Nonclinical and Clinical Enterococcus faecium Strains, but Not Enterococcus faecalis Strains, Have Distinct Structural and Functional Genomic Features

Supplemental material

Files in this Data Supplement:

• Supplemental file 1 -

  List of AR and VF genes or loci for Table 3; PCR primers for detection of group-specific genes of E. faecium (Table S1); CDS collection comparison between E. faecium and E. faecalis (Table S2); construction of E. faecium and E. faecalis orthologous CDS collections (Fig. S1); distribution of orthologous CDS in 31 E. faecium and 38 E. faecalis genomes (Fig. S2); phylogenetic analysis of MLST sequences found in different E. faecium strains (Fig. S3); hierarchical clustering of E. faecalis isolates based on orthologous CDS contents (Fig. S4); gene distribution in E. faecium genomes for proximity analysis (Fig. S5); PCR amplification of NC- and CL-enriched genes (Fig. S6); phylogenetic analysis of pbp5 sequences found in different E. faecium strains (Fig. S7).

  PDF, 505K

• Supplemental file 2 -

  Annotations of NC- and CL-specific genes (Table S3).

  XLS, 109K