name	plate	gene_del	S/K	wrong_gene_del	chr_aberration	comment	point_mutation	high_confidence_point_mutation

parental strains (raw RHS material)								
SK1_RHS_Dip Parent_A1	parental strain	none	SK1_diploid				111	0
S288c_RHS_Dip Parent_1	parental strain	none	S288c_diploid				1	0
Spo_RHA_Hybrid_2A	parental strain	none	SK1/S288c				8	12
Spo_RHA_Hybrid_1C	parental strain	none	SK1/S288c		right arm of chr09:SS		35	17
SK1 proto_A1	parental strain	none	SK1_haploid				27	1
S288c proto A Final	parental strain	none	S288c_haploid				0	0
S288c Proto Alpha	parental strain	none	S288c_haploid				0	0
SK1_RHA_Final Mate Proto Alpha1	parental strain	none	SK1_haploid				low coverage	
SK1_RHA_Final Mate Proto Alpha1 no flocculent	parental strain	none	SK1_haploid				26	0

parental haploids for new RHS set								
HO NAT SK1_proto_A1 	parental strain	none	SK1_haploid				35	0
HO NAT SK1_Alpha3	parental strain	none	SK1_haploid				65	0
HO NAT S288c_proto_AI 	parental strain	none	S288c_haploid				144	2
HO NAT S288c_proto_AlphaI	parental strain	none	S288c_haploid				11	0

original haploid del strains (false positives)								
YDR123C_384matA_1_M10	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	INO2	BY4741_NE_Trans				30	21
YDR123C_384alphas_2_N15	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	INO2	BY4742_NE_Trans				0	3
YDR123C_272_A3	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	INO2	K2_NE_Trans	K present	probably diploid		9	12
YLR268W_384matA_11_P16	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	SEC22	BY4741_NE_Trans		chr11: SS		418	6
YLR268W_384alphas_12_G16	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	SEC22	BY4742_NE_Trans	new SNP after SEC22	chr11: SS	SNP given to hybrid new cross	135	20
YLR268W_273_D2	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	SEC22	K1_NE_Trans	K present	chr12: KK		10	30
YKL080W_222_B12	1. NONESS_TRANSFORMATION_on Gen original haploid del strains	VMA5	K1_NE_Trans				54	39

old RHS set (false positives)								
YDR123C_384matA_1_M10	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	INO2	INO2_BY4742_alpha x SK1_A				0	1
YDR123C_384alphas_2_N15	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	INO2	INO2_BY4741_AxSK1_alpha				3	3
YDR123C_272_A3	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	INO2	INO2_SK1_2_AxS288c_alpha	S deleted	"triploid KKS, chr10 diploid"	cross of KK+S	3	4
YLR268W_384matA_11_P16	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	SEC22	SEC22_BY4742_alphaxSK1_A		mostly triploid SSK		0	3
YLR268W_384alphas_12_G16	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	SEC22	SEC22_BY4741_AxSK1_alpha		chr11: SSK		0	3
YLR268W_273_D2	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	SEC22	SEC22_SK1_2_AxS288c_alpha		chr11: SSK		0	3
YLR268W_273_D2	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	SEC22	SEC22_SK1_1_AxS288c_alpha		"chr11: SSK, chr12:SSKK"		0	1
YKL080W_384matA_2_C24	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	VMA5	4741 x Sk1_Proto_Alpha				50	24
YKL080W_384alphas_4_O18	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	VMA5	4742 x Sk1_Proto_A				10	21
YKL080W_222_B12	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	VMA5	K1x S288c_Proto_Alpha	S present	chr11: KKS		8	7
YKL080W_222_B12	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	VMA5	K2 x S288c_Proto_Alpha	S present	chr11: KKS		7	4

 old RHS set (random strains)								
YLL003W_302_B01	2. ESSENTIAL TRANSFORMATION_on Gen hybrid (old RHS dipl.)	SFI1	S1_NE_Trans	K deleted	chr06_right:SS	parental hybrid had the chr06 aberration already	27	33
YLL003W_302_B01	2. ESSENTIAL TRANSFORMATION_on Gen hybrid (old RHS dipl.)	SFI1	S2_NE_Trans	K deleted	chr06_right:SS	parental hybrid had the chr06 aberration already	29	39
YLL003W_302_B01	2. ESSENTIAL TRANSFORMATION_on Gen hybrid (old RHS dipl.)	SFI1	K1_NE_Trans	S deleted	chr06_right:SS	parental hybrid had the chr06 aberration already	42	39
YLL003W_302_B01	2. ESSENTIAL TRANSFORMATION_on Gen hybrid (old RHS dipl.)	SFI1	K2_NE_Trans	S deleted	chr06_right:SS	parental hybrid had the chr06 aberration already	12	22
YHL010C_384matA_10_F16	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	ETP1	4741 x Sk1_Proto_Alpha				110	40
YHL010C_384alphas_11_L16	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	ETP1	4742 x Sk1_Proto_A				4	22
YHL010C_217_B1	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	ETP1	K1x S288c_Proto_Alpha				8	18
YHL010C_217_B1	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	ETP1	K2 x S288c_Proto_Alpha				0	3
YHR121W_384matA_10_J20	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	LSM12	4741 x Sk1_Proto_Alpha				9	15
YHR121W_384alphas_11_O20	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	LSM12	4742 x Sk1_Proto_A				15	26
YHR121W_218_A12	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	LSM12	K1x S288c_Proto_Alpha				10	21
YHR121W_218_A12	3. NON ESSENTIAL OLD CROSS _on Gen hybrid (old RHS dipl.)	LSM12	K2 x S288c_Proto_Alpha				25	26

new RHS set (check if mutation is cured)								
YDR123C_384matA_1_M10	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	INO2	4741 x Sk1_Proto_Alpha				7	30
YDR123C_384alphas_2_N15	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	INO2	4742 x Sk1_Proto_A				10	28
YDR123C_272_A3	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	INO2	K2 x S288c_Proto_Alpha*	S present		cured	5	20
YLR268W_384matA_11_P16	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	SEC22	4741 x Sk1_Proto_Alpha		chr11: SSK		1	7
YLR268W_384alphas_12_G16	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	SEC22	4742 x Sk1_Proto_A	new SNP after SEC22	chr11: SSK	SNP taken over from haploid	8	18
YLR268W_273_D2	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	SEC22	K1x S288c_Proto_Alpha *				22	23
YKL080W_222_B12	4. NON ESSENTIAL new CROSS with HO NAT_on Gen+Nat hybrid	VMA5	K1x S288c_Proto_Alpha *				11	14

newly reconstructed on hybrid								
SEC22_R_K1	transformd on hybrid	SEC22	SK1/S288c				21	24
SEC22_R_K2	transformd on hybrid	SEC22	SK1/S288c				287	16
SEC22_R_S1	transformd on hybrid	SEC22	SK1/S288c				153	22
SEC22_R_S2	transformd on hybrid	SEC22	SK1/S288c				146	17