Chromosome,scaffold,SNP,predicted 
CHR1,LSalAtl2s111,c8501.30679,P31674|RS15_ORYSJ 40S ribosomal protein S15 (5649)
CHR1,LSalAtl2s111,c8501.30679,P70404|IDH3G_MOUSE Isocitrate dehydrogenase [NAD] subunit gamma (16057)
CHR1,LSalAtl2s111,c8501.30679,P52174|NDKA1_BOVIN Nucleoside diphosphate kinase A 1 (29036)
CHR1,LSalAtl2s111,c8501.30679,Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme (28738)
CHR1,LSalAtl2s111,c8501.30679,Q29361|RL35_PIG 60S ribosomal protein L35 (36442)
CHR1,LSalAtl2s111,c8501.30679,O15439|MRP4_HUMAN Multidrug resistance-associated protein 4 (55855)
CHR1,LSalAtl2s111,c8501.30679,Q96J66|ABCCB_HUMAN ATP-binding cassette transporter sub-family (100000)
CHR1,LSalAtl2s111,c8501.30679,Q7MAR1|SYK_WOLSU Lysyl-tRNA synthetase (513420)
CHR1,LSalAtl2s362,c13044.20085,Q27433|MEC2_CAEEL Mechanosensory protein 2 (268152)
CHR1,LSalAtl2s572,c15946.2241,P34400|MIG10_CAEEL Abnormal cell migration protein 10
CHR1,LSalAtl2s572,c15946.2241,Q5F361|TBCK_CHICK TBC domain-containing protein kinase-like
CHR1,LSalAtl2s572,c15946.2241,Q60HE2|ODO1_MACFA 2-oxoglutarate dehydrogenase E1 component
CHR1,LSalAtl2s572,c15946.2241,Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130
CHR5,LSalAtl2s556 ,c10830.50622,Q8CD92|TTC27_MOUSE Tetratricopeptide repeat protein 27
CHR5,LSalAtl2s556 ,c10830.50622,Q2TA49|VASP_BOVIN Vasodilator-stimulated phosphoprotein
CHR5,LSalAtl2s556 ,c10830.50622,Q0IIZ2|ARSA1_XENTR Arsenical pump-driving ATPase
CHR5,LSalAtl2s556 ,c10830.50622,Q76LC6|RBM24_DANRE RNA-binding protein 24
CHR5,LSalAtl2s556 ,c10830.50622,O76767|ERD2_DROME ER lumen protein retaining receptor
CHR5,LSalAtl2s521,c15216.21845,A2AS55|ANR16_MOUSE Ankyrin repeat domain-containing protein 16 (13714)
CHR5,LSalAtl2s521,c15216.21845,Q4ADK4|CFDP1_MUNRE Craniofacial development protein 1 (12567)
CHR5,LSalAtl2s521,c15216.21845,O75840|KLF7_HUMAN Krueppel-like factor 7  (159546)
CHR5,LSalAtl2s237,c17970.6712,O60500|NPHN_HUMAN Nephrin (371452)
CHR5,LSalAtl2s237,c17970.6712,P08575|CD45_HUMAN Leukocyte common antigen (442785)
CHR5,LSalAtl2s237,c17970.6712,Q9W6V5|PTPRJ_CHICK Receptor-type tyrosine-protein phosphatase ()
CHR5,LSalAtl2s237,c17970.6712,Q9P2J8|ZN624_HUMAN Zinc finger protein 624 (446281)
CHR5,LSalAtl2s237,c17970.6712,Q9KCB9|NDK_BACHD Nucleoside diphosphate kinase (470333)
CHR5,LSalAtl2s237,c17970.6712,Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain (482549)
CHR5,LSalAtl2s237,c17970.6712,Q6PGB8|SMCA1_MOUSE Probable global transcription activator ()
CHR5,LSalAtl2s237,c17970.6712,"P91119|PDE5_CAEEL Probable 3',5'-cyclic phosphodiesterase (479337)"
CHR5,LSalAtl2s237,c17970.6712,Q5ZIA0|MET10_CHICK Putative methyltransferase METT10D (593412)
CHR5,LSalAtl2s237,c17970.6712,Q9ULJ8|NEB1_HUMAN Neurabin-1 (625058)
CHR5,LSalAtl2s237,c17970.6712,Q7ZYJ9|AASDB_XENLA Alanyl-tRNA synthetase domain-containing prot (665010)
CHR5,LSalAtl2s237,c17970.6712,Q9NV58|RN19A_HUMAN E3 ubiquitin-protein ligase RNF19A (773672)
CHR5,LSalAtl2s521,c22647.17702,A2AS55|ANR16_MOUSE Ankyrin repeat domain-containing protein 16 (13714)
CHR5,LSalAtl2s521,c22647.17702,Q4ADK4|CFDP1_MUNRE Craniofacial development protein 1 (12567)
CHR5,LSalAtl2s521,c22647.17702,O75840|KLF7_HUMAN Krueppel-like factor 7 (159546)
CHR5,LSalAtl2s390,c14529.390,Q9JHW1|CBPD_RAT Carboxypeptidase
CHR5,LSalAtl2s390,c14529.390,Q9JLB0|MPP6_MOUSE MAGUK p55 subfamily member 6
CHR5,LSalAtl2s390,c14529.390,Q14168|MPP2_HUMAN MAGUK p55 subfamily member 2
CHR5,LSalAtl2s241 ,c13466.11524,Q9W0K4|BAB2_DROME Protein bric-a-brac 2
CHR5,LSalAtl2s241 ,c13466.11524,P61023|CHP1_RAT Calcium-binding protein p22
CHR5,LSalAtl2s241 ,c13466.11524,Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3
CHR5,LSalAtl2s241 ,c13466.11524,O73590|ZFHX4_CHICK Zinc finger homeobox protein 4
CHR5,LSalAtl2s676 ,c9525.70796,Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein
CHR5,LSalAtl2s676 ,c9525.70796,Q5M985|NGDNB_XENLA Neuroguidin-B
CHR5,LSalAtl2s676 ,c9525.70796,P56616|UBE2C_XENLA Ubiquitin-conjugating enzyme E2
CHR5,LSalAtl2s676 ,c9525.70796,Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2
CHR5,LSalAtl2s676 ,c9525.70796,O14733|MP2K7_HUMAN Dual specificity mitogen-activated protein kinase
CHR5,LSalAtl2s676 ,c9525.70796,Q27802|DYHC2_TRIGR Cytoplasmic dynein 2 heavy chain 1
CHR5,LSalAtl2s676 ,c9525.70796,Q86YS7|K0528_HUMAN Uncharacterized protein KIAA0528
CHR5,LSalAtl2s676 ,c9525.70796,Q6NTN5|MTMRD_XENLA Myotubularin-related protein 13
CHR5,LSalAtl2s676 ,c9525.70796,Q24400|MLP2_DROME Muscle LIM protein Mlp84B
CHR5,LSalAtl2s676 ,c9525.70796,Q7ZU13|SPNS1_DANRE Protein spinster homolog 1
CHR5,LSalAtl2s676 ,c9525.70796,Q3ZBF3|RM38_BOVIN 39S ribosomal protein L38
CHR5,LSalAtl2s676 ,c9525.70796,Q8NI37|PPTC7_HUMAN Protein phosphatase PTC7 homolog
CHR5,LSalAtl2s676 ,c9525.70796,Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82
CHR5,LSalAtl2s415,c15581.45069,P08510|KCNAS_DROME Potassium voltage-gated channel protein
CHR5,LSalAtl2s415,c15581.45069,P15120|UROK_CHICK Urokinase-type plasminogen activator
CHR5,LSalAtl2s415,c15581.45069,Q568Y5|TSN11_RAT Tetraspanin-11
CHR5,LSalAtl2s596 ,c12635.18790,Q8NI51|BORIS_HUMAN Transcriptional repressor CTCFL
CHR5,LSalAtl2s596 ,c12635.18790,Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020
CHR5,LSalAtl2s596 ,c12635.18790,Q9QZH2|BARD1_RAT BRCA1-associated RING domain protein 1
CHR5,LSalAtl2s596 ,c12635.18790,Q9H1Y0|ATG5_HUMAN Autophagy protein 5
CHR5,LSalAtl2s596 ,c12635.18790,Q9UGI0|ZRAN1_HUMAN Zinc finger Ran-binding domain-containing protein
CHR5,LSalAtl2s596 ,c12635.18790,Q66L33|MK16A_XENLA Protein MAK16 homolog
CHR5,LSalAtl2s596 ,c12635.18790,Q6IDD9|SARM1_DROME Sterile alpha and TIR motif-containing protein
CHR5,LSalAtl2s596 ,c12635.18790,Q9NZ01|GPSN2_HUMAN Synaptic glycoprotein SC2
CHR5,LSalAtl2s596 ,c12635.18790,Q99797|MIPEP_HUMAN Mitochondrial intermediate peptidase
CHR5,LSalAtl2s65 ,c9834.24907,Q9EPS3|GLCE_MOUSE D-glucuronyl C5-epimerase
CHR5,LSalAtl2s65 ,c9834.24907,Q9NUJ1|ABHDA_HUMAN Abhydrolase domain-containing protein 10
CHR5,LSalAtl2s65 ,c9834.24907,Q1JPX3|SYFA_DANRE Phenylalanyl-tRNA synthetase alpha chain
CHR5,LSalAtl2s65 ,c9834.24907,Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha
CHR5,LSalAtl2s65 ,c9834.24907,P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2
CHR5,LSalAtl2s65 ,c9834.24907,Q7KRW1|TRC8_DROME Protein TRC8 homolog
CHR5,LSalAtl2s65 ,c9834.24907,P43690|DRG1_XENLA Developmentally-regulated GTP-binding protein
CHR5,LSalAtl2s65 ,c9834.24907,Q68Y21|GRID2_DANRE Glutamate receptor delta-2 subunit
CHR5,LSalAtl2s65 ,c9834.24907,O45211|TBP_BOMMO TATA-box-binding protein
CHR5,LSalAtl2s65 ,c9834.24907,Q497C3|CP013_RAT UPF0585 protein C16orf13 homolog
CHR5,LSalAtl2s65 ,c9834.24907,Q69Z28|ATS16_MOUSE A disintegrin and metalloproteinase
CHR5,LSalAtl2s65 ,c9834.24907,P30839|AL3A2_RAT Fatty aldehyde dehydrogenase
CHR5,LSalAtl2s873 ,c10059.23896,Q9H4Z3|PCIF1_HUMAN Phosphorylated CTD-interacting factor
CHR5,LSalAtl2s873 ,c10059.23896,Q86I95|FA18A_DICDI Uncharacterized FAM18-like protein 1
CHR5,LSalAtl2s873 ,c10059.23896,P17970|KCNAB_DROME Potassium voltage-gated channel protein
CHR5,LSalAtl2s856,c13290.10853,O95498|VNN2_HUMAN Vascular non-inflammatory molecule 2
CHR5,LSalAtl2s856,c13290.10853,P30730|LSHR_MOUSE Lutropin-choriogonadotropic hormone receptor
CHR5,LSalAtl2s856,c13290.10853,P47799|FSHR_HORSE Follicle-stimulating hormone receptor 
CHR5,LSalAtl2s856,c13290.10853,Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12
CHR5,LSalAtl2s856,c13290.10853,Q9GKZ4|TRAM1_BOVIN Translocation-associated membrane protein 
CHR5,LSalAtl2s856,c13290.10853,P34334|RL21_CAEEL 60S ribosomal protein L21
CHR5,LSalAtl2s856,c13290.10853,Q9H8E8|CSR2B_HUMAN Cysteine-rich protein 2-binding protein
CHR5,LSalAtl2s856,c13290.10853,Q28FI8|CB5D2_XENTR Cytochrome b5 domain-containing protein 2 
CHR5,LSalAtl2s856,c13290.10853,O13995|DAP1_SCHPO Cytochrome P450 regulator dap1
CHR5,LSalAtl2s856,c13290.10853,P40645|SOX6_MOUSE Transcription factor SOX-6
CHR5,LSalAtl2s856,c13290.10853,Q9CQ65|MTAP_MOUSE S-methyl-5'-thioadenosine phosphorylase
CHR5,LSalAtl2s856,c13290.10853,P53812|PIPNB_RAT Phosphatidylinositol transfer protein beta 
CHR5,LSalAtl2s856,c13290.10853,P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit
CHR5,LSalAtl2s856,c13290.10853,Q86YQ8|CPNE8_HUMAN Copine-8
CHR5,LSalAtl2s856,c13290.10853,Q96RT1|LAP2_HUMAN Protein LAP2
CHR5,LSalAtl2s856,c13290.10853,Q08DE2|T185A_BOVIN Transmembrane protein 185B
CHR5,LSalAtl2s856,c13290.10853,Q95JF4|DNAJ1_CERAE DnaJ homolog subfamily A member 1
CHR5,LSalAtl2s702 ,c27951.9372,Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocato
CHR5,LSalAtl2s702 ,c27951.9372,Q91YN5|UAP1_MOUSE UDP-N-acetylhexosamine pyrophosphorylase
CHR5,LSalAtl2s702 ,c27951.9372,Q9W707|FXF1B_XENLA Forkhead box protein F1-B 
CHR5,LSalAtl2s702 ,c27951.9372,Q5ZJC7|NOC4L_CHICK Nucleolar complex protein 4 homolog
CHR5,LSalAtl2s702 ,c27951.9372,"Q3ZBV8|SYTC_BOVIN Threonyl-tRNA synthetase, cytoplasmic"
CHR5,LSalAtl2s702 ,c27951.9372,Q69D48|RHBGA_XENLA Ammonium transporter Rh type B-A
CHR5,LSalAtl2s702 ,c27951.9372,Q9XY07|KARG_STIJA Arginine kinase
CHR5,LSalAtl2s1003 ,c9217.15200,5ZIH0|INT11_CHICK Integrator complex subunit 11
CHR5,LSalAtl2s1003 ,c9217.15200,O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase 2
CHR5,LSalAtl2s1003 ,c9217.15200,"Q5REB0|AATM_PONAB Aspartate aminotransferase, mitochondria"
CHR5,LSalAtl2s1003 ,c9217.15200,Q5R7G6|PEPL1_PONAB Probable aminopeptidase NPEPL1
CHR5,LSalAtl2s1003 ,c9217.15200,Q9VZI3|UN112_DROME Unc-112-related protein
CHR5,LSalAtl2s1003 ,c9217.15200,Q8TE56|ATS17_HUMAN A disintegrin and metalloproteinase
CHR5,LSalAtl2s1003 ,c9217.15200,"P42282|TTKA_DROME Protein tramtrack, alpha isoform"
CHR5,LSalAtl2s1003 ,c9217.15200,Q69BJ7|UCRI_SAISC Cytochrome b-c1 complex subunit Rieske
CHR5,LSalAtl2s589,c11419.61434,P41973|SODC_DROWI Superoxide dismutase [Cu-Zn]
CHR5,LSalAtl2s589,c11419.61434,Q5RAH7|PIGM_PONAB GPI mannosyltransferase 1
CHR5,LSalAtl2s589,c11419.61434,P17276|PH4H_DROME Protein henna 
CHR5,LSalAtl2s589,c11419.61434,P04176|PH4H_RAT Phenylalanine-4-hydroxylase
CHR5,LSalAtl2s589,c11419.61434,Q9W0Y2|YS11_DROME UPF0131 protein CG2811
CHR5,LSalAtl2s589,c11419.61434,P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1
CHR5,LSalAtl2s589,c11419.61434,P35270|SPRE_HUMAN Sepiapterin reductase
CHR5,LSalAtl2s589,c11419.61434,Q5R8R4|C19L1_PONAB CWF19-like protein 1
CHR5,LSalAtl2s589,c11419.61434,Q7M3K2|PELET_DROME Transposable element P transposase
CHR5,LSalAtl2s856 ,c8125.67718,P30730|LSHR_MOUSE Lutropin-choriogonadotropic hormone receptor
CHR5,LSalAtl2s856 ,c8125.67718,P47799|FSHR_HORSE Follicle-stimulating hormone receptor
CHR5,LSalAtl2s856 ,c8125.67718,Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase
CHR5,LSalAtl2s856 ,c8125.67718,Q9GKZ4|TRAM1_BOVIN Translocation-associated membrane protein
CHR5,LSalAtl2s856 ,c8125.67718,Q28FI8|CB5D2_XENTR Cytochrome b5 domain-containing protein
CHR5,LSalAtl2s856 ,c8125.67718,Q9CQ65|MTAP_MOUSE S-methyl-5'-thioadenosine phosphorylase
CHR5,LSalAtl2s856 ,c8125.67718,P53812|PIPNB_RAT Phosphatidylinositol transfer protein beta
CHR5,LSalAtl2s856 ,c8125.67718,P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding
CHR5,LSalAtl2s856 ,c8125.67718,Q86YQ8|CPNE8_HUMAN Copine-8 
CHR5,LSalAtl2s856 ,c8125.67718,Q96RT1|LAP2_HUMAN Protein LAP2
CHR5,LSalAtl2s856 ,c8125.67718,Q08DE2|T185A_BOVIN Transmembrane protein 185B
CHR5,LSalAtl2s856 ,c8125.67718,Q95JF4|DNAJ1_CERAE DnaJ homolog subfamily A member 1
CHR5,LSalAtl2s360 ,c64391.9389,O43581|SYT7_HUMAN Synaptotagmin-7
CHR5,LSalAtl2s360 ,c64391.9389,Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase
CHR5,LSalAtl2s438 ,c10340.4338,Q9BRS2|RIOK1_HUMAN Serine/threonine-protein kinase RIO1
CHR5,LSalAtl2s438 ,c10340.4338,Q99M03|RWD2B_MOUSE RWD domain-containing protein 2B 
CHR5,LSalAtl2s438 ,c10340.4338,Q8C1B1|CA1L1_MOUSE Calmodulin-regulated spectrin-associated prot
CHR5,LSalAtl2s438 ,c10340.4338,O13224|HSPB1_POELU Heat shock protein beta-1
CHR5,LSalAtl2s438 ,c10340.4338,P02493|CRYAA_RABIT Alpha-crystallin A chain
CHR5,LSalAtl2s438 ,c10340.4338,P98195|ATP9B_MOUSE Probable phospholipid-transporting ATPase
CHR5,LSalAtl2s438 ,c10340.4338,Q6VUP9|AP2E_MOUSE Transcription factor AP-2 epsilon
CHR5,LSalAtl2s313  ,c13837.9685,A4IFA6|ISLR_BOVIN Immunoglobulin superfamily containing leucine
CHR5,LSalAtl2s895,c20315.771,Q9WVF7|DPOE1_MOUSE DNA polymerase epsilon catalytic subunit A
CHR5,LSalAtl2s895,c20315.771,O14657|TOR1B_HUMAN Torsin-1B 
CHR5,LSalAtl2s895,c20315.771,Q13614|MTMR2_HUMAN Myotubularin-related protein 2
CHR5,LSalAtl2s1452,c8242.28249,Q00649|HSPB1_CHICK Heat shock protein beta-1
CHR5,LSalAtl2s1452,c8242.28249,O61443|MK14B_DROME Mitogen-activated protein kinase 14B
CHR5,LSalAtl2s1452,c8242.28249,Q99K74|MED24_MOUSE Mediator of RNA polymerase II transcription
CHR5,LSalAtl2s1452,c8242.28249,Q64323|PIGA_MOUSE N-acetylglucosaminyl-phosphatidylinositol
CHR5,LSalAtl2s1452,c8242.28249,Q9R0Q9|MPU1_MOUSE Mannose-P-dolichol utilization defect 1 protei
CHR5,LSalAtl2s1452,c8242.28249,Q5R6X7|CBX3_PONAB Chromobox protein homolog 3
CHR5,LSalAtl2s1452,c8242.28249,Q8NBV4|PPAC3_HUMAN Probable lipid phosphate phosphatase
CHR5,LSalAtl2s1452,c8242.28249,O89033|CDC6_MOUSE Cell division control protein 6 homolog
CHR5,LSalAtl2s1452,c8242.28249,P10076|ZFP26_MOUSE Zinc finger protein 26
CHR5,LSalAtl2s798,c8000.19080,Q9YH16|LMO3_XENLA LIM domain only protein 3
CHR14,LSalAtl2s248,c12479.19820,Q99578|RIT2_HUMAN GTP-binding protein Rit2
CHR14,LSalAtl2s248,c12479.19820,Q8VDP6|CDIPT_MOUSE CDP-diacylglycerol--inositol 3-phosphatidyltransf
CHR14,LSalAtl2s248,c12479.19820,Q1HPQ0|TPM2_BOMMO Tropomyosin-2
CHR14,LSalAtl2s248,c12479.19820,Q9Z1P8|ANGL4_MOUSE Angiopoietin-related protein 4
CHR14,LSalAtl2s248,c12479.19820,Q9VZW5|FMAR_DROME FMRFamide receptor
CHR14,LSalAtl2s248,c12479.19820,P51659|DHB4_HUMAN Peroxisomal multifunctional enzyme type
CHR14,LSalAtl2s723,c13548.26682,Q08180|ICCR_DROME Irregular chiasm C-roughest protein (287875)
CHR14,LSalAtl2s163,c8326.48240,Q25158|OPSC2_HEMSA Compound eye opsin BCRH2
CHR14,LSalAtl2s163,c8326.48240,O57457|E41L4_DANRE Band 4.1-like protein 4
CHR14,LSalAtl2s163,c8326.48240,Q86GC8|ACES_CULPI Acetylcholinesterase
CHR14,LSalAtl2s163,c8326.48240,"P14646|PDE4B_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4B"
CHR14,LSalAtl2s163,c8326.48240,"P12252|PDE4B_DROME cAMP-specific 3',5'-cyclic phosphodiesterase"
CHR14,LSalAtl2s723,c10608.10040,Q7KZN9|COX15_HUMAN Cytochrome c oxidase assembly protein COX15 (54959)
CHR14,LSalAtl2s723,c10608.10040,Q99PJ0|NTRI_MOUSE Neurotrimin (98293)
CHR14,LSalAtl2s191 ,c10994.37816,P52701|MSH6_HUMAN DNA mismatch repair protein Msh6
CHR14,LSalAtl2s191 ,c10994.37816,Q06190|P2R3A_HUMAN Serine/threonine-protein phosphatase 2A
CHR14,LSalAtl2s191 ,c10994.37816,Q9VUI3|EMAL_DROME Echinoderm microtubule-associated protein-like
CHR14,LSalAtl2s191 ,c10994.37816,Q9ES21|SAC1_RAT Phosphatidylinositide phosphatase SAC1
CHR14,LSalAtl2s191 ,c10994.37816,P08962|CD63_HUMAN CD63 antigen