N-Terminal-oriented Proteogenomics of the Marine Bacterium Roseobacter Denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) Labeling and Diagonal Chromatography

Supplemental Data

Files in this Data Supplement:

  • Supplemental data, Figure S1 & Figure S2 - Supplementary Figure S1. Multiple translation start sites found in the ferredoxin-NADP reductase (YP_683175.1). Supplementary Figure S2. Multiple translation start sites found in the hypothetical protein RD1_1231 (YP_681565.1).
  • Supplemental data, Table S1 - Supplementary Table S1. List of MS/MS queries assigned to peptides in the CDS database and corresponding proteins.
  • Supplemental data, Table S2 - Supplementary Table S2. List of MS/MS queries assigned to peptides in the ORF database with specific and semi-specific enzyme search modes and corresponding proteins.
  • Supplemental data, Table S3 - Supplementary Table S3. List of peptide identifications corresponding to a possible start (ATG, GTG and TTG codons) in the ORF database and corresponding proteins before manual validation sorted by initiation event, accession name and start and stop positions.
  • Supplemental data, Table S4 - Supplementary Table S4. List of TMPP-modified peptide signatures assigned to the N-termini of proteins previously annotated or matching the upstream/downstream region of previously annotated proteins.
  • Supplemental data, Table S5 - Supplementary Table S5. List of TMPP-modified peptide signatures not identified in the CDS database.