Table 3. Detection and subtraction of contaminating bacteria
|
Species |
No. of clones detected in controls |
No. of clones subtracted from sequenced specimens |
Total |
||||
|
Primer pair 1 |
Primer pair 2 |
A |
B |
C |
D |
||
|
Pseudomonas tolaasii |
22 |
29 |
30 |
43 |
3 |
5 |
132 |
|
Janthinobacterium lividum |
0 |
9 |
8 |
21 |
2 |
1 |
41 |
|
Uncultured Duganella clone CTHB-18 |
3 |
0 |
11 |
0 |
0 |
0 |
14 |
|
Pseudomonas influorensces |
0 |
2 |
5 |
2 |
0 |
0 |
9 |
|
Stenotrophomonas maltophilia |
1 |
3 |
2 |
0 |
0 |
0 |
6 |
|
Pseudomonas antarctica/meridiana |
1 |
3 |
4 |
0 |
0 |
1 |
9 |
|
Pseudomonas putida |
0 |
1 |
3 |
0 |
0 |
0 |
4 |
|
Pseudomonas syringae |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
|
Lactobacillus paracasei |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
|
Propionibacterium acnes |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
|
Brevundimonas bulata |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
|
Total |
28 |
50 |
63 |
66 |
5 |
7 |
219 |