{"text_format":"2","workbook":"xlsx","n_sheets":3,"sheets":["4-fold 3h","4-fold 9h","4-fold 24h"],"not_rendered":{"charts":0,"images":0,"macros":0,"external_links":0,"defined_names":0,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"run_cost":"one","rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"4-fold 3h","index":0,"n_rows":142,"n_cols":5,"rows_kept":142,"cut":false,"hidden":false,"merged":[]}
["Table S2. List of annotated putative lncRNAs that show a reproducible, statistically significant (p-value<0.05) change of 4 fold or more in expression level compared to controls"]
["This is the list of upregulated lncRNAs at 3 hour time point. Please see the other worksheets (tabs below) for the 24 and 9 hour time points. "]
["As many lncRNAs show a very low level of expression, we did not filter the results that had a low read count, as long as the change between IFN+ and IFN- groups was reproducible. "]
["lncRNA ID and locus (length of the region showing statistically significant changes in read density)","Chr","Start","End","Fold Difference (log 2)"]
["ENSG00000272512.1 Chr1:931346-933431(2 kbp)",1,931346,933431,3.91241]
["ENSG00000224969.1 Chr1:947377-948573(1.1 kbp)",1,947377,948573,3.3442707]
["ENSG00000272141.1 Chr1:1104737-1105723(987 bp)",1,1104737,1105723,2.226026]
["ENSG00000271746.1 Chr1:6453615-6454451(837 bp)",1,6453615,6454451,2.3246043]
["ENSG00000230679.1 Chr1:8938894-8939953(1 kbp)",1,8938894,8939953,2.778294]
["ENSG00000226849.1 Chr1:11128528-11133154(4.6 kbp)",1,11128528,11133154,2.7381864]
["ENSG00000223643.2 Chr1:17177752-17179624(1.8 kbp)",1,17177752,17179624,2.2549706]
["ENSG00000269971.1 Chr1:28100369-28100552(184 bp)",1,28100369,28100552,2.4991484]
["ENSG00000270031.1 Chr1:28146494-28146852(359 bp)",1,28146494,28146852,2.766936]
["ENSG00000264078.1 Chr1:32110295-32114972(4.6 kbp)",1,32110295,32114972,2.0234168]
["ENSG00000271554.1 Chr1:36457710-36479231(21.5 kbp)",1,36457710,36479231,3.949245]
["ENSG00000237568.1 Chr1:89726265-89735437(9.1 kbp)",1,89726265,89735437,2.311819]
["ENSG00000234225.2 Chr1:146473490-146475177(1.6 kbp)",1,146473490,146475177,2.2391891]
["ENSG00000268544.1 Chr1:149575345-149575767(423 bp)",1,149575345,149575767,3.2480986]
["ENSG00000223525.1 Chr1:174866095-174867133(1 kbp)",1,174866095,174867133,3.3376815]
["ENSG00000260938.1 Chr1:178449742-178450341(600 bp)",1,178449742,178450341,2.492988]
["ENSG00000260800.1 Chr1:202099159-202100553(1.3 kbp)",1,202099159,202100553,2.2576165]
["ENSG00000225964.1 Chr2:6968645-6980595(11.9 kbp)",2,6968645,6980595,5.024383]
["ENSG00000232973.6 Chr2:38302791-38408997(106.2 kbp)",2,38302791,38408997,2.3282275]
["ENSG00000270462.1 Chr2:75924709-75925122(414 bp)",2,75924709,75925122,2.072981]
["ENSG00000225765.1 Chr2:105028685-105030466(1.7 kbp)",2,105028685,105030466,3.0705347]
["ENSG00000235949.1 Chr2:155552974-155554329(1.3 kbp)",2,155552974,155554329,2.0206609]
["ENSG00000222043.2 Chr2:178129087-178130243(1.1 kbp)",2,178129087,178130243,2.7017097]
["ENSG00000270659.1 Chr2:214017694-214018383(690 bp)",2,214017694,214018383,2.0288424]
["ENSG00000230695.1 Chr2:216300976-216301715(740 bp)",2,216300976,216301715,2.1449225]
["ENSG00000261379.1 Chr2:227668752-227669777(1 kbp)",2,227668752,227669777,2.2189677]
["ENSG00000229915.1 Chr2:239335718-239336370(653 bp)",2,239335718,239336370,2.0491145]
["ENSG00000272182.1 Chr3:58413982-58414542(561 bp)",3,58413982,58414542,2.5576649]
["ENSG00000244265.1 Chr3:150479724-150480325(602 bp)",3,150479724,150480325,3.194027]
["ENSG00000270135.1 Chr3:169511283-169511754(472 bp)",3,169511283,169511754,3.063001]
["ENSG00000269728.1 Chr3:179113877-179115965(2 kbp)",3,179113877,179115965,2.3646488]
["ENSG00000232065.1 Chr3:196358369-196359458(1 kbp)",3,196358369,196359458,2.079469]
["ENSG00000248810.1 Chr4:142240604-142253772(13.1 kbp)",4,142240604,142253772,2.699155]
["ENSG00000270302.1 Chr4:153229435-153231135(1.7 kbp)",4,153229435,153231135,2.0808718]
["ENSG00000251584.1 Chr4:175457791-175461935(4.1 kbp)",4,175457791,175461935,2.4849474]
["ENSG00000249404.1 Chr5:23013157-23014636(1.4 kbp)",5,23013157,23014636,2.9039145]
["ENSG00000215068.3 Chr5:43041677-43045492(3.8 kbp)",5,43041677,43045492,2.8009357]
["ENSG00000250615.1 Chr5:76369706-76370345(640 bp)",5,76369706,76370345,2.312582]
["ENSG00000248559.1 Chr5:133735186-133737612(2.4 kbp)",5,133735186,133737612,2.650894]
["ENSG00000272463.1 Chr6:708592-711405(2.8 kbp)",6,708592,711405,3.1460686]
["ENSG00000224846.1 Chr6:2989960-2999368(9.4 kbp)",6,2989960,2999368,2.4018936]
["ENSG00000225102.1 Chr6:11990576-11992245(1.6 kbp)",6,11990576,11992245,2.0788448]
["ENSG00000272236.1 Chr6:29719742-29719984(243 bp)",6,29719742,29719984,2.8898532]
["ENSG00000224666.2 Chr6:36354608-36359771(5.1 kbp)",6,36354608,36359771,3.3817737]
["ENSG00000270761.1 Chr6:47444979-47445308(330 bp)",6,47444979,47445308,2.0852976]
["ENSG00000271367.1 Chr6:53214956-53215503(548 bp)",6,53214956,53215503,2.054142]
["ENSG00000232031.1 Chr6:82434439-82446070(11.6 kbp)",6,82434439,82446070,2.9604378]
["ENSG00000272189.1 Chr6:136871799-136873692(1.8 kbp)",6,136871799,136873692,2.2689872]
["ENSG00000225532.1 Chr6:171045261-171046865(1.6 kbp)",6,171045261,171046865,2.4334142]
["ENSG00000233517.1 Chr7:29026644-29028515(1.8 kbp)",7,29026644,29028515,2.000233]
["ENSG00000260070.1 Chr7:36359384-36360088(705 bp)",7,36359384,36360088,2.590171]
["ENSG00000203446.2 Chr7:40577726-40586527(8.8 kbp)",7,40577726,40586527,3.2167063]
["ENSG00000249595.1 Chr7:74856621-74857439(819 bp)",7,74856621,74857439,3.420379]
["ENSG00000231794.3 Chr7:134883153-134887108(3.9 kbp)",7,134883153,134887108,2.4677796]
["ENSG00000254370.1 Chr8:28273041-28277572(4.5 kbp)",8,28273041,28277572,2.0046916]
["ENSG00000272076.1 Chr8:52722670-52723241(572 bp)",8,52722670,52723241,2.039909]
["ENSG00000237807.3 Chr8:54427731-54436491(8.7 kbp)",8,54427731,54436491,2.3297033]
["ENSG00000272010.1 Chr8:66504085-66504707(623 bp)",8,66504085,66504707,2.0611815]
["ENSG00000270077.1 Chr8:98156398-98156951(554 bp)",8,98156398,98156951,2.1979353]
["ENSG00000271882.1 Chr8:102220376-102220786(411 bp)",8,102220376,102220786,2.4158454]
["ENSG00000253513.1 Chr8:126009227-126010440(1.2 kbp)",8,126009227,126010440,2.2640874]
["ENSG00000254286.1 Chr8:127570120-127725660(155.5 kbp)",8,127570120,127725660,2.223415]
["ENSG00000253264.1 Chr8:128084939-128094466(9.5 kbp)",8,128084939,128094466,2.133586]
["ENSG00000181097.5 Chr8:144778324-144780583(2.2 kbp)",8,144778324,144780583,2.094728]
["ENSG00000235387.1 Chr9:35909480-35911683(2.2 kbp)",9,35909480,35911683,2.3985326]
["ENSG00000226047.1 Chr9:109879740-109883986(4.2 kbp)",9,109879740,109883986,2.0958016]
["ENSG00000236514.1 Chr10:38146668-38148038(1.3 kbp)",10,38146668,38148038,2.1899219]
["ENSG00000231964.1 Chr10:45940018-45948569(8.5 kbp)",10,45940018,45948569,2.0614593]
["ENSG00000235939.1 Chr10:50627323-50680949(53.6 kbp)",10,50627323,50680949,2.0927758]
["ENSG00000269926.1 Chr10:74034673-74035738(1 kbp)",10,74034673,74035738,3.059277]
["ENSG00000271933.1 Chr10:85898176-85900338(2.1 kbp)",10,85898176,85900338,2.892044]
["ENSG00000203886.4 Chr10:104592478-104594273(1.7 kbp)",10,104592478,104594273,2.7642262]
["ENSG00000231233.1 Chr10:106111349-106113333(1.9 kbp)",10,106111349,106113333,2.7834501]
["ENSG00000233547.1 Chr10:114710405-114711634(1.2 kbp)",10,114710405,114711634,2.4980712]
["ENSG00000255089.1 Chr11:321991-322426(436 bp)",11,321991,322426,2.359969]
["ENSG00000254739.1 Chr11:528907-529659(753 bp)",11,528907,529659,2.4632754]
["ENSG00000205866.2 Chr11:1686827-1689086(2.2 kbp)",11,1686827,1689086,3.4994097]
["ENSG00000255355.1 Chr11:59436785-59443514(6.7 kbp)",11,59436785,59443514,3.1891544]
["ENSG00000256690.1 Chr11:62599706-62601515(1.8 kbp)",11,62599706,62601515,3.3576562]
["ENSG00000260233.2 Chr11:65337131-65337744(614 bp)",11,65337131,65337744,2.008833]
["ENSG00000254721.1 Chr11:70052397-70053496(1.1 kbp)",11,70052397,70053496,3.204066]
["ENSG00000254691.1 Chr11:77561650-77562557(908 bp)",11,77561650,77562557,2.4599211]
["ENSG00000236267.1 Chr11:116683920-116684719(800 bp)",11,116683920,116684719,2.0657496]
["ENSG00000257829.1 Chr12:52700400-52702155(1.7 kbp)",12,52700400,52702155,2.910137]
["ENSG00000257167.2 Chr12:98906751-98910200(3.4 kbp)",12,98906751,98910200,2.5006049]
["ENSG00000256262.1 Chr12:109490155-109491757(1.6 kbp)",12,109490155,109491757,2.1415572]
["ENSG00000270005.1 Chr12:124420169-124420753(585 bp)",12,124420169,124420753,2.1598842]
["ENSG00000269997.1 Chr12:124450624-124451176(553 bp)",12,124450624,124451176,2.8573246]
["ENSG00000230058.1 Chr13:40918094-40924440(6.3 kbp)",13,40918094,40924440,2.0340939]
["ENSG00000229521.2 Chr13:77654646-77655325(680 bp)",13,77654646,77655325,2.3605297]
["ENSG00000258651.1 Chr14:39572344-39573016(673 bp)",14,39572344,39573016,2.703483]
["ENSG00000259687.1 Chr14:75761107-75763341(2.2 kbp)",14,75761107,75763341,2.2725434]
["ENSG00000259694.1 Chr15:84839930-84841946(2 kbp)",15,84839930,84841946,2.0459096]
["ENSG00000259551.1 Chr15:85043609-85045612(2 kbp)",15,85043609,85045612,2.0422006]
["ENSG00000258551.1 Chr15:91951938-92148441(196.5 kbp)",15,91951938,92148441,3.215593]
["ENSG00000260293.1 Chr16:2526559-2527062(504 bp)",16,2526559,2527062,2.2212133]
["ENSG00000261481.1 Chr16:8963108-8963889(782 bp)",16,8963108,8963889,2.2082891]
["ENSG00000261685.2 Chr16:50679720-50683160(3.4 kbp)",16,50679720,50683160,2.1829472]
["ENSG00000259827.1 Chr16:56716382-56721719(5.3 kbp)",16,56716382,56721719,3.065631]
["ENSG00000262514.1 Chr16:68233698-68234884(1.1 kbp)",16,68233698,68234884,2.9748886]
["ENSG00000263301.1 Chr17:7342478-7346646(4.1 kbp)",17,7342478,7346646,2.7598054]
["ENSG00000269947.1 Chr17:8181081-8181754(674 bp)",17,8181081,8181754,3.7476625]
["ENSG00000239203.1 Chr17:16330788-16332033(1.2 kbp)",17,16330788,16332033,2.7048216]
["ENSG00000266490.1 Chr17:29119390-29119851(462 bp)",17,29119390,29119851,3.2790613]
["ENSG00000264083.1 Chr17:30757986-30759860(1.8 kbp)",17,30757986,30759860,2.0005891]
["ENSG00000264558.1 Chr17:45759783-45760049(267 bp)",17,45759783,45760049,3.654394]
["ENSG00000266473.1 Chr17:65240953-65241922(970 bp)",17,65240953,65241922,2.3931901]
["ENSG00000267194.1 Chr17:67547499-67550002(2.5 kbp)",17,67547499,67550002,2.1190166]
["ENSG00000266036.1 Chr17:72743458-72745051(1.5 kbp)",17,72743458,72745051,2.1842668]
["ENSG00000267078.1 Chr17:74565874-74567322(1.4 kbp)",17,74565874,74567322,2.29535]
["ENSG00000262223.2 Chr17:79349801-79359160(9.3 kbp)",17,79349801,79359160,2.0556111]
["ENSG00000262831.1 Chr17:79801041-79801834(794 bp)",17,79801041,79801834,2.0706577]
["ENSG00000260011.2 Chr17:80338986-80340566(1.5 kbp)",17,80338986,80340566,2.3801725]
["ENSG00000264695.1 Chr18:22069339-22071044(1.7 kbp)",18,22069339,22071044,2.0815837]
["ENSG00000266521.1 Chr18:29076608-29077158(551 bp)",18,29076608,29077158,2.0533245]
["ENSG00000262477.1 Chr18:29992145-29993199(1 kbp)",18,29992145,29993199,2.2310467]
["ENSG00000267980.1 Chr19:4363786-4364637(852 bp)",19,4363786,4364637,2.4575748]
["ENSG00000267212.1 Chr19:12895353-12895915(563 bp)",19,12895353,12895915,2.1938937]
["ENSG00000269720.1 Chr19:17502238-17503093(856 bp)",19,17502238,17503093,4.673365]
["ENSG00000269053.1 Chr19:17530114-17530583(470 bp)",19,17530114,17530583,2.4835134]
["ENSG00000266976.1 Chr19:29097595-29106136(8.5 kbp)",19,29097595,29106136,3.0669758]
["ENSG00000269303.1 Chr19:35489137-35491074(1.9 kbp)",19,35489137,35491074,2.3630517]
["ENSG00000267672.1 Chr19:37582243-37583466(1.2 kbp)",19,37582243,37583466,3.2654788]
["ENSG00000268047.1 Chr19:50356144-50358224(2 kbp)",19,50356144,50358224,2.0808125]
["ENSG00000270792.1 Chr20:10653576-10975572(321.9 kbp)",20,10653576,10975572,2.1461277]
["ENSG00000271784.1 Chr20:45318298-45318928(631 bp)",20,45318298,45318928,2.0614357]
["ENSG00000241624.1 Chr20:62198794-62199958(1.1 kbp)",20,62198794,62199958,3.2649775]
["ENSG00000270093.1 Chr21:18015848-18017384(1.5 kbp)",21,18015848,18017384,2.4427834]
["ENSG00000234883.2 Chr21:26934221-26947480(13.2 kbp)",21,26934221,26947480,2.406485]
["ENSG00000261610.1 Chr21:33632115-33633896(1.7 kbp)",21,33632115,33633896,2.106914]
["ENSG00000224388.1 Chr21:42552024-42552553(530 bp)",21,42552024,42552553,2.1457222]
["ENSG00000228318.1 Chr21:42813321-42814669(1.3 kbp)",21,42813321,42814669,2.806585]
["ENSG00000261202.1 Chr22:40439072-40440534(1.4 kbp)",22,40439072,40440534,2.2984545]
["ENSG00000226179.1 ChrX:281725-282586(862 bp)","X",281725,282586,3.2917423]
["ENSG00000259640.1 ChrX:83755033-83757461(2.4 kbp)","X",83755033,83757461,2.2867093]
["ENSG00000225012.1 ChrX:88678737-88701982(23.2 kbp)","X",88678737,88701982,2.1041408]
["ENSGR0000226179.1 ChrY:231725-232586(862 bp)","Y",231725,232586,3.2917423]
["ENSG00000231535.1 ChrY:2870953-2970313(99.3 kbp)","Y",2870953,2970313,2.5349872]

{"sheet":"4-fold 9h","index":1,"n_rows":121,"n_cols":5,"rows_kept":121,"cut":false,"hidden":false,"merged":[]}
["Table S2. List of annotated putative lncRNAs that show a reproducible, statistically significant change of 4 fold or more in expression level compared to controls"]
["This is the list of upregulated lncRNAs at 9 hour time point. Please see the other worksheets (tabs below) for the 3 and 24 hour time points. "]
["As many lncRNAs show a very low level of expression, we did not filter the results that had a low read count, as long as the change between IFN+ and IFN- groups was reproducible. "]
["lncRNA ID and locus (length of the region showing statistically significant changes in read density)","Chr","Start","End","Fold Difference (log 2)"]
["ENSG00000272141.1 Chr1:1104737-1105723(987 bp)",1,1104737,1105723,2.0685558]
["ENSG00000271746.1 Chr1:6453615-6454451(837 bp)",1,6453615,6454451,2.3039343]
["ENSG00000230679.1 Chr1:8938894-8939953(1 kbp)",1,8938894,8939953,3.1711893]
["ENSG00000226849.1 Chr1:11128528-11133154(4.6 kbp)",1,11128528,11133154,2.4632401]
["ENSG00000272432.1 Chr1:25574328-25574812(485 bp)",1,25574328,25574812,2.229348]
["ENSG00000271554.1 Chr1:36457710-36479231(21.5 kbp)",1,36457710,36479231,2.6820335]
["ENSG00000226957.1 Chr1:46512490-46514040(1.5 kbp)",1,46512490,46514040,2.1528141]
["ENSG00000272506.1 Chr1:65469153-65469770(618 bp)",1,65469153,65469770,2.0412722]
["ENSG00000237568.1 Chr1:89726265-89735437(9.1 kbp)",1,89726265,89735437,2.2038786]
["ENSG00000225446.1 Chr1:91317316-91319843(2.5 kbp)",1,91317316,91319843,2.1933126]
["ENSG00000234225.2 Chr1:146473490-146475177(1.6 kbp)",1,146473490,146475177,2.548079]
["ENSG00000237253.1 Chr1:148598398-148599531(1.1 kbp)",1,148598398,148599531,2.2973895]
["ENSG00000237343.1 Chr1:148760504-148761583(1 kbp)",1,148760504,148761583,2.2957423]
["ENSG00000237976.1 Chr1:151319443-151320503(1 kbp)",1,151319443,151320503,2.0215967]
["ENSG00000260938.1 Chr1:178449742-178450341(600 bp)",1,178449742,178450341,2.0304356]
["ENSG00000231440.1 Chr1:240751822-240754048(2.2 kbp)",1,240751822,240754048,2.4292104]
["ENSG00000225964.1 Chr2:6968645-6980595(11.9 kbp)",2,6968645,6980595,4.8475943]
["ENSG00000234362.1 Chr2:42158739-42160863(2.1 kbp)",2,42158739,42160863,2.300448]
["ENSG00000234943.2 Chr2:54772505-54773814(1.3 kbp)",2,54772505,54773814,2.3099256]
["ENSG00000226756.1 Chr2:64871746-64873832(2 kbp)",2,64871746,64873832,2.077161]
["ENSG00000272183.1 Chr2:74728844-74729492(649 bp)",2,74728844,74729492,2.0619435]
["ENSG00000225765.1 Chr2:105028685-105030466(1.7 kbp)",2,105028685,105030466,3.3649538]
["ENSG00000222043.2 Chr2:178129087-178130243(1.1 kbp)",2,178129087,178130243,2.2893486]
["ENSG00000261379.1 Chr2:227668752-227669777(1 kbp)",2,227668752,227669777,4.020687]
["ENSG00000229915.1 Chr2:239335718-239336370(653 bp)",2,239335718,239336370,2.2696404]
["ENSG00000272498.1 Chr3:16380815-16381378(564 bp)",3,16380815,16381378,3.2565694]
["ENSG00000272477.1 Chr3:18450172-18451127(956 bp)",3,18450172,18451127,2.921021]
["ENSG00000272182.1 Chr3:58413982-58414542(561 bp)",3,58413982,58414542,2.3170815]
["ENSG00000244265.1 Chr3:150479724-150480325(602 bp)",3,150479724,150480325,2.4793181]
["ENSG00000271778.1 Chr3:158500336-158500913(578 bp)",3,158500336,158500913,2.2722116]
["ENSG00000269889.1 Chr3:169487437-169489831(2.3 kbp)",3,169487437,169489831,2.137025]
["ENSG00000270109.1 Chr4:57330324-57330745(422 bp)",4,57330324,57330745,3.429801]
["ENSG00000270302.1 Chr4:153229435-153231135(1.7 kbp)",4,153229435,153231135,2.1765316]
["ENSG00000272354.1 Chr5:64316441-64316816(376 bp)",5,64316441,64316816,2.0560281]
["ENSG00000236447.2 Chr5:81287814-81288300(487 bp)",5,81287814,81288300,3.2796674]
["ENSG00000250909.1 Chr5:175774944-175780587(5.6 kbp)",5,175774944,175780587,2.0628328]
["ENSG00000272463.1 Chr6:708592-711405(2.8 kbp)",6,708592,711405,2.3001633]
["ENSG00000224846.1 Chr6:2989960-2999368(9.4 kbp)",6,2989960,2999368,2.177783]
["ENSG00000261839.1 Chr6:28104627-28107456(2.8 kbp)",6,28104627,28107456,2.183005]
["ENSG00000234006.1 Chr6:31510081-31510915(835 bp)",6,31510081,31510915,3.1883001]
["ENSG00000272189.1 Chr6:136871799-136873692(1.8 kbp)",6,136871799,136873692,2.3031125]
["ENSG00000225532.1 Chr6:171045261-171046865(1.6 kbp)",6,171045261,171046865,2.3386056]
["ENSG00000244239.1 Chr7:8301863-8302451(589 bp)",7,8301863,8302451,3.023528]
["ENSG00000260070.1 Chr7:36359384-36360088(705 bp)",7,36359384,36360088,3.0575635]
["ENSG00000203446.2 Chr7:40577726-40586527(8.8 kbp)",7,40577726,40586527,2.6926737]
["ENSG00000234183.1 Chr7:44888015-44889167(1.1 kbp)",7,44888015,44889167,2.087133]
["ENSG00000249595.1 Chr7:74856621-74857439(819 bp)",7,74856621,74857439,2.2661216]
["ENSG00000227053.1 Chr7:100657601-100660889(3.2 kbp)",7,100657601,100660889,2.008996]
["ENSG00000271948.1 Chr8:17082473-17082978(506 bp)",8,17082473,17082978,3.054123]
["ENSG00000272010.1 Chr8:66504085-66504707(623 bp)",8,66504085,66504707,2.0389407]
["ENSG00000272155.1 Chr8:66626569-66627013(445 bp)",8,66626569,66627013,2.6310668]
["ENSG00000270077.1 Chr8:98156398-98156951(554 bp)",8,98156398,98156951,2.2836149]
["ENSG00000266289.1 Chr8:104395306-104396082(777 bp)",8,104395306,104396082,2.0727904]
["ENSG00000253513.1 Chr8:126009227-126010440(1.2 kbp)",8,126009227,126010440,2.450383]
["ENSG00000231212.1 Chr9:46661242-46662837(1.5 kbp)",9,46661242,46662837,2.0025775]
["ENSG00000261447.1 Chr9:72287665-72288629(965 bp)",9,72287665,72288629,2.0660608]
["ENSG00000236514.1 Chr10:38146668-38148038(1.3 kbp)",10,38146668,38148038,3.0095844]
["ENSG00000233547.1 Chr10:114710405-114711634(1.2 kbp)",10,114710405,114711634,2.3008742]
["ENSG00000254739.1 Chr11:528907-529659(753 bp)",11,528907,529659,2.4580107]
["ENSG00000205866.2 Chr11:1686827-1689086(2.2 kbp)",11,1686827,1689086,2.8600671]
["ENSG00000255276.1 Chr11:4158346-4159487(1.1 kbp)",11,4158346,4159487,3.9056482]
["ENSG00000256690.1 Chr11:62599706-62601515(1.8 kbp)",11,62599706,62601515,4.168239]
["ENSG00000227726.1 Chr11:70323382-70323697(316 bp)",11,70323382,70323697,2.5010495]
["ENSG00000254691.1 Chr11:77561650-77562557(908 bp)",11,77561650,77562557,2.0402517]
["ENSG00000260209.1 Chr11:125742926-125744423(1.4 kbp)",11,125742926,125744423,2.131985]
["ENSG00000255740.2 Chr12:16939696-16940779(1 kbp)",12,16939696,16940779,3.6321306]
["ENSG00000257829.1 Chr12:52700400-52702155(1.7 kbp)",12,52700400,52702155,3.1412897]
["ENSG00000258260.1 Chr12:56661577-56663888(2.3 kbp)",12,56661577,56663888,2.0360713]
["ENSG00000256204.1 Chr12:131462107-131463313(1.2 kbp)",12,131462107,131463313,2.1057978]
["ENSG00000258651.1 Chr14:39572344-39573016(673 bp)",14,39572344,39573016,2.0487401]
["ENSG00000257900.2 Chr14:45846471-45858489(12 kbp)",14,45846471,45858489,2.4827898]
["ENSG00000258857.1 Chr14:50863731-50865063(1.3 kbp)",14,50863731,50865063,2.6323118]
["ENSG00000246863.2 Chr15:40213243-40218081(4.8 kbp)",15,40213243,40218081,2.2800338]
["ENSG00000259442.1 Chr15:83412975-83419041(6 kbp)",15,83412975,83419041,2.5065005]
["ENSG00000259694.1 Chr15:84839930-84841946(2 kbp)",15,84839930,84841946,2.5560029]
["ENSG00000259551.1 Chr15:85043609-85045612(2 kbp)",15,85043609,85045612,2.2447934]
["ENSG00000254414.1 Chr15:85175129-85177218(2 kbp)",15,85175129,85177218,2.0292764]
["ENSG00000261532.1 Chr16:2261998-2262864(867 bp)",16,2261998,2262864,2.6241796]
["ENSG00000257769.1 Chr16:15702331-15704420(2 kbp)",16,15702331,15704420,2.2706208]
["ENSG00000270118.1 Chr16:28465462-28465832(371 bp)",16,28465462,28465832,2.310696]
["ENSG00000262756.1 Chr16:29793246-29794294(1 kbp)",16,29793246,29794294,2.0673883]
["ENSG00000261238.1 Chr16:51183150-51183730(581 bp)",16,51183150,51183730,2.024291]
["ENSG00000262514.1 Chr16:68233698-68234884(1.1 kbp)",16,68233698,68234884,3.5549207]
["ENSG00000263301.1 Chr17:7342478-7346646(4.1 kbp)",17,7342478,7346646,2.0415385]
["ENSG00000269947.1 Chr17:8181081-8181754(674 bp)",17,8181081,8181754,3.9202962]
["ENSG00000261433.1 Chr17:10561859-10562399(541 bp)",17,10561859,10562399,2.319338]
["ENSG00000262786.1 Chr17:14198829-14200917(2 kbp)",17,14198829,14200917,2.0769577]
["ENSG00000239203.1 Chr17:16330788-16332033(1.2 kbp)",17,16330788,16332033,2.303963]
["ENSG00000270091.1 Chr17:19799903-19800600(698 bp)",17,19799903,19800600,2.149746]
["ENSG00000259928.1 Chr17:28891075-28892594(1.5 kbp)",17,28891075,28892594,3.8009973]
["ENSG00000266490.1 Chr17:29119390-29119851(462 bp)",17,29119390,29119851,2.4627671]
["ENSG00000263874.1 Chr17:37081421-37084310(2.8 kbp)",17,37081421,37084310,2.159253]
["ENSG00000264558.1 Chr17:45759783-45760049(267 bp)",17,45759783,45760049,2.139125]
["ENSG00000266644.1 Chr17:62895884-62896834(951 bp)",17,62895884,62896834,2.765182]
["ENSG00000266473.1 Chr17:65240953-65241922(970 bp)",17,65240953,65241922,2.0231216]
["ENSG00000266036.1 Chr17:72743458-72745051(1.5 kbp)",17,72743458,72745051,2.1562984]
["ENSG00000260369.2 Chr17:78427535-78428529(995 bp)",17,78427535,78428529,2.2419276]
["ENSG00000264812.1 Chr17:80358579-80359258(680 bp)",17,80358579,80359258,2.040155]
["ENSG00000266521.1 Chr18:29076608-29077158(551 bp)",18,29076608,29077158,2.0342038]
["ENSG00000248015.2 Chr19:1392169-1396466(4.2 kbp)",19,1392169,1396466,2.1299295]
["ENSG00000267980.1 Chr19:4363786-4364637(852 bp)",19,4363786,4364637,3.272619]
["ENSG00000267212.1 Chr19:12895353-12895915(563 bp)",19,12895353,12895915,2.4617307]
["ENSG00000267633.1 Chr19:13882932-13884932(2 kbp)",19,13882932,13884932,2.4160218]
["ENSG00000269720.1 Chr19:17502238-17503093(856 bp)",19,17502238,17503093,3.794217]
["ENSG00000269053.1 Chr19:17530114-17530583(470 bp)",19,17530114,17530583,2.4682345]
["ENSG00000268751.1 Chr19:35067638-35068606(969 bp)",19,35067638,35068606,3.4823823]
["ENSG00000267672.1 Chr19:37582243-37583466(1.2 kbp)",19,37582243,37583466,3.329539]
["ENSG00000269652.1 Chr19:41727331-41727956(626 bp)",19,41727331,41727956,2.0438116]
["ENSG00000267192.1 Chr19:56898781-56899793(1 kbp)",19,56898781,56899793,2.0755262]
["ENSG00000233376.1 Chr20:43018264-43020177(1.9 kbp)",20,43018264,43020177,2.5501738]
["ENSG00000237907.1 Chr20:43077417-43078732(1.3 kbp)",20,43077417,43078732,2.1257622]
["ENSG00000241624.1 Chr20:62198794-62199958(1.1 kbp)",20,62198794,62199958,2.2243319]
["ENSG00000261610.1 Chr21:33632115-33633896(1.7 kbp)",21,33632115,33633896,2.198533]
["ENSG00000236611.1 Chr22:23668803-23670680(1.8 kbp)",22,23668803,23670680,2.2220166]
["ENSG00000227484.1 Chr22:50753060-50754437(1.3 kbp)",22,50753060,50754437,2.123712]
["ENSG00000226179.1 ChrX:281725-282586(862 bp)","X",281725,282586,3.1809244]
["ENSGR0000226179.1 ChrY:231725-232586(862 bp)","Y",231725,232586,3.1809244]

{"sheet":"4-fold 24h","index":2,"n_rows":123,"n_cols":5,"rows_kept":123,"cut":false,"hidden":false,"merged":[]}
["Table S2. List of annotated putative lncRNAs that show a reproducible, statistically significant change of 4 fold or more in expression level compared to controls"]
["This is the list of upregulated lncRNAs at 24 hour time point. Please see the other worksheets (tabs below) for the 3 and 9 hour time points. "]
["As many lncRNAs show a very low level of expression, we did not filter the results that had a low read count, as long as the change between IFN+ and IFN- groups was reproducible. "]
["lncRNA ID and locus (length of the region showing statistically significant changes in read density)","Chr","Start","End","Fold Difference (log 2)"]
["ENSG00000243485.2 Chr1:29554-31109(1.5 kbp)",1,29554,31109,2.0332382]
["ENSG00000223643.2 Chr1:17177752-17179624(1.8 kbp)",1,17177752,17179624,2.338971]
["ENSG00000236528.1 Chr1:26186104-26189911(3.8 kbp)",1,26186104,26189911,2.067798]
["ENSG00000271554.1 Chr1:36457710-36479231(21.5 kbp)",1,36457710,36479231,3.9449453]
["ENSG00000261798.1 Chr1:40254648-40255843(1.1 kbp)",1,40254648,40255843,2.4897466]
["ENSG00000237568.1 Chr1:89726265-89735437(9.1 kbp)",1,89726265,89735437,2.345616]
["ENSG00000225964.1 Chr2:6968645-6980595(11.9 kbp)",2,6968645,6980595,6.6265388]
["ENSG00000272048.1 Chr2:25450724-25451090(367 bp)",2,25450724,25451090,2.4748557]
["ENSG00000234943.2 Chr2:54772505-54773814(1.3 kbp)",2,54772505,54773814,2.1498675]
["ENSG00000272183.1 Chr2:74728844-74729492(649 bp)",2,74728844,74729492,2.251748]
["ENSG00000225765.1 Chr2:105028685-105030466(1.7 kbp)",2,105028685,105030466,2.5235283]
["ENSG00000230065.1 Chr2:133418099-133424563(6.4 kbp)",2,133418099,133424563,2.6113527]
["ENSG00000222043.2 Chr2:178129087-178130243(1.1 kbp)",2,178129087,178130243,3.1842914]
["ENSG00000270659.1 Chr2:214017694-214018383(690 bp)",2,214017694,214018383,2.3524408]
["ENSG00000230838.1 Chr2:216582766-216584147(1.3 kbp)",2,216582766,216584147,2.49406]
["ENSG00000261379.1 Chr2:227668752-227669777(1 kbp)",2,227668752,227669777,3.8276253]
["ENSG00000249786.2 Chr3:15477678-15485576(7.8 kbp)",3,15477678,15485576,2.0633268]
["ENSG00000272258.1 Chr3:37220579-37220861(283 bp)",3,37220579,37220861,2.048699]
["ENSG00000271916.1 Chr3:53831791-53832046(256 bp)",3,53831791,53832046,2.2986662]
["ENSG00000244265.1 Chr3:150479724-150480325(602 bp)",3,150479724,150480325,2.678462]
["ENSG00000269728.1 Chr3:179113877-179115965(2 kbp)",3,179113877,179115965,2.6456556]
["ENSG00000270109.1 Chr4:57330324-57330745(422 bp)",4,57330324,57330745,2.3145137]
["ENSG00000249404.1 Chr5:23013157-23014636(1.4 kbp)",5,23013157,23014636,2.4947605]
["ENSG00000215068.3 Chr5:43041677-43045492(3.8 kbp)",5,43041677,43045492,2.0828395]
["ENSG00000269961.1 Chr5:65220457-65220963(507 bp)",5,65220457,65220963,2.8765278]
["ENSG00000250615.1 Chr5:76369706-76370345(640 bp)",5,76369706,76370345,2.5138178]
["ENSG00000236447.2 Chr5:81287814-81288300(487 bp)",5,81287814,81288300,2.4707227]
["ENSG00000251456.1 Chr5:124070311-124070868(558 bp)",5,124070311,124070868,2.1493049]
["ENSG00000248559.1 Chr5:133735186-133737612(2.4 kbp)",5,133735186,133737612,2.2102149]
["ENSG00000250909.1 Chr5:175774944-175780587(5.6 kbp)",5,175774944,175780587,2.179153]
["ENSG00000224846.1 Chr6:2989960-2999368(9.4 kbp)",6,2989960,2999368,2.3556862]
["ENSG00000227214.2 Chr6:28953980-28955261(1.2 kbp)",6,28953980,28955261,2.4105985]
["ENSG00000272236.1 Chr6:29719742-29719984(243 bp)",6,29719742,29719984,2.4147418]
["ENSG00000272217.1 Chr6:33213852-33214633(782 bp)",6,33213852,33214633,2.2828407]
["ENSG00000228614.1 Chr6:53655673-53659072(3.4 kbp)",6,53655673,53659072,2.0490518]
["ENSG00000225532.1 Chr6:171045261-171046865(1.6 kbp)",6,171045261,171046865,2.503963]
["ENSG00000230435.1 Chr7:11446582-11453705(7.1 kbp)",7,11446582,11453705,2.3218195]
["ENSG00000233517.1 Chr7:29026644-29028515(1.8 kbp)",7,29026644,29028515,2.055008]
["ENSG00000203446.2 Chr7:40577726-40586527(8.8 kbp)",7,40577726,40586527,3.0200462]
["ENSG00000240790.1 Chr7:127284739-127292066(7.3 kbp)",7,127284739,127292066,2.1135004]
["ENSG00000270810.1 Chr7:128327342-128327926(585 bp)",7,128327342,128327926,3.0415092]
["ENSG00000270953.1 Chr7:130147501-130148123(623 bp)",7,130147501,130148123,2.2846801]
["ENSG00000271948.1 Chr8:17082473-17082978(506 bp)",8,17082473,17082978,2.877452]
["ENSG00000270077.1 Chr8:98156398-98156951(554 bp)",8,98156398,98156951,2.1821024]
["ENSG00000271882.1 Chr8:102220376-102220786(411 bp)",8,102220376,102220786,2.2629805]
["ENSG00000254372.1 Chr8:136468108-136469195(1 kbp)",8,136468108,136469195,2.6702375]
["ENSG00000235387.1 Chr9:35909480-35911683(2.2 kbp)",9,35909480,35911683,2.4194105]
["ENSG00000231587.1 Chr9:134365873-134365958(86 bp)",9,134365873,134365958,3.3321729]
["ENSG00000259812.1 Chr10:6628186-6628882(697 bp)",10,6628186,6628882,3.4613404]
["ENSG00000272516.1 Chr10:22621333-22621916(584 bp)",10,22621333,22621916,2.6752646]
["ENSG00000260151.1 Chr10:27632365-27633846(1.4 kbp)",10,27632365,27633846,2.0100834]
["ENSG00000236514.1 Chr10:38146668-38148038(1.3 kbp)",10,38146668,38148038,2.8247838]
["ENSG00000231964.1 Chr10:45940018-45948569(8.5 kbp)",10,45940018,45948569,2.2116039]
["ENSG00000248682.1 Chr10:49718568-49719632(1 kbp)",10,49718568,49719632,2.4213529]
["ENSG00000231233.1 Chr10:106111349-106113333(1.9 kbp)",10,106111349,106113333,2.9208484]
["ENSG00000254739.1 Chr11:528907-529659(753 bp)",11,528907,529659,2.1772144]
["ENSG00000205866.2 Chr11:1686827-1689086(2.2 kbp)",11,1686827,1689086,2.3765516]
["ENSG00000226416.1 Chr11:2004467-2011150(6.6 kbp)",11,2004467,2011150,2.1367953]
["ENSG00000255355.1 Chr11:59436785-59443514(6.7 kbp)",11,59436785,59443514,2.1254508]
["ENSG00000256944.1 Chr11:60680638-60681524(887 bp)",11,60680638,60681524,2.4490545]
["ENSG00000256690.1 Chr11:62599706-62601515(1.8 kbp)",11,62599706,62601515,2.3310063]
["ENSG00000260877.1 Chr11:69186231-69187279(1 kbp)",11,69186231,69187279,2.4663742]
["ENSG00000227726.1 Chr11:70323382-70323697(316 bp)",11,70323382,70323697,2.7400112]
["ENSG00000257660.1 Chr12:49182930-49184318(1.3 kbp)",12,49182930,49184318,2.3432014]
["ENSG00000258232.2 Chr12:49658939-49667089(8.1 kbp)",12,49658939,49667089,4.6435065]
["ENSG00000255629.1 Chr12:64540168-64541637(1.4 kbp)",12,64540168,64541637,2.0070145]
["ENSG00000256262.1 Chr12:109490155-109491757(1.6 kbp)",12,109490155,109491757,3.0255165]
["ENSG00000271579.1 Chr12:115737393-115738513(1.1 kbp)",12,115737393,115738513,2.4754143]
["ENSG00000228886.1 Chr13:45924458-45925485(1 kbp)",13,45924458,45925485,2.0849814]
["ENSG00000225203.2 Chr13:75949647-75951430(1.7 kbp)",13,75949647,75951430,2.3289857]
["ENSG00000261057.1 Chr13:103241722-103242163(442 bp)",13,103241722,103242163,2.4755082]
["ENSG00000258651.1 Chr14:39572344-39573016(673 bp)",14,39572344,39573016,3.4681034]
["ENSG00000258813.1 Chr14:73525139-73526123(985 bp)",14,73525139,73526123,2.4610376]
["ENSG00000259687.1 Chr14:75761107-75763341(2.2 kbp)",14,75761107,75763341,2.0745006]
["ENSG00000225163.3 Chr14:97409916-97411731(1.8 kbp)",14,97409916,97411731,2.056488]
["ENSG00000260988.1 Chr15:78433585-78435515(1.9 kbp)",15,78433585,78435515,3.2240794]
["ENSG00000259442.1 Chr15:83412975-83419041(6 kbp)",15,83412975,83419041,2.7069848]
["ENSG00000268836.1 Chr16:235747-236293(547 bp)",16,235747,236293,2.8810725]
["ENSG00000259876.1 Chr16:12650210-12651551(1.3 kbp)",16,12650210,12651551,2.1640913]
["ENSG00000257769.1 Chr16:15702331-15704420(2 kbp)",16,15702331,15704420,2.5861669]
["ENSG00000259827.1 Chr16:56716382-56721719(5.3 kbp)",16,56716382,56721719,2.2271967]
["ENSG00000262514.1 Chr16:68233698-68234884(1.1 kbp)",16,68233698,68234884,3.1789432]
["ENSG00000262588.1 Chr16:71570489-71571821(1.3 kbp)",16,71570489,71571821,2.4972277]
["ENSG00000270020.1 Chr16:86553989-86557503(3.5 kbp)",16,86553989,86557503,2.36617]
["ENSG00000263338.1 Chr17:3481249-3482147(899 bp)",17,3481249,3482147,2.188707]
["ENSG00000269947.1 Chr17:8181081-8181754(674 bp)",17,8181081,8181754,3.1986308]
["ENSG00000264023.1 Chr17:21360746-21362301(1.5 kbp)",17,21360746,21362301,2.0212574]
["ENSG00000266490.1 Chr17:29119390-29119851(462 bp)",17,29119390,29119851,3.2146416]
["ENSG00000264456.1 Chr17:29298670-29300330(1.6 kbp)",17,29298670,29300330,2.303732]
["ENSG00000266385.1 Chr17:30738236-30739439(1.2 kbp)",17,30738236,30739439,2.8529184]
["ENSG00000264083.1 Chr17:30757986-30759860(1.8 kbp)",17,30757986,30759860,3.8635435]
["ENSG00000267405.1 Chr17:42872115-42875151(3 kbp)",17,42872115,42875151,2.3560047]
["ENSG00000266644.1 Chr17:62895884-62896834(951 bp)",17,62895884,62896834,2.300488]
["ENSG00000267078.1 Chr17:74565874-74567322(1.4 kbp)",17,74565874,74567322,2.0042112]
["ENSG00000260369.2 Chr17:78427535-78428529(995 bp)",17,78427535,78428529,2.736917]
["ENSG00000266521.1 Chr18:29076608-29077158(551 bp)",18,29076608,29077158,2.8799756]
["ENSG00000265778.1 Chr18:74203608-74205487(1.8 kbp)",18,74203608,74205487,2.0372708]
["ENSG00000267588.2 Chr19:71161-72719(1.5 kbp)",19,71161,72719,2.1706748]
["ENSG00000248015.2 Chr19:1392169-1396466(4.2 kbp)",19,1392169,1396466,3.1461523]
["ENSG00000267231.1 Chr19:3558013-3558484(472 bp)",19,3558013,3558484,2.4702423]
["ENSG00000266912.1 Chr19:9455460-9456574(1.1 kbp)",19,9455460,9456574,2.1697977]
["ENSG00000267512.1 Chr19:13250431-13251961(1.5 kbp)",19,13250431,13251961,2.2685375]
["ENSG00000269720.1 Chr19:17502238-17503093(856 bp)",19,17502238,17503093,3.6684613]
["ENSG00000266976.1 Chr19:29097595-29106136(8.5 kbp)",19,29097595,29106136,3.5371268]
["ENSG00000267874.1 Chr19:35527238-35527964(727 bp)",19,35527238,35527964,2.880605]
["ENSG00000267672.1 Chr19:37582243-37583466(1.2 kbp)",19,37582243,37583466,2.7094414]
["ENSG00000270164.1 Chr19:42041545-42043266(1.7 kbp)",19,42041545,42043266,2.0345442]
["ENSG00000269392.1 Chr19:50869137-50872588(3.4 kbp)",19,50869137,50872588,3.1074984]
["ENSG00000233376.1 Chr20:43018264-43020177(1.9 kbp)",20,43018264,43020177,2.544498]
["ENSG00000226332.2 Chr20:60880488-60881381(894 bp)",20,60880488,60881381,2.2310019]
["ENSG00000241624.1 Chr20:62198794-62199958(1.1 kbp)",20,62198794,62199958,3.1208506]
["ENSG00000270093.1 Chr21:18015848-18017384(1.5 kbp)",21,18015848,18017384,2.4053583]
["ENSG00000236611.1 Chr22:23668803-23670680(1.8 kbp)",22,23668803,23670680,2.0596986]
["ENSG00000227484.1 Chr22:50753060-50754437(1.3 kbp)",22,50753060,50754437,2.4956677]
["ENSG00000205559.3 Chr22:51021455-51022306(852 bp)",22,51021455,51022306,2.1576765]
["ENSG00000226179.1 ChrX:281725-282586(862 bp)","X",281725,282586,2.6619015]
["ENSG00000232412.1 ChrX:123093083-123095191(2.1 kbp)","X",123093083,123095191,2.076509]
["ENSG00000231830.1 ChrX:153562310-153563387(1 kbp)","X",153562310,153563387,2.4751182]
["ENSGR0000226179.1 ChrY:231725-232586(862 bp)","Y",231725,232586,2.6619015]