutation SNP T T C rs79597357 unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF350 59348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52469415 52469415 + Silent SNP C C G novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354A 6940 broad.mit.edu;hgsc.bcm.edu 37 5 178139045 178139045 + 3'UTR SNP C C A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354A 6940 hgsc.bcm.edu 37 5 178140409 178140424 + Frame_Shift_Del DEL CTTTCTATAGTGGGGA CTTTCTATAGTGGGGA - novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 CTTTCTATAGTGGGGA CTTTCTATAGTGGGGA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354A 6940 hgsc.bcm.edu;ucsc.edu 37 5 178139394 178139394 + Silent SNP T T C rs191516498 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354B 117608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178293302 178293302 + Silent SNP C C T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354B 117608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178309752 178309752 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354C 30832 broad.mit.edu 37 5 178507172 178507172 + 3'UTR SNP G A A novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF354C 30832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178506605 178506605 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF354C 30832 hgsc.bcm.edu 37 5 178506270 178506270 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4790-01A-01D-1373-10 TCGA-BP-4790-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF354C 30832 hgsc.bcm.edu;ucsc.edu 37 5 178504125 178504125 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF358 140467 broad.mit.edu;hgsc.bcm.edu 37 19 7584511 7584511 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF362 149076 broad.mit.edu 37 1 33736126 33736126 + 5'UTR SNP T G G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF362 149076 broad.mit.edu 37 1 33736126 33736126 + 5'UTR SNP T G G novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF365 22891 hgsc.bcm.edu;ucsc.edu 37 10 64159446 64159446 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF365 22891 hgsc.bcm.edu;ucsc.edu 37 10 64219493 64219493 + Splice_Region SNP C C G novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF3 7551 broad.mit.edu 37 7 99668418 99668418 + 3'UTR SNP G T T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF3 7551 broad.mit.edu 37 7 99668580 99668580 + 3'UTR SNP T C C novel unknown TCGA-CZ-4853-01A-01D-1429-08 TCGA-CZ-4853-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF3 7551 broad.mit.edu 37 7 99673093 99673093 + Intron SNP G T T novel unknown TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF3 7551 broad.mit.edu;hgsc.bcm.edu 37 7 99673136 99673136 + Intron SNP G G T novel unknown TCGA-B0-5812-01A-11D-1669-08 TCGA-B0-5812-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF3 7551 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99668973 99668973 + Silent SNP G G C novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF3 7551 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99669413 99669413 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF382 84911 broad.mit.edu 37 19 37118584 37118585 + 3'UTR DEL AC - - rs72058082 unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 AC AC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF382 84911 hgsc.bcm.edu;ucsc.edu 37 19 37118014 37118015 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-3924-01A-01D-1458-08 TCGA-B2-3924-10A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF383 163087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37733520 37733520 + Missense_Mutation SNP G G C novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF384 171017 broad.mit.edu 37 12 6776846 6776846 + 3'UTR SNP T A A rs142697690 by1000genomes TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF384 171017 broad.mit.edu;hgsc.bcm.edu 37 12 6776846 6776846 + 3'UTR SNP T T A rs142697690 by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF385A 25946 hgsc.bcm.edu;ucsc.edu 37 12 54764794 54764794 + Frame_Shift_Del DEL C C - novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF385B 151126 broad.mit.edu;hgsc.bcm.edu 37 2 180308134 180308134 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF385B 151126 hgsc.bcm.edu;ucsc.edu 37 2 180310276 180310276 + Splice_Site SNP C C T novel unknown TCGA-AK-3428-01A-02D-1361-10 TCGA-AK-3428-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF385B 151126 hgsc.bcm.edu;ucsc.edu 37 2 180383279 180383279 + Silent SNP G G A novel unknown TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF385D 79750 hgsc.bcm.edu 37 3 21706406 21706406 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF394 84124 broad.mit.edu 37 7 99091034 99091034 + 3'UTR SNP C A A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF395 55893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28206286 28206286 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5982-01A-11D-1669-08 TCGA-CZ-5982-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF395 55893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28206650 28206650 + Silent SNP A A G novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF395 55893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28209116 28209116 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4913-01A-01D-1429-08 TCGA-CJ-4913-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF395 55893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28214212 28214212 + Silent SNP A A G novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF396 252884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32948335 32948335 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF397 84307 hgsc.bcm.edu 37 18 32822821 32822821 + Silent SNP G G A novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF398 57541 broad.mit.edu 37 7 148876816 148876816 + Missense_Mutation SNP T A A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF398 57541 broad.mit.edu 37 7 148877021 148877021 + 3'UTR SNP T C C novel unknown TCGA-BP-5187-01A-01D-1429-08 TCGA-BP-5187-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF398 57541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148875840 148875840 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF404 342908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44376785 44376785 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 broad.mit.edu 37 18 72516044 72516044 + Intron SNP G A A novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72345031 72345031 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72346178 72346178 + Missense_Mutation SNP A A C novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72346181 72346181 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72346444 72346444 + Missense_Mutation SNP A A C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72346684 72346684 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72346773 72346773 + Silent SNP T T C novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF407 55628 hgsc.bcm.edu;ucsc.edu 37 18 72345311 72345311 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF408 79797 hgsc.bcm.edu;ucsc.edu 37 11 46726914 46726914 + Frame_Shift_Del DEL T T - novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF415 55786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53612726 53612726 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF415 55786 hgsc.bcm.edu 37 19 53611977 53611977 + Nonsense_Mutation SNP T T A novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF417 147687 broad.mit.edu 37 19 58419716 58419716 + 3'UTR SNP G C C novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF417 147687 hgsc.bcm.edu 37 19 58421128 58421128 + Missense_Mutation SNP C C T rs3826671 bycluster TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF418 147686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58439174 58439174 + Silent SNP A A T novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF419 79744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58005254 58005254 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF423 23090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49557609 49557609 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF423 23090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49670001 49670001 + Missense_Mutation SNP C C T novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF423 23090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49670777 49670777 + Silent SNP C C T novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF423 23090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49670844 49670844 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF423 23090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49672052 49672052 + Silent SNP A A T novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF423 23090 hgsc.bcm.edu 37 16 49670845 49670845 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF423 23090 hgsc.bcm.edu;ucsc.edu 37 16 49670635 49670635 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF425 155054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148801994 148801994 + Silent SNP C C G novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF425 155054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148802500 148802500 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF426 79088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9643586 9643586 + Missense_Mutation SNP T T G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF428 126299 broad.mit.edu 37 19 44112165 44112165 + Missense_Mutation SNP G T T rs151333697 unknown;alternate_allele TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF429 353088 broad.mit.edu;hgsc.bcm.edu 37 19 21720845 21720845 + Missense_Mutation SNP A A T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF429 353088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21719682 21719682 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF430 80264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21203558 21203558 + 5'UTR SNP T T G novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF430 80264 hgsc.bcm.edu 37 19 21216891 21216891 + Splice_Site SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF432 9668 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52538204 52538204 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF432 9668 hgsc.bcm.edu;ucsc.edu 37 19 52548387 52548387 + Intron SNP C C A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF432 9668 hgsc.bcm.edu;ucsc.edu 37 19 52552975 52552975 + upstream SNP A A T novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF433 163059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12125862 12125862 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF433 163059 hgsc.bcm.edu 37 19 12126886 12126886 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF434 0 broad.mit.edu;ucsc.edu 37 16 3432991 3432991 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF43 7594 broad.mit.edu 37 19 21992038 21992038 + Silent SNP A G G novel unknown TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF43 7594 hgsc.bcm.edu 37 19 21992281 21992281 + Silent SNP A A C novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF43 7594 hgsc.bcm.edu;ucsc.edu 37 19 21992281 21992281 + Silent SNP A A C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF438 220929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31134199 31134199 + Silent SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF438 220929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31134379 31134379 + Silent SNP T T C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF438 220929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31138528 31138528 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4989-01A-01D-1462-08 TCGA-BP-4989-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF438 220929 hgsc.bcm.edu;ucsc.edu 37 10 31137593 31137593 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF439 90594 broad.mit.edu 37 19 11959618 11959618 + 5'UTR SNP C A A novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF439 90594 broad.mit.edu;hgsc.bcm.edu 37 19 11979300 11979300 + Silent SNP G G T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF441 126068 hgsc.bcm.edu;ucsc.edu 37 19 11892094 11892094 + Silent SNP T T C novel unknown TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF442 79973 hgsc.bcm.edu 37 19 12460568 12460568 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF44 51710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12383395 12383395 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF445 353274 broad.mit.edu 37 3 44541259 44541259 + Intron SNP C T T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF445 353274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44488853 44488853 + Silent SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF445 353274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44489465 44489465 + Missense_Mutation SNP C C A novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF449 203523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 134483227 134483227 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF449 203523 hgsc.bcm.edu 37 X 134481213 134481213 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF451 26036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 57013144 57013144 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF451 26036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 57013213 57013213 + Missense_Mutation SNP A A C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF454 285676 broad.mit.edu 37 5 178369697 178369697 + 5'UTR SNP A G G novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF454 285676 hgsc.bcm.edu;ucsc.edu 37 5 178373911 178373911 + Silent SNP C C G novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF45 7596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44418082 44418082 + Silent SNP G G A rs142171881 bycluster;byfrequency;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF462 58499 broad.mit.edu 37 9 109689490 109689490 + Silent SNP A C C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF462 58499 broad.mit.edu 37 9 109694675 109694675 + Intron SNP G A A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF462 58499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 109689533 109689533 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF462 58499 hgsc.bcm.edu 37 9 109687894 109687894 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4886-01A-01D-1373-10 TCGA-CJ-4886-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF462 58499 hgsc.bcm.edu 37 9 109688141 109688141 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3460-01A-02D-1361-10 TCGA-AK-3460-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF462 58499 hgsc.bcm.edu 37 9 109688141 109688141 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF467 168544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 149468119 149468119 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF467 168544 hgsc.bcm.edu 37 7 149462196 149462196 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF468 90333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53345371 53345371 + Missense_Mutation SNP G G A rs148965254 bycluster;byfrequency;by1000genomes TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF468 90333 hgsc.bcm.edu 37 19 53345095 53345095 + Missense_Mutation SNP G G A rs61729939 bycluster;byfrequency;by1000genomes TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF468 90333 hgsc.bcm.edu;ucsc.edu 37 19 53345095 53345095 + Missense_Mutation SNP G G A rs61729939 bycluster;byfrequency;by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF469 84627 broad.mit.edu 37 16 88494070 88494070 + Frame_Shift_Del DEL G - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF469 84627 broad.mit.edu 37 16 88498001 88498001 + Missense_Mutation SNP C G G novel unknown TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF469 84627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88498466 88498466 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF473 25888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50549932 50549932 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF473 25888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50550275 50550275 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF473 25888 hgsc.bcm.edu;ucsc.edu 37 19 50550173 50550173 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF474 133923 hgsc.bcm.edu 37 5 121488450 121488461 + In_Frame_Del DEL TGTGGAGCTCCA TGTGGAGCTCCA - novel unknown TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 TGTGGAGCTCCA TGTGGAGCTCCA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF479 90827 broad.mit.edu 37 7 57188569 57188569 + Missense_Mutation SNP A T T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF480 147657 broad.mit.edu;hgsc.bcm.edu 37 19 52825621 52825621 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF480 147657 hgsc.bcm.edu 37 19 52803670 52803671 + Frame_Shift_Del DEL TG TG - rs3217319 bycluster;by1000genomes TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF48 197407 broad.mit.edu 37 16 30409890 30409890 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF48 197407 hgsc.bcm.edu;ucsc.edu 37 16 30408855 30408855 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF483 158399 hgsc.bcm.edu;ucsc.edu 37 9 114304001 114304001 + Silent SNP A A G novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF483 158399 hgsc.bcm.edu;ucsc.edu 37 9 114305026 114305026 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF483 158399 hgsc.bcm.edu;ucsc.edu 37 9 114305082 114305082 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF485 220992 broad.mit.edu 37 10 44112888 44112888 + 3'UTR SNP T C C novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF485 220992 hgsc.bcm.edu;ucsc.edu 37 10 44111891 44111891 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF488 118738 broad.mit.edu 37 10 48373058 48373059 + 3'UTR DEL CA - - novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF488 118738 hgsc.bcm.edu;ucsc.edu 37 10 48371284 48371284 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF491 126069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11917136 11917136 + Missense_Mutation SNP T T A novel unknown TCGA-B8-5158-01A-01D-1421-08 TCGA-B8-5158-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF492 57615 broad.mit.edu 37 19 22847963 22847963 + Missense_Mutation SNP A T T novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF492 57615 broad.mit.edu;hgsc.bcm.edu 37 19 22836216 22836216 + Nonsense_Mutation SNP C C A novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF492 57615 hgsc.bcm.edu 37 19 22836805 22836805 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF493 284443 broad.mit.edu 37 19 21607481 21607482 + Frame_Shift_Del DEL AA - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF493 284443 broad.mit.edu 37 19 21608374 21608374 + 3'UTR SNP C T T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF493 284443 broad.mit.edu 37 19 21608478 21608478 + 3'UTR SNP G A A novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF493 284443 broad.mit.edu;hgsc.bcm.edu 37 19 21607620 21607620 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF493 284443 hgsc.bcm.edu 37 19 21606276 21606277 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF496 84838 broad.mit.edu 37 1 247463763 247463763 + 3'UTR SNP C A A novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF496 84838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247463962 247463962 + Silent SNP G G C novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF496 84838 broad.mit.edu;ucsc.edu 37 1 247463877 247463877 + Missense_Mutation SNP G C C novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF500 26048 hgsc.bcm.edu 37 16 4812665 4812665 + Silent SNP G G A novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF507 22847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 32843992 32843992 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF507 22847 hgsc.bcm.edu 37 19 32844300 32844300 + Silent SNP C C A novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF510 22869 broad.mit.edu;ucsc.edu 37 9 99538291 99538291 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF512B 57473 broad.mit.edu 37 20 62595905 62595905 + Missense_Mutation SNP T C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF512B 57473 broad.mit.edu;hgsc.bcm.edu 37 20 62596015 62596015 + Silent SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF512B 57473 broad.mit.edu;ucsc.edu 37 20 62599261 62599261 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF513 130557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27601531 27601531 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF516 9658 broad.mit.edu 37 18 74154244 74154244 + Missense_Mutation SNP G T T novel unknown TCGA-AS-3778-01A-01D-0966-08 TCGA-AS-3778-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF516 9658 broad.mit.edu 37 18 74154244 74154244 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5096-01A-01D-1421-08 TCGA-B0-5096-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF518A 9849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97920188 97920188 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5077-01A-01D-1462-08 TCGA-B0-5077-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF518A 9849 hgsc.bcm.edu;ucsc.edu 37 10 97917981 97917981 + Missense_Mutation SNP A A C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF518B 85460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 10447285 10447285 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF518B 85460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 10447375 10447375 + Missense_Mutation SNP T T C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 broad.mit.edu 37 18 14104777 14104777 + 3'UTR SNP A C C novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF519 162655 hgsc.bcm.edu 37 18 14105166 14105249 + In_Frame_Del DEL TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT - novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105186 14105186 + Silent SNP T T C rs145376132 bycluster;byfrequency;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105236 14105236 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105246 14105246 + Silent SNP G G A rs149803578 byfrequency TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105246 14105246 + Silent SNP G G A rs149803578 byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105247 14105247 + Missense_Mutation SNP T T G rs145735313 byfrequency TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105248 14105248 + Missense_Mutation SNP G G A rs148982947 byfrequency TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105248 14105248 + Missense_Mutation SNP G G A rs148982947 byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF519 162655 hgsc.bcm.edu 37 18 14105249 14105249 + Silent SNP T T C rs144389001 byfrequency TCGA-B8-5550-01A-01D-1534-10 TCGA-B8-5550-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF521 25925 broad.mit.edu 37 18 22642387 22642387 + 3'UTR DEL T - - novel unknown TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF521 25925 broad.mit.edu 37 18 22642387 22642387 + 3'UTR DEL T - - novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF521 25925 broad.mit.edu 37 18 22642387 22642387 + 3'UTR DEL T - - novel unknown TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF521 25925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 22804557 22804557 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4995-01A-01D-1462-08 TCGA-BP-4995-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF521 25925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 22806642 22806642 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF521 25925 hgsc.bcm.edu 37 18 22806401 22806401 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF521 25925 hgsc.bcm.edu;ucsc.edu 37 18 22804358 22804358 + Missense_Mutation SNP G G A rs190029761 by1000genomes;alternate_allele TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF525 170958 broad.mit.edu 37 19 53886286 53886286 + 3'UTR SNP T C C rs4324256 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF525 170958 broad.mit.edu 37 19 53886962 53886962 + 3'UTR SNP G A A novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF525 170958 broad.mit.edu 37 19 53889703 53889703 + 3'UTR SNP T A A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF525 170958 broad.mit.edu 37 19 53889727 53889727 + 3'UTR SNP A G G novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF527 84503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37879644 37879644 + Silent SNP G G A rs73930983 bycluster TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF527 84503 hgsc.bcm.edu 37 19 37865057 37865057 + Intron SNP C C T novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF528 84436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52918551 52918551 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-6032-01A-11D-1669-08 TCGA-CJ-6032-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF528 84436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52918813 52918813 + Silent SNP T T C novel unknown TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF528 84436 hgsc.bcm.edu;ucsc.edu 37 19 52918713 52918715 + In_Frame_Del DEL ACC ACC - novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 ACC ACC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF528 84436 hgsc.bcm.edu;ucsc.edu 37 19 52918827 52918827 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5108-01A-01D-1421-08 TCGA-B0-5108-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF529 57711 broad.mit.edu 37 19 37037308 37037309 + 3'UTR INS - AAG AAG novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF530 348327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58118103 58118103 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF530 348327 hgsc.bcm.edu 37 19 58118342 58118342 + Silent SNP A A T novel unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF532 55205 broad.mit.edu 37 18 56601783 56601783 + Missense_Mutation SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF532 55205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56587466 56587466 + Silent SNP T T C novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF532 55205 hgsc.bcm.edu;ucsc.edu 37 18 56585627 56585627 + Silent SNP C C T novel unknown TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF534 147658 broad.mit.edu 37 19 52942411 52942411 + Silent SNP G A A rs113700997 bycluster;byfrequency TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF534 147658 broad.mit.edu 37 19 52942411 52942411 + Silent SNP G A A rs113700997 bycluster;byfrequency TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF534 147658 broad.mit.edu 37 19 52942411 52942411 + Silent SNP G A A rs113700997 bycluster;byfrequency TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF534 147658 broad.mit.edu 37 19 52942411 52942411 + Silent SNP G A A rs113700997 bycluster;byfrequency TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF534 147658 broad.mit.edu 37 19 52942423 52942423 + Missense_Mutation SNP T A A rs112113280 bycluster;byfrequency TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF534 147658 hgsc.bcm.edu 37 19 52934778 52934778 + Intron SNP G G C rs73588013 bycluster;byfrequency;by1000genomes TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF536 9745 broad.mit.edu 37 19 30935867 30935867 + Frame_Shift_Del DEL G - - novel unknown TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF536 9745 broad.mit.edu 37 19 30936491 30936491 + Silent SNP G A A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF540 163255 broad.mit.edu 37 19 38077905 38077905 + Intron DEL C - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF540 163255 broad.mit.edu 37 19 38104307 38104308 + 3'UTR DEL AA - - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF540 163255 hgsc.bcm.edu;ucsc.edu 37 19 38103228 38103228 + Silent SNP T T C novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF543 125919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57838032 57838032 + Nonsense_Mutation SNP C C G novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF543 125919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57839655 57839655 + Silent SNP G G A novel unknown TCGA-A3-3378-01A-01D-0966-08 TCGA-A3-3378-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF543 125919 hgsc.bcm.edu 37 19 57839069 57839069 + Intron SNP C C T novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF544 27300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58772269 58772269 + Silent SNP T T C novel unknown TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF544 27300 hgsc.bcm.edu 37 19 58772926 58772926 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF546 339327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40519782 40519782 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF546 339327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40520538 40520538 + Missense_Mutation SNP C C T novel unknown TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF546 339327 hgsc.bcm.edu;ucsc.edu 37 19 40519822 40519824 + In_Frame_Del DEL ATC ATC - novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 ATC ATC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF547 284306 broad.mit.edu 37 19 57876543 57876543 + Intron SNP T G G novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF547 284306 hgsc.bcm.edu 37 19 57879976 57879976 + Intron SNP T T A novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF547 284306 hgsc.bcm.edu;ucsc.edu 37 19 57889395 57889395 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF548 147694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57910589 57910590 + Frame_Shift_Ins INS - - T novel unknown TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF549 256051 broad.mit.edu 37 19 58066091 58066091 + 3'UTR DEL C - - novel unknown TCGA-B2-5633-01A-01D-1534-10 TCGA-B2-5633-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF550 162972 hgsc.bcm.edu;ucsc.edu 37 19 58067635 58067635 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF551 90233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58198816 58198816 + Silent SNP T T C novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF551(dist=4066) 0 hgsc.bcm.edu;ucsc.edu 37 19 58205235 58205235 + IGR SNP A A T novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF554 115196 hgsc.bcm.edu;ucsc.edu 37 19 2833757 2833757 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF555 148254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2853267 2853267 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF555 148254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2853429 2853429 + Missense_Mutation SNP C C A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF556 80032 broad.mit.edu 37 19 2878501 2878502 + 3'UTR INS - A A novel unknown TCGA-A3-3365-01A-01D-0966-08 TCGA-A3-3365-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF556 80032 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2877284 2877284 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF557 79230 broad.mit.edu;hgsc.bcm.edu 37 19 7075062 7075062 + 5'UTR SNP C C T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF559 84527 broad.mit.edu 37 19 9452027 9452028 + Intron DEL CT - - rs140135479 bycluster;by1000genomes TCGA-AK-3444-01A-01D-0966-08 TCGA-AK-3444-10A-01D-0966-08 CT CT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF560 147741 broad.mit.edu;hgsc.bcm.edu 37 19 9577235 9577235 + 3'UTR SNP C C G novel unknown TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF560 147741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9578075 9578075 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF560 147741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9578114 9578114 + Silent SNP A A C novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF561 93134 broad.mit.edu;hgsc.bcm.edu 37 19 9720930 9720930 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5116-01A-02D-1421-08 TCGA-B0-5116-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF561 93134 broad.mit.edu;hgsc.bcm.edu 37 19 9724746 9724746 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF564 163050 hgsc.bcm.edu 37 19 12637738 12637739 + Frame_Shift_Ins INS - - AA novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF564 163050 hgsc.bcm.edu;ucsc.edu 37 19 12637642 12637643 + Frame_Shift_Ins INS - - CA novel unknown TCGA-BP-5009-01A-01D-1462-08 TCGA-BP-5009-11A-01D-1462-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF566 84924 hgsc.bcm.edu;ucsc.edu 37 19 36940081 36940081 + Nonsense_Mutation SNP G G T novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF568 374900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37428114 37428114 + Missense_Mutation SNP G G A novel unknown TCGA-BP-5183-01A-01D-1429-08 TCGA-BP-5183-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF569 148266 broad.mit.edu 37 19 37903316 37903317 + 3'UTR INS - T T rs3840940 bycluster;by1000genomes TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF569 148266 hgsc.bcm.edu 37 19 37904476 37904476 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4342-01A-01D-1366-10 TCGA-BP-4342-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF569 148266 hgsc.bcm.edu 37 19 37905300 37905300 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF570 148268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37967302 37967302 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF570 148268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37975663 37975663 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF570 148268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37975687 37975687 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF57 126295 broad.mit.edu;hgsc.bcm.edu 37 19 2917940 2917940 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF57 126295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2917051 2917051 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF572 137209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125989480 125989480 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF572 137209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125989952 125989952 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF572 137209 hgsc.bcm.edu 37 8 125987897 125987897 + Silent SNP A A G novel unknown TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF572 137209 hgsc.bcm.edu;ucsc.edu 37 8 125990031 125990031 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF573 126231 hgsc.bcm.edu;ucsc.edu 37 19 38229952 38229952 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF574 64763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42582777 42582777 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF574 64763 hgsc.bcm.edu 37 19 42584326 42584326 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF574 64763 hgsc.bcm.edu 37 19 42584386 42584386 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF577 84765 broad.mit.edu 37 19 52375740 52375740 + 3'UTR SNP A G G novel unknown TCGA-B0-5702-01A-11D-1534-10 TCGA-B0-5702-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF577 84765 broad.mit.edu 37 19 52375740 52375740 + 3'UTR SNP A G G novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF577 84765 hgsc.bcm.edu;ucsc.edu 37 19 52376920 52376920 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF578 147660 hgsc.bcm.edu 37 19 53014787 53014787 + Missense_Mutation SNP A A G rs35356792 bycluster;byfrequency;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF579 163033 broad.mit.edu 37 19 56089233 56089233 + 3'UTR SNP G T T novel unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF580 51157 broad.mit.edu;hgsc.bcm.edu 37 19 56153817 56153817 + 5'UTR SNP A A T novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF583 147949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56934784 56934784 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF584 201514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58921394 58921394 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF584 201514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58928399 58928399 + Missense_Mutation SNP T T G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF585A 199704 broad.mit.edu 37 19 37641929 37641929 + 3'UTR DEL T - - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF585A 199704 broad.mit.edu 37 19 37641929 37641929 + 3'UTR DEL T - - novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF585B 92285 broad.mit.edu 37 19 37676023 37676023 + 3'UTR SNP A C C rs1610560 bycluster;bysubmitter;by2hit2allele TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF587 84914 broad.mit.edu 37 19 58352661 58352661 + Intron SNP T A A rs148810844 by1000genomes TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF587 84914 hgsc.bcm.edu 37 19 58370298 58370298 + Missense_Mutation SNP G G A rs3826671 bycluster TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF587 84914 hgsc.bcm.edu;ucsc.edu 37 19 58370766 58370766 + Missense_Mutation SNP G G A rs77577775 bycluster;byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF589 51385 hgsc.bcm.edu 37 3 48309402 48309402 + Intron SNP C C A novel unknown TCGA-DV-5574-01A-01D-1534-10 TCGA-DV-5574-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF589 51385 hgsc.bcm.edu 37 3 48310107 48310107 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF592 9640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85326331 85326331 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF592 9640 hgsc.bcm.edu 37 15 85327156 85327156 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF592 9640 hgsc.bcm.edu;ucsc.edu 37 15 85326473 85326477 + Frame_Shift_Del DEL TCCGG TCCGG - novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 TCCGG TCCGG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF594 84622 broad.mit.edu;hgsc.bcm.edu 37 17 5086351 5086351 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF594 84622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5086703 5086703 + Silent SNP G G T novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF594 84622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5086795 5086795 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF594 84622 hgsc.bcm.edu 37 17 5085789 5085790 + Frame_Shift_Ins INS - - CC novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF595 152687 broad.mit.edu 37 4 53233 53233 + 5'UTR SNP C A A rs7658521 bycluster;by2hit2allele TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF595 152687 broad.mit.edu 37 4 67784 67784 + Intron DEL T - - rs113282456 unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF595 152687 broad.mit.edu 37 4 67784 67785 + Intron DEL TT - - rs113282456 unknown;alternate_allele TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF595 152687 broad.mit.edu;hgsc.bcm.edu 37 4 86237 86237 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF595 152687 hgsc.bcm.edu 37 4 53355 53355 + 5'UTR SNP A A G novel unknown TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF595 152687 hgsc.bcm.edu 37 4 85995 85996 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF595 152687 hgsc.bcm.edu 37 4 85995 85996 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF595 152687 hgsc.bcm.edu 37 4 85995 85996 + Frame_Shift_Ins INS - - A novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF596 169270 hgsc.bcm.edu;ucsc.edu 37 8 195379 195380 + Frame_Shift_Ins INS - - A novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF596 169270 hgsc.bcm.edu;ucsc.edu 37 8 195934 195934 + Missense_Mutation SNP C C T rs188238096 by1000genomes TCGA-AK-3454-01A-02D-1361-10 TCGA-AK-3454-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF597 146434 hgsc.bcm.edu;ucsc.edu 37 16 3486668 3486668 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF598 90850 hgsc.bcm.edu 37 16 2047176 2047176 + 3'Promoter SNP C C G novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF598 90850 hgsc.bcm.edu 37 16 2050421 2050421 + Silent SNP T T C novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF598 90850 hgsc.bcm.edu 37 16 2052325 2052325 + Silent SNP C C T novel unknown TCGA-BP-4768-01A-01D-1366-10 TCGA-BP-4768-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF600 162966 broad.mit.edu;hgsc.bcm.edu 37 19 53269213 53269213 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF600 162966 broad.mit.edu;hgsc.bcm.edu 37 19 53269746 53269746 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF600 162966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53269727 53269727 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF600 162966 hgsc.bcm.edu;ucsc.edu 37 19 53270877 53270877 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF606 80095 broad.mit.edu;hgsc.bcm.edu 37 19 58512737 58512737 + Splice_Site SNP A A C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF606 80095 hgsc.bcm.edu;ucsc.edu 37 19 58490014 58490014 + Missense_Mutation SNP T T A novel unknown TCGA-DV-5566-01A-01D-1534-10 TCGA-DV-5566-10A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF606 80095 hgsc.bcm.edu;ucsc.edu 37 19 58490239 58490239 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF607 84775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38190296 38190296 + Missense_Mutation SNP T T A novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF607 84775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38190552 38190552 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF607 84775 hgsc.bcm.edu;ucsc.edu 37 19 38189521 38189521 + Frame_Shift_Del DEL G G - novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF608 57507 broad.mit.edu 37 5 123973399 123973400 + 3'UTR DEL TA - - rs67644674 unknown TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF608 57507 broad.mit.edu 37 5 124079966 124079966 + Silent SNP C G G novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF608 57507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 123982880 123982880 + Missense_Mutation SNP A A G novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF608 57507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 123983986 123983986 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF608 57507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 124079840 124079840 + Silent SNP C C T novel unknown TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF608 57507 hgsc.bcm.edu 37 5 124080148 124080148 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4892-01A-01D-1373-10 TCGA-CJ-4892-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF608 57507 hgsc.bcm.edu;ucsc.edu 37 5 123984358 123984358 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF609 23060 broad.mit.edu;ucsc.edu 37 15 64967175 64967175 + Missense_Mutation SNP C G G novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF609 23060 hgsc.bcm.edu 37 15 64968215 64968215 + Silent SNP C C A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF609 23060 hgsc.bcm.edu;ucsc.edu 37 15 64967099 64967099 + Silent SNP C C A novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF609 23060 hgsc.bcm.edu;ucsc.edu 37 15 64967277 64967280 + Frame_Shift_Del DEL GAAA GAAA - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GAAA GAAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF610 162963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52857566 52857566 + Silent SNP C C T novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF610 162963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52869427 52869427 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF610 162963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52869689 52869689 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF611 81856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53209367 53209367 + Missense_Mutation SNP C C A rs144132013 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF611 81856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53209500 53209500 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF613 79898 hgsc.bcm.edu 37 19 52448101 52448101 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF615 284370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52496685 52496685 + Silent SNP G G A novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF615 284370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52497620 52497620 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-5985-01A-11D-1669-08 TCGA-CZ-5985-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF616 90317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52618234 52618234 + Missense_Mutation SNP C C T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF616 90317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52618981 52618981 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF616 90317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52619876 52619876 + Silent SNP T T G novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF618 114991 broad.mit.edu 37 9 116779118 116779118 + Intron SNP G C C novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF618 114991 broad.mit.edu 37 9 116812597 116812598 + 3'UTR DEL TG - - novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF618 114991 broad.mit.edu 37 9 116813347 116813348 + 3'UTR INS - T T novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF618 114991 hgsc.bcm.edu 37 9 116770786 116770786 + Missense_Mutation SNP G G A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF618 114991 hgsc.bcm.edu 37 9 116810945 116810945 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF619 285267 hgsc.bcm.edu 37 3 40528385 40528385 + Silent SNP A A T novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF619 285267 hgsc.bcm.edu;ucsc.edu 37 3 40529519 40529519 + Silent SNP C C G novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF621 285268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 40574134 40574134 + Nonsense_Mutation SNP T T A novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF621 285268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 40574189 40574189 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF622 90441 hgsc.bcm.edu;ucsc.edu 37 5 16465400 16465400 + Missense_Mutation SNP C C G rs113566156 bycluster;byfrequency;by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF623 9831 broad.mit.edu 37 8 144733782 144733782 + 3'UTR SNP A C C novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF623 9831 broad.mit.edu 37 8 144733782 144733782 + 3'UTR SNP A C C novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF623 9831 broad.mit.edu;hgsc.bcm.edu 37 8 144733697 144733697 + 3'UTR SNP G G T novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF623 9831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144732657 144732657 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF623 9831 hgsc.bcm.edu;ucsc.edu 37 8 144732667 144732667 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF624 57547 hgsc.bcm.edu;ucsc.edu 37 17 16525940 16525940 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF624 57547 hgsc.bcm.edu;ucsc.edu 37 17 16527328 16527328 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF624 57547 hgsc.bcm.edu;ucsc.edu 37 17 16527779 16527779 + Missense_Mutation SNP C C G rs142158380 bycluster;byfrequency;by1000genomes TCGA-CW-6087-01A-11D-1669-08 TCGA-CW-6087-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF625 90589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12256409 12256409 + Silent SNP C C T rs188764180 by1000genomes TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF625 90589 hgsc.bcm.edu 37 19 12256227 12256228 + Frame_Shift_Del DEL TG TG - novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 TG TG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF626 199777 broad.mit.edu 37 19 20806607 20806607 + 3'UTR DEL A - - rs138949164 unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF626 199777 broad.mit.edu 37 19 20806648 20806649 + 3'UTR DEL CA - - rs150049173 bycluster;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF626 199777 broad.mit.edu 37 19 20806648 20806649 + 3'UTR DEL CA - - rs150049173 bycluster;by1000genomes TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF626 199777 broad.mit.edu 37 19 20806648 20806649 + 3'UTR DEL CA - - rs150049173 bycluster;by1000genomes TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF626 199777 broad.mit.edu 37 19 20806648 20806649 + 3'UTR DEL CA - - rs150049173 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF626 199777 broad.mit.edu 37 19 20806648 20806649 + 3'UTR DEL CA - - rs150049173 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CA CA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF626 199777 hgsc.bcm.edu 37 19 20807177 20807178 + Frame_Shift_Ins INS - - A rs35575803 unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF626 199777 hgsc.bcm.edu 37 19 20807177 20807178 + Frame_Shift_Ins INS - - A rs35575803 unknown TCGA-CJ-6028-01A-11D-1669-08 TCGA-CJ-6028-11A-01D-1669-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF627 199692 broad.mit.edu 37 19 11728757 11728757 + 3'UTR SNP G C C novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF627 199692 broad.mit.edu 37 19 11728758 11728758 + 3'UTR SNP C A A novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF627 199692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11725352 11725352 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4905-01A-02D-1429-08 TCGA-CJ-4905-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF628 89887 broad.mit.edu 37 19 55994427 55994427 + Missense_Mutation SNP A C C novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF629 23361 hgsc.bcm.edu;ucsc.edu 37 16 30794783 30794783 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF638 27332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71658543 71658543 + Missense_Mutation SNP T T C novel unknown TCGA-B8-5159-01A-01D-1421-08 TCGA-B8-5159-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF639 51193 broad.mit.edu 37 3 179052260 179052260 + 3'UTR DEL T - - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF641 121274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48737147 48737147 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF641 121274 hgsc.bcm.edu;ucsc.edu 37 12 48737149 48737149 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF641 121274 hgsc.bcm.edu;ucsc.edu 37 12 48739161 48739161 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF641 121274 hgsc.bcm.edu;ucsc.edu 37 12 48739179 48739179 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF642 0 hgsc.bcm.edu 37 1 40945114 40945114 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF642 0 hgsc.bcm.edu;ucsc.edu 37 1 40954792 40954792 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF643 0 broad.mit.edu 37 1 40922615 40922616 + Splice_Site DEL AG - - novel unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AG AG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF644 84146 hgsc.bcm.edu;ucsc.edu 37 1 91404914 91404914 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4761-01A-01D-1366-10 TCGA-BP-4761-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF644 84146 hgsc.bcm.edu;ucsc.edu 37 1 91405509 91405509 + Missense_Mutation SNP T T C rs146329330 unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF644 84146 hgsc.bcm.edu;ucsc.edu 37 1 91405536 91405536 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF646 9726 broad.mit.edu;hgsc.bcm.edu 37 16 31089296 31089296 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF646 9726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31087733 31087733 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF646 9726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31089750 31089751 + Frame_Shift_Ins INS - - T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF646 9726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31090216 31090216 + Missense_Mutation SNP T T A novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF646 9726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31094339 31094339 + Missense_Mutation SNP C C G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF646 9726 hgsc.bcm.edu 37 16 31089315 31089315 + Missense_Mutation SNP A A C novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF649 65251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52394722 52394722 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF652 22834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 47388778 47388778 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF653 115950 broad.mit.edu;hgsc.bcm.edu 37 19 11597661 11597661 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF653 115950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11596575 11596575 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF653 115950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11598181 11598181 + Missense_Mutation SNP G G A novel unknown TCGA-CW-5583-01A-02D-1534-10 TCGA-CW-5583-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF653 115950 hgsc.bcm.edu 37 19 11609091 11609091 + Intron SNP C C G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF654 55279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 88189697 88189697 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3322-01A-01D-0966-08 TCGA-A3-3322-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF655 79027 broad.mit.edu;hgsc.bcm.edu 37 7 99169358 99169358 + Missense_Mutation SNP C C A novel unknown TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF655 79027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99170286 99170286 + Silent SNP G G A novel unknown TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF655 79027 hgsc.bcm.edu 37 7 99170266 99170266 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF658 26149 broad.mit.edu 37 9 40772272 40772272 + Frame_Shift_Del DEL T - - novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF658 26149 broad.mit.edu 37 9 40772750 40772750 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF665 79788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53668352 53668352 + Missense_Mutation SNP C C T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF665 79788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53668435 53668435 + Silent SNP G G T novel unknown TCGA-BP-4985-01A-01D-1462-08 TCGA-BP-4985-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF667 63934 hgsc.bcm.edu;ucsc.edu 37 19 56953747 56953747 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4176-01A-02D-1366-10 TCGA-BP-4176-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF667 63934 hgsc.bcm.edu;ucsc.edu 37 19 56973770 56973770 + 5'UTR SNP G G A novel unknown TCGA-BP-4763-01A-01D-1366-10 TCGA-BP-4763-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF668 79759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31073518 31073518 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZNF669 79862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247265092 247265092 + Silent SNP T T C novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF669 79862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247265093 247265093 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF670 93474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247202840 247202840 + Splice_Site SNP C C T novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF670 93474 hgsc.bcm.edu 37 1 247202092 247202092 + Intron SNP C C T novel unknown TCGA-BP-4338-01A-01D-1806-10 TCGA-BP-4338-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF672 79894 broad.mit.edu;hgsc.bcm.edu 37 1 249142695 249142695 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF673 0 broad.mit.edu 37 X 46333091 46333092 + 3'UTR DEL TT - - rs150712140 unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 TT TT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF673 0 hgsc.bcm.edu;ucsc.edu 37 X 46332256 46332256 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF676 163223 broad.mit.edu 37 19 22362316 22362316 + 3'UTR DEL C - - novel unknown TCGA-A3-3349-01A-01D-1251-10 TCGA-A3-3349-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF676 163223 broad.mit.edu 37 19 22362673 22362673 + 3'UTR SNP G T T novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF676 163223 hgsc.bcm.edu 37 19 22363631 22363631 + Silent SNP G G A rs75683199 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF676 163223 hgsc.bcm.edu 37 19 22363634 22363634 + Missense_Mutation SNP C C A rs76456473 bycluster;byfrequency TCGA-DV-5576-01A-01D-1534-10 TCGA-DV-5576-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF677 342926 broad.mit.edu;hgsc.bcm.edu 37 19 53740523 53740523 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF677 342926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53740381 53740381 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5168-01A-01D-1421-08 TCGA-BP-5168-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF677 342926 hgsc.bcm.edu;ucsc.edu 37 19 53740495 53740495 + Silent SNP G G A novel unknown TCGA-CJ-5680-01A-11D-1534-10 TCGA-CJ-5680-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF678 339500 broad.mit.edu 37 1 227751268 227751268 + 5'UTR SNP G T T novel unknown TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF678 339500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227842449 227842449 + Silent SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF679 168417 broad.mit.edu;ucsc.edu 37 7 63726378 63726378 + Missense_Mutation SNP T A A novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF680 340252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 63981785 63981785 + Silent SNP A A G novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF680 340252 hgsc.bcm.edu;ucsc.edu 37 7 63982483 63982483 + Missense_Mutation SNP T T C novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF682 91120 hgsc.bcm.edu;ucsc.edu 37 19 20117844 20117844 + Missense_Mutation SNP T T A novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF683 257101 hgsc.bcm.edu 37 1 26691287 26691310 + In_Frame_Del DEL CCACCGAGCGCTGGGGTGCCCCAG CCACCGAGCGCTGGGGTGCCCCAG - rs144078461 bycluster;by1000genomes TCGA-CZ-5459-01A-01D-1501-10 TCGA-CZ-5459-11A-01D-1501-10 CCACCGAGCGCTGGGGTGCCCCAG CCACCGAGCGCTGGGGTGCCCCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF683 257101 hgsc.bcm.edu 37 1 26691355 26691355 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF683(dist=8444) 0 hgsc.bcm.edu 37 1 26707710 26707710 + IGR SNP C C A novel unknown TCGA-CJ-5681-01A-11D-1534-10 TCGA-CJ-5681-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF683(dist=8672) 0 hgsc.bcm.edu 37 1 26707938 26707938 + IGR SNP G G A rs138164783 unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF684 127396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41007325 41007325 + Missense_Mutation SNP G G A novel unknown TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF684 127396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41012841 41012841 + Silent SNP T T C novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF687 57592 broad.mit.edu 37 1 151262327 151262328 + Frame_Shift_Ins INS - C C novel unknown TCGA-BP-5174-01A-01D-1429-08 TCGA-BP-5174-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF687 57592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151259347 151259347 + Missense_Mutation SNP C C G novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF687 57592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151259628 151259628 + Missense_Mutation SNP A A T rs149043825 unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF687 57592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151263418 151263418 + Silent SNP C C A novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF687 57592 hgsc.bcm.edu 37 1 151259273 151259273 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF687 57592 hgsc.bcm.edu;ucsc.edu 37 1 151261955 151261955 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4814-01A-01D-1361-10 TCGA-B0-4814-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF687 57592 hgsc.bcm.edu;ucsc.edu 37 1 151261955 151261955 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4870-01A-01D-1373-10 TCGA-CJ-4870-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF688 146542 broad.mit.edu 37 16 30581153 30581153 + 3'UTR SNP G A A novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF688 146542 broad.mit.edu 37 16 30581350 30581351 + Frame_Shift_Ins INS - C C novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF692 55657 broad.mit.edu 37 1 249151932 249151932 + Intron SNP A C C novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF692 55657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 249151997 249151997 + Intron SNP G G A novel unknown TCGA-B4-5377-01A-01D-1501-10 TCGA-B4-5377-10A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF692 55657 hgsc.bcm.edu;ucsc.edu 37 1 249150756 249150764 + Frame_Shift_Del DEL CCAAATCTG CCAAATCTG - novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 CCAAATCTG CCAAATCTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF696 79943 broad.mit.edu 37 8 144380753 144380753 + 3'UTR DEL A - - rs151282921 by1000genomes TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF697 90874 hgsc.bcm.edu;ucsc.edu 37 1 120188672 120188672 + Intron SNP C C T novel unknown TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF699 374879 hgsc.bcm.edu;ucsc.edu 37 19 9406534 9406534 + Missense_Mutation SNP A A T novel unknown TCGA-CJ-4895-01A-01D-1373-10 TCGA-CJ-4895-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF699 374879 hgsc.bcm.edu;ucsc.edu 37 19 9407410 9407410 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF700 90592 broad.mit.edu;hgsc.bcm.edu 37 19 12036011 12036011 + 5'UTR SNP T T A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF700 90592 broad.mit.edu;hgsc.bcm.edu 37 19 12060408 12060408 + Silent SNP T T C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF701 55762 broad.mit.edu 37 19 53087030 53087030 + 3'UTR SNP T C C novel unknown TCGA-BP-4971-01A-01D-1462-08 TCGA-BP-4971-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF702P 79986 broad.mit.edu 37 19 53472545 53472545 + RNA SNP G A A novel unknown TCGA-EU-5904-01A-11D-1669-08 TCGA-EU-5904-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF702P 79986 broad.mit.edu 37 19 53472914 53472914 + RNA SNP A G G novel unknown TCGA-B8-5163-01A-01D-1421-08 TCGA-B8-5163-10A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF702P 79986 broad.mit.edu 37 19 53489892 53489892 + RNA SNP G T T novel unknown TCGA-B8-4154-01A-01D-1251-10 TCGA-B8-4154-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF703 80139 broad.mit.edu;hgsc.bcm.edu 37 8 37556057 37556057 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF704 619279 hgsc.bcm.edu;ucsc.edu 37 8 81577134 81577134 + Silent SNP G G T novel unknown TCGA-B0-4819-01A-01D-1361-10 TCGA-B0-4819-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF704 619279 hgsc.bcm.edu;ucsc.edu 37 8 81577290 81577298 + In_Frame_Del DEL ATCACTGTA ATCACTGTA - novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 ATCACTGTA ATCACTGTA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF706 51123 hgsc.bcm.edu;ucsc.edu 37 8 102213933 102213933 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF707 286075 broad.mit.edu;ucsc.edu 37 8 144776493 144776493 + Silent SNP C T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF70 7621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24086149 24086149 + Silent SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF708 7562 broad.mit.edu;hgsc.bcm.edu 37 19 21492050 21492050 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 Illumina HiSeq ZNF709 163051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12574850 12574850 + Missense_Mutation SNP C C T rs183982301 by1000genomes;alternate_allele TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF710 374655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90616318 90616318 + Missense_Mutation SNP A A C novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF710 374655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90616473 90616473 + Silent SNP C C G rs146964408 byfrequency;alternate_allele TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF710 374655 hgsc.bcm.edu;ucsc.edu 37 15 90616441 90616441 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF711 7552 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 84510342 84510342 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF711 7552 hgsc.bcm.edu 37 X 84526278 84526278 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF711 7552 hgsc.bcm.edu 37 X 84526414 84526414 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF713 349075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 56007482 56007482 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF713 349075 hgsc.bcm.edu 37 7 55991394 55991394 + Splice_Site SNP T T A novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF714 148206 broad.mit.edu;hgsc.bcm.edu 37 19 21300510 21300510 + Missense_Mutation SNP A A G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF714 148206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21299645 21299645 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4640-01A-02D-1386-10 TCGA-CJ-4640-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF714 148206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21300402 21300402 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF714 148206 hgsc.bcm.edu 37 19 21300833 21300835 + In_Frame_Del DEL GAA GAA - novel unknown TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 GAA GAA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF716 441234 broad.mit.edu 37 7 57529077 57529077 + Missense_Mutation SNP G A A novel unknown TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF716 441234 broad.mit.edu 37 7 57529812 57529812 + 3'UTR DEL A - - novel unknown TCGA-B8-5546-01A-01D-1534-10 TCGA-B8-5546-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF716 441234 hgsc.bcm.edu;ucsc.edu 37 7 57528629 57528629 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 broad.mit.edu 37 3 75788376 75788377 + Frame_Shift_Ins INS - TT TT novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF717 100131827 hgsc.bcm.edu 37 3 75786555 75786556 + Frame_Shift_Ins INS - - TG rs141276988 bycluster TCGA-CJ-4878-01A-01D-1373-10 TCGA-CJ-4878-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75786620 75786620 + Silent SNP G G A rs144106206 unknown TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75786681 75786681 + Missense_Mutation SNP G G A rs75784751 bycluster TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF717 100131827 hgsc.bcm.edu 37 3 75787812 75787813 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4836-01A-01D-1373-10 TCGA-B0-4836-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75787812 75787813 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-4890-01A-01D-1373-10 TCGA-CJ-4890-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75788130 75788130 + Missense_Mutation SNP C C T rs145829878 bycluster;alternate_allele TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75788376 75788377 + Frame_Shift_Ins INS - - TT novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75790797 75790797 + Missense_Mutation SNP C C T rs147946451 by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF717 100131827 hgsc.bcm.edu 37 3 75790810 75790811 + Frame_Shift_Ins INS - - T novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF717 100131827 hgsc.bcm.edu 37 3 75790810 75790811 + Frame_Shift_Ins INS - - T novel unknown TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF717(dist=152462) 0 hgsc.bcm.edu 37 3 75986717 75986717 + IGR SNP G G A rs78834776 bycluster TCGA-BP-4981-01A-01D-1462-08 TCGA-BP-4981-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF717(dist=152486) 0 hgsc.bcm.edu 37 3 75986741 75986741 + IGR SNP G G T novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF718 255403 hgsc.bcm.edu;ucsc.edu 37 4 145214 145214 + Intron SNP A A G novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF720 124411 broad.mit.edu 37 16 31724673 31724673 + 5'UTR SNP G C C novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF720 124411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31724708 31724708 + 5'UTR SNP C C T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF721 170960 broad.mit.edu;hgsc.bcm.edu 37 4 436954 436954 + Missense_Mutation SNP T T G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF721 170960 hgsc.bcm.edu;ucsc.edu 37 4 437566 437566 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF727 442319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 63537854 63537854 + Nonsense_Mutation SNP A A T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF732 654254 broad.mit.edu;ucsc.edu 37 4 265156 265156 + Missense_Mutation SNP G C C novel unknown TCGA-A3-3363-01A-01D-0966-08 TCGA-A3-3363-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF732 654254 hgsc.bcm.edu 37 4 265967 265967 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4762-01A-02D-1366-10 TCGA-BP-4762-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF732 654254 hgsc.bcm.edu 37 4 265967 265967 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF732 654254 hgsc.bcm.edu;ucsc.edu 37 4 265943 265943 + Missense_Mutation SNP A A G novel unknown TCGA-CJ-4635-01A-02D-1373-10 TCGA-CJ-4635-11B-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF735 730291 broad.mit.edu;hgsc.bcm.edu 37 7 63680408 63680408 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4641-01A-02D-1386-10 TCGA-CJ-4641-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF737 100129842 broad.mit.edu 37 19 20727828 20727828 + Missense_Mutation SNP T C C novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF738 148203 broad.mit.edu 37 19 21563808 21563808 + 3'UTR SNP G T T novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF738 148203 broad.mit.edu 37 19 21565886 21565886 + 3'UTR SNP A T T novel unknown TCGA-CZ-4863-01A-01D-1501-10 TCGA-CZ-4863-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF738 148203 broad.mit.edu 37 19 21567223 21567223 + 3'UTR SNP G T T novel unknown TCGA-A3-3383-01A-01D-0966-08 TCGA-A3-3383-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF740 283337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53579212 53579212 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF740 283337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53579788 53579788 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF746 155061 hgsc.bcm.edu;ucsc.edu 37 7 149174659 149174659 + Silent SNP G G T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF747 65988 broad.mit.edu 37 16 30545836 30545836 + Silent SNP C A A novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF749 388567 broad.mit.edu;hgsc.bcm.edu 37 19 57955937 57955937 + Missense_Mutation SNP A A G novel unknown TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF749 388567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57954668 57954668 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF75A 7627 broad.mit.edu 37 16 3361885 3361885 + 5'UTR SNP G A A novel unknown TCGA-B0-5698-01A-11D-1669-08 TCGA-B0-5698-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF75D 7626 broad.mit.edu 37 X 134428150 134428150 + 5'UTR SNP G A A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF75D 7626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 134427883 134427883 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF75D 7626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 134427942 134427942 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF75D 7626 hgsc.bcm.edu 37 X 134425421 134425421 + Missense_Mutation SNP T T G novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF761 388561 broad.mit.edu 37 19 53946133 53946133 + Intron DEL A - - rs140974552 bycluster;by1000genomes TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF761 388561 broad.mit.edu;hgsc.bcm.edu 37 19 53958116 53958116 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF761 388561 broad.mit.edu;hgsc.bcm.edu 37 19 53959771 53959771 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF761 388561 hgsc.bcm.edu 37 19 53958187 53958187 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF763 284390 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12089265 12089265 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF763 284390 hgsc.bcm.edu;ucsc.edu 37 19 12089194 12089194 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF764 92595 broad.mit.edu;ucsc.edu 37 16 30569111 30569111 + Missense_Mutation SNP A C C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF765 91661 broad.mit.edu 37 19 53911474 53911474 + Silent SNP A G G novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF765 91661 broad.mit.edu 37 19 53912659 53912659 + 3'UTR SNP C T T novel unknown TCGA-AK-3436-01A-02D-1386-10 TCGA-AK-3436-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF765 91661 broad.mit.edu 37 19 53912922 53912922 + 3'UTR SNP A G G novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF765 91661 broad.mit.edu 37 19 53926630 53926630 + RNA SNP C T T novel unknown TCGA-BP-4967-01A-01D-1462-08 TCGA-BP-4967-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF765 91661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53910951 53910951 + Missense_Mutation SNP A A T novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF766 90321 broad.mit.edu 37 19 52780712 52780712 + Intron DEL A - - novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF766 90321 broad.mit.edu 37 19 52780712 52780712 + Intron DEL A - - novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF76 7629 broad.mit.edu 37 6 35263693 35263694 + 3'UTR INS - T T novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF76 7629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35258122 35258122 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF768 79724 hgsc.bcm.edu;ucsc.edu 37 16 30536622 30536622 + Missense_Mutation SNP T T A novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF770 54989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35274804 35274804 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF770 54989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35275034 35275034 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF771 51333 hgsc.bcm.edu 37 16 30419384 30419384 + Missense_Mutation SNP G G C novel unknown TCGA-AK-3445-01A-02D-1361-10 TCGA-AK-3445-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF772 400720 hgsc.bcm.edu 37 19 57984667 57984667 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4858-01A-01D-1373-10 TCGA-CZ-4858-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF772 400720 hgsc.bcm.edu 37 19 57988666 57988667 + In_Frame_Ins INS - - GCC rs34678661 bycluster;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF772 400720 hgsc.bcm.edu 37 19 57988666 57988667 + In_Frame_Ins INS - - GCC rs34678661 bycluster;by1000genomes TCGA-BP-5194-01A-02D-1429-08 TCGA-BP-5194-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF772 400720 hgsc.bcm.edu 37 19 57988666 57988667 + In_Frame_Ins INS - - GCC rs34678661 bycluster;by1000genomes TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF772 400720 hgsc.bcm.edu 37 19 57988666 57988667 + In_Frame_Ins INS - - GCC rs34678661 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF773 374928 broad.mit.edu;hgsc.bcm.edu 37 19 58018037 58018037 + Nonsense_Mutation SNP A A T novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF7 7553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 146067912 146067912 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF77 58492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2933730 2933730 + Missense_Mutation SNP T T A novel unknown TCGA-BP-5180-01A-01D-1429-08 TCGA-BP-5180-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF77 58492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2934740 2934740 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF777 27153 hgsc.bcm.edu;ucsc.edu 37 7 149133877 149133877 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF778 197320 hgsc.bcm.edu 37 16 89294595 89294595 + Silent SNP C C T rs74466939 bycluster;byfrequency;by1000genomes TCGA-B0-4839-01A-01D-1373-10 TCGA-B0-4839-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF780A 284323 broad.mit.edu 37 19 40578057 40578057 + 3'UTR SNP C T T novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF780A 284323 broad.mit.edu 37 19 40578071 40578071 + 3'UTR SNP G A A novel unknown TCGA-BP-4999-01A-01D-1462-08 TCGA-BP-4999-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF780A 284323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40582092 40582092 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF780B 163131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40540306 40540306 + Silent SNP G G A novel unknown TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF780B 163131 hgsc.bcm.edu 37 19 40542428 40542428 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF780B 163131 hgsc.bcm.edu;ucsc.edu 37 19 40540306 40540306 + Silent SNP G G A novel unknown TCGA-B0-4817-01A-01D-1361-10 TCGA-B0-4817-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF781 163115 broad.mit.edu 37 19 38161187 38161188 + 5'UTR INS - GA GA novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF781 163115 broad.mit.edu 37 19 38161187 38161188 + 5'UTR INS - GA GA novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF781 163115 broad.mit.edu 37 19 38161190 38161191 + 5'UTR DEL CC - - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF781 163115 broad.mit.edu 37 19 38161190 38161191 + 5'UTR DEL CC - - novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF781 163115 hgsc.bcm.edu;ucsc.edu 37 19 38160410 38160410 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF782 158431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 99581317 99581317 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF782 158431 broad.mit.edu;ucsc.edu 37 9 99580322 99580322 + Silent SNP G A A novel unknown TCGA-B0-5120-01A-01D-1421-08 TCGA-B0-5120-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF782 158431 hgsc.bcm.edu;ucsc.edu 37 9 99580432 99580432 + Nonsense_Mutation SNP T T A novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF783 100289678 broad.mit.edu;hgsc.bcm.edu 37 7 148979329 148979329 + Silent SNP C C T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF783 100289678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148963737 148963737 + Silent SNP G G T novel unknown TCGA-CW-5585-01A-01D-1534-10 TCGA-CW-5585-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF785 146540 broad.mit.edu 37 16 30593843 30593843 + 3'UTR SNP C T T novel unknown TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF785 146540 hgsc.bcm.edu 37 16 30594709 30594718 + Frame_Shift_Del DEL TTTTTGTTTT TTTTTGTTTT - novel unknown TCGA-B8-4148-01A-02D-1386-10 TCGA-B8-4148-10A-01D-1251-10 TTTTTGTTTT TTTTTGTTTT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF786 136051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148769510 148769510 + Silent SNP A A T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF786 136051 hgsc.bcm.edu 37 7 148768360 148768360 + Silent SNP G G T novel unknown TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF787 126208 hgsc.bcm.edu;ucsc.edu 37 19 56614566 56614566 + Silent SNP G G C novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF788 388507 broad.mit.edu 37 19 12222351 12222351 + 5'UTR SNP G A A novel unknown TCGA-B0-5092-01A-01D-1421-08 TCGA-B0-5092-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF788 388507 broad.mit.edu 37 19 12223137 12223137 + Frame_Shift_Del DEL A - - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF789 285989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99084910 99084910 + Silent SNP T T C novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF790 388536 broad.mit.edu 37 19 37309182 37309184 + 3'UTR DEL CTG - - rs10564276 bycluster;by1000genomes TCGA-BP-4991-01A-01D-1462-08 TCGA-BP-4991-11A-01D-1462-08 CTG CTG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF790 388536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37310789 37310789 + Missense_Mutation SNP G G C novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF790 388536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37314189 37314189 + Missense_Mutation SNP G G T novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF791 163049 hgsc.bcm.edu;ucsc.edu 37 19 12739350 12739350 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4813-01A-01D-1361-10 TCGA-B0-4813-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF791 163049 hgsc.bcm.edu;ucsc.edu 37 19 12739410 12739410 + Missense_Mutation SNP A A G rs148416734 unknown TCGA-CJ-4874-01A-01D-1373-10 TCGA-CJ-4874-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF792 126375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35449369 35449369 + Missense_Mutation SNP C C T novel unknown TCGA-B0-5080-01A-01D-1501-10 TCGA-B0-5080-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF793 390927 broad.mit.edu 37 19 38027920 38027920 + Silent SNP G A A novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF793 390927 broad.mit.edu 37 19 38028814 38028814 + 3'UTR DEL T - - novel unknown TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF79 7633 broad.mit.edu 37 9 130187130 130187130 + Intron SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF79 7633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130206351 130206351 + Silent SNP T T C novel unknown TCGA-EU-5905-01A-11D-1669-08 TCGA-EU-5905-10A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF79 7633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130207059 130207059 + Silent SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF79 7633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130207060 130207060 + Missense_Mutation SNP T T C novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF799 90576 broad.mit.edu 37 19 12501081 12501081 + 3'UTR SNP G T T rs1025025 bycluster;byfrequency;byhapmap TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF799 90576 broad.mit.edu 37 19 12501094 12501094 + 3'UTR SNP G A A rs75512231 unknown TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF799 90576 broad.mit.edu;hgsc.bcm.edu 37 19 12501322 12501322 + Frame_Shift_Del DEL A A - novel unknown TCGA-B0-4811-01A-01D-1501-10 TCGA-B0-4811-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF799 90576 hgsc.bcm.edu 37 19 12511840 12511840 + Intron SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF800 168850 broad.mit.edu;hgsc.bcm.edu 37 7 127013601 127013601 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-4866-01A-01D-1501-10 TCGA-CZ-4866-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ZNF800 168850 broad.mit.edu;hgsc.bcm.edu 37 7 127014965 127014965 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ZNF800 168850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127013660 127013660 + Frame_Shift_Del DEL G G - novel unknown TCGA-B8-4622-01A-02D-1553-08 TCGA-B8-4622-11A-01D-1553-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF800 168850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127013721 127013721 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4968-01A-01D-1462-08 TCGA-BP-4968-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I Capture PGM Illumina HiSeq ZNF800 168850 hgsc.bcm.edu;ucsc.edu 37 7 127017270 127017270 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4849-01A-01D-1361-10 TCGA-B0-4849-11A-01D-1361-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM SOLID ZNF804A 91752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 185801058 185801058 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804A 91752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 185801482 185801482 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5173-01A-01D-1429-08 TCGA-BP-5173-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804A 91752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 185802977 185802977 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5175-01A-01D-1429-08 TCGA-BP-5175-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804A 91752 hgsc.bcm.edu 37 2 185802211 185802211 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF804A 91752 hgsc.bcm.edu;ucsc.edu 37 2 185731108 185731109 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-B0-4707-01A-01D-1361-10 TCGA-B0-4707-11A-01D-1361-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF804A 91752 hgsc.bcm.edu;ucsc.edu 37 2 185800961 185800961 + Missense_Mutation SNP C C A novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF804A(dist=576283) 0 hgsc.bcm.edu;ucsc.edu 37 2 186380497 186380497 + IGR SNP A A G novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804A(dist=576345) 0 hgsc.bcm.edu;ucsc.edu 37 2 186380559 186380559 + IGR SNP G G C novel unknown TCGA-CZ-5463-01A-01D-1501-10 TCGA-CZ-5463-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804B 219578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 88963296 88963296 + Missense_Mutation SNP G G A novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804B 219578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 88963886 88963886 + Missense_Mutation SNP T T G novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804B 219578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 88965798 88965798 + Missense_Mutation SNP C C T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804B 219578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 88966113 88966113 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804B 219578 hgsc.bcm.edu;ucsc.edu 37 7 88962701 88962702 + Frame_Shift_Ins INS - - A novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF804B 219578 hgsc.bcm.edu;ucsc.edu 37 7 88964196 88964196 + Missense_Mutation SNP T T A rs74687205 bycluster;byfrequency;by1000genomes TCGA-BP-4774-01A-01D-1366-10 TCGA-BP-4774-11A-01D-1367-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF805 390980 broad.mit.edu 37 19 57764639 57764639 + Missense_Mutation SNP C G G novel unknown TCGA-AK-3455-01A-01D-0966-08 TCGA-AK-3455-10A-01D-0966-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF805 390980 broad.mit.edu 37 19 57773719 57773720 + 3'UTR DEL AA - - rs112260155 unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 AA AA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF805 390980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57752278 57752278 + Missense_Mutation SNP G G T novel unknown TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF805 390980 broad.mit.edu;ucsc.edu 37 19 57765250 57765250 + Nonsense_Mutation SNP A T T novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF80 7634 hgsc.bcm.edu 37 3 113955638 113955638 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4875-01A-01D-1373-10 TCGA-CJ-4875-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF808 388558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53057358 53057358 + Nonsense_Mutation SNP A A T novel unknown TCGA-EU-5906-01A-11D-1669-08 TCGA-EU-5906-10A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF808 388558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53058493 53058493 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF814 730051 broad.mit.edu 37 19 58385546 58385546 + Missense_Mutation SNP G T T novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58385546 58385546 + Missense_Mutation SNP G T T novel unknown TCGA-B8-4146-01B-11D-1669-08 TCGA-B8-4146-10A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58385546 58385546 + Missense_Mutation SNP G T T novel unknown TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58385762 58385762 + Silent SNP C G G novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58385762 58385762 + Silent SNP C G G novel unknown TCGA-CZ-5987-01A-11D-1669-08 TCGA-CZ-5987-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58385927 58385927 + Frame_Shift_Del DEL G - - novel unknown TCGA-BP-5196-01A-01D-1429-08 TCGA-BP-5196-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58386503 58386503 + Silent SNP A C C novel unknown TCGA-B8-5551-01A-01D-1534-10 TCGA-B8-5551-10A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu 37 19 58400240 58400240 + 5'UTR SNP C T T novel unknown TCGA-B0-5694-01A-11D-1534-10 TCGA-B0-5694-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF814 730051 broad.mit.edu;hgsc.bcm.edu 37 19 58386268 58386268 + Missense_Mutation SNP G G T novel unknown TCGA-CJ-5675-01A-11D-1534-10 TCGA-CJ-5675-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF814 730051 hgsc.bcm.edu 37 19 58385546 58385546 + Missense_Mutation SNP G G T novel unknown TCGA-DV-5569-01A-01D-1534-10 TCGA-DV-5569-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF816 125893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53453353 53453353 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5119-01A-02D-1421-08 TCGA-B0-5119-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF816 125893 hgsc.bcm.edu 37 19 53454729 53454729 + Frame_Shift_Del DEL T T - novel unknown TCGA-B8-4621-01A-01D-1501-10 TCGA-B8-4621-10A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF821 55565 hgsc.bcm.edu 37 16 71893982 71893982 + Missense_Mutation SNP A A C novel unknown TCGA-BP-4352-01A-01D-1366-10 TCGA-BP-4352-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF823 55552 hgsc.bcm.edu;ucsc.edu 37 19 11833073 11833073 + Missense_Mutation SNP T T A novel unknown TCGA-B0-4841-01A-01D-1361-10 TCGA-B0-4841-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF827 152485 broad.mit.edu 37 4 146824030 146824030 + Silent SNP C T T novel unknown TCGA-CJ-4634-01A-02D-1386-10 TCGA-CJ-4634-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF827 152485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 146824164 146824164 + Silent SNP G G A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF828 0 hgsc.bcm.edu;ucsc.edu 37 13 115090276 115090277 + Frame_Shift_Ins INS - - T novel unknown TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF829 374899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37382715 37382715 + Silent SNP A A G novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF830 91603 broad.mit.edu 37 17 33289804 33289804 + 3'UTR SNP C A A novel unknown TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF831 128611 broad.mit.edu 37 20 57766859 57766860 + Frame_Shift_Del DEL GG - - novel unknown TCGA-CZ-5460-01A-01D-1501-10 TCGA-CZ-5460-11A-01D-1501-10 GG GG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF831 128611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57766296 57766296 + Silent SNP C C T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF831 128611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57769082 57769082 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF831 128611 hgsc.bcm.edu 37 20 57769147 57769147 + Missense_Mutation SNP G G A novel unknown TCGA-DV-5575-01A-01D-1534-10 TCGA-DV-5575-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF831 128611 hgsc.bcm.edu 37 20 57769303 57769303 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF831 128611 hgsc.bcm.edu 37 20 57782030 57782030 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF831 128611 hgsc.bcm.edu 37 20 57782032 57782032 + Silent SNP A A G novel unknown TCGA-CJ-4894-01A-01D-1373-10 TCGA-CJ-4894-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF833 0 broad.mit.edu 37 19 11762663 11762663 + RNA SNP G A A novel unknown TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF83 55769 broad.mit.edu;hgsc.bcm.edu 37 19 53116221 53116221 + RNA SNP T T A novel unknown TCGA-BP-5195-01A-02D-1429-08 TCGA-BP-5195-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF83 55769 broad.mit.edu;hgsc.bcm.edu 37 19 53117760 53117760 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF83 55769 hgsc.bcm.edu 37 19 53117118 53117118 + Missense_Mutation SNP C C T novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF836 162962 broad.mit.edu;hgsc.bcm.edu 37 19 52658790 52658790 + Missense_Mutation SNP G G C novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF836 162962 hgsc.bcm.edu;ucsc.edu 37 19 52659379 52659379 + Silent SNP A A T novel unknown TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF841 284371 broad.mit.edu 37 19 52570738 52570738 + Nonsense_Mutation SNP C A A novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF841 284371 broad.mit.edu;hgsc.bcm.edu 37 19 52568835 52568835 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF844 284391 broad.mit.edu 37 19 12188257 12188257 + 3'UTR SNP A T T novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF844 284391 broad.mit.edu;hgsc.bcm.edu 37 19 12187458 12187458 + Missense_Mutation SNP A A T novel unknown TCGA-AK-3456-01A-02D-1386-10 TCGA-AK-3456-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF844 284391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12186656 12186656 + Missense_Mutation SNP C C A novel unknown TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF844 284391 hgsc.bcm.edu;ucsc.edu 37 19 12186207 12186207 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4797-01A-01D-1373-10 TCGA-BP-4797-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF845 91664 broad.mit.edu 37 19 53856730 53856730 + Silent SNP G A A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF845 91664 broad.mit.edu 37 19 53856761 53856761 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF845 91664 broad.mit.edu;hgsc.bcm.edu 37 19 53856730 53856730 + Silent SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF845 91664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53856702 53856702 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF845 91664 broad.mit.edu;ucsc.edu 37 19 53856702 53856702 + Missense_Mutation SNP G A A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF845 91664 hgsc.bcm.edu 37 19 53856496 53856496 + Silent SNP A A G novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF846 162993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9868360 9868360 + Missense_Mutation SNP G G C novel unknown TCGA-B0-4815-01A-01D-1501-10 TCGA-B0-4815-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF846 162993 hgsc.bcm.edu;ucsc.edu 37 19 9869150 9869150 + Frame_Shift_Del DEL T T - novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF853 54753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6661158 6661158 + Missense_Mutation SNP C C T novel unknown TCGA-B8-5549-01A-01D-1534-10 TCGA-B8-5549-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF85 7639 broad.mit.edu 37 19 21106092 21106092 + 5'UTR SNP T C C novel unknown TCGA-B8-4153-01B-11D-1669-08 TCGA-B8-4153-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF860 344787 broad.mit.edu 37 3 32030516 32030516 + 5'UTR SNP G C C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF860 344787 hgsc.bcm.edu;ucsc.edu 37 3 32031883 32031883 + Missense_Mutation SNP C C A novel unknown TCGA-DV-5565-01A-01D-1534-10 TCGA-DV-5565-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF862 643641 broad.mit.edu 37 7 149544912 149544912 + Silent SNP C A A novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF862 643641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 149559035 149559035 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF862 643641 hgsc.bcm.edu;ucsc.edu 37 7 149559020 149559020 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF8 7554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58805702 58805702 + Silent SNP C C G rs142117860 unknown;alternate_allele TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF878 729747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12155240 12155240 + Missense_Mutation SNP A A T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF879 345462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178459395 178459395 + Missense_Mutation SNP A A G novel unknown TCGA-BP-4163-01A-02D-1386-10 TCGA-BP-4163-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF879 345462 broad.mit.edu;ucsc.edu 37 5 178454496 178454496 + Missense_Mutation SNP T G G novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF880 400713 hgsc.bcm.edu 37 19 52888050 52888050 + Missense_Mutation SNP A A G rs76053634 byfrequency TCGA-BP-4987-01A-01D-1462-08 TCGA-BP-4987-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF880 400713 hgsc.bcm.edu 37 19 52888050 52888050 + Missense_Mutation SNP A A G rs76053634 byfrequency TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF883 169834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 115759684 115759684 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF90 7643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 20229513 20229513 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5701-01A-11D-1534-10 TCGA-B0-5701-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF91 7644 broad.mit.edu 37 19 23543539 23543539 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3362-01A-02D-1386-10 TCGA-A3-3362-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF91 7644 broad.mit.edu;hgsc.bcm.edu 37 19 23543382 23543382 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4842-01A-02D-1421-08 TCGA-B0-4842-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF91 7644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 23545331 23545331 + Missense_Mutation SNP C C G novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF91 7644 hgsc.bcm.edu;ucsc.edu 37 19 23543184 23543187 + Frame_Shift_Del DEL GATT GATT - novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 GATT GATT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF92 168374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 64864567 64864567 + Frame_Shift_Del DEL T T - novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF92 168374 hgsc.bcm.edu;ucsc.edu 37 7 64852852 64852852 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF93 81931 broad.mit.edu;hgsc.bcm.edu 37 19 20044531 20044531 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5189-01A-02D-1429-08 TCGA-BP-5189-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF98 148198 broad.mit.edu 37 19 22574468 22574468 + Silent SNP G A A rs4100176 bycluster TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF98 148198 broad.mit.edu 37 19 22574754 22574754 + Missense_Mutation SNP T G G novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF98 148198 broad.mit.edu 37 19 22605105 22605105 + 5'UTR SNP C T T novel unknown TCGA-B0-5115-01A-01D-1421-08 TCGA-B0-5115-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF98 148198 broad.mit.edu 37 19 22605147 22605147 + 5'UTR SNP A C C novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZNF98 148198 broad.mit.edu;hgsc.bcm.edu 37 19 22574443 22574443 + Missense_Mutation SNP T T C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF98 148198 hgsc.bcm.edu 37 19 22574818 22574818 + Missense_Mutation SNP T T C rs78213198 byfrequency TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNF99 7652 broad.mit.edu;hgsc.bcm.edu 37 19 22940439 22940439 + Missense_Mutation SNP C C G novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF99 7652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 22952718 22952718 + Splice_Site SNP C C A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF99 7652 hgsc.bcm.edu 37 19 22939560 22939560 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF99 7652 hgsc.bcm.edu 37 19 22939564 22939564 + Silent SNP A A G rs75352526 unknown TCGA-CJ-4901-01A-01D-1429-08 TCGA-CJ-4901-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNF99 7652 hgsc.bcm.edu 37 19 22939931 22939931 + Silent SNP C C T rs34378744 by1000genomes TCGA-BP-4166-01A-02D-1366-10 TCGA-BP-4166-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu 37 20 47874193 47874193 + Missense_Mutation SNP C C G novel unknown TCGA-CZ-5988-01A-11D-1669-08 TCGA-CZ-5988-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47886935 47886935 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47887117 47887117 + Missense_Mutation SNP T T A novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47887879 47887879 + Missense_Mutation SNP G G C novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47887899 47887899 + Missense_Mutation SNP T T G novel unknown TCGA-B8-5164-01A-01D-1421-08 TCGA-B8-5164-10A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47887950 47887950 + Silent SNP C C T novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 hgsc.bcm.edu 37 20 47865261 47865261 + Missense_Mutation SNP T T G novel unknown TCGA-B0-4824-01A-01D-1361-10 TCGA-B0-4824-11A-01D-1361-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNFX1 57169 hgsc.bcm.edu 37 20 47886860 47886860 + Missense_Mutation SNP C C T novel unknown TCGA-AK-3461-01A-02D-1361-10 TCGA-AK-3461-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNFX1 57169 hgsc.bcm.edu;ucsc.edu 37 20 47864087 47864093 + Frame_Shift_Del DEL AGGCCAG AGGCCAG - novel unknown TCGA-A3-3326-01A-01D-0966-08 TCGA-A3-3326-11A-01D-0966-08 AGGCCAG AGGCCAG . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNFX1 57169 hgsc.bcm.edu;ucsc.edu 37 20 47869361 47869361 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNFX1 57169 hgsc.bcm.edu;ucsc.edu 37 20 47874148 47874148 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4691-01A-01D-1361-10 TCGA-B0-4691-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNHIT1 10467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100867049 100867049 + Silent SNP A A T novel unknown TCGA-B0-5100-01A-01D-1421-08 TCGA-B0-5100-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNHIT1 10467 hgsc.bcm.edu 37 7 100867081 100867081 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4347-01A-01D-1366-10 TCGA-BP-4347-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNHIT2 741 hgsc.bcm.edu;ucsc.edu 37 11 64883959 64883959 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZNHIT6 54680 hgsc.bcm.edu;ucsc.edu 37 1 86123567 86123567 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZNHIT6 54680 hgsc.bcm.edu;ucsc.edu 37 1 86123569 86123569 + Missense_Mutation SNP A A T novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZP1 22917 broad.mit.edu;hgsc.bcm.edu 37 11 60638381 60638381 + Intron SNP G G A novel unknown TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZP1 22917 hgsc.bcm.edu 37 11 60637829 60637829 + Missense_Mutation SNP G G A novel unknown TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZP2 7783 hgsc.bcm.edu 37 16 21208874 21208875 + Frame_Shift_Ins INS - - C novel unknown TCGA-CJ-5679-01A-11D-1534-10 TCGA-CJ-5679-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZP3 7784 hgsc.bcm.edu 37 7 76071183 76071184 + Frame_Shift_Ins INS - - G rs3215870 bycluster TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZP3 7784 hgsc.bcm.edu 37 7 76071183 76071184 + Frame_Shift_Ins INS - - G rs3215870 bycluster TCGA-BP-4807-01A-01D-1373-10 TCGA-BP-4807-11A-01D-1373-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZP4 57829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 238048491 238048491 + Missense_Mutation SNP C C A novel unknown TCGA-A3-3367-01A-02D-1421-08 TCGA-A3-3367-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZP4 57829 broad.mit.edu;ucsc.edu 37 1 238045723 238045723 + Nonstop_Mutation SNP T A A novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZP4 57829 hgsc.bcm.edu 37 1 238053368 238053368 + Missense_Mutation SNP T T C rs183324278 by1000genomes TCGA-BP-4165-01A-02D-1366-10 TCGA-BP-4165-11A-01D-1366-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZP4 57829 hgsc.bcm.edu;ucsc.edu 37 1 238053425 238053425 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZPBP 11055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50070788 50070788 + Silent SNP A A T novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZPBP 11055 hgsc.bcm.edu 37 7 50057912 50057912 + Missense_Mutation SNP A A G novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZPBP2 124626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38031594 38031594 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZPBP2 124626 hgsc.bcm.edu;ucsc.edu 37 17 38032946 38032946 + Missense_Mutation SNP C C T novel unknown TCGA-BP-4170-01A-02D-1366-10 TCGA-BP-4170-11A-01D-1366-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZPLD1 131368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 102157367 102157367 + Silent SNP T T C novel unknown TCGA-B2-4098-01A-02D-1386-10 TCGA-B2-4098-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZPLD1 131368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 102181210 102181210 + Missense_Mutation SNP A A C novel unknown TCGA-CZ-5468-01A-01D-1501-10 TCGA-CZ-5468-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB1 54764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126662823 126662823 + Missense_Mutation SNP T T C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB1 54764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126662867 126662867 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5095-01A-01D-1421-08 TCGA-B0-5095-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB1 54764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126670374 126670374 + Silent SNP A A G novel unknown TCGA-BP-5178-01A-01D-1429-08 TCGA-BP-5178-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB1 54764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126671767 126671767 + Silent SNP G G A rs75293113 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB1 54764 hgsc.bcm.edu 37 10 126673560 126673561 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5176-01A-01D-1429-08 TCGA-BP-5176-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB1 54764 hgsc.bcm.edu 37 10 126673560 126673561 + Frame_Shift_Ins INS - - A novel unknown TCGA-BP-5200-01A-01D-1429-08 TCGA-BP-5200-11A-01D-1429-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB3 84083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135966529 135966529 + Missense_Mutation SNP C C G novel unknown TCGA-B0-5402-01A-01D-1501-10 TCGA-B0-5402-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZRANB3 84083 hgsc.bcm.edu;ucsc.edu 37 2 135988351 135988351 + Silent SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSCAN10 84891 broad.mit.edu 37 16 3139570 3139570 + Missense_Mutation SNP G A A novel unknown TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN1 284312 broad.mit.edu;hgsc.bcm.edu 37 19 58549265 58549265 + Nonsense_Mutation SNP G G T novel unknown TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN1 284312 hgsc.bcm.edu 37 19 58551902 58551902 + Missense_Mutation SNP A A C novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN1 284312 hgsc.bcm.edu 37 19 58563898 58563898 + Missense_Mutation SNP C C A novel unknown TCGA-B8-4622-01A-02D-1361-10 TCGA-B8-4622-10A-01D-1361-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSCAN12 9753 broad.mit.edu 37 6 28348341 28348341 + 3'UTR SNP A C C novel unknown TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN16 80345 hgsc.bcm.edu;ucsc.edu 37 6 28093441 28093441 + Frame_Shift_Del DEL T T - novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN16 80345 hgsc.bcm.edu;ucsc.edu 37 6 28097728 28097729 + Frame_Shift_Del DEL AT AT - novel unknown TCGA-CJ-4908-01A-01D-1429-08 TCGA-CJ-4908-11A-01D-1429-08 AT AT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN18 65982 broad.mit.edu 37 19 58597720 58597720 + Intron SNP G T T novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN18 65982 broad.mit.edu 37 19 58601733 58601733 + 5'UTR SNP G T T novel unknown TCGA-CW-5580-01A-01D-1669-08 TCGA-CW-5580-11A-02D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN18 65982 broad.mit.edu 37 19 58601748 58601748 + 5'UTR SNP A C C novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN18 65982 broad.mit.edu 37 19 58619075 58619075 + Intron DEL G - - novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN18 65982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58597544 58597544 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN20 7579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33956856 33956856 + Missense_Mutation SNP C C A novel unknown TCGA-BP-5010-01A-02D-1421-08 TCGA-BP-5010-11A-01D-1421-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN20 7579 broad.mit.edu;ucsc.edu 37 1 33960693 33960693 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN20 7579 hgsc.bcm.edu;ucsc.edu 37 1 33960735 33960736 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-B8-5553-01A-01D-1534-10 TCGA-B8-5553-10A-01D-1535-10 TA TA . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN21 7589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99662005 99662005 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5109-01A-02D-1421-08 TCGA-B0-5109-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN21 7589 hgsc.bcm.edu;ucsc.edu 37 7 99661552 99661552 + Frame_Shift_Del DEL A A - novel unknown TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN22 342945 broad.mit.edu 37 19 58846167 58846167 + 5'UTR SNP C T T novel unknown TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN2 54993 broad.mit.edu 37 15 85147434 85147434 + Silent SNP A T T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN2 54993 hgsc.bcm.edu 37 15 85164205 85164205 + Missense_Mutation SNP G G T novel unknown TCGA-BP-4756-01A-01D-1366-10 TCGA-BP-4756-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSCAN2 54993 hgsc.bcm.edu;ucsc.edu 37 15 85164518 85164519 + Frame_Shift_Ins INS - - A novel unknown TCGA-A3-3308-01A-01D-0966-08 TCGA-A3-3308-11A-01D-0966-08 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN2 54993 hgsc.bcm.edu;ucsc.edu 37 15 85164823 85164823 + Missense_Mutation SNP G G C novel unknown TCGA-BP-4758-01A-01D-1366-10 TCGA-BP-4758-11A-01D-1366-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSCAN29 146050 broad.mit.edu 37 15 43652976 43652976 + 3'UTR DEL T - - novel unknown TCGA-CJ-5678-01A-11D-1534-10 TCGA-CJ-5678-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN29 146050 broad.mit.edu 37 15 43653099 43653099 + 3'UTR SNP G A A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN29 146050 broad.mit.edu 37 15 43653100 43653100 + 3'UTR SNP C A A novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN29 146050 broad.mit.edu 37 15 43653101 43653101 + 3'UTR SNP C T T novel unknown TCGA-B0-5710-01A-11D-1669-08 TCGA-B0-5710-11A-01D-1669-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSCAN29 146050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43653850 43653850 + Silent SNP A A G novel unknown TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN29 146050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43661240 43661240 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5705-01A-11D-1534-10 TCGA-B0-5705-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN29 146050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43661269 43661269 + Silent SNP T T C novel unknown TCGA-CZ-5453-01A-01D-1501-10 TCGA-CZ-5453-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN29 146050 hgsc.bcm.edu 37 15 43653322 43653322 + Silent SNP G G A rs35278805 bycluster;byfrequency;by1000genomes TCGA-B0-4697-01A-01D-1361-10 TCGA-B0-4697-11A-01D-1361-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSCAN5A 79149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56732944 56732944 + Missense_Mutation SNP T T C novel unknown TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSCAN5B 342933 hgsc.bcm.edu;ucsc.edu 37 19 56701571 56701571 + Missense_Mutation SNP G G T rs189564920 by1000genomes TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSWIM2 151112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 187693068 187693068 + Silent SNP A A C novel unknown TCGA-CW-5591-01A-01D-1534-10 TCGA-CW-5591-11A-01D-1535-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM2 151112 hgsc.bcm.edu 37 2 187692936 187692937 + In_Frame_Ins INS - - GGG novel unknown TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM3 140831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44506358 44506358 + Silent SNP G G A rs149497744 unknown TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM4 65249 broad.mit.edu 37 19 13941977 13941977 + 3'UTR SNP C A A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSWIM4 65249 broad.mit.edu;hgsc.bcm.edu 37 19 13910687 13910687 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4923-01A-01D-1429-08 TCGA-CJ-4923-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM5 57643 broad.mit.edu 37 1 45484036 45484036 + 3'UTR SNP T C C novel unknown TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZSWIM5 57643 broad.mit.edu;hgsc.bcm.edu 37 1 45484067 45484067 + 3'UTR SNP G G A novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM5 57643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45506168 45506168 + Missense_Mutation SNP G G T novel unknown TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM5 57643 hgsc.bcm.edu;ucsc.edu 37 1 45484291 45484291 + Silent SNP G G A novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSWIM6 57688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 60827477 60827477 + Missense_Mutation SNP T T A novel unknown TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM6 57688 hgsc.bcm.edu 37 5 60822215 60822215 + Frame_Shift_Del DEL A A - novel unknown TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZSWIM6 57688 hgsc.bcm.edu 37 5 60839350 60839350 + Missense_Mutation SNP A A G novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZSWIM6 57688 hgsc.bcm.edu 37 5 60839363 60839364 + Frame_Shift_Del DEL CC CC - novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 CC CC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZUFSP 221302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116977892 116977892 + Missense_Mutation SNP C C T novel unknown TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZUFSP 221302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116979974 116979974 + Missense_Mutation SNP T T C novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZUFSP 221302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116981933 116981933 + Silent SNP A A C novel unknown TCGA-CZ-5466-01A-01D-1501-10 TCGA-CZ-5466-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZUFSP 221302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116987929 116987929 + Missense_Mutation SNP T T G novel unknown TCGA-A3-3357-01A-02D-1421-08 TCGA-A3-3357-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZW10 9183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 113607443 113607443 + Missense_Mutation SNP G G T novel unknown TCGA-B0-4823-01A-02D-1421-08 TCGA-B0-4823-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZWILCH 55055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 66797733 66797733 + RNA SNP A A C novel unknown TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZWILCH 55055 hgsc.bcm.edu 37 15 66824728 66824728 + Silent SNP C C T novel unknown TCGA-BP-4787-01A-01D-1373-10 TCGA-BP-4787-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZWINT 11130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 58120095 58120095 + Missense_Mutation SNP C C G novel unknown TCGA-CJ-4916-01A-01D-1429-08 TCGA-CJ-4916-11A-01D-1429-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZXDA 7789 hgsc.bcm.edu;ucsc.edu 37 X 57935826 57935828 + In_Frame_Del DEL GGT GGT - novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 GGT GGT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZXDB 158586 broad.mit.edu 37 X 57619421 57619421 + Missense_Mutation SNP A G G novel unknown TCGA-A3-3380-01A-01D-0966-08 TCGA-A3-3380-11A-01D-0966-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZXDB 158586 broad.mit.edu 37 X 57620976 57620976 + 3'UTR SNP C T T novel unknown TCGA-CZ-5467-01A-01D-1501-10 TCGA-CZ-5467-11A-01D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZXDC 79364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 126160625 126160625 + Nonsense_Mutation SNP G G A novel unknown TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZYG11B 79699 broad.mit.edu 37 1 53287358 53287358 + 3'UTR SNP T G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZYG11B 79699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53237222 53237222 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-6030-01A-11D-1669-08 TCGA-CJ-6030-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZYG11B 79699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53245564 53245564 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZYG11B 79699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53245634 53245634 + Missense_Mutation SNP T T A novel unknown TCGA-A3-3346-01A-01D-0966-08 TCGA-A3-3346-11A-01D-0966-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZYG11B 79699 hgsc.bcm.edu;ucsc.edu 37 1 53250580 53250580 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZYX 7791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 143079761 143079761 + Missense_Mutation SNP G G A novel unknown TCGA-CW-6093-01A-11D-1669-08 TCGA-CW-6093-11A-01D-1669-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu 37 17 3920345 3920346 + Intron DEL GT - - rs145663023 by1000genomes TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZZEF1 23140 broad.mit.edu 37 17 3920345 3920346 + Intron DEL GT - - rs145663023 by1000genomes TCGA-B0-4818-01A-01D-1501-10 TCGA-B0-4818-11A-01D-1501-10 GT GT . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZZEF1 23140 broad.mit.edu 37 17 3984690 3984690 + Missense_Mutation SNP C T T novel unknown TCGA-BP-4983-01A-01D-1462-08 TCGA-BP-4983-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3920721 3920721 + Missense_Mutation SNP T T G novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3921211 3921211 + Silent SNP C C T novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3945845 3945845 + Missense_Mutation SNP C C T novel unknown TCGA-B0-4816-01A-01D-1501-10 TCGA-B0-4816-11A-02D-1501-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3945851 3945851 + Frame_Shift_Del DEL A A - novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3988990 3988990 + Missense_Mutation SNP G G C novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4005690 4005690 + Silent SNP A A G novel unknown TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4017674 4017674 + Missense_Mutation SNP G G A novel unknown TCGA-B0-5121-01A-02D-1421-08 TCGA-B0-5121-11A-01D-1421-08 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZEF1 23140 hgsc.bcm.edu;ucsc.edu 37 17 4020303 4020303 + Silent SNP C C A novel unknown TCGA-CJ-4885-01A-01D-1373-10 TCGA-CJ-4885-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID ZZZ3 26009 broad.mit.edu 37 1 78031084 78031084 + 3'UTR DEL A - - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZZZ3 26009 broad.mit.edu 37 1 78099072 78099072 + 5'UTR SNP G A A novel unknown TCGA-B2-5635-01A-01D-1534-10 TCGA-B2-5635-10A-01D-1535-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx ZZZ3 26009 broad.mit.edu;hgsc.bcm.edu 37 1 78045311 78045311 + Silent SNP T T C novel unknown TCGA-B0-5113-01A-01D-1421-08 TCGA-B0-5113-11A-01D-1421-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZZ3 26009 hgsc.bcm.edu;ucsc.edu 37 1 78066946 78066946 + Intron SNP G G A novel unknown TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq ZZZ3 26009 hgsc.bcm.edu;ucsc.edu 37 1 78097613 78097613 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4833-01A-01D-1373-10 TCGA-B0-4833-11A-01D-1373-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID HMCN1 83872 ucsc.edu 37 1 185958692 185958692 + Missense_Mutation SNP C C A novel unknown TCGA-BP-4174-01A-02D-1366-10 TCGA-BP-4174-11A-01D-1366-10 C C C A C C Unknown Valid Somatic . . PGM . . SOLID HMCN1 83872 ucsc.edu 37 1 186106949 186106949 + Missense_Mutation SNP C C T novel unknown TCGA-CJ-4884-01A-01D-1373-10 TCGA-CJ-4884-11A-01D-1373-10 C C C T C C Unknown Valid Somatic . . PGM . . SOLID ATM 472 ucsc.edu 37 11 108183185 108183185 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4690-01A-01D-1361-10 TCGA-B0-4690-11A-01D-1361-10 T T T C T T Unknown Valid Somatic . . PGM . . SOLID TP53 7157 ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 bycluster TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C C T C C Unknown Valid Somatic . . PGM . . SOLID NDUFS1 4719 ucsc.edu 37 2 207006752 207006758 + Frame_Shift_Del DEL GCAATTG GCAATTG - novel unknown TCGA-BP-4326-01A-01D-1366-10 TCGA-BP-4326-11A-01D-1366-10 GCAATTG GCAATTG GCAATTG - GCAATTG GCAATTG Unknown Valid Somatic . . PGM . . SOLID MACROD2 140733 ucsc.edu 37 20 15412103 15412103 + Intron SNP A A T novel unknown TCGA-B0-5075-01A-01D-1462-08 TCGA-B0-5075-11A-01D-1462-08 A A A T A A Unknown Valid Somatic . . PGM . . Illumina MACROD2 140733 ucsc.edu 37 20 15948281 15948281 + Intron SNP T T C novel unknown TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T T C T T Unknown Valid Somatic . . PGM . . Illumina VHL 7428 ucsc.edu 37 3 10188190 10188196 + Splice_Site DEL CCCGATA CCCGATA - novel unknown TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CCCGATA CCCGATA CCCGATA - CCCGATA CCCGATA Unknown Valid Somatic . . PGM . . Illumina VHL 7428 ucsc.edu 37 3 10188197 10188197 + Splice_Site SNP G G C novel unknown TCGA-B0-4828-01A-01D-1361-10 TCGA-B0-4828-11A-01D-1361-10 G G G C G G Unknown Valid Somatic . . PGM . . SOLID SETD2 29072 ucsc.edu 37 3 47058655 47058661 + Frame_Shift_Del DEL CTTGGTT CTTGGTT - novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 CTTGGTT CTTGGTT CTTGGTT - CTTGGTT CTTGGTT Unknown Valid Somatic . . PGM . . SOLID SETD2 29072 ucsc.edu 37 3 47059132 47059132 + Missense_Mutation SNP C C G novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 C C C G C C Unknown Valid Somatic . . PGM . . SOLID SETD2 29072 ucsc.edu 37 3 47125222 47125222 + Missense_Mutation SNP C C A novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 C C C A C C Unknown Valid Somatic . . PGM . . SOLID SETD2 29072 ucsc.edu 37 3 47125288 47125288 + Missense_Mutation SNP C C G novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C C G C C Unknown Valid Somatic . . PGM . . Illumina SETD2 29072 ucsc.edu 37 3 47125289 47125289 + Missense_Mutation SNP C C T novel unknown TCGA-B8-4620-01A-02D-1386-10 TCGA-B8-4620-10A-01D-1251-10 C C C T C C Unknown Valid Somatic . . PGM . . Illumina SETD2 29072 ucsc.edu 37 3 47163824 47163824 + Missense_Mutation SNP C C G rs9311404 bycluster;byfrequency;by1000genomes TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C C G C C Unknown Valid Somatic . . PGM . . SOLID SETD2 29072 ucsc.edu 37 3 47164928 47164928 + Nonsense_Mutation SNP G G A novel unknown TCGA-CJ-4872-01A-01D-1373-10 TCGA-CJ-4872-11A-01D-1373-10 G G G A G G Unknown Valid Somatic . . PGM . . SOLID BAP1 8314 ucsc.edu 37 3 52436362 52436362 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-5699-01A-11D-1534-10 TCGA-B0-5699-11A-01D-1534-10 T T T - T T Unknown Valid Somatic . . PGM . . Illumina BAP1 8314 ucsc.edu 37 3 52438499 52438499 + Frame_Shift_Del DEL T T - novel unknown TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T T - T T Unknown Valid Somatic . . PGM . . Illumina BAP1 8314 ucsc.edu 37 3 52439312 52439312 + Splice_Site SNP T T C rs112194987 unknown TCGA-BP-4798-01A-01D-1373-10 TCGA-BP-4798-11A-01D-1373-10 T T T C T T Unknown Valid Somatic . . PGM . . SOLID BAP1 8314 ucsc.edu 37 3 52443728 52443728 + Splice_Site SNP A A C novel unknown TCGA-B0-4703-01A-01D-1361-10 TCGA-B0-4703-11A-01D-1361-10 A A A C A A Unknown Valid Somatic . . PGM . . SOLID BAP1 8314 ucsc.edu 37 3 52443729 52443729 + Splice_Site SNP C C G novel unknown TCGA-B0-4713-01A-01D-1361-10 TCGA-B0-4713-11A-01D-1361-10 C C C G C C Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52598101 52598102 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-B0-4822-01A-01D-1361-10 TCGA-B0-4822-11A-01D-1361-10 AG AG AG - AG AG Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52613194 52613194 + Nonsense_Mutation SNP C C A novel unknown TCGA-CJ-4888-01A-01D-1373-10 TCGA-CJ-4888-11A-01D-1373-10 C C C A C C Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52620685 52620685 + Missense_Mutation SNP G G A novel unknown TCGA-CZ-4854-01A-01D-1373-10 TCGA-CZ-4854-11A-01D-1373-10 G G G A G G Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52643806 52643806 + Frame_Shift_Del DEL T T - novel unknown TCGA-B0-4718-01A-01D-1361-10 TCGA-B0-4718-11A-01D-1361-10 T T T - T T Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52649466 52649467 + Frame_Shift_Del DEL TA TA - novel unknown TCGA-BP-4158-01A-02D-1366-10 TCGA-BP-4158-11A-01D-1366-10 TA TA TA - TA TA Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52651454 52651454 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4759-01A-01D-1366-10 TCGA-BP-4759-11A-01D-1366-10 C C C - C C Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52661376 52661387 + Frame_Shift_Del DEL TTCTTCTTTGCC TTCTTCTTTGCC - novel unknown TCGA-B0-4845-01A-01D-1361-10 TCGA-B0-4845-11A-01D-1361-10 TTCTTCTTTGCC TTCTTCTTTGCC TTCTTCTTTGCC - TTCTTCTTTGCC TTCTTCTTTGCC Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52676048 52676048 + Frame_Shift_Del DEL C C - novel unknown TCGA-AK-3425-01A-02D-1361-10 TCGA-AK-3425-10A-01D-1361-10 C C C - C C Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52682360 52682362 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-BP-4803-01A-01D-1373-10 TCGA-BP-4803-11A-01D-1373-10 CTT CTT CTT - CTT CTT Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52682363 52682363 + Frame_Shift_Del DEL G G - novel unknown TCGA-BP-4159-01A-02D-1366-10 TCGA-BP-4159-11A-01D-1366-10 G G G - G G Unknown Valid Somatic . . PGM . . SOLID PBRM1 55193 ucsc.edu 37 3 52702574 52702574 + Frame_Shift_Del DEL A A - novel unknown TCGA-AK-3431-01A-02D-1361-10 TCGA-AK-3431-10A-01D-1361-10 A A A - A A Unknown Valid Somatic . . PGM . . SOLID DST 667 ucsc.edu 37 6 56394436 56394436 + Missense_Mutation SNP T T C novel unknown TCGA-B0-4848-01A-01D-1361-10 TCGA-B0-4848-11A-01D-1361-10 T T T C T T Unknown Valid Somatic . . PGM . . SOLID AIM1 202 ucsc.edu 37 6 106960877 106960877 + Missense_Mutation SNP G G T novel unknown TCGA-BP-5169-01A-01D-1429-08 TCGA-BP-5169-11A-01D-1429-08 G G G T G G Unknown Valid Somatic . . 454 . . Illumina ZNF800 168850 ucsc.edu 37 7 127031545 127031545 + Intron SNP G G T novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G T G G Unknown Valid Somatic . . PGM . . Illumina ZNF800 168850 ucsc.edu 37 7 127031546 127031546 + Intron SNP T T A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T T A T T Unknown Valid Somatic . . PGM . . Illumina TCEB1 6921 ucsc.edu 37 8 74858968 74858968 + Missense_Mutation SNP T T G novel unknown TCGA-CJ-4889-01A-01D-1373-10 TCGA-CJ-4889-11A-01D-1373-10 T T T G T T Unknown Valid Somatic . . PGM . . SOLID TCEB1 6921 ucsc.edu 37 8 74858969 74858969 + Missense_Mutation SNP A A T novel unknown TCGA-CZ-4862-01A-01D-1373-10 TCGA-CZ-4862-11A-01D-1373-10 A A A T A A Unknown Valid Somatic . . PGM . . SOLID KDM5C 8242 ucsc.edu 37 X 53222653 53222656 + Frame_Shift_Del DEL GGCT GGCT - novel unknown TCGA-B0-4837-01A-01D-1373-10 TCGA-B0-4837-11A-01D-1373-10 GGCT GGCT GGCT - GGCT GGCT Unknown Valid Somatic . . PGM . . SOLID KDM5C 8242 ucsc.edu 37 X 53222684 53222694 + Frame_Shift_Del DEL TGTGGTTCTCA TGTGGTTCTCA - novel unknown TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TGTGGTTCTCA TGTGGTTCTCA TGTGGTTCTCA - TGTGGTTCTCA TGTGGTTCTCA Unknown Valid Somatic . . PGM . . Illumina KDM5C 8242 ucsc.edu 37 X 53224160 53224160 + Frame_Shift_Del DEL C C - novel unknown TCGA-BP-4351-01A-01D-1366-10 TCGA-BP-4351-11A-01D-1366-10 C C C - C C Unknown Valid Somatic . . PGM . . SOLID KDM5C 8242 ucsc.edu 37 X 53240028 53240031 + Frame_Shift_Del DEL GGTA GGTA - novel unknown TCGA-B0-4694-01A-01D-1361-10 TCGA-B0-4694-11A-01D-1361-10 GGTA GGTA GGTA - GGTA GGTA Unknown Valid Somatic . . PGM . . SOLID KDM5C 8242 ucsc.edu 37 X 53247143 53247143 + Silent SNP C C G novel unknown TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C C G C C Unknown Valid Somatic . . PGM . . Illumina KDM5C 8242 ucsc.edu 37 X 53250081 53250082 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 AA AA AA - AA AA Unknown Valid Somatic . . PGM . . SOLID PTEN 5728 ucsc.edu 37 10 89685305 89685306 + Frame_Shift_Ins INS - - A novel unknown TCGA-B0-4843-01A-01D-1361-10 TCGA-B0-4843-11A-01D-1361-10 - - - A - - Unknown Valid Somatic . . PGM . . SOLID TRNAR-ACG 100126522 hgsc.bcm.edu;ucsc.edu 37 3 45730555 45730555 + RNA SNP C C T novel unknown TCGA-CJ-4873-01A-01D-1373-10 TCGA-CJ-4873-11A-01D-1373-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID TRY6 0 hgsc.bcm.edu 37 7 142481269 142481269 + 5'UTR SNP A A T novel unknown TCGA-CZ-4857-01A-01D-1373-10 TCGA-CZ-4857-11A-01D-1373-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID KRTAP20-2 337976 broad.mit.edu;ucsc.edu 37 21 32007632 32007632 + Missense_Mutation SNP T G G rs8132721 bycluster;by2hit2allele TCGA-B8-4620-01A-01D-1553-08 TCGA-B8-4620-11A-01D-1553-08 T T . . . . Unknown Unknown Somatic Phase_I Capture . Illumina GAIIx VHL 7428 hgsc.bcm.edu 37 3 10183833 10183833 + Missense_Mutation SNP T T C novel unknown TCGA-BP-5004-01A-01D-1462-08 TCGA-BP-5004-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture PGM . . Illumina VHL 7428 hgsc.bcm.edu 37 3 10183863 10183863 + Missense_Mutation SNP G G A novel unknown TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM . . Illumina VHL 7428 hgsc.bcm.edu 37 3 10183859 10183859 + Missense_Mutation SNP C C T rs17855706 unknown TCGA-CJ-6031-01A-11D-1669-08 TCGA-CJ-6031-11A-01D-1669-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina VHL 7428 hgsc.bcm.edu 37 3 10183840 10183844 + Frame_Shift_Del DEL TGGCA TGGCA - novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 TGGCA TGGCA TGGCA - TGGCA TGGCA Unknown Valid Somatic Phase_I Capture PGM . . Illumina HMCN1 83872 broad.mit.edu 37 1 185964002 185964002 + Missense_Mutation SNP A T T novel unknown TCGA-A3-3387-01A-01D-1534-10 TCGA-A3-3387-11A-01D-1534-10 A A A T A A Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx STAG2 10735 broad.mit.edu 37 X 123191777 123191777 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx TXNIP 10628 broad.mit.edu 37 1 145440928 145440928 + Missense_Mutation SNP C G G novel unknown TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx ZNF800 168850 broad.mit.edu 37 7 127014261 127014261 + Missense_Mutation SNP G A A novel unknown TCGA-A3-3323-01A-01D-0966-08 TCGA-A3-3323-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx SPEN 23013 broad.mit.edu 37 1 16257104 16257104 + Missense_Mutation SNP T G G novel unknown TCGA-A3-3376-01A-02D-1421-08 TCGA-A3-3376-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx CDC27 996 broad.mit.edu 37 17 45234696 45234696 + Missense_Mutation SNP C A A novel unknown TCGA-A3-3382-01A-01D-0966-08 TCGA-A3-3382-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx TECTA 7007 broad.mit.edu 37 11 121016494 121016494 + Silent SNP G T T novel unknown TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx PIK3CA 5290 broad.mit.edu 37 3 178952077 178952077 + Missense_Mutation SNP T A A novel unknown TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T T A T T Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx PTEN 5728 broad.mit.edu 37 10 89725042 89725042 + Splice_Site SNP A G G novel unknown TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx SPRED1 161742 broad.mit.edu 37 15 38632097 38632097 + Splice_Site SNP G T T novel unknown TCGA-BP-4162-01A-02D-1386-10 TCGA-BP-4162-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx PPIL4 85313 broad.mit.edu 37 6 149855820 149855820 + Silent SNP T C C novel unknown TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx MLL3 58508 broad.mit.edu 37 7 151970836 151970836 + Silent SNP G A A novel unknown TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx LRRC7 57554 broad.mit.edu 37 1 70502282 70502282 + Missense_Mutation SNP G C C novel unknown TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx TMPRSS13 84000 broad.mit.edu 37 11 117785150 117785150 + Silent SNP G A A novel unknown TCGA-B2-4101-01A-02D-1458-08 TCGA-B2-4101-11A-01D-1458-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx LYST 1130 broad.mit.edu 37 1 235907322 235907322 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx SPRED1 161742 broad.mit.edu 37 15 38591664 38591664 + Silent SNP C T T novel unknown TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx MLL3 58508 broad.mit.edu 37 7 151962234 151962234 + Missense_Mutation SNP A C C novel unknown TCGA-BP-4976-01A-01D-1462-08 TCGA-BP-4976-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx BAI3 577 broad.mit.edu 37 6 69349081 69349081 + Missense_Mutation SNP T C C novel unknown TCGA-BP-4988-01A-01D-1462-08 TCGA-BP-4988-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx MTOR 2475 broad.mit.edu 37 1 11217230 11217230 + Missense_Mutation SNP C A A novel unknown TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx MYST4 0 broad.mit.edu 37 10 76789332 76789332 + Missense_Mutation SNP A T T novel unknown TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx DST 667 broad.mit.edu 37 6 56373344 56373344 + Missense_Mutation SNP G C C novel unknown TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx CDH23 64072 broad.mit.edu 37 10 73499530 73499530 + Splice_Site SNP G T T novel unknown TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx PTEN 5728 broad.mit.edu 37 10 89720741 89720741 + Nonsense_Mutation SNP C T T novel unknown TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx FGFR2 2263 broad.mit.edu 37 10 123353298 123353298 + Missense_Mutation SNP C T T rs143978938 by1000genomes TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx SECISBP2L 9728 broad.mit.edu 37 15 49301547 49301547 + Silent SNP A C C novel unknown TCGA-CJ-4636-01A-02D-1386-10 TCGA-CJ-4636-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx MTOR 2475 broad.mit.edu 37 1 11188100 11188100 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx TP53 7157 broad.mit.edu 37 17 7577565 7577565 + Missense_Mutation SNP T C C novel unknown TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx STK31 56164 broad.mit.edu 37 7 23827688 23827688 + Silent SNP T C C novel unknown TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T T C T T Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx TTN 7273 broad.mit.edu 37 2 179480458 179480458 + Missense_Mutation SNP C G G novel unknown TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx GUCY2F 2986 broad.mit.edu 37 X 108631719 108631719 + Silent SNP T A A novel unknown TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx MTOR 2475 broad.mit.edu 37 1 11217230 11217230 + Missense_Mutation SNP C A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx EPHA8 2046 broad.mit.edu 37 1 22902868 22902868 + Silent SNP C T T novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx CSMD1 64478 broad.mit.edu 37 8 3216686 3216686 + Missense_Mutation SNP G A A novel unknown TCGA-CJ-4907-01A-01D-1429-08 TCGA-CJ-4907-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx MSR1 4481 broad.mit.edu 37 8 16026114 16026114 + Silent SNP G T T novel unknown TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture PGM . . Illumina GAIIx CLSTN2 64084 broad.mit.edu 37 3 140122558 140122558 + Missense_Mutation SNP G A A rs145666342 unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx HEPH 9843 broad.mit.edu 37 X 65474914 65474914 + Missense_Mutation SNP G T T rs146719428 unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx EPHA6 285220 broad.mit.edu 37 3 96706398 96706398 + Silent SNP A G G novel unknown TCGA-CZ-4856-01A-02D-1429-08 TCGA-CZ-4856-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx TTN 7273 broad.mit.edu 37 2 179434729 179434729 + Missense_Mutation SNP A C C novel unknown TCGA-CZ-4859-01A-02D-1429-08 TCGA-CZ-4859-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I Capture 454 . . Illumina GAIIx