Supplementary Data 2:  Normalized read-counts of small RNA sequences (count-per-million) mapped within germline transposable elements.,,,,,,,,,,,,,,,,,,,,,,,,,,,
,,,,,,,,,,,,,,,,,,,,,,,,,,,
,sample,small RNA length,,,,,,,,,,,,,,,,,,,,,,,,,
,,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40
Col-0 biological replicate 1,GSM342999,0,0,0,1,0,0,7,4,5,120,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
Col-0 biological replicate 2,GSM343000,0,0,0,0,0,1,12,10,19,151,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
Col-0 biological replicate 3,GSM343001,0,0,0,0,1,2,12,12,20,123,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0
Whole-aerial_Col-0_rep1,GSM366865,0,0,0,0,1,0,7,6,14,60,3,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0
Whole-aerial_Col-0_rep2,GSM366866,0,0,0,0,1,2,2,0,6,73,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
Whole-aerial_Col-0_rep3,GSM366867,0,0,0,2,1,2,12,4,15,63,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0
Whole-aerial_Col-0,GSM366868,0,0,0,6,6,9,33,18,41,123,1,1,3,0,0,0,0,0,0,0,0,0,0,0,0,0
root_control_1,GSM424847,0,0,0,0,0,2,0,2,2,15,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
Small RNAs from rosette leaves,GSM118373,0,0,0,5,5,5,30,20,138,264,5,0,5,0,0,0,0,0,0,0,0,0,0,0,0,0
Small RNAs from whole seedlings,GSM118374,0,0,0,0,25,30,187,50,125,286,46,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
Small RNAs from Arabidopsis whole extracts,GSM149079,0,0,0,0,0,0,76,76,76,152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
"Col-0, leaf tissue",GSM154370,0,0,0,0,0,0,63,0,252,63,63,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0