"Authors: Luna De Ferrari and John B O Mitchell (2014)",uniprot,"True mechanism ","true mechanism name","predicted mechanism","predicted mechanism name","overall reaction similarity between true and predicted","composite reaction similarity between true and predicted"
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P04190,M0016,"beta-lactamase (Class B)",M0015,"beta-lactamase (Class B)",1,0.2941
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P04190,M0016,"beta-lactamase (Class B)",M0258,"beta-lactamase (Class B)",1,0.2941
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",A5JTM5,M0024,"4-chlorobenzoyl-CoA dehalogenase",M0070,"methylmalonyl-CoA decarboxylase",0,0.1555
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P10688,M0028,"phosphoinositide phospholipase C",M0026,"phosphatidylinositol diacylglycerol-lyase",1,0.6
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",O31156,M0181,"phosphonoacetaldehyde hydrolase",M0036,"(S)-2-haloacid dehalogenase",0.1428,0.3333
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P24630,M0195,"glutamate-1-semialdehyde 2,1-aminomutase",M0249,"adenosylmethionine--8-amino-7-oxononanoate transaminase",1,0.9698
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",O48917,M0226,"UDP-sulfoquinovose synthase",M0228,"dTDP-glucose 4,6-dehydratase",0.375,0.897
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P32055,M0227,"GDP-L-fucose synthase",M0228,"dTDP-glucose 4,6-dehydratase",0.1875,0.7142
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",O76290,M0237,"pteridine reductase",M0255,"alcohol dehydrogenase",0.4,0.5517
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P22106,M0302,"asparagine synthase (glutamine-hydrolysing)",M0303,"(carboxyethyl)arginine beta-lactam-synthase",0.4166,0.3731
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P14604,M0315,"enoyl-CoA hydratase",M0070,"methylmalonyl-CoA decarboxylase",0.125,0.3333
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",P42126,M0341,"dodecenoyl-CoA isomerase",M0070,"methylmalonyl-CoA decarboxylase",0.125,0.375
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",Q62651,M0342,"delta(3,5)-delta(2,4)-dienoyl-CoA isomerase",M0070,"methylmalonyl-CoA decarboxylase",0.0714,0.125
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",Q13825,M0343,"methylglutaconyl-CoA hydratase",M0070,"methylmalonyl-CoA decarboxylase",0.125,0.3333
"False positive predictions when training on the mechanism set and testing on the negative set (there were no false positive predictions when training on the negative set and testing on the mechanism set)",O69762,M0347,"feruloyl CoA hydratase/lyase",M0070,"methylmalonyl-CoA decarboxylase",0.3076,0.2448
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"Authors: Luna De Ferrari and John B O Mitchell (2014)",uniprot_accession,uniprot_entry_name,prediction_status,predicted_mechanism,predicted_mechanism_name,protein_name,organism
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P05982,NQO1_RAT,FN,M0003,"NAD(P)H dehydrogenase (quinone)","NAD(P)H dehydrogenase [quinone] 1","Rattus norvegicus"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q64669,NQO1_MOUSE,FN,M0003,"NAD(P)H dehydrogenase (quinone)","NAD(P)H dehydrogenase [quinone] 1","Mus musculus"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",O75874,IDHC_HUMAN,FN,M0007,"isocitrate dehydrogenase (NADP+)","Isocitrate dehydrogenase [NADP] cytoplasmic","Homo sapiens"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P33198,IDHP_PIG,FN,M0007,"isocitrate dehydrogenase (NADP+)","Isocitrate dehydrogenase [NADP], mitochondrial","Sus scrofa"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P81989,PUNA_CELSP,FN,M0017,"purine-nucleoside phosphorylase","Purine nucleoside phosphorylase","Cellulomonas sp."
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P08954,PLC_BACTU,FN,M0026,"phosphatidylinositol diacylglycerol-lyase","1-phosphatidylinositol phosphodiesterase","Bacillus thuringiensis"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P34024,PLC_LISMO,FN,M0026,"phosphatidylinositol diacylglycerol-lyase","1-phosphatidylinositol phosphodiesterase","Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q27546,IUNH_CRIFA,FN,M0039,"purine nucleosidase","Inosine-uridine preferring nucleoside hydrolase","Crithidia fasciculata"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P46926,GNPI1_HUMAN,FN,M0060,"glucosamine-6-phosphate deaminase","Glucosamine-6-phosphate isomerase 1","Homo sapiens"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",B2NN97,NULL,FN,M0070,"methylmalonyl-CoA decarboxylase",NULL,NULL
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P52045,SCPB_ECOLI,FN,M0070,"methylmalonyl-CoA decarboxylase","Methylmalonyl-CoA decarboxylase","Escherichia coli (strain K12)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",O28603,NULL,FN,M0123,"adenylyl-sulfate reductase",NULL,NULL
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P49888,ST1E1_HUMAN,FN,M0154,"estrone sulfotransferase","Estrogen sulfotransferase","Homo sapiens"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P38489,NFNB_ECOLI,FN,M0211,"oxygen insensitive NAD(P)H nitroreductase","Oxygen-insensitive NAD(P)H nitroreductase","Escherichia coli (strain K12)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P02704,COLA_HORSE,FN,M0218_colipase,"triacylglycerol lipase","Colipase A","Equus caballus"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P02705,COLB_HORSE,FN,M0218_colipase,"triacylglycerol lipase","Colipase B","Equus caballus"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P19090,COL_CANFA,FN,M0218_colipase,"triacylglycerol lipase",Colipase,"Canis familiaris"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q13126,MTAP_HUMAN,FN,M0244,"S-methyl-5'-thioadenosine phosphorylase","S-methyl-5'-thioadenosine phosphorylase","Homo sapiens"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P22939,ISPA_ECOLI,FN,M0253,geranyltranstransferase,"Farnesyl diphosphate synthase","Escherichia coli (strain K12)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P08310,CATB_PSEPU,FN,M0269,"muconate cycloisomerase","Muconate cycloisomerase 1","Pseudomonas putida"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q97IL4,NULL,FN,M0312,"glycerol dehydrogenase",NULL,NULL
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q06128,TRPE_SULSO,FN,M0314_component1_I,"anthranilate synthase","Anthranilate synthase component 1","Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P05404,TFDD1_CUPPJ,FN,M0348,NULL,"Chloromuconate cycloisomerase","Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q48806,DLPA_LEGPH,FP,M0007,"isocitrate dehydrogenase (NADP+)","Protein DlpA","Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q54KL0,Y7281_DICDI,FP,M0078,"citrate (Si)-synthase","Citrate synthase-related protein DDB_G0287281","Dictyostelium discoideum"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q58433,Y1027_METJA,FP,M0126_large_subunit,"cytochrome-c3 hydrogenase","Uncharacterized protein MJ1027","Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P06857,LIPR1_CANFA,FP,M0218_pancreatic_lipase,"triacylglycerol lipase","Inactive pancreatic lipase-related protein 1","Canis familiaris"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P54315,LIPR1_HUMAN,FP,M0218_pancreatic_lipase,"triacylglycerol lipase","Inactive pancreatic lipase-related protein 1","Homo sapiens"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P54316,LIPR1_RAT,FP,M0218_pancreatic_lipase,"triacylglycerol lipase","Inactive pancreatic lipase-related protein 1","Rattus norvegicus"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q5BKQ4,LIPR1_MOUSE,FP,M0218_pancreatic_lipase,"triacylglycerol lipase","Inactive pancreatic lipase-related protein 1","Mus musculus"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P35675,YGAE_ERWAM,FP,M0228,"dTDP-glucose 4,6-dehydratase","Uncharacterized protein in galE 3'region","Erwinia amylovora"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P0A572,Y2715_MYCTU,FP,M0248,"chloride peroxidase","Uncharacterized protein Rv2715/MT2788","Mycobacterium tuberculosis"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",P0A573,Y2734_MYCBO,FP,M0248,"chloride peroxidase","Uncharacterized protein Mb2734","Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)"
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q8J232,NULL,FP,M0272,"isocitrate lyase",NULL,NULL
"False positive and false negative predictions when training on fold 1 of mechanism+swissprot_non_enzymes and testing on fold 2.",Q5LJP9,ASND1_DROME,FP,M0303,"(carboxyethyl)arginine beta-lactam-synthase","Asparagine synthetase domain-containing protein CG17486","Drosophila melanogaster"
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"Authors: Luna De Ferrari and John B O Mitchell (2014)",uniprot_accession,uniprot_entry_name,prediction_status,predicted_mechanism,predicted_mechanism_name,protein_name,organism
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P15559,NQO1_HUMAN,FN,M0003,"NAD(P)H dehydrogenase (quinone)","NAD(P)H dehydrogenase [quinone] 1","Homo sapiens"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P14262,PLC_BACCE,FN,M0026,"phosphatidylinositol diacylglycerol-lyase","1-phosphatidylinositol phosphodiesterase","Bacillus cereus"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P83851,IUNH_LEIMA,FN,M0039,"purine nucleosidase","Inosine-uridine preferring nucleoside hydrolase","Leishmania major"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",O25927,LPXA_HELPY,FN,M0069,"acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase","Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase","Helicobacter pylori (strain ATCC 700392 / 26695)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",B2ND82,NULL,FN,M0070,"methylmalonyl-CoA decarboxylase",NULL,NULL
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",O28604,NULL,FN,M0123,"adenylyl-sulfate reductase",NULL,NULL
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P49891,ST1E1_MOUSE,FN,M0154,"estrone sulfotransferase","Estrogen sulfotransferase, testis isoform","Mus musculus"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",Q01234,NFNB_ENTCL,FN,M0211,"oxygen insensitive NAD(P)H nitroreductase","Oxygen-insensitive NAD(P)H nitroreductase","Enterobacter cloacae"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P02703,COL_PIG,FN,M0218_colipase,"triacylglycerol lipase",Colipase,"Sus scrofa"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P04118,COL_HUMAN,FN,M0218_colipase,"triacylglycerol lipase",Colipase,"Homo sapiens"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P17084,COL_RAT,FN,M0218_colipase,"triacylglycerol lipase",Colipase,"Rattus norvegicus"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P06857,LIPR1_CANFA,FN,M0218_pancreatic_lipase,"triacylglycerol lipase","Inactive pancreatic lipase-related protein 1","Canis familiaris"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P54318,LIPR2_RAT,FN,M0218_pancreatic_lipase,"triacylglycerol lipase","Pancreatic lipase-related protein 2","Rattus norvegicus"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P81139,LIPR2_CAVPO,FN,M0218_pancreatic_lipase,"triacylglycerol lipase","Pancreatic lipase-related protein 2","Cavia porcellus"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P50389,PNPH_SULSO,FN,M0244,"S-methyl-5'-thioadenosine phosphorylase","Purine nucleoside phosphorylase","Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P49323,PRXC_STRLI,FN,M0248,"chloride peroxidase","Non-heme chloroperoxidase","Streptomyces lividans"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",Q51958,NULL,FN,M0269,"muconate cycloisomerase",NULL,NULL
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P0A9G6,ACEA_ECOLI,FN,M0272,"isocitrate lyase","Isocitrate lyase","Escherichia coli (strain K12)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P0DJQ8,BLS_STRC2,FN,M0303,"(carboxyethyl)arginine beta-lactam-synthase","Carboxyethyl-arginine beta-lactam-synthase","Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P00897,TRPE_SERMA,FN,M0314_component1_I,"anthranilate synthase","Anthranilate synthase component 1","Serratia marcescens"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P27099,TCBD_PSESQ,FN,M0348,NULL,"Chloromuconate cycloisomerase","Pseudomonas sp. (strain P51)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P77212,YKGC_ECOLI,FP,M0006,"glutathione-disulfide reductase","Probable pyridine nucleotide-disulfide oxidoreductase YkgC","Escherichia coli (strain K12)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",Q02733,IRC15_YEAST,FP,M0006,"glutathione-disulfide reductase","Increased recombination centers protein 15","Saccharomyces cerevisiae (strain ATCC 204508 / S288c)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",Q9LQK9,IDH4_ARATH,FP,M0007,"isocitrate dehydrogenase (NADP+)","Putative isocitrate dehydrogenase [NAD] subunit-like 4","Arabidopsis thaliana"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P31470,YIEK_ECOLI,FP,M0060,"glucosamine-6-phosphate deaminase","Uncharacterized protein YieK","Escherichia coli (strain K12)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",Q9HDU4,YHEB_SCHPO,FP,M0228,"dTDP-glucose 4,6-dehydratase","Uncharacterized protein PB2B2.11","Schizosaccharomyces pombe (strain 972 / ATCC 24843)"
"False positive and false negative predictions when training on fold 2 of mechanism+swissprot_non_enzymes and testing on fold 1.",P23139,YPE2_RHORU,FP,M0244,"S-methyl-5'-thioadenosine phosphorylase","Uncharacterized 25.8 kDa protein in petC 3'region","Rhodospirillum rubrum"