Addtl. Table 6 - masked regions in contig 3.45
==================================================
file name: 3.45sq
sequences:            2
total length:   3450497 bp  (3450397 bp excl N-runs)
GC level:         51.49 %
bases masked:   1324529 bp ( 38.39 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:             1576       393296 bp    11.40 %
      ALUs         1367       368970 bp    10.69 %
      MIRs          209        24326 bp     0.70 %

LINEs:              801       584837 bp    16.95 %
      LINE1         657       552042 bp    16.00 %
      LINE2         123        29885 bp     0.87 %
      L3/CR1         21         2910 bp     0.08 %

LTR elements:       595       266751 bp     7.73 %
      MaLRs         311       112851 bp     3.27 %
      ERVL           74        27757 bp     0.80 %
      ERV_classI    191       112591 bp     3.26 %
      ERV_classII    19        13552 bp     0.39 %

DNA elements:       217        67105 bp     1.94 %
      MER1_type     131        28894 bp     0.84 %
      MER2_type      50        29417 bp     0.85 %

Unclassified:         6        10274 bp     0.30 %

Total interspersed repeats:  1322263 bp    38.32 %


Small RNA:            7          883 bp     0.03 %

Satellites:           1         1926 bp     0.06 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element


The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/07/2001 , default mode
run with cross_match version 0.960731
RepBase Update <6.3, vs <05152001