Detecting Local Haplotype Sharing and Haplotype Association

Files in this data supplement:

  • Supporting Information: Table S1 and Figures S1-S6 (PDF, 3 MB)
  • Table S1: Numbers of samples and SNPs in the final analysis. (PDF, 26 KB)
  • Figure S1: Pairwise plots of top 6 eigenvectors, their histogram, and all eigenvalues (scaled according to the largest eigenvalue) of rheumatoid arthritis data. (PDF, 367 KB)
  • Figure S2: Cluster plot for SNP rs7154773 for two controls and five disease cases. (PDF, 252 KB)
  • Figure S3: Cluster plots for core SNPs of orphan signals. (PDF, 772 KB)
  • Figure S4: Cluster plots for three SNPs in gene MCF2L2 (on chromosome 3), which shows a strong association with Crohn's disease. (PDF, 827 KB)
  • Figure S5: Cluster plots for three SNPs in gene CLSNT2 (on chromosome 3), which shows a strong association with rheumatoid arthritis. (PDF, 811 KB)
  • Figure S6: Cluster plots of two SNPs near gene NID2 (on chromosome 14), which shows a strong association with rheumatoid arthritis. (PDF, 588 KB)