File S3. Pedigree for 178 progeny lines from MAGIC Indica population after selfing for four generations. Progeny which are genotyped are indicated in fourth column (value 1) and have row names labelled to match genotypes in data. ,,,,
,id,Male,Female,Observed
A,1,0,0,0
B,2,0,0,0
C,3,0,0,0
D,4,0,0,0
E,5,0,0,0
F,6,0,0,0
G,7,0,0,0
H,8,0,0,0
9,9,1,8,0
10,10,1,7,0
11,11,1,6,0
12,12,1,4,0
13,13,4,5,0
14,14,4,8,0
15,15,8,5,0
16,16,6,2,0
17,17,6,5,0
18,18,6,3,0
19,19,7,3,0
20,20,8,3,0
21,21,8,7,0
22,22,2,7,0
23,23,2,3,0
24,24,4,2,0
25,25,7,5,0
26,26,9,13,0
27,27,10,14,0
28,28,11,15,0
29,29,12,16,0
30,30,12,17,0
31,31,18,22,0
32,32,17,23,0
33,33,19,24,0
34,34,20,25,0
35,35,21,23,0
36,36,26,31,0
37,37,27,32,0
38,38,28,33,0
39,39,29,34,0
40,40,30,35,0
41,41,36,36,0
42,42,41,41,0
43,43,42,42,0
MAGICINDICA1,44,43,43,1
45,45,36,36,0
46,46,41,41,0
47,47,42,42,0
MAGICINDICA2,48,43,43,1
49,49,37,37,0
50,50,49,49,0
51,51,50,50,0
MAGICINDICA3,52,51,51,1
53,53,37,37,0
54,54,49,49,0
55,55,50,50,0
MAGICINDICA4,56,51,51,1
57,57,36,36,0
58,58,41,41,0
59,59,42,42,0
MAGICINDICA5,60,43,43,1
61,61,36,36,0
62,62,41,41,0
63,63,42,42,0
MAGICINDICA6,64,43,43,1
65,65,36,36,0
66,66,41,41,0
67,67,42,42,0
MAGICINDICA7,68,43,43,1
69,69,36,36,0
70,70,41,41,0
71,71,42,42,0
MAGICINDICA8,72,43,43,1
73,73,36,36,0
74,74,41,41,0
75,75,42,42,0
MAGICINDICA9,76,43,43,1
77,77,36,36,0
78,78,41,41,0
79,79,42,42,0
MAGICINDICA10,80,43,43,1
81,81,36,36,0
82,82,41,41,0
83,83,42,42,0
MAGICINDICA11,84,43,43,1
85,85,36,36,0
86,86,41,41,0
87,87,42,42,0
MAGICINDICA12,88,43,43,1
89,89,36,36,0
90,90,41,41,0
91,91,42,42,0
MAGICINDICA13,92,43,43,1
93,93,36,36,0
94,94,41,41,0
95,95,42,42,0
MAGICINDICA14,96,43,43,1
97,97,36,36,0
98,98,41,41,0
99,99,42,42,0
MAGICINDICA15,100,43,43,1
101,101,36,36,0
102,102,41,41,0
103,103,42,42,0
MAGICINDICA16,104,43,43,1
105,105,36,36,0
106,106,41,41,0
107,107,42,42,0
MAGICINDICA17,108,43,43,1
109,109,36,36,0
110,110,41,41,0
111,111,42,42,0
MAGICINDICA18,112,43,43,1
113,113,36,36,0
114,114,41,41,0
115,115,42,42,0
MAGICINDICA19,116,43,43,1
117,117,36,36,0
118,118,41,41,0
119,119,42,42,0
MAGICINDICA20,120,43,43,1
121,121,38,38,0
122,122,121,121,0
123,123,122,122,0
MAGICINDICA21,124,123,123,1
125,125,38,38,0
126,126,121,121,0
127,127,122,122,0
MAGICINDICA22,128,123,123,1
129,129,38,38,0
130,130,121,121,0
131,131,122,122,0
MAGICINDICA23,132,123,123,1
133,133,38,38,0
134,134,121,121,0
135,135,122,122,0
MAGICINDICA24,136,123,123,1
137,137,38,38,0
138,138,121,121,0
139,139,122,122,0
MAGICINDICA25,140,123,123,1
141,141,38,38,0
142,142,121,121,0
143,143,122,122,0
MAGICINDICA26,144,123,123,1
145,145,38,38,0
146,146,121,121,0
147,147,122,122,0
MAGICINDICA27,148,123,123,1
149,149,38,38,0
150,150,121,121,0
151,151,122,122,0
MAGICINDICA28,152,123,123,1
153,153,38,38,0
154,154,121,121,0
155,155,122,122,0
MAGICINDICA29,156,123,123,1
157,157,36,36,0
158,158,41,41,0
159,159,42,42,0
MAGICINDICA30,160,43,43,1
161,161,38,38,0
162,162,121,121,0
163,163,122,122,0
MAGICINDICA31,164,123,123,1
165,165,38,38,0
166,166,121,121,0
167,167,122,122,0
MAGICINDICA32,168,123,123,1
169,169,38,38,0
170,170,121,121,0
171,171,122,122,0
MAGICINDICA33,172,123,123,1
173,173,38,38,0
174,174,121,121,0
175,175,122,122,0
MAGICINDICA34,176,123,123,1
177,177,38,38,0
178,178,121,121,0
179,179,122,122,0
MAGICINDICA35,180,123,123,1
181,181,38,38,0
182,182,121,121,0
183,183,122,122,0
MAGICINDICA36,184,123,123,1
185,185,38,38,0
186,186,121,121,0
187,187,122,122,0
MAGICINDICA37,188,123,123,1
189,189,38,38,0
190,190,121,121,0
191,191,122,122,0
MAGICINDICA38,192,123,123,1
193,193,38,38,0
194,194,121,121,0
195,195,122,122,0
MAGICINDICA39,196,123,123,1
197,197,38,38,0
198,198,121,121,0
199,199,122,122,0
MAGICINDICA40,200,123,123,1
201,201,36,36,0
202,202,41,41,0
203,203,42,42,0
MAGICINDICA41,204,43,43,1
205,205,38,38,0
206,206,121,121,0
207,207,122,122,0
MAGICINDICA42,208,123,123,1
209,209,38,38,0
210,210,121,121,0
211,211,122,122,0
MAGICINDICA43,212,123,123,1
213,213,38,38,0
214,214,121,121,0
215,215,122,122,0
MAGICINDICA44,216,123,123,1
217,217,38,38,0
218,218,121,121,0
219,219,122,122,0
MAGICINDICA45,220,123,123,1
221,221,38,38,0
222,222,121,121,0
223,223,122,122,0
MAGICINDICA46,224,123,123,1
225,225,38,38,0
226,226,121,121,0
227,227,122,122,0
MAGICINDICA47,228,123,123,1
229,229,38,38,0
230,230,121,121,0
231,231,122,122,0
MAGICINDICA48,232,123,123,1
233,233,38,38,0
234,234,121,121,0
235,235,122,122,0
MAGICINDICA49,236,123,123,1
237,237,36,36,0
238,238,41,41,0
239,239,42,42,0
MAGICINDICA50,240,43,43,1
241,241,38,38,0
242,242,121,121,0
243,243,122,122,0
MAGICINDICA51,244,123,123,1
245,245,38,38,0
246,246,121,121,0
247,247,122,122,0
MAGICINDICA52,248,123,123,1
249,249,38,38,0
250,250,121,121,0
251,251,122,122,0
MAGICINDICA53,252,123,123,1
253,253,38,38,0
254,254,121,121,0
255,255,122,122,0
MAGICINDICA54,256,123,123,1
257,257,38,38,0
258,258,121,121,0
259,259,122,122,0
MAGICINDICA55,260,123,123,1
261,261,38,38,0
262,262,121,121,0
263,263,122,122,0
MAGICINDICA56,264,123,123,1
265,265,38,38,0
266,266,121,121,0
267,267,122,122,0
MAGICINDICA57,268,123,123,1
269,269,38,38,0
270,270,121,121,0
271,271,122,122,0
MAGICINDICA58,272,123,123,1
273,273,38,38,0
274,274,121,121,0
275,275,122,122,0
MAGICINDICA59,276,123,123,1
277,277,37,37,0
278,278,49,49,0
279,279,50,50,0
MAGICINDICA60,280,51,51,1
281,281,36,36,0
282,282,41,41,0
283,283,42,42,0
MAGICINDICA61,284,43,43,1
285,285,37,37,0
286,286,49,49,0
287,287,50,50,0
MAGICINDICA62,288,51,51,1
289,289,37,37,0
290,290,49,49,0
291,291,50,50,0
MAGICINDICA63,292,51,51,1
293,293,37,37,0
294,294,49,49,0
295,295,50,50,0
MAGICINDICA64,296,51,51,1
297,297,37,37,0
298,298,49,49,0
299,299,50,50,0
MAGICINDICA65,300,51,51,1
301,301,37,37,0
302,302,49,49,0
303,303,50,50,0
MAGICINDICA66,304,51,51,1
305,305,37,37,0
306,306,49,49,0
307,307,50,50,0
MAGICINDICA67,308,51,51,1
309,309,37,37,0
310,310,49,49,0
311,311,50,50,0
MAGICINDICA68,312,51,51,1
313,313,37,37,0
314,314,49,49,0
315,315,50,50,0
MAGICINDICA69,316,51,51,1
317,317,37,37,0
318,318,49,49,0
319,319,50,50,0
MAGICINDICA70,320,51,51,1
321,321,37,37,0
322,322,49,49,0
323,323,50,50,0
MAGICINDICA71,324,51,51,1
325,325,36,36,0
326,326,41,41,0
327,327,42,42,0
MAGICINDICA72,328,43,43,1
329,329,37,37,0
330,330,49,49,0
331,331,50,50,0
MAGICINDICA73,332,51,51,1
333,333,37,37,0
334,334,49,49,0
335,335,50,50,0
MAGICINDICA74,336,51,51,1
337,337,37,37,0
338,338,49,49,0
339,339,50,50,0
MAGICINDICA75,340,51,51,1
341,341,37,37,0
342,342,49,49,0
343,343,50,50,0
MAGICINDICA76,344,51,51,1
345,345,37,37,0
346,346,49,49,0
347,347,50,50,0
MAGICINDICA77,348,51,51,1
349,349,37,37,0
350,350,49,49,0
351,351,50,50,0
MAGICINDICA78,352,51,51,1
353,353,37,37,0
354,354,49,49,0
355,355,50,50,0
MAGICINDICA79,356,51,51,1
357,357,37,37,0
358,358,49,49,0
359,359,50,50,0
MAGICINDICA80,360,51,51,1
361,361,37,37,0
362,362,49,49,0
363,363,50,50,0
MAGICINDICA81,364,51,51,1
365,365,37,37,0
366,366,49,49,0
367,367,50,50,0
MAGICINDICA82,368,51,51,1
369,369,36,36,0
370,370,41,41,0
371,371,42,42,0
MAGICINDICA83,372,43,43,1
373,373,37,37,0
374,374,49,49,0
375,375,50,50,0
MAGICINDICA84,376,51,51,1
377,377,37,37,0
378,378,49,49,0
379,379,50,50,0
MAGICINDICA85,380,51,51,1
381,381,37,37,0
382,382,49,49,0
383,383,50,50,0
MAGICINDICA86,384,51,51,1
385,385,37,37,0
386,386,49,49,0
387,387,50,50,0
MAGICINDICA87,388,51,51,1
389,389,37,37,0
390,390,49,49,0
391,391,50,50,0
MAGICINDICA88,392,51,51,1
393,393,37,37,0
394,394,49,49,0
395,395,50,50,0
MAGICINDICA89,396,51,51,1
397,397,37,37,0
398,398,49,49,0
399,399,50,50,0
MAGICINDICA90,400,51,51,1
401,401,37,37,0
402,402,49,49,0
403,403,50,50,0
MAGICINDICA91,404,51,51,1
405,405,37,37,0
406,406,49,49,0
407,407,50,50,0
MAGICINDICA92,408,51,51,1
409,409,37,37,0
410,410,49,49,0
411,411,50,50,0
MAGICINDICA93,412,51,51,1
413,413,37,37,0
414,414,49,49,0
415,415,50,50,0
MAGICINDICA94,416,51,51,1
417,417,37,37,0
418,418,49,49,0
419,419,50,50,0
MAGICINDICA95,420,51,51,1
421,421,37,37,0
422,422,49,49,0
423,423,50,50,0
MAGICINDICA96,424,51,51,1
425,425,37,37,0
426,426,49,49,0
427,427,50,50,0
MAGICINDICA97,428,51,51,1
429,429,37,37,0
430,430,49,49,0
431,431,50,50,0
MAGICINDICA98,432,51,51,1
433,433,37,37,0
434,434,49,49,0
435,435,50,50,0
MAGICINDICA99,436,51,51,1
437,437,37,37,0
438,438,49,49,0
439,439,50,50,0
MAGICINDICA100,440,51,51,1
441,441,39,39,0
442,442,441,441,0
443,443,442,442,0
MAGICINDICA101,444,443,443,1
445,445,39,39,0
446,446,441,441,0
447,447,442,442,0
MAGICINDICA102,448,443,443,1
449,449,39,39,0
450,450,441,441,0
451,451,442,442,0
MAGICINDICA103,452,443,443,1
453,453,39,39,0
454,454,441,441,0
455,455,442,442,0
MAGICINDICA104,456,443,443,1
457,457,39,39,0
458,458,441,441,0
459,459,442,442,0
MAGICINDICA105,460,443,443,1
461,461,39,39,0
462,462,441,441,0
463,463,442,442,0
MAGICINDICA106,464,443,443,1
465,465,39,39,0
466,466,441,441,0
467,467,442,442,0
MAGICINDICA107,468,443,443,1
469,469,39,39,0
470,470,441,441,0
471,471,442,442,0
MAGICINDICA108,472,443,443,1
473,473,39,39,0
474,474,441,441,0
475,475,442,442,0
MAGICINDICA109,476,443,443,1
477,477,39,39,0
478,478,441,441,0
479,479,442,442,0
MAGICINDICA110,480,443,443,1
481,481,39,39,0
482,482,441,441,0
483,483,442,442,0
MAGICINDICA111,484,443,443,1
485,485,39,39,0
486,486,441,441,0
487,487,442,442,0
MAGICINDICA112,488,443,443,1
489,489,39,39,0
490,490,441,441,0
491,491,442,442,0
MAGICINDICA113,492,443,443,1
493,493,39,39,0
494,494,441,441,0
495,495,442,442,0
MAGICINDICA114,496,443,443,1
497,497,39,39,0
498,498,441,441,0
499,499,442,442,0
MAGICINDICA115,500,443,443,1
501,501,39,39,0
502,502,441,441,0
503,503,442,442,0
MAGICINDICA116,504,443,443,1
505,505,39,39,0
506,506,441,441,0
507,507,442,442,0
MAGICINDICA117,508,443,443,1
509,509,39,39,0
510,510,441,441,0
511,511,442,442,0
MAGICINDICA118,512,443,443,1
513,513,39,39,0
514,514,441,441,0
515,515,442,442,0
MAGICINDICA119,516,443,443,1
517,517,39,39,0
518,518,441,441,0
519,519,442,442,0
MAGICINDICA120,520,443,443,1
521,521,39,39,0
522,522,441,441,0
523,523,442,442,0
MAGICINDICA121,524,443,443,1
525,525,39,39,0
526,526,441,441,0
527,527,442,442,0
MAGICINDICA122,528,443,443,1
529,529,39,39,0
530,530,441,441,0
531,531,442,442,0
MAGICINDICA123,532,443,443,1
533,533,39,39,0
534,534,441,441,0
535,535,442,442,0
MAGICINDICA124,536,443,443,1
537,537,39,39,0
538,538,441,441,0
539,539,442,442,0
MAGICINDICA125,540,443,443,1
541,541,39,39,0
542,542,441,441,0
543,543,442,442,0
MAGICINDICA126,544,443,443,1
545,545,39,39,0
546,546,441,441,0
547,547,442,442,0
MAGICINDICA127,548,443,443,1
549,549,39,39,0
550,550,441,441,0
551,551,442,442,0
MAGICINDICA128,552,443,443,1
553,553,39,39,0
554,554,441,441,0
555,555,442,442,0
MAGICINDICA129,556,443,443,1
557,557,39,39,0
558,558,441,441,0
559,559,442,442,0
MAGICINDICA130,560,443,443,1
561,561,39,39,0
562,562,441,441,0
563,563,442,442,0
MAGICINDICA131,564,443,443,1
565,565,39,39,0
566,566,441,441,0
567,567,442,442,0
MAGICINDICA132,568,443,443,1
569,569,39,39,0
570,570,441,441,0
571,571,442,442,0
MAGICINDICA133,572,443,443,1
573,573,39,39,0
574,574,441,441,0
575,575,442,442,0
MAGICINDICA134,576,443,443,1
577,577,39,39,0
578,578,441,441,0
579,579,442,442,0
MAGICINDICA135,580,443,443,1
581,581,39,39,0
582,582,441,441,0
583,583,442,442,0
MAGICINDICA136,584,443,443,1
585,585,39,39,0
586,586,441,441,0
587,587,442,442,0
MAGICINDICA137,588,443,443,1
589,589,39,39,0
590,590,441,441,0
591,591,442,442,0
MAGICINDICA138,592,443,443,1
593,593,39,39,0
594,594,441,441,0
595,595,442,442,0
MAGICINDICA139,596,443,443,1
597,597,39,39,0
598,598,441,441,0
599,599,442,442,0
MAGICINDICA140,600,443,443,1
601,601,39,39,0
602,602,441,441,0
603,603,442,442,0
MAGICINDICA141,604,443,443,1
605,605,39,39,0
606,606,441,441,0
607,607,442,442,0
MAGICINDICA142,608,443,443,1
609,609,39,39,0
610,610,441,441,0
611,611,442,442,0
MAGICINDICA143,612,443,443,1
613,613,39,39,0
614,614,441,441,0
615,615,442,442,0
MAGICINDICA144,616,443,443,1
617,617,39,39,0
618,618,441,441,0
619,619,442,442,0
MAGICINDICA145,620,443,443,1
621,621,39,39,0
622,622,441,441,0
623,623,442,442,0
MAGICINDICA146,624,443,443,1
625,625,39,39,0
626,626,441,441,0
627,627,442,442,0
MAGICINDICA147,628,443,443,1
629,629,39,39,0
630,630,441,441,0
631,631,442,442,0
MAGICINDICA148,632,443,443,1
633,633,39,39,0
634,634,441,441,0
635,635,442,442,0
MAGICINDICA149,636,443,443,1
637,637,39,39,0
638,638,441,441,0
639,639,442,442,0
MAGICINDICA150,640,443,443,1
641,641,39,39,0
642,642,441,441,0
643,643,442,442,0
MAGICINDICA151,644,443,443,1
645,645,39,39,0
646,646,441,441,0
647,647,442,442,0
MAGICINDICA152,648,443,443,1
649,649,39,39,0
650,650,441,441,0
651,651,442,442,0
MAGICINDICA153,652,443,443,1
653,653,39,39,0
654,654,441,441,0
655,655,442,442,0
MAGICINDICA154,656,443,443,1
657,657,39,39,0
658,658,441,441,0
659,659,442,442,0
MAGICINDICA155,660,443,443,1
661,661,39,39,0
662,662,441,441,0
663,663,442,442,0
MAGICINDICA156,664,443,443,1
665,665,39,39,0
666,666,441,441,0
667,667,442,442,0
MAGICINDICA157,668,443,443,1
669,669,39,39,0
670,670,441,441,0
671,671,442,442,0
MAGICINDICA158,672,443,443,1
673,673,39,39,0
674,674,441,441,0
675,675,442,442,0
MAGICINDICA159,676,443,443,1
677,677,39,39,0
678,678,441,441,0
679,679,442,442,0
MAGICINDICA160,680,443,443,1
681,681,39,39,0
682,682,441,441,0
683,683,442,442,0
MAGICINDICA161,684,443,443,1
685,685,40,40,0
686,686,685,685,0
687,687,686,686,0
MAGICINDICA162,688,687,687,1
689,689,40,40,0
690,690,685,685,0
691,691,686,686,0
MAGICINDICA163,692,687,687,1
693,693,40,40,0
694,694,685,685,0
695,695,686,686,0
MAGICINDICA164,696,687,687,1
697,697,40,40,0
698,698,685,685,0
699,699,686,686,0
MAGICINDICA165,700,687,687,1
701,701,40,40,0
702,702,685,685,0
703,703,686,686,0
MAGICINDICA166,704,687,687,1
705,705,40,40,0
706,706,685,685,0
707,707,686,686,0
MAGICINDICA167,708,687,687,1
709,709,40,40,0
710,710,685,685,0
711,711,686,686,0
MAGICINDICA168,712,687,687,1
713,713,40,40,0
714,714,685,685,0
715,715,686,686,0
MAGICINDICA169,716,687,687,1
717,717,40,40,0
718,718,685,685,0
719,719,686,686,0
MAGICINDICA170,720,687,687,1
721,721,40,40,0
722,722,685,685,0
723,723,686,686,0
MAGICINDICA171,724,687,687,1
725,725,40,40,0
726,726,685,685,0
727,727,686,686,0
MAGICINDICA172,728,687,687,1
729,729,40,40,0
730,730,685,685,0
731,731,686,686,0
MAGICINDICA173,732,687,687,1
733,733,40,40,0
734,734,685,685,0
735,735,686,686,0
MAGICINDICA174,736,687,687,1
737,737,40,40,0
738,738,685,685,0
739,739,686,686,0
MAGICINDICA175,740,687,687,1
741,741,40,40,0
742,742,685,685,0
743,743,686,686,0
MAGICINDICA176,744,687,687,1
745,745,40,40,0
746,746,685,685,0
747,747,686,686,0
MAGICINDICA177,748,687,687,1
749,749,40,40,0
750,750,685,685,0
751,751,686,686,0
MAGICINDICA178,752,687,687,1