Addtl. Table 3. Binary Tract frequencies in s. cerevisiae Chromosome 4. (view in an 132 field window) THIS IS PROGRAM TRACTS(PUR), UNIX VERSION 5.5 2/96. By G. Yagil. cf. DNA SEQUENCE 1:157-172 (1991). DATA FILE: 14/1/2003 rerun of yeast chromosome4 - noS, tabs with summary, Gformat LSTB,NLSTB,LENSEQ 0 1531929 1531929 1.SQ S. cerevisiae chromosome IV, complete Clone = _001136 FIRST BASE is 1; LAST BASE is 1531929 SEQUENCE LENGTH= 1531929 IN SECTION(S) OF 1531929 REGION OF 1531929 BASES MODE is NOT alternating. LEVEL = 100% ALT= W W tracts ---------- TRACTS ----------- ---------- BASES ----------- ------- BASES GE. -------- LENGTH W (S) W EXPCTD DIFF FOUND EXPECTD RATIO FOUND EXPCTD RATIO 1 133912 224206 133912 136681.375 -2769. 133912 136681.38 0.980 951231 0.951E+06 1.00 2 94163 91359 94163 84870.492 9293. 188326 169740.98 1.11 817319 0.506E+06 1.62 3 51815 30657 51815 52699.211 -884. 155445 158097.62 0.983 628993 0.400E+06 1.57 4 32620 11155 32620 32722.875 -103. 130480 130891.50 0.997 473548 0.302E+06 1.57 5 20427 4173 20427 20318.834 108. 102135 101594.17 1.01 343068 0.221E+06 1.55 6 11483 1480 11483 12616.712 -1134. 68898 75700.27 0.910 240933 0.158E+06 1.53 7 7222 578 7222 7834.180 -612. 50554 54839.26 0.922 172035 0.111E+06 1.55 8 4701 221 4701 4864.530 -164. 37608 38916.24 0.966 121481 0.768E+05 1.58 9 2795 88 2795 3020.566 -226. 25155 27185.09 0.925 83873 0.526E+05 1.59 10 1784 47 1784 1875.580 -92. 17840 18755.80 0.951 58718 0.358E+05 1.64 11 1100 17 1100 1164.617 -65. 12100 12810.78 0.945 40878 0.241E+05 1.70 12 640 11 640 723.153 -83. 7680 8677.84 0.885 28778 0.162E+05 1.78 13 409 0 409 449.032 -40. 5317 5837.42 0.911 21098 0.108E+05 1.96 14 260 2 260 278.821 -19. 3640 3903.49 0.932 15781 0.714E+04 2.21 15 196 1 196 173.130 23. 2940 2596.95 1.13 12141 0.472E+04 2.57 16 123 0 123 107.503 15. 1968 1720.05 1.14 9201 0.311E+04 2.96 17 81 0 81 66.752 14. 1377 1134.79 1.21 7233 0.204E+04 3.55 18 57 0 57 41.449 16. 1026 746.08 1.38 5856 0.133E+04 4.39 19 45 0 45 25.737 19. 855 489.01 1.75 4830 870. 5.55 20 42 0 42 15.981 26. 840 319.62 2.63 3975 566. 7.02 21 27 0 27 9.923 17. 567 208.39 2.72 3135 368. 8.52 22 14 0 14 6.162 8. 308 135.56 2.27 2568 239. 10.8 23 9 0 9 3.826 5. 207 88.00 2.35 2260 154. 14.6 24 15 0 15 2.376 13. 360 57.02 6.31 2053 99.8 20.6 25 10 0 10 1.475 9. 250 36.88 6.78 1693 64.4 26.3 26 9 0 9 0.916 8. 234 23.82 9.83 1443 41.5 34.8 27 7 0 7 0.569 6. 189 15.36 12.3 1209 26.7 45.3 28 3 0 3 0.353 3. 84 9.89 8.49 1020 17.1 59.5 29 1 0 1 0.219 1. 29 6.36 4.56 936 11.0 85.0 30 4 0 4 0.136 4. 120 4.09 29.4 907 7.06 129. 31 2 0 2 0.085 2. 62 2.62 23.7 787 4.52 174. 32 1 0 1 0.053 1. 32 1.68 19.0 725 2.89 251. 33 3 0 3 0.033 3. 99 1.08 92.0 693 1.85 375. 34 2 0 2 0.020 2. 68 0.69 98.8 594 1.18 503. 35 1 0 1 0.013 1. 35 0.44 79.6 526 0.754 697. 36 2 0 2 0.008 2. 72 0.28 256. 491 0.481 0.102E+04 37 1 0 1 0.005 1. 37 0.18 206. 419 0.307 0.137E+04 38 3 0 3 0.003 3. 114 0.11 997. 382 0.195 0.196E+04 39 1 0 1 0.002 1. 39 0.07 535. 268 0.124 0.215E+04 40 2 0 2 0.001 2. 80 0.05 0.172E+04 229 0.791E-01 0.289E+04 64 1 0 1 0.000 1. 64 0.00 0.799E+08 149 0.135E-05 0.111E+09 85 1 0 1 0.000 1. 85 0.00 0.177E+13 85 0.801E-10 0.106E+13 SUM 363994 951231 (:2 = 475615.5) DEVIATION: 23.47% %G,C = 0.379 Summary for AT tracts .GE.10 at level 100% CODING INTERCODING INTRONS TOTAL BASES TOTAL: 1159895 364044 7990 1531929 FOUND: 462 360 10 832 EXPECTED: 35756.32 8497.05 186.49 35756.32 RATIO: 0.01 0.04 0.05 0.02 K.M Tracts ---------- TRACTS ----------- ---------- BASES ----------- ------- BASES GE. -------- LENGTH M K K+M EXPCTD DIFF FOUND EXPECTD RATIO FOUND EXPCTD RATIO 1 173099 172951 346050 382982.250 -36932. 346050 382982.25 0.904 1531929 0.153E+07 1.00 2 88438 89182 177620 191491.109 -13871. 355240 382982.19 0.928 1185879 0.115E+07 1.03 3 46260 45828 92088 95745.562 -3658. 276264 287236.69 0.962 830639 0.766E+06 1.08 4 24946 24825 49771 47872.777 1898. 199084 191491.09 1.04 554375 0.479E+06 1.16 5 13411 13408 26819 23936.391 2883. 134095 119681.95 1.12 355291 0.287E+06 1.24 6 7017 6809 13826 11968.197 1858. 82956 71809.19 1.16 221196 0.168E+06 1.32 7 3827 3841 7668 5984.099 1684. 53676 41888.69 1.28 138240 0.957E+05 1.44 8 2014 2105 4119 2992.050 1127. 32952 23936.40 1.38 84564 0.539E+05 1.57 9 1057 1081 2138 1496.025 642. 19242 13464.23 1.43 51612 0.299E+05 1.72 10 583 602 1185 748.013 437. 11850 7480.13 1.58 32370 0.165E+05 1.97 11 323 342 665 374.006 291. 7315 4114.07 1.78 20520 0.898E+04 2.29 12 181 187 368 187.003 181. 4416 2244.04 1.97 13205 0.486E+04 2.72 13 94 104 198 93.502 104. 2574 1215.52 2.12 8789 0.262E+04 3.36 14 75 74 149 46.751 102. 2086 654.51 3.19 6215 0.140E+04 4.43 15 40 31 71 23.375 48. 1065 350.63 3.04 4129 748. 5.52 16 26 18 44 11.688 32. 704 187.00 3.76 3064 397. 7.71 17 19 20 39 5.844 33. 663 99.35 6.67 2360 210. 11.2 18 12 8 20 2.922 17. 360 52.59 6.84 1697 111. 15.3 19 6 5 11 1.461 10. 209 27.76 7.53 1337 58.4 22.9 20 3 6 9 0.730 8. 180 14.61 12.3 1128 30.7 36.8 21 3 2 5 0.365 5. 105 7.67 13.7 948 16.1 59.0 22 1 4 5 0.183 5. 110 4.02 27.4 843 8.40 100. 23 1 0 1 0.091 1. 23 2.10 11.0 733 4.38 167. 24 0 2 2 0.046 2. 48 1.10 43.8 710 2.28 311. 25 0 2 2 0.023 2. 50 0.57 87.6 662 1.19 558. 26 4 0 4 0.011 4. 104 0.30 350. 612 0.616 993. 27 1 1 2 0.006 2. 54 0.15 350. 508 0.320 0.159E+04 28 0 2 2 0.003 2. 56 0.08 701. 454 0.166 0.274E+04 34 0 1 1 0.000 1. 34 0.00 0.224E+05 398 0.312E-02 0.128E+06 35 0 1 1 0.000 1. 35 0.00 0.449E+05 364 0.161E-02 0.227E+06 36 1 0 1 0.000 1. 36 0.00 0.897E+05 329 0.825E-03 0.399E+06 41 0 1 1 0.000 1. 41 0.00 0.287E+07 293 0.293E-04 0.100E+08 97 0 1 1 0.000 1. 97 0.00 0.207E+24 252 0.886E-21 0.284E+24 155 1 0 1 0.000 1. 155 0.00 0. 155 0. 0. SUM 722887 1531929 (:2 = 765964.5) DEVIATION: 5.62% %G,T = 0.500 Summary for AC tracts .GE.10 at level 100% CODING INTERCODING INTRONS TOTAL BASES TOTAL: 1159895 364044 7990 1531929 FOUND: 21209 11004 157 32370 EXPECTED: 12459.82 3910.63 85.83 16456.29 RATIO: 1.70 2.81 1.83 1.97 R.Y Tracts ---------- TRACTS ----------- ---------- BASES ----------- ------- BASES GE. -------- LENGTH Y R R+Y EXPCTD DIFF FOUND EXPECTD RATIO FOUND EXPCTD RATIO 1 170226 170111 340337 382979.250 -42642. 340337 382979.25 0.889 1531929 0.153E+07 1.00 2 89745 88852 178597 191488.141 -12891. 357194 382976.28 0.933 1191592 0.115E+07 1.04 3 41591 41629 83220 95744.070 -12524. 249660 287232.22 0.869 834398 0.766E+06 1.09 4 22516 22702 45218 47872.406 -2654. 180872 191489.62 0.945 584738 0.479E+06 1.22 5 13490 13655 27145 23936.578 3208. 135725 119682.89 1.13 403866 0.287E+06 1.41 6 7252 7441 14693 11968.569 2724. 88158 71811.41 1.23 268141 0.168E+06 1.60 7 3993 4163 8156 5984.472 2172. 57092 41891.30 1.36 179983 0.958E+05 1.88 8 2425 2545 4970 2992.353 1978. 39760 23938.82 1.66 122891 0.539E+05 2.28 9 1374 1412 2786 1496.247 1290. 25074 13466.22 1.86 83131 0.299E+05 2.78 10 805 924 1729 748.164 981. 17290 7481.64 2.31 58057 0.165E+05 3.53 11 526 561 1087 374.106 713. 11957 4115.16 2.91 40767 0.898E+04 4.54 12 340 318 658 187.066 471. 7896 2244.79 3.52 28810 0.486E+04 5.92 13 221 229 450 93.540 356. 5850 1216.02 4.81 20914 0.262E+04 7.98 14 144 113 257 46.774 210. 3598 654.84 5.49 15064 0.140E+04 10.7 15 102 106 208 23.389 185. 3120 350.84 8.89 11466 749. 15.3 16 54 56 110 11.696 98. 1760 187.13 9.41 8346 398. 21.0 17 47 35 82 5.849 76. 1394 99.43 14.0 6586 211. 31.3 18 30 25 55 2.925 52. 990 52.64 18.8 5192 111. 46.7 19 25 27 52 1.462 51. 988 27.79 35.6 4202 58.5 71.8 20 12 18 30 0.731 29. 600 14.63 41.0 3214 30.7 105. 21 10 11 21 0.366 21. 441 7.68 57.4 2614 16.1 162. 22 7 11 18 0.183 18. 396 4.02 98.4 2173 8.41 258. 23 3 2 5 0.091 5. 115 2.10 54.7 1777 4.39 405. 24 3 3 6 0.046 6. 144 1.10 131. 1662 2.29 727. 25 4 3 7 0.023 7. 175 0.57 306. 1518 1.19 0.128E+04 26 6 6 12 0.011 12. 312 0.30 0.105E+04 1343 0.618 0.217E+04 27 3 2 5 0.006 5. 135 0.15 874. 1031 0.320 0.322E+04 28 3 0 3 0.003 3. 84 0.08 0.105E+04 896 0.166 0.540E+04 29 4 0 4 0.001 4. 116 0.04 0.280E+04 812 0.859E-01 0.946E+04 30 1 3 4 0.001 4. 120 0.02 0.559E+04 696 0.444E-01 0.157E+05 31 1 0 1 0.000 1. 31 0.01 0.279E+04 576 0.229E-01 0.251E+05 32 0 2 2 0.000 2. 64 0.01 0.112E+05 545 0.118E-01 0.461E+05 33 1 1 2 0.000 2. 66 0.00 0.223E+05 481 0.609E-02 0.790E+05 35 2 2 4 0.000 4. 140 0.00 0.179E+06 415 0.161E-02 0.257E+06 36 1 0 1 0.000 1. 36 0.00 0.893E+05 275 0.829E-03 0.332E+06 41 0 1 1 0.000 1. 41 0.00 0.285E+07 239 0.294E-04 0.812E+07 45 1 0 1 0.000 1. 45 0.00 0.456E+08 198 0.202E-05 0.981E+08 47 0 1 1 0.000 1. 47 0.00 0.182E+09 153 0.527E-06 0.290E+09 51 1 0 1 0.000 1. 51 0.00 0.291E+10 106 0.357E-07 0.297E+10 55 0 1 1 0.000 1. 55 0.00 0.465E+11 55 0.241E-08 0.228E+11 SUM 709940 1531929 (:2 = 765964.5) DEVIATION: 7.31% %A,G = 0.501 Summary for RY tracts .GE.10 at level 100% CODING INTERCODING INTRONS TOTAL BASES TOTAL: 1159895 364044 7990 1531929 FOUND: 34438 23297 322 58057 EXPECTED: 12463.40 3911.75 85.85 16461.00 RATIO: 2.76 5.96 3.75 3.53