Refinement of Whole-Genome Multilocus Sequence Typing Analysis by Addressing Gene Paralogy

Supplemental material

Files in this Data Supplement:

• Supplemental file 1 -

  Supplemental text, Tables S1 (List of 19 C. jejuni sequence type 45 isolates used in this study) and S2 (Allele states of 34 putative multicopy loci found by GeP in each isolate assigned by GeP, BIGSdb GC, and SeqSphere ), and Fig. S1 (Flow chart of GeP logic) and S2 (Split decomposition of the allelic profile of the 19 C. jejuni genomes generated by GeP, SeqSphere , and BIGSdb GC)

  PDF, 804K

• Supplemental file 2 -

  Data Set S1 (Allele numbers assigned by GeP, BIGSdb GC, and Ridom SeqSphere+)

  XLSX, 145K

• Supplemental file 3 -

  Data Set S2 (Pairewise allele difference matrices summarized from the results of GeP, BIGSdb GC, and Ridom SeqSphere+ analyses)

  XLSX, 51K

• Supplemental file 4 -

  Data Set S3 (Allele numbers, coordinates of loci in the genome, expected and actual distances to neighboring loci, and numbers of valid hits found by the program GeP)

  XLSX, 2.1M