PileUp GDC ******** GeneDoc Multiple Sequence Alignment Editor ******** GDC 040000074702bc000cffffffffffff000000000000000000808080c0c0c0 GDC ffffff000000000000f43f000000000000f43f000000000000f03f000000 GDC 000000f03f00A000300000190000cA54696d6573204e657720526f6d616e GDC 00B0096000d00000000000047656e65446f63000000000028484b5f31303 GDC 92c0d0a48315f322c0d0a48395f31322c0d0a4d524369505332305f31302 GDC c0d0a3231303245505f382c0d0a3231303245505f31302c0d0a323130324 GDC 5505f31322c0d0a3231303245505f31332c0d0a3231303245505f31342c0 GDC d0a3231303245505f37293b0d0a00ABAADAAA0000002a000a00020001B20 GDC BAA000a203a2000203a200000000000000059400000000000000000000c5 GDC 058000000ffff000047580000ff00ff000041475358000000ffffff00564 GDC 34147444e535450580000ff00ffff00484b525800ff00000000ff4659574 GDC 858000000ff8080804544580000ff000000ff484b5245445800ffffff000 GDC 0ff48524551444e425a5800ff000000ff005957484b524551444e5354425 GDC a580000000000ff00494c56415800ff0000808080494c564341474d46595 GDC 74854505800ffffff0000000c50580000000000000047580000000000000 GDC 0414347535800000000000000564147444e5354505800000000000000484 GDC b52580000000000000046595748580000000000000045445800000000000 GDC 000484b524544580000000000000048524551444e425a580000000000000 GDC 0435957484b524551444e5354425a5800000000000000494c56415800000 GDC 000000000494c564341474d46595748545058000000000000000300fffff GDC f00000000ffffff80808000000000c0c0c00000ABBBBBBBBBBBBBB00ff00 GDC A000a0001000100010001000100010001000100010001A0018AA00000000 GDC 0000000000000003A00ff00A000000000080564000000000008051400000 GDC 0000000049400000020000000000001440A0000000098b20c41000000001 GDC 025064100000000189806410000000078b10b4100AAABB00005374616e64 GDC 6172640046464c4c5353535359592a2a43432a574c4c4c4c505050504848 GDC 5151525252524949494d545454544e4e4b4b535352525656565641414141 GDC 4444454547474747002d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d GDC 2d2d2d2d2d2d2d2d2d2d2d2d2d2d4d2d2d2d2d2d2d2d2d2d2d2d2d2d2d2d GDC 2d2d2d2d2d2d2d2d2d2d2d2d2d00BBBBB000000000000000a00000000000 GDC 000000000000000000000000000000003000000000000BBAB000a0000000 GDC 00000000000000500000117B000000000000594000000000000054400000 GDC 000000004e4007DBAB000000ffffff03020141470000ff00ff0000024354 GDC 5500ff000000ff00020147430000ff00ff00000241545500ff000000ff00 GDC 05014100000000ff000002430000000000ff00035455000000000000ff04 GDC 4700000000ffff00054e5800ffffff0000000000000000Affffff8080800 GDC 0A HK_109.msf MSF: 678 Type: N August 19, 2013 16:15 Check: 2432 .. Name: HK_109 Len: 678 Check: 8844 Weight: 1.00 Name: H1_2 Len: 678 Check: 6219 Weight: 0.00 Name: H9_12 Len: 678 Check: 8844 Weight: 0.00 Name: MRCiPS20_10 Len: 678 Check: 7704 Weight: 0.00 Name: 2102EP_8 Len: 678 Check: 8916 Weight: 1.00 Name: 2102EP_10 Len: 678 Check: 8591 Weight: 1.00 Name: 2102EP_12 Len: 678 Check: 8898 Weight: 1.00 Name: 2102EP_13 Len: 678 Check: 9009 Weight: 1.00 Name: 2102EP_14 Len: 678 Check: 6889 Weight: 1.00 Name: 2102EP_7 Len: 678 Check: 8518 Weight: 1.00 // 1 50 HK_109 gcagccctat ttcttcggac ctgttcttgt accccatcaa tccaccaagt H1_2 GCAGCCCTAT TTCTTCGGAC CTGTTCTTGT ACCCCATCAA TCCACCAAGT H9_12 GCAGCCCTAT TTCTTCGGAC CTGTTCTTGT ACCCCATCAA TCCACCAAGT MRCiPS20_10 GCAGCCCTAT TTCTTCGGAC CTGTTCTTGT ACCCCATCAA TCCACCAAGT 2102EP_8 gcagccctat ttcttcggac ctgttcttgt accccatcaa tccaccaagt 2102EP_10 gcagccctat ttcttcggac ctgttcttgt accccatcaa tctaccaagt 2102EP_12 gcagccctat ttcttcggac ctgttcttgt accccatcaa tccaccaagt 2102EP_13 gcagccctat ttcttcggac ctgttcttgt accccatcaa tccaccaagt 2102EP_14 gcagccctat ttcttcggac ctgttcttgt accccatcaa tccaccaagt 2102EP_7 gcagccctat ttcttcggac ctgttcttgt accccatcaa tccaccaagt 51 100 HK_109 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct H1_2 CTTAAATTGT AAAAATTGAG AGGGTGAGAG AGACGATTTT GCCAGAATCT H9_12 CTTAAATTGT AAAAATTGAG AGGGTGAGAG AGACGATTTT GCCAGAATCT MRCiPS20_10 CTTAAATTGT AAAAATTGAG AGGGTGAGAG AGACGATTTT GCCAGAATCT 2102EP_8 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct 2102EP_10 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct 2102EP_12 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct 2102EP_13 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct 2102EP_14 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct 2102EP_7 cttaaattgt aaaaattgag agggtgagag agacgatttt gccagaatct 101 150 HK_109 cccaatcata aggaatgagt ctatgtccat gagcaatgga atctaataat H1_2 CCCAATCATA AGGAATGAGT CTATGTCCAT GAGCAATGGA ATCTAATAAT H9_12 CCCAATCATA AGGAATGAGT CTATGTCCAT GAGCAATGGA ATCTAATAAT MRCiPS20_10 CCCAATCATA AGGAATGAGT CTATGTCCAT GAGCAATGGA ATCTAATAAT 2102EP_8 cccaatcata aggaatgagt ctatgtccat gagcaatgga atctaataat 2102EP_10 cccaatcata aggaatgagt ctatgtccat gagcaatgga atctaataat 2102EP_12 cccaatcata aggaatgagt ctgtgtccat gagcaatgga atctaataat 2102EP_13 cccaatcata aggaatgagt ctatgtccat gagcaatggg atctaataat 2102EP_14 cccaatcata aggaatgagt ctatgtccat gagcaatgga atctaataat 2102EP_7 ccaaatcata aggaatgagt ctatgtccat gagcaatgga atctaataat 151 200 HK_109 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat H1_2 GTCCTCATAT AAGGGGAGTT GGGTCCATAC TGTTTTACTC CCTCTTTCAT H9_12 GTCCTCATAT AAGGGGAGTT GGGTCCATAC TGTTTTACTC CCTCTTTCAT MRCiPS20_10 GTCCTCATAT AAGGGGAGTT GGGTCCATAC TGTTTTACTC CCTCTTTCAT 2102EP_8 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat 2102EP_10 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat 2102EP_12 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat 2102EP_13 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat 2102EP_14 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat 2102EP_7 gtcctcatat aaggggagtt gggtccatac tgttttactc cctctttcat 201 250 HK_109 atcttttagt atttttatcg aaaaagactt gtatctggcc tcaactgtgg H1_2 ATCTTTTAGT ATTTTTATCG AAAAAGACTT GTATCTGGCC TCAACTGTGG H9_12 ATCTTTTAGT ATTTTTATCG AAAAAGACTT GTATCTGGCC TCAACTGTGG MRCiPS20_10 ATCTTTTAGT ATTTTTATCG AAAAAGACTT GTATCTGGCC TCAACTGTGG 2102EP_8 atcttttagt atttttatcg aaaaagactt gtatctggcc tcaactgtgg 2102EP_10 atcttttagt atttttatcg aaaaagactt gtatctggcc tcaactgtgg 2102EP_12 atcttttagt atttttatcg aaaaagactt gtatctggcc tcaactgtgg 2102EP_13 atcttttagt atttttatcg aaaaagactt gtatctggcc tcaactgtgg 2102EP_14 atcttttagc atttttatcg aaaaagactt gtatctggcc tcaactgtgg 2102EP_7 atcttttagt atttttatcg aaaaagactt gtatctggcc tcaactgtgg 251 300 HK_109 gaggctctcc ctcttgggct ccttctccag gtggcatcgg ttctaacgtt H1_2 GAGGCTCTCC CTCTTGGGCT CCTTCTCCAG GTGGCATCGG TTCTAACGTT H9_12 GAGGCTCTCC CTCTTGGGCT CCTTCTCCAG GTGGCATCGG TTCTAACGTT MRCiPS20_10 GAGGCTCTCC CTCTTGGGCT CCTTCTCCAG GTGGCATCGG TTCTAACGTT 2102EP_8 gaggctctcc ctcttgggct ccttctccag gtggcatcgg ttctaacgtt 2102EP_10 gaggctctcc ctcttgggct ccttccccag gtggcatcgg ttctaacgtt 2102EP_12 gaggctctcc ctcttgggct ccttctccag gtggcatcgg ttctaacgtt 2102EP_13 gaggctctcc ctcttgggct ccttctccag gtggcatcgg ttctaacgtt 2102EP_14 gaggctctcc ctcttgggct ccttctccag gtggcatcgg ttctaacgtt 2102EP_7 gaggctctcc ctcttgggct ccttctccag gtggcatcgg ttctaacgtt 301 350 HK_109 actgggaatt gccatgcctc agtatctcct tcctttcttg atttatcaat H1_2 ACTGGGAATT GCCATGCCTC AGTATCTCCT TCCTTTCTTG ATTTATCAAT H9_12 ACTGGGAATT GCCATGCCTC AGTATCTCCT TCCTTTCTTG ATTTATCAAT MRCiPS20_10 ACTGGGAATT GCCATGCCTC AGTATCTCCT TCCTTTCTTG ATTTATCAAT 2102EP_8 actgggaatt gccatgcctc agtatctcct tcctttcttg atttatcaat 2102EP_10 actgggaatt gccatgcctc agtatctcct tcctttcttg atttatcaat 2102EP_12 actgggaatt gccatgcctc agtatctcct tcctttcttg atttatcaat 2102EP_13 actgggaatt gccatgcctc agtatctcct tcctttcttg atttatcaat 2102EP_14 actgggaatt gccatgcctc agtatctcct tcctttcttg atttatcaat 2102EP_7 actaagaatt gccatgcctc agtatctcct tcctttcttg atttatcaat 351 400 HK_109 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa H1_2 AATTTCATGT AATTCACTAC CCTGTCTACT AGGTGGTGCC GTA..ATTAA H9_12 AATTTCATGT AATTCACTAC CCTGTCTACT AGGTGGTGCC GTAGGATTAA MRCiPS20_10 AATTTCATGT AATTCACTAC CCTGTCTACT AGGTGGTGCC GTAGGATTAA 2102EP_8 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa 2102EP_10 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa 2102EP_12 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa 2102EP_13 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa 2102EP_14 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa 2102EP_7 aatttcatgt aattcactac cctgtctact aggtggtgcc gtaggattaa 401 450 HK_109 gtctcctagt gggcggctga gggtatggcg ccctgccctg tggtgctggg H1_2 GTCTCCTAGT GGGCGGCTGA GGGTATGGCG CCCTGCCCTG TGGTGCTGGG H9_12 GTCTCCTAGT GGGCGGCTGA GGGTATGGCG CCCTGCCCTG TGGTGCTGGG MRCiPS20_10 GTCTCCTAGT GGGCGGCTGA GGGTATGGCG CCCTGCCCTG TGGTGCTGGG 2102EP_8 gtctcctagt gggcggctga gggtatggcg ccctgccctg tggtgctggg 2102EP_10 gtctcctagt gggcggctga gggtatggcg ccctgccctg tggtgctggg 2102EP_12 gtctcctagt gggcggctga gggtatggcg ccctgccctg tggtgctggg 2102EP_13 gtctcctagt gggcggctga gggtatggcg ccctgccctg tggtgctggg 2102EP_14 gtctcctagt gggcggccga gggtatggcg ccctgccctg tggtgctggg 2102EP_7 gtctcctagt gggcggctga gggtatggcg ccctgccctg tggtgctggg 451 500 HK_109 ggcattcctg gatatccata ctgactttct gggggtggcc gatactgaag H1_2 GGCATTCCTG GATATCCATA CTGACTTTCT GGGGGTGGCC GATACTGAAG H9_12 GGCATTCCTG GATATCCATA CTGACTTTCT GGGGGTGGCC GATACTGAAG MRCiPS20_10 GGCATTCCTG GATATCCATA CTGACTTTCT GGGGG.GGCC GATACTGAAG 2102EP_8 ggcattcctg gatatccata ctgactttct gggggtggcc gatactgaag 2102EP_10 ggcattcctg gatatccata ctgactttct gggggtggcc gatactgaag 2102EP_12 ggcattcctg gatatccata ctgactttct gggggtggcc gatactgaag 2102EP_13 ggcattcctg gatatccata ctgactttct gggggtggcc gatactgaag 2102EP_14 ggcatccctg gatatccata ctgactttct gggggtggcc gatactgaag 2102EP_7 ggcattcctg gatatccata ctgactttct gggggtggcc gatactgaag 501 550 HK_109 ttcagccgga ggccagtatt gataggctac tggcggttgg gtcttatttt H1_2 TTCAGCCGGA GGCCAGTATT GATAGGCTAC TGGCGGTTGG GTCTTATTTT H9_12 TTCAGCCGGA GGCCAGTATT GATAGGCTAC TGGCGGTTGG GTCTTATTTT MRCiPS20_10 TTCAGCCGGA GGCCAGTATT GATAGGCTAC TGGCGGTTGG GTCTTATTTT 2102EP_8 ttcagccgga ggccagtatt gataggctac tggcggttgg gtcttatttt 2102EP_10 ttcagccgga ggccagtatt gataggctac tggcggttgg gtcttatttt 2102EP_12 ttcagccgga ggccagtatt gataggctac tggcggttgg gtcttatttt 2102EP_13 ttcagccagc ggccagtatt gataggctac ttgcggttgg gtcttatttt 2102EP_14 ttcagccgga ggccagtatt gataggctac tggcggttgg gtcttatttt 2102EP_7 ttcagccgga ggccagtatt gataggctac tggcggttgg gtcttatttt 551 600 HK_109 ctttaacctg cttttgaggt tgtaatgtta caggcacctg acctgctgga H1_2 CTTTAACCTG CTTTTGAGGT TGTAATGTTA CAGGCACCTG ACCTGCTGGA H9_12 CTTTAACCTG CTTTTGAGGT TGTAATGTTA CAGGCACCTG ACCTGCTGGA MRCiPS20_10 CTTTAACCTG CTTTTGAGGT TGTAATGTTA CAGGCACCTG ACCTGCTGGA 2102EP_8 ctttaacctg cttttgaggt tgtaatgtta cgggcacctg acctgctgga 2102EP_10 ctttaacctg cttttgaggt tgtaatgtta caggcacctg acctgctgga 2102EP_12 ctttaacctg cttttgaggt tgtaatgtta caggcacctg acctgctgga 2102EP_13 ctttaacctg cttttgaggt tgtaatctta cgagcacctg acctgctgga 2102EP_14 ctttaacctg cttttgaggt tgtaatgtta caggcacctg acctgctgga 2102EP_7 ctttaacctg cttttgaggt tgtaatgtta caggcacctg acctgctgga 601 650 HK_109 agaggacttg tgcctcgtgg tttagactct gatggcc... .......... H1_2 AGAGGACTTG TGCCTCGTGG TTTAGACTCT GATGGCC... .......... H9_12 AGAGGACTTG TGCCTCGTGG TTTAGACTCT GATGGCC... .......... MRCiPS20_10 AGAGGACTTG TGCCTCGTGG TTTAGACTCT GATGGCC... .......... 2102EP_8 agaggacttg tgcctcgtgg tttagactct gatggcc... .......... 2102EP_10 agaggacttg tccctcgtgg tttagactct gatggcc... .......... 2102EP_12 agaggacttg tgcctcgtgg tttagactct gatggcc... .......... 2102EP_13 agaggacttg tgcctcgtgg tttagactct gatggcc... .......... 2102EP_14 agaggacttg tgcctcgtgg tttagactct gatggcc... .......... 2102EP_7 agaggacttg tgcctcgtgg tttagactct gatggcc... .......... 651 678 HK_109 .......... .......... ........ H1_2 .......... .......... ........ H9_12 .......... .......... ........ MRCiPS20_10 .......... .......... ........ 2102EP_8 .......... .......... ........ 2102EP_10 .......... .......... ........ 2102EP_12 .......... .......... ........ 2102EP_13 .......... .......... ........ 2102EP_14 .......... .......... ........ 2102EP_7 .......... .......... ........