Fast and Efficient Estimation of Individual Ancestry Coefficients

Files in this data supplement:

  • Supporting Information: Tables S1-S2 and Figures S1-S5 (PDF, 286 KB)
  • Table S1: Root mean square error (RMSE) for 6 HGDP data sets as a function of the regularization parameter. (PDF, 54 KB)
  • Table S2: Choice of K for sNMF using the cross-entropy criterion (simulated data). (PDF, 64 KB)
  • Figure S1: Run-times for sNMF. (PDF, 80 KB)
  • Figure S2: Values of the cross-entropy criterion for sNMF algorithms. (PDF, 93 KB)
  • Figure S3: Graphical representation of admixture estimates for European populations of A. thaliana. (PDF, 99 KB)
  • Figure S4: Accuracy of ADMIXTURE and sNMF in the presence of linkage disequilibrium. (PDF, 111 KB)
  • Figure S5: Accuracy of ADMIXTURE and sNMF in the presence of related individuals. (PDF, 152 KB)