Differential Single Nucleotide Polymorphism-Based Analysis of an Outbreak Caused by Salmonella enterica Serovar Manhattan Reveals Epidemiological Details Missed by Standard Pulsed-Field Gel Electrophoresis

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  Table S1 (Assembly data of Salmonella enterica serovar Manhattan isolates sequenced in this study) and Fig. S1 (Phylogenetic reconstruction of the 33 Salmonella enterica serovar Manhattan isolates based on the data sets of core, synonymous, and nonsynonymous SNPs, analyzed with the maximum likelihood method) and S2 (Phylogenetic reconstruction of the 33 Salmonella enterica serovar Manhattan isolates analyzed with the maximum likelihood algorithm, based on the data sets of SNPs in the first, second, third, and first plus second codon positions)

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