Benchmarking of Methods for Genomic Taxonomy

Supplemental material

Files in this Data Supplement:

• Supplemental file 1 -

  Supplemental legends

  PDF, 44K

• Supplemental file 2 -

  File S2 (Predictions for the most common species in the NCBI_drafts set SpeciesFinder, rMLST, KmerFinder, TaxonomyFinder, and whole-genome BLAST-based methods)

  PDF, 584K

• Supplemental file 3 -

  Fig. S1 (Distribution of N50 values for the draft genomes of the SRA_drafts set)

  PDF, 121K

• Supplemental file 4 -

  Fig. S2 (Predictions for the most common species in the SRA_reads dataset)

  PDF, 797K

• Supplemental file 5 -

  File S1 (Overview of the results for SpeciesFinder, rMLST, TaxonomyFinder, and KmerFinder for the NCBI_drafts set)

  XLSX, 70K

• Supplemental file 6 -

  Table S1 (Overview of the training data)

  XLSX, 134K

• Supplemental file 7 -

  Table S2 (Overview of the NCBI_drafts evaluation set)

  XLSX, 30K

• Supplemental file 8 -

  Table S3 (Overview of the SRA_drafts and SRA_reads evaluation sets)

  XLSX, 718K