m/z	z	ppm	Peptide 1	Peptide 2	Fraction	RT	Score	Score Diff	Expect	Sc 1	Exp 1	Rk 1	Sc 2	Exp 2	Rk 2	# XL	MaxExp	Sdiff-logMaxExp	Xlink Type	Acc #	XLink AA 1	Acc #	XLink AA 2	Protein 1 Name	Protein 2 Name
953.47	3	-4.5	NVLHHFNFK(1444.6616)EK+Incorrect Mono 1Da	K(1549.8041)DAQSQEMSQR+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	25.463	85	43.5	9.90E-22	41.5	9.60E-10	1	38.1	8.30E-09	2	4	8.30E-09	51.58	Inter	P25635	96	Q06078	382	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
940.52	4	-1.9	EK(2190.2126)QFLNALVMAFR+Incorrect Mono 2Da	LNEEYLINK(1707.9320)VYEAIPIK+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	56.226	73	39.5	2.00E-18	33.5	3.40E-07	4	33.5	3.40E-07	1	0	3.40E-07	45.97	Intra	P25635	733	P25635	753	Periodic tryptophan protein 2	Periodic tryptophan protein 2
926.168	3	-6.2	FILTTSK(1452.7548)DLSAK	VK(1460.8126)C(Carbamidomethyl)VTFHPATR	UTP_B_3percent_FA_20101118_FTMSms2hcd	32.171	78.2	36.7	9.40E-15	38.2	3.60E-06	4	41.5	7.10E-07	1	2	3.60E-06	42.14	Intra	P25635	166	P25635	264	Periodic tryptophan protein 2	Periodic tryptophan protein 2
1034.52	4	-11	SDFK(2486.2420)FSNLLGTVYR+Incorrect Mono 2Da	VSVFDLINNK(1787.9396)SFTFEYEHR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	49.251	63.5	31.1	1.60E-17	29.3	4.20E-07	6	32.4	4.80E-08	1	0	4.20E-07	37.48	Intra	P25635	6	P25635	46	Periodic tryptophan protein 2	Periodic tryptophan protein 2
958.01	4	-8	QGNITFSDDGK(1680.9535)QLLSPVGNR+Incorrect Mono 2Da	SK(2287.1746)MNTLLHLDVIR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	41.918	64.7	31.7	1.80E-17	33	5.40E-08	1	27.7	2.10E-06	5	0	2.10E-06	37.38	Inter	P25635	27	Q06078	730	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
797.0516	3	-0.41	TPDVNK(1444.6616)DR	K(1081.5404)DAQSQEMSQR	UTP_B_new_column_20101115_FTMSms2hcd	27.278	84.7	30.4	6.40E-15	36.4	1.30E-05	4	54.3	4.60E-09	1	3	1.30E-05	35.29	Inter	P25635	129	Q06078	382	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
715.0938	3	-1.9	IHVLK(1013.5757)NIHR	VGGSTIK(1266.7561)SK	UTP_B_new_column_20101115_FTMSms2hcd	29.915	62.7	29.6	2.10E-12	33.1	4.50E-06	1	33	4.70E-06	2	3	4.70E-06	34.93	Intra	Q06078	288	Q06078	408	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
1026.81	4	-6.3	YIK(2401.3480)LFDEFLDLER+Incorrect Mono 2Da	DLPELYLK(1841.9753)TVMIDITLNIR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	62.09	63.6	29.7	2.10E-14	28.8	2.40E-05	22	33.9	1.10E-06	1	0	2.40E-05	34.32	Intra	Q02354	321	Q02354	361	U3 small nucleolar RNA-associated protein 6	U3 small nucleolar RNA-associated protein 6
892.98	4	-2.4	IWK(2294.2249)LDIENDK+Incorrect Mono 1Da	SIK(1414.7646)ESYSSFILHPFQTIR+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	44.423	64.4	30.2	2.90E-15	23.6	2.50E-04	11	34.2	3.60E-07	2	1	2.50E-04	33.8	Intra	Q12220	230	Q12220	318	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
690.37	5	1.6	IYTVSK(1456.7799)DGAVFVWEFTK+Incorrect Mono 1Da	VK(2131.1180)C(Carbamidomethyl)VTFHPATR+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	46.14	66.6	28.8	1.50E-15	37.8	5.00E-08	2	23.1	3.40E-04	28	0	3.40E-04	32.27	Intra	P25635	211	P25635	264	Periodic tryptophan protein 2	Periodic tryptophan protein 2
942.84	3	-4	SDFK(1178.6597)FSNLLGTVYR+Incorrect Mono 1Da	AQFK(1787.9396)TVSTR+Incorrect Mono 1Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	54.955	63.5	27.1	3.60E-15	36.4	4.30E-08	1	23.8	8.30E-05	31	2	8.30E-05	31.18	Inter	P25635	6	Q06078	661	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
1172.61	3	-4.2	LDIENDK(2294.2249)MGGK+Incorrect Mono 2Da	SIK(1360.6846)ESYSSFILHPFQTIR+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	49.784	98	28.8	4.80E-19	22.9	0.013	4	69.2	9.60E-13	1	3	1.30E-02	30.69	Intra	Q12220	237	Q12220	318	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
627.01	3	2.2	K(1089.5455)DIISGR+Incorrect Mono 1Da	FTAK(925.5233)NSER+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	30.8	57.2	26.4	4.30E-11	27	1.50E-04	3	30.8	2.30E-05	1	5	1.50E-04	30.22	Intra	P25635	557	P25635	572	Periodic tryptophan protein 2	Periodic tryptophan protein 2
1541.0421	4	1.7	EGSQSK(3135.5805)DYSSLLATLINFSPAAVDLEIR+Incorrect Mono 1Da	SLNSFEPFDEIVWFIDALTQGLK(3161.6132)SNK+Incorrect Mono 1Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	99.815	73.3	26.1	8.80E-16	46.6	2.50E-09	16	20.6	0.0048	19	0	4.80E-03	28.42	Intra	Q06078	828	Q06078	873	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
587.6683	3	-2.2	M(Met-loss+Acetyl)SIDLK(1015.5488)K	K(886.5313)VEEDVR	UTP_B_new_column_20101115_FTMSms2hcd	34.919	62	23.7	1.70E-10	34.8	2.90E-05	4	38.3	6.10E-06	1	6	2.90E-05	28.24	Intra	Q06078	6	Q06078	9	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
832.43	3	-4.7	NVLHHFNFK(1081.5404)EK+Incorrect Mono 1Da	TPDVNK(1549.8041)DR+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	32.834	63.5	25.5	8.30E-15	38	4.00E-08	1	19.4	0.003	5	2	3.00E-03	28.02	Intra	P25635	96	P25635	129	Periodic tryptophan protein 2	Periodic tryptophan protein 2
1031.91	3	-3.2	EVAVSTLK(929.5484)GQISIFNIEDAK+Incorrect Mono 2Da	K(2303.2562)DIISGR+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	49.52	71.2	25.2	7.40E-16	46	2.20E-09	1	20.6	0.0075	10	2	7.50E-03	27.32	Intra	P25635	536	P25635	557	Periodic tryptophan protein 2	Periodic tryptophan protein 2
958.49	4	-2.1	NVLHHFNFK(2416.1961)EK+Incorrect Mono 2Da	IWSVDSEEK(1553.8293)NLAATTFNGHR+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	41.679	66.3	24.8	1.80E-14	19.3	0.011	12	41.5	2.90E-08	1	1	1.10E-02	26.76	Intra	P25635	96	P25635	180	Periodic tryptophan protein 2	Periodic tryptophan protein 2
669.69	3	-8	FTAK(1052.5801)NSER+Incorrect Mono 2Da	K(1089.5455)MRPEVR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	20.892	45.8	21	4.10E-12	24.8	1.10E-05	1	23.9	2.00E-05	2	3	2.00E-05	25.7	Intra	P25635	572	P25635	674	Periodic tryptophan protein 2	Periodic tryptophan protein 2
620.69	3	-12	IEK(1079.6339)FSR+Incorrect Mono 1Da	TIK(916.5018)IPQSR+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	27.004	54.7	22.6	1.10E-08	25	0.0041	3	32.1	1.90E-04	1	4	4.10E-03	24.99	Inter	P40362	341	Q06078	245	U3 small nucleolar RNA-associated protein 18	U3 small nucleolar RNA-associated protein 21
654.0136	3	-1.1	TPDVNK(1015.5488)DR	K(1085.5655)VEEDVR	UTP_B_new_column_20101115_FTMSms2hcd	28.039	60.8	20.3	4.50E-11	40.5	8.60E-07	1	27.6	4.50E-04	4	3	4.50E-04	23.65	Inter	P25635	129	Q06078	9	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
1200.6642	3	-2	LSEIPGMVK(1355.7350)IVDAIIPYTQR+Incorrect Mono 1Da	FVK(2380.3076)QQWNLR+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	59.119	61.1	21.6	9.70E-14	39.5	4.70E-08	1	18	0.021	10	2	2.10E-02	23.28	Inter	Q05946	780	Q12220	909	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
998.27	4	-2.2	VDNLVEQSYILDYALVEMDK(1370.7496)LF+Incorrect Mono 2Da	FNHK(2758.3965)ELVSQK+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	66.588	39.9	21.8	6.80E-08	18.1	0.02	1	16.5	0.05	5	1	5.00E-02	23.1	Inter	Q05946	815	Q12220	866	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
1164.27	3	-10	GLWDVSFC(Carbamidomethyl)QYDK(1099.6943)LLATSSGDK+Incorrect Mono 1Da	NK(2531.2192)FLPVLK+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	46.117	51.8	20.2	2.80E-14	31.6	7.70E-08	2	17.9	0.0018	8	1	1.80E-03	22.94	Inter	Q05946	546	Q12220	515	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
1167.94	3	-8.4	VDNLVEQSYILDYALVEMDK(882.5175)LF+Incorrect Mono 2Da	VK(2754.3714)TELR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	60.452	50	21.7	1.20E-10	28.3	4.80E-05	1	16	0.071	2	3	7.10E-02	22.85	Inter	Q05946	815	Q12220	884	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
863.72	4	-7.9	LLATSSGDK(2230.1896)TVK+Incorrect Mono 2Da	DPTSPAPLK(1360.7752)THTIELQGQR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	29.515	52.9	20.7	9.30E-16	13.7	0.016	7	32.2	9.20E-09	1	0	1.60E-02	22.5	Inter	Q05946	555	Q12220	381	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
1339.7	3	-3.4	VDNLVEQSYILDYALVEMDK(1397.7816)LF+Incorrect Mono 2Da	NEELK(2758.3965)LQINR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	60.515	38.3	20.1	1.80E-08	16.5	0.024	4	18.2	0.008	1	1	2.40E-02	21.72	Inter	Q05946	815	Q12220	877	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
857.53	3	-3.4	LDIDQLQLSVK(1168.7621)K+Incorrect Mono 2Da	ILDLIISK(1540.9014)L+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	67.938	42	19.7	1.50E-08	22.3	8.70E-04	1	16.1	0.027	4	2	2.70E-02	21.27	Intra	Q02354	389	Q02354	439	U3 small nucleolar RNA-associated protein 6	U3 small nucleolar RNA-associated protein 6
794.45	4	-3.8	DMK(2197.2834)LWQR+Incorrect Mono 1Da	K(1113.5641)LGEAPIKPQGNAVLIAVNK+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	42.173	43.8	18.6	1.40E-13	14.1	0.0034	15	25.2	4.50E-07	3	2	3.40E-03	21.07	Intra	Q12220	774	Q12220	780	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
996.51	5	0.5	NFELYETFMSLLFK(2038.0561)AHGDVIHANNK+Incorrect Mono 2Da	STEDDLGFNVQGLK(3079.5415)FVK+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	61.493	35.1	17	8.00E-11	18	2.40E-04	4	18.1	2.20E-04	1	0	2.40E-04	20.62	Inter	Q06078	890	Q12220	906	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 12
896.1635	3	1.3	LFNVLK(1796.9108)R	DWNTNAK(1030.6477)THTIAQR	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	43.91	72.3	17.9	1.10E-14	20.4	0.0031	8	54.4	9.80E-11	1	1	3.10E-03	20.41	Intra	Q05946	699	Q05946	751	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 13
516.28	3	-5.9	K(670.3650)VEEDVR+Incorrect Mono 2Da	GK(1011.5237)NSK+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	10.059	46.4	18.3	1.10E-12	28.1	3.00E-07	1	12.9	0.01	7	4	1.00E-02	20.3	Intra	Q06078	9	Q06078	19	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
714.07	3	-9.9	NEELK(882.5175)LQINR+Incorrect Mono 1Da	VK(1393.7565)TELR+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	29.373	53.8	18.7	1.10E-10	35.1	2.50E-06	2	17.2	0.036	8	3	3.60E-02	20.14	Intra	Q12220	877	Q12220	884	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
512.64	3	4.5	QSK(888.5321)QR+Incorrect Mono 1Da	SLYK(783.4239)IK+Incorrect Mono 1Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	24.268	32.8	18.3	6.40E-07	14.5	0.014	1	13.4	0.025	2	4	2.50E-02	19.9	Intra	Q12220	253	Q12220	337	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
1315.32	3	-0.074	SHK(1359.7410)DSITGFWC(Carbamidomethyl)QGEDWLISTSK+Incorrect Mono 2Da	DGMIK(2723.2839)LWDLK+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	56.99	68.8	17.8	5.50E-18	51	7.40E-13	1	15.9	0.0095	12	1	9.50E-03	19.82	Intra	Q12220	163	Q12220	187	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
427.99	4	-2.3	GK(1174.6346)NSK+Incorrect Mono 1Da	AQFK(670.3650)TVSTR+Incorrect Mono 1Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	22.323	34.9	17.7	3.00E-08	14.1	0.018	5	17.2	0.0024	1	3	1.80E-02	19.44	Intra	Q06078	19	Q06078	661	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
1043.58	3	4	LDIDQLQLSVK(1728.8974)K	YFAYISK(1536.8763)LDSASVK	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	57.084	59	12.8	5.30E-17	28.5	3.60E-07	11	29.6	1.60E-07	10	0	3.60E-07	19.24	Intra	Q02354	389	Q02354	397	U3 small nucleolar RNA-associated protein 6	U3 small nucleolar RNA-associated protein 6
685.041	3	-6.9	K(1178.6597)VEEDVR	AQFK(1015.5488)TVSTR	UTP_B_3percent_FA_20101118_FTMSms2hcd	23.463	38.4	16.8	1.20E-07	21	0.0024	6	20.3	0.0036	7	1	3.60E-03	19.24	Intra	Q06078	9	Q06078	661	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
817.4281	3	-11	DQEAQK(1603.8660)K	LGFESHFTK(987.5175)QLR	UTP_B_new_column_20101115_FTMSms2hcd	35.344	41	17.6	1.10E-10	13.6	0.025	2	23.4	2.60E-05	1	1	2.50E-02	19.2	Intra	Q06078	794	Q06078	819	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
1082.26	3	0.57	SIDISDDNK(1180.6906)LLATASNGSLK+Incorrect Mono 2Da	IWNIK(2203.1522)THK+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	49.373	68.3	17.2	2.00E-17	51.1	1.30E-12	1	14	0.031	12	1	3.10E-02	18.71	Intra	Q12220	404	Q12220	420	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
801.6629	4	-3.9	TSYNESK(1308.7016)INGVHYINR	SQFEK(2036.0265)IYPR	UTP_B_new_column_20101115_FTMSms2hcd	37.952	51.9	17.5	4.90E-11	34.4	9.40E-07	3	13.9	0.097	17	0	9.70E-02	18.51	Intra	P40362	154	P40362	170	U3 small nucleolar RNA-associated protein 18	U3 small nucleolar RNA-associated protein 18
606.67	3	0.29	TPDVNK(872.5120)DR+Incorrect Mono 1Da	VGIYK(1081.5404)R+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	23.599	46	16.9	2.80E-07	29.1	3.80E-04	1	14.2	0.23	2	3	2.30E-01	17.54	Inter	P25635	129	Q06078	102	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
578.5754	4	-2.7	FK(1603.8660)VTGR	LGFESHFTK(848.5058)QLR	UTP_B_new_column_20101115_FTMSms2hcd	37.705	38.4	16.1	2.10E-06	17.4	0.07	2	22.3	0.0061	1	1	7.00E-02	17.25	Intra	Q06078	806	Q06078	819	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
633.36	5	-0.78	IK(2036.0265)VPILVTNK+Incorrect Mono 2Da	TSYNESK(1265.8261)INGVHYINR+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	44.979	33.6	15.2	1.90E-10	16.9	4.60E-05	2	9.8	0.0091	7	0	9.10E-03	17.24	Intra	P40362	134	P40362	154	U3 small nucleolar RNA-associated protein 18	U3 small nucleolar RNA-associated protein 18
1086.58	3	-6.8	EVAVSTLK(1093.5706)GQISIFNIEDAK+Incorrect Mono 2Da	FTAK(2303.2562)NSER+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	39.841	63.4	17.4	5.80E-12	44.8	1.00E-07	3	12.2	3	17	2	3.00E+00	16.92	Intra	P25635	536	P25635	572	Periodic tryptophan protein 2	Periodic tryptophan protein 2
1158.0808	4	-1.6	QGNITFSDDGK(2482.2169)QLLSPVGNR+Incorrect Mono 1Da	VSVFDLINNK(2283.1495)SFTFEYEHR+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	54.411	36.6	13.7	3.20E-13	22.9	2.10E-07	2	13	0.0034	23	0	3.40E-03	16.17	Intra	P25635	27	P25635	46	Periodic tryptophan protein 2	Periodic tryptophan protein 2
758.7565	3	0.29	NSK(1178.6597)IFSPFR	AQFK(1236.6805)TVSTR	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	44.567	36.2	14	2.60E-09	13.8	0.011	7	22.2	3.70E-05	1	1	1.10E-02	15.96	Intra	Q06078	22	Q06078	661	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
517.66	3	-11	LHK(996.6219)R+Incorrect Mono 1Da	STLLGK(690.4177)LK+Incorrect Mono 1Da	UTP_B_new_column_20101115_FTMSms2hcd	32.953	36.8	15.2	5.70E-09	8.8	0.22	2	21.6	7.60E-05	1	2	2.20E-01	15.86	Intra	Q06078	502	Q06078	539	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
737.4363	3	-0.64	AILVNFK(1178.6597)AR	AQFK(1172.7219)TVSTR	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	42.789	36.5	14.6	6.30E-09	21.9	7.10E-05	1	11.3	0.062	2	0	6.20E-02	15.81	Inter	P25635	85	Q06078	661	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
869.19	4	-8.8	K(1792.9008)C(Carbamidomethyl)LHTLQEHTSAVR+Incorrect Mono 1Da	DDIINLWDFNMK(1820.9505)K+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	37.917	40.8	16.2	6.70E-09	24.6	1.70E-04	2	9.2	2.5	58	0	2.50E+00	15.8	Intra	Q05946	181	Q05946	228	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 13
821.85	5	-8.3	DWNTNAK(2448.4269)THTIAQR+Incorrect Mono 1Da	TLLHSHLPLIC(Carbamidomethyl)K(1796.9108)NLFFIIK+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	41.986	49.6	15.6	4.60E-11	10.8	0.77	32	34	6.00E-07	2	0	7.70E-01	15.71	Inter	Q05946	751	Q12220	855	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
1188.14	4	-2.6	FIGDFAIESQHIEFNLIWIK(886.5426)ALLSASGGYINEHK+Incorrect Mono 2Da	VK(4002.0869)TELR+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	76.767	63.8	15.5	4.90E-16	48.3	1.00E-11	1	8.8	1.1	11	1	1.10E+00	15.46	Inter	P25635	800	Q12220	884	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 12
691.7297	3	-11	M(Met-loss+Acetyl)SIDLKK(1171.6499)R	RK(1042.6325)VEEDVR	UTP_B_new_column_20101115_FTMSms2hcd	40.387	33.5	13.9	1.10E-06	14.7	0.036	16	17.5	0.0077	8	1	3.60E-02	15.34	Intra	Q06078	7	Q06078	9	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
1069.78	5	-1.5	IEVIFNEELDQAISILNDEQLILLMK(2143.1438)R+Incorrect Mono 2Da	VWDLMSK(3340.8142)TVLLNFNGHK+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	59.343	29.2	14.3	5.80E-07	13.6	0.071	5	10.8	0.58	13	0	5.80E-01	14.54	Inter	Q05946	741	Q12220	111	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
597.3603	3	-1.1	AVK(1017.6008)DALR	VGGSTIK(913.5535)SK	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	28.417	40.4	12.6	7.90E-11	13.4	0.013	2	27.8	5.40E-07	1	1	1.30E-02	14.49	Inter	P40362	538	Q06078	408	U3 small nucleolar RNA-associated protein 18	U3 small nucleolar RNA-associated protein 21
840.41	4	-12	TPDVNK(2412.1710)DR+Incorrect Mono 2Da	IWSVDSEEK(1081.5404)NLAATTFNGHR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	33.638	51.2	14.3	3.30E-10	11.4	0.69	12	35.9	1.30E-06	2	2	6.90E-01	14.46	Intra	P25635	129	P25635	180	Periodic tryptophan protein 2	Periodic tryptophan protein 2
893.96	4	-6.9	MIITSSADK(2252.1238)NIK	FLPQSHNFFSC(Carbamidomethyl)SK(1461.8051)DAVVK	UTP_B_new_column_20101115_FTMSms2hcd	41.162	29.2	14	8.60E-06	11.8	0.57	6	15.2	0.065	3	0	5.70E-01	14.24	Intra	Q12220	595	Q12220	635	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
762.7549	3	-2.7	EK(1464.8378)C(Carbamidomethyl)SAVK	FILTTSK(962.5045)DLSAK	UTP_B_new_column_20101115_FTMSms2hcd	35.969	35.8	13	6.40E-07	10.2	1.3	6	22.8	0.001	1	0	1.30E+00	12.89	Intra	P25635	98	P25635	166	Periodic tryptophan protein 2	Periodic tryptophan protein 2
763.1846	4	-0.1	DMK(2073.2136)LWQR	LGEAPIK(1117.5892)PQGNAVLIAVNK	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	50.558	49	13	1.10E-10	6	11	47	36	2.30E-07	3	0	1.10E+01	11.96	Intra	Q12220	774	Q12220	787	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
483.5355	4	-1.7	IHVLK(801.4283)NIHR	K(1270.7812)QDGGR	UTP_B_new_column_20101115_FTMSms2hcd	27.792	23.9	11.2	3.30E-05	12.7	0.025	3	8.9	0.24	17	0	2.40E-01	11.82	Intra	Q06078	288	Q06078	396	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
780.355	4	-5.3	K(2625.1256)SEK+Incorrect Mono 2Da	HNYEFVDEYDQQEK(628.3432)ESNSAR+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	32.152	47.6	12.4	1.90E-13	6.1	4.3	26	35.2	1.90E-09	1	1	4.30E+00	11.77	Inter	Q06078	752	Q12220	929	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 12
510.5604	4	-1.9	AVK(1266.7561)DALR	IHVLK(909.5284)NIHR	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	32.478	26.2	9.4	3.80E-06	16.8	0.0022	3	14.7	0.0093	6	2	9.30E-03	11.43	Inter	P40362	538	Q06078	288	U3 small nucleolar RNA-associated protein 18	U3 small nucleolar RNA-associated protein 21
395.5507	6	-2.6	VK(1052.5801)C(Carbamidomethyl)VTFHPATR	K(1452.7548)MRPEVR	UTP_B_new_column_20101115_FTMSms2hcd	30.35	57.2	9.7	4.30E-13	47.5	1.20E-10	1	14.5	0.024	6	3	2.40E-02	11.32	Intra	P25635	264	P25635	674	Periodic tryptophan protein 2	Periodic tryptophan protein 2
1108.35	5	-9.1	SLNSFEPFDEIVWFIDALTQGLK(2537.2448)SNK+Incorrect Mono 2Da	NQDIASALQNWEDVHKK(3139.6056)EDR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	62.359	24.1	11.7	1.30E-06	12.4	0.028	5	6.2	5.5	17	1	5.50E+00	10.96	Intra	Q06078	873	Q06078	918	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
431.5279	4	-1.9	K(1084.6583)ILHK	IFHLK(779.5207)TGK	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	28.739	19.6	9	1.90E-05	10.6	0.015	3	10.2	0.02	6	1	2.00E-02	10.7	Intra	Q05946	51	Q05946	91	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 13
1085.82	4	-6.1	IWNLENGELEATLANHK(2230.1896)R+Incorrect Mono 2Da	DPTSPAPLK(2249.1742)THTIELQGQR+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	44.827	30.9	10.4	2.60E-08	7.4	1	7	20.5	6.00E-05	1	0	1.00E+00	10.4	Inter	Q05946	533	Q12220	381	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
513.3098	4	-2.4	IEK(1270.7812)FSR	IHVLK(920.5269)NIHR	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	32.272	24.1	9	1.10E-06	10.4	0.045	4	15.1	0.0012	1	1	4.50E-02	10.35	Inter	P40362	341	Q06078	288	U3 small nucleolar RNA-associated protein 18	U3 small nucleolar RNA-associated protein 21
1028.12	5	-5.1	SLNSFEPFDEIVWFIDALTQGLK(2137.0742)SNK+Incorrect Mono 1Da	NQDIASALQNWEDVHK(3139.6056)K+Incorrect Mono 1Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	64.763	20.6	10.4	8.50E-07	10.2	0.01	2	4.3	2.2	19	0	2.20E+00	10.06	Intra	Q06078	873	Q06078	917	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
1417.8	4	-4.6	LNEEYLINKVYEAIPIK(1870.0676)EIPLVASNIPAIYLPR+Incorrect Mono 2Da	TIK(3933.1907)IPQSRISSLSFR+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	72.73	58.5	10.4	1.40E-13	47.5	1.20E-10	4	8.4	3	37	0	3.00E+00	9.92	Inter	P25635	761	Q06078	245	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 21
1185.36	4	-5.8	IWSLDTFSVMK(2203.1522)TLEGHTNAVQR+Incorrect Mono 2Da	SIDISDDNK(2674.3727)LLATASNGSLK+Incorrect Mono 2Da	UTP_B_new_column_20101115_FTMSms2hcd	53.208	29.2	10	2.10E-08	8.3	1.8	38	19.2	1.30E-04	1	0	1.80E+00	9.74	Inter	Q05946	569	Q12220	404	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 12
830.71	4	1.3	QGNITFSDDGK(1172.7219)QLLSPVGNR+Incorrect Mono 1Da	AILVNFK(2287.1746)AR+Incorrect Mono 1Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	53.069	30.4	9.1	1.20E-09	21.3	3.60E-06	2	7.4	0.69	6	0	6.90E-01	9.26	Intra	P25635	27	P25635	85	Periodic tryptophan protein 2	Periodic tryptophan protein 2
863.45	5	-2.1	TSFFYIQNADK(2230.1896)TIETFR+Incorrect Mono 2Da	DPTSPAPLK(2222.1197)THTIELQGQR+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	54.415	29.3	8.7	4.70E-08	20.6	3.40E-05	1	6.2	1.8	30	0	1.80E+00	8.44	Intra	Q12220	279	Q12220	381	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
991.2	3	4.3	TSFFYIQNADK(888.5321)TIETFR+Incorrect Mono 2Da	SLYK(2218.0946)IK+Incorrect Mono 2Da	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	55.003	69.7	9.9	3.60E-18	59.8	2.30E-15	1	2.9	33	153	1	3.30E+01	8.38	Intra	Q12220	279	Q12220	337	U3 small nucleolar RNA-associated protein 12	U3 small nucleolar RNA-associated protein 12
911.77	7	5.9	KHFFYANQAK(3669.9117)VK(Xlink:DSS1)C(Carbamidomethyl)VTFHPATR	DTDLLAVGYADGVIKVWDLMSK(2843.4581)TVLLNFNGHK	UTP_B_new_column_20101115_FTMSms2hcd	68.765	22.4	8.2	2.90E-06	7.8	1.3	46	14.2	0.0043	4	0	1.30E+00	8.09	Inter	P25635	262	Q12220	111	Periodic tryptophan protein 2	U3 small nucleolar RNA-associated protein 12
696.2	5	-3.1	LTPDGQYLTYVSQAQLLK(800.5058)IFHLK	TGK(2817.5619)VVR	UTP_B_3percent_FA_20101118_FTMSms2hcd	45.442	19.2	8.9	2.30E-05	9.9	0.052	6	3	16	43	0	1.60E+01	7.7	Intra	Q05946	86	Q05946	94	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 13
1397.26	4	-8.9	IEVIFNEELDQAISILNDEQLILLMK(2384.3327)R+Incorrect Mono 2Da	LSEIPGMVK(3340.8142)IVDAIIPYTQR+Incorrect Mono 2Da	UTP_B_3percent_FA_20101118_FTMSms2hcd	63.844	31	7.6	3.00E-08	8	2.7	29	23.4	1.30E-05	1	0	2.70E+00	7.17	Intra	Q05946	741	Q05946	780	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 13
867.97	4	-1.5	IWNLENGELEATLANHK(1360.7752)R	LLATSSGDK(2249.1742)TVK	UTP_B_new_column_20101115_FTMSms2hcd	42.876	16.9	8	0.013	5.3	19	37	5.3	19	40	0	1.90E+01	6.72	Intra	Q05946	533	Q05946	555	U3 small nucleolar RNA-associated protein 13	U3 small nucleolar RNA-associated protein 13
780.7231	3	-6.1	DQEAQK(1493.7374)K	LDAEEQMNK(987.5175)FK	UTP_B_3percent_FA_20101118_FTMSms2hcd	26.654	24.4	6	4.80E-06	10.9	0.27	17	17.2	0.0016	2	1	2.70E-01	6.57	Intra	Q06078	794	Q06078	804	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
539.8165	4	-3.7	K(1056.6052)NIAAIDLNK	K(1240.7329)MRPEVR	UTP_B_new_column_20101115_FTMSms2hcd	33.191	30.6	7.7	3.90E-07	22.9	7.70E-05	3	3.7	43	77	0	4.30E+01	6.07	Intra	P25635	56	P25635	674	Periodic tryptophan protein 2	Periodic tryptophan protein 2
879.2156	4	-3.5	VSVFDLINNK(1168.6968)SFTFEYEHR	AILVNFK(2482.2169)AR	UTP_B_new_column_20101115_FTMSms2hcd	54.604	36.4	7	1.30E-07	29.4	9.20E-06	3	4.5	34	75	0	3.40E+01	5.47	Intra	P25635	46	P25635	85	Periodic tryptophan protein 2	Periodic tryptophan protein 2
470.2598	4	-3.4	EK(1056.6052)C(Carbamidomethyl)SAVK	K(962.5045)MRPEVR	UTP_B_new_column_20101115_FTMSms2hcd	26.207	20.1	6.3	3.80E-07	13.8	3.30E-04	1	4.5	7.3	19	1	7.30E+00	5.44	Intra	P25635	98	P25635	674	Periodic tryptophan protein 2	Periodic tryptophan protein 2
700.8804	4	-1.1	VGGSTIK(1923.9880)SK	IGEWENIITAHK(1017.6008)DEK	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	43.484	26.8	6.9	1.70E-07	-0.1	45	52	19.9	2.40E-05	1	0	4.50E+01	5.25	Intra	Q06078	408	Q06078	435	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
443.4761	5	-1.3	TIK(1270.7812)IPQSR	IHVLK(1083.6590)NIHR	HCD_UTP_6_centroid_cross_linking_20091003_091004150434_FTMSms2hcd	30.896	18.5	4.7	1.30E-05	13.8	9.20E-04	3	7	0.43	12	1	4.30E-01	5.07	Intra	Q06078	245	Q06078	288	U3 small nucleolar RNA-associated protein 21	U3 small nucleolar RNA-associated protein 21
922.98	4	-1.7	EK(2053.0884)C(Carbamidomethyl)SAVK(Xlink:DSS2)FSPDGR	FLQIWK(Xlink:DSS1)TPDVNK(1772.8767)DR	UTP_B_new_column_20101115_FTMSms2hcd	79.779	23.1	4.9	3.50E-04	11.2	0.62	4	10.6	0.9	5	1	9.00E-01	4.95	Intra	P25635	98	P25635	129	Periodic tryptophan protein 2	Periodic tryptophan protein 2