Supplemental Data. Ishizaki et al. (2013). Plant Cell 10.1105/tpc.113.117051.

Supplemental Data Set 1.  Alignment of the U-box domains of NOP1 and 41 Arabidopsis PUB-ARM Proteins Used for the Phylogenetic Analysis Shown in Supplemental Figure 3.

[PHYLIP format]

43 73

Sc_PRP19
-MLCAISGKV PRRPVLSPKS RTIFEKSLLE QYV---KDTG ND---PITNE PLSIEEIVEI VPSAQQASLT EST
At_PUB40
EF..P...SL MAD.IIVSSG HS-Y.RACVI ACK----TL. FTPTP.PD-- ----F--STV I.NLALK.AI H.W
At_PUB38
EF..P..KS. MSD..VVSSG Q.-..RVCVQ VCR----.LN FIPKLNDDE. S.PDF--SN. I.NLNMK.TI DTW
At_PUB39
EF..P.T.FL MSD..VVASG Q.-..RISVQ VCR----NLS FAPKLHDGTQ .DL----STV I.NLAMK.TI L.W
At_PUB41
EF..P.T.FL MSD..VVSSG Q.-..RLSVQ VCR----NL. YIPDLLDGTR .DL----STV I.NLAMK.TI F.W
At_PUB42
AFI.PLTKEI MED..TTETG V.-C.RQAVI EWFDSFGNSD EI-NC.V.GQ K.T----T.L SANVVLKTII QEW
NOP1
AFV.PLTKN. MVD..TLENG Q.-Y.R.AI. KWFMVCREEN RPASC.M.GK T.E-S--MTL K..IALRNTI .EW
At_PUB43
AFI.PLTKQ. MHN..TLENG Q.-..REAI. KWFQECREN. QPLSC...SK E..-I--TDL S..IALRNTI .EW
At_PUB44
AFI.PLTKE. MHD..TLENG ..-..REAI. KWFKECR.S. RPPSC.L.SQ E.T-S--TDV SA.IALRNTI .EW
At_PUB5
KFK.TL.RT. MYD..IISSG N.-..RMQIQ KWF----.E. ..-SC..SKR K.D-D--FTL K.NVELK.QI SEW
At_PUB48
EFK.TL.KTI MID..IIFSG Q.-Y..RYIT EWL----NHD L--TC.TAKQ V.Y-R--.CL T.NHLINE.I TRW
At_PUB46
EFI.TL.NTI MIE..IIASG Q.-Y..RYIT EWL----KHE R--TC.K.KQ V..-H--RLW I.NHLISD.I TQW
At_PUB47
EFI.TL.N.I MIE.M.IASG Q.-....YIL EWL----KHE R--TC.R.KQ V.Y-H--RFM I.NHLINEVI KEW
At_PUB18
DL..P..LEI MTD..VIETG H.-YDR.SIT KWF----GS. .I-TC...GK I.T-S--T.L .DNVSVRQVI RKH
At_PUB19
DLR.P..LEI MSD..VLESG H.-YDR.SIT KWF----AS. .I-TC.K.GK T.V-S--TVL .DNFSVKQVI Q.Y
At_PUB28
FFK.P..LD. MKS..SLSTG V.-YDRVSIQ RWL----.D. .N-TC.A.MQ I.Q-N--K.F ..NLTLHR.I DHW
At_PUB27
FFR.P..LD. MKS..SLCTG V.-YDRASIQ RWL----.G. .N-TC.A.MQ I.Q-N--KDF I.NRTLQR.I .IW
At_PUB29
FFK.P..LD. M.S..SLCTG V.-YDRASIQ RWL----.G. .N-TC.A.MQ L.K-T--KDF ..NLTLQR.I NIW
At_PUB9
EFR.PL.NEL M.D..VLASG Q.-YD.LFIQ KWL----SS. .R-TC.K.QQ V.P-H--TAL T.NLLIREMI SKW
At_PUB8
DFR.P..LEI MSD..ILQSG H.-.DRVSIQ .WI----.S. .R-TC...KL ...ET--PYL I.NHALR..I LNF
At_PUB30
VFI.P..LEP MQD..TLCTG Q.-Y.RLNIH KWF----NL. HL-TC.T.MQ E.W-D--DTV T.NKTLHH.I YTW
At_PUB31
VFI.P..LEP MQD..TLCTG Q.-Y.R.NIL KWF----NI. HC-TC.T.MQ E.W-D--DLV T.NKTLHQ.I YTW
At_PUB25
HFR.P..LEL MQD..TVCTG Q.-YDRASI. SW.----SI. .NTTC.V.RA ...-D--FTL I.NHTLRR.I QEW
At_PUB26
HFR.P..LDL MSD..TISTG Q.-YDRTSID SWI----AM. .T-TC.V.RV A..-D--FTL I.NHTLRR.I QEW
At_PUB20
QFQ.P..YEL MKD..IIASG I.-YDRENI. KWF----ES. YQ-TC.V..T V.T-S--L.Q I.NHTIRRMI QGW
At_PUB21
EFQ.P..IDL MKD..IISTG I.-YDRVSI. TWI----NS. .K-TC.V..T V.T-T--FDQ I.NHTIRKMI QGW
At_PUB24
YFI.P..LEI MKD..TTVSG I.-YDRQNIV KWL------E KVPSC.V.KQ ..PLD--SDL T.NHMLRR.I QHW
At_PUB22
FF..P..LDI MKD..IVSTG I.-YDRESI. KWL----FS. KKNSC.V.KQ VIT-.--TDL T.NHTLRR.I Q.W
At_PUB23
FF..P..LEI MKD..IVSTG I.-YDRDSI. KWL----FA. KKNSC.V.KQ DIT-D--ADL T.NHTLRR.I Q.W
At_PUB3
YFR.PL.TEL MLD..IVASG Q.-.DRTSIK KWL----.N. LA-VC.R.RQ V.T-H--Q.L I.NYTVKAMI A.W
At_PUB2
DFR.SL.LEL MTD..IVASG Q.-..RVFIQ KWI----.M. LM-VC.K.RQ A..-H--TTL T.NFIVRAFL A.W
At_PUB4
DFF.PL.LE. MTD..IVSSG Q.-Y..AFIK RWI----.L. LK-VC.K.RQ T.T-H--TTL I.NYTVKA.I ANW
At_PUB15
EF..P.TLEI MLD..IIATG Q.-Y..ESIQ KWF----.A. HK-TC.K.RQ E.D-H--LSL A.NFALKN.I MQW
At_PUB16
DFR.P.TLEL M.D..VVATG Q.-YDRESID LWI----QS. HN-TC.K.GQ V.K-H--TSL ..NRALKN.I VLW
At_PUB17
DFV.P..LDL MTD..IISTG Q.-YDRNSIA RWI----EE. HC-TC.K.GQ M.M-D--SR. ..NRALKN.I VQW
At_PUB45
ELR.P..LQL MYD..IIASG Q.-Y.RICI. KWF----SD. HN-TC.K.HQ Q..-H--LCL T.NYCVKA.I S.W
At_PUB6
ELR.P..LQL MYD..IIASG Q.-Y.RVCI. KWF----SD. HN-SC.K.QQ Q.P-H--LSL T.NYCVKG.I A.W
At_PUB7
ELR.P..LQL MCD..IIASG Q.-Y.RVCI. KWF----SD. HN-TC.K.QQ Q.P-H--ISL T.NNCVKG.I A.W
At_PUB10
DF..P..LEL MKD.AIVSTG Q.-Y.R.FIQ RWI----.C. .L-SC.K.QQ K.E-N--FTL T.NYVLR..I SQW
At_PUB11
DF..PV.LEL MKD..IVATG Q.-Y.RAYIQ RWI----.C. .L-TC.K.QQ K.E-N--FTL T.NYVLR..I SRW
At_PUB14
YFR.P..LEL MKD..IVSTG Q.-Y.R.SIQ KWL----.A. HK-TC.KSQ. T.L-H--AGL T.NYVLK..I ALW
At_PUB12
EFR.P..LEL MTD..IVSSG Q.-Y.RECIK KWL----EG. HL-TC.K.Q. T.T-S--DIM T.NYVLR..I AQW
At_PUB13
DFR.P..LEM M.D..IVSSG Q.-Y.RTCI. KWI----EG. HS-TC.K.QQ A.T-S--TTL T.NYVLR..I AQW