Table 3. Motifs discovered using the masked promoter database achieving P < 0.05
Day |
Motif |
Frequency |
Nominal P value |
Adjusted P value |
1 |
TGACCTTG |
0.04 |
7.30 ´ 10-11 |
4.78 ´ 10-6 |
TGACCTT |
0.09 |
2.65 ´ 10-7 |
4.34 ´ 10-3 |
|
AAGGTC |
0.20 |
7.83 ´ 10-6 |
3.21 ´ 10-2 |
|
|
CTTCCGG |
0.12 |
2.56 ´ 10-6 |
4.20 ´ 10-2 |
2 |
TGACCT |
0.26 |
1.43 ´ 10-13 |
5.84 ´ 10-10 |
TGACCTT |
0.09 |
1.74 ´ 10-12 |
2.85 ´ 10-8 |
|
TGACCTTG |
0.04 |
2.59 ´ 10-9 |
1.70 ´ 10-4 |
|
GACCTT |
0.23 |
4.88 ´ 10-8 |
2.00 ´ 10-4 |
|
GTGACCTT |
0.03 |
3.23 ´ 10-9 |
2.12 ´ 10-4 |
|
GTGACCT |
0.09 |
1.58 ´ 10-8 |
2.59 ´ 10-4 |
|
AGGTCA |
0.25 |
2.04 ´ 10-7 |
8.37 ´ 10-4 |
|
GACCTTG |
0.08 |
7.65 ´ 10-8 |
1.25 ´ 10-3 |
|
GTGACCTTG |
0.02 |
3.02 ´ 10-8 |
7.93 ´ 10-3 |
|
GGTCAC |
0.24 |
2.00 ´ 10-6 |
8.17 ´ 10-3 |
|
ACCTTG |
0.22 |
2.05 ´ 10-6 |
8.38 ´ 10-3 |
|
AGGTCAC |
0.08 |
8.57 ´ 10-7 |
1.40 ´ 10-2 |
|
|
TTTTCGT |
0.02 |
1.96 ´ 10-6 |
3.22 ´ 10-2 |
3 |
TGACCTT |
0.09 |
7.77 ´ 10-16 |
1.27 ´ 10-11 |
CTTCCG |
0.25 |
7.59 ´ 10-14 |
3.11 ´ 10-10 |
|
TGACCTTG |
0.04 |
8.68 ´ 10-13 |
5.69 ´ 10-8 |
|
GTGACCTT |
0.03 |
8.75 ´ 10-13 |
5.74 ´ 10-8 |
|
CTTCCGG |
0.12 |
6.12 ´ 10-12 |
1.00 ´ 10-7 |
|
GTGACCT |
0.09 |
3.96 ´ 10-11 |
6.48 ´ 10-7 |
|
GACCTT |
0.23 |
1.39 ´ 10-9 |
5.71 ´ 10-6 |
|
ATGGCGGC |
0.05 |
2.59 ´ 10-10 |
1.70 ´ 10-5 |
|
GACCTTG |
0.08 |
1.23 ´ 10-9 |
2.01 ´ 10-5 |
|
TTCCGG |
0.24 |
1.79 ´ 10-8 |
7.34 ´ 10-5 |
|
CTTCCGGC |
0.04 |
1.66 ´ 10-9 |
1.09 ´ 10-4 |
|
TGACCT |
0.26 |
3.58 ´ 10-8 |
1.47 ´ 10-4 |
|
CCTTCCG |
0.08 |
1.67 ´ 10-8 |
2.74 ´ 10-4 |
|
AAGATGGCG |
0.03 |
1.17 ´ 10-9 |
3.07 ´ 10-4 |
|
ATGGCGGCG |
0.03 |
1.28 ´ 10-9 |
3.37 ´ 10-4 |
|
CCGGGG |
0.38 |
1.03 ´ 10-7 |
4.23 ´ 10-4 |
|
GGCGGG |
0.52 |
1.33 ´ 10-7 |
5.47 ´ 10-4 |
|
GTGACCTTG |
0.02 |
4.87 ´ 10-9 |
1.28 ´ 10-3 |
|
ACTTCCG |
0.08 |
9.04 ´ 10-8 |
1.48 ´ 10-3 |
|
AGATGGCG |
0.04 |
3.79 ´ 10-8 |
2.48 ´ 10-3 |
|
ATGGCGG |
0.10 |
1.66 ´ 10-7 |
2.72 ´ 10-3 |
|
AGATGGCGG |
0.02 |
1.11 ´ 10-8 |
2.90 ´ 10-3 |
|
AGGTCA |
0.25 |
1.04 ´ 10-6 |
4.25 ´ 10-3 |
|
CCCGCC |
0.47 |
1.29 ´ 10-6 |
5.30 ´ 10-3 |
|
CGGTGA |
0.20 |
1.38 ´ 10-6 |
5.66 ´ 10-3 |
|
GGCGGC |
0.43 |
1.55 ´ 10-6 |
6.34 ´ 10-3 |
|
GCGGCG |
0.39 |
1.83 ´ 10-6 |
7.51 ´ 10-3 |
|
TTCCGCT |
0.05 |
4.87 ´ 10-7 |
7.98 ´ 10-3 |
|
GCGTCA |
0.11 |
2.30 ´ 10-6 |
9.41 ´ 10-3 |
|
ACTTCCGG |
0.04 |
1.89 ´ 10-7 |
1.24 ´ 10-2 |
|
TTCCGC |
0.18 |
3.93 ´ 10-6 |
1.61 ´ 10-2 |
|
CGTCCT |
0.17 |
4.00 ´ 10-6 |
1.64 ´ 10-2 |
|
CTGCGG |
0.35 |
4.81 ´ 10-6 |
1.97 ´ 10-2 |
|
CGGGGC |
0.43 |
4.86 ´ 10-6 |
1.99 ´ 10-2 |
|
GCCGGC |
0.33 |
6.24 ´ 10-6 |
2.56 ´ 10-2 |
|
CCGGCT |
0.27 |
6.34 ´ 10-6 |
2.60 ´ 10-2 |
|
GACCTTCC |
0.03 |
4.71 ´ 10-7 |
3.09 ´ 10-2 |
|
GGGCGG |
0.51 |
8.43 ´ 10-6 |
3.45 ´ 10-2 |
|
CCGGCTT |
0.07 |
2.15 ´ 10-6 |
3.52 ´ 10-2 |
|
CGGAAGT |
0.08 |
2.22 ´ 10-6 |
3.63 ´ 10-2 |
|
TGGCGGC |
0.15 |
2.52 ´ 10-6 |
4.13 ´ 10-2 |
|
|
AAGATGGC |
0.05 |
6.97 ´ 10-7 |
4.57 ´ 10-2 |
motifADE was performed by using the masked promoter database, consisting of regions of the promoters aligned and conserved between mouse and human. Motifs achieving a Bonferroni-corrected P value < 0.05 are shown.