###------------------------------------------------- ### Input parameter settings file for ### ### BA Bayesian ### N Network Inference ### J with Java ### O Objects ### ### Banjo is licensed from Duke University. ### Copyright (c) 2005-07 by Alexander J. Hartemink. ### All rights reserved. ### ### Settings file consistent with version 2.0.0 ###------------------------------------------------- ###------------------------------------------------- ### Project information ###------------------------------------------------- project = THI-TS user = cwyoo dataset = 18var-1381cases notes = static bayesian network inference ###------------------------------------------------- ### Search component specifications ###------------------------------------------------- searcherChoice = SimAnneal proposerChoice = RandomLocalMove evaluatorChoice = default deciderChoice = default ###------------------------------------------------- ### Input and output locations ###------------------------------------------------- inputDirectory = data/release2.0/static/input observationsFile = static.data.txt outputDirectory = data/release2.0/static/output reportFile = static.report.pcr.@TS@.txt ###------------------------------------------------- ### We require this only to validate the input ###------------------------------------------------- variableCount = 17 ###------------------------------------------------- ### Pre-processing options ###------------------------------------------------- discretizationPolicy = none discretizationExceptions = createDiscretizationReport = no ###------------------------------------------------- ### Network structure properties ###------------------------------------------------- minMarkovLag = 0 maxMarkovLag = 0 dbnMandatoryIdentityLags = equivalentSampleSize = 1.0 maxParentCount = 5 defaultMaxParentCount = 10 ###------------------------------------------------- ### Network structure properties, optional ###------------------------------------------------- initialStructureFile = mustBePresentEdgesFile = static.mandatory.str mustNotBePresentEdgesFile = ###------------------------------------------------- ### Stopping criteria ###------------------------------------------------- maxTime = 360m maxProposedNetworks = maxRestarts = 30000 minNetworksBeforeChecking = 1000 ###------------------------------------------------- ### Search monitoring properties ###------------------------------------------------- nBestNetworks = 10 #bestNetworksAre = nonidentical bestNetworksAre = nonEquivalent screenReportingInterval = 20 m fileReportingInterval = 20 m ###------------------------------------------------- ### Parameters used by specific search methods ###------------------------------------------------- ### For simulated annealing: initialTemperature = 10000 coolingFactor = 0.7 reannealingTemperature = 800 maxAcceptedNetworksBeforeCooling = 2500 maxProposedNetworksBeforeCooling = 10000 minAcceptedNetworksBeforeReannealing = 500 ### For greedy: minProposedNetworksAfterHighScore = 1000 minProposedNetworksBeforeRestart = 3000 maxProposedNetworksBeforeRestart = 5000 restartWithRandomNetwork = yes maxParentCountForRestart = 5 ###------------------------------------------------- ### Command line user interface options ###------------------------------------------------- askToVerifySettings = no ###------------------------------------------------- ### Post-processing options ###------------------------------------------------- createDotOutput = yes computeInfluenceScores = yes computeConsensusGraph = yes createConsensusGraphAsHtml = yes fileNameForTopGraph = top.graph.@TS@ fileNameForConsensusGraph = consensus.graph.@TS@ dotGraphicsFormat = jpg dotFileExtension = txt htmlFileExtension = html #fullPathToDotExecutable = C:/Program Files (x86)/Graphviz 2.28/bin/dot.exe fullPathToDotExecutable = /usr/bin/dot timeStampFormat = yyyy.MM.dd.HH.mm.ss ###------------------------------------------------- ### Memory management and performance options ###------------------------------------------------- precomputeLogGamma = yes useCache = fastLevel2 cycleCheckingMethod = dfs ###------------------------------------------------- ### Misc. options ###------------------------------------------------- displayMemoryInfo = yes displayStructures = yes variableNames = Age Qmax PVR TPV TZV PSA IPSS_1 IPSS_2 IPSS_3 IPSS_4 IPSS_5 IPSS_6 IPSS_7 IPSS_total IPSS_emptying IPSS_storage IPSS_QoL BOO