Table S1: Description of H. parasuis isolates included in pan-genome analysis with basic clinical meta-data.,,,,,,,
"Where isolates with the same strain name have been provided they have been labelled also by country of the lab that prodivded them. Den - Denmark, Aus- Australia",,,,,,,
Isolate ID,LOLA number,Disease Associated,Phenotype,Serovar,Country,BAPS Population,Accession
131,HS376,Non-clinical,Non-clinical,6,Switzerland,2,ERS132177
2725,HS315,Clinical,Systemic,Unknown,Germany,5,ERS132067
29755,AB,Clinical,Respiratory,5,USA,5,ABKM00000000
06-3517,HS335,Clinical,Systemic,Unknown,Belgium,1,ERS132087
7204096,HS352,Clinical,Systemic,9,Denmark,1,ERS132129
7204136,HS353,Clinical,Respiratory,5,Denmark,5,ERS193696
7204194,HS355,Clinical,Respiratory,13,Denmark,1,ERS132132
7204226,HS357,Clinical,Respiratory,14,Denmark,5,ERS132134
7204227,HS356,Clinical,Systemic,13,Denmark,1,ERS132133
7204283,HS359,Clinical,Respiratory,NT,Denmark,1,ERS132136
7303127,HS362,Clinical,Respiratory,NT,Denmark,1,ERS132139
7303168,HS361,Clinical,Respiratory,5,Denmark,5,ERS132138
7303223,HS363,Clinical,Respiratory,4,Denmark,5,ERS132140
7303695,HS364,Clinical,Respiratory,4,Denmark,5,ERS132141
7304152,HS366,Clinical,Systemic,6,Denmark,1,ERS132143
7403200,HS368,Clinical,Systemic,NT,Denmark,1,ERS132145
7403201,HS369,Clinical,Systemic,5,Denmark,5,ERS132146
9806235,HS342,Clinical,Respiratory,4,Denmark,1,ERS132119
9806397,HS343,Clinical,Systemic,5,Denmark,5,ERS132120
9904471,HS360,Clinical,Respiratory,7,Denmark,5,ERS132137
9904503,HS345,Clinical,Respiratory,5,Denmark,5,ERS132122
9904791,HS346,Clinical,Systemic,2,Denmark,1,ERS132123
9905038,HS348,Clinical,Respiratory,NT,Denmark,5,ERS132125
9905110,HS350,Clinical,Systemic,NT,Denmark,1,ERS132127
9914774,HS349,Clinical,Respiratory,13,Denmark,5,ERS132126
9915176,HS351,Clinical,Respiratory,4,Denmark,5,ERS193695
167/03,HS334,Clinical,Respiratory,NT,Spain,1,ERS132086
174-Den,HS377,Unknown,Unknown,7,Sweden,1,ERS132178
174-Spain,HS305,Unknown,Unknown,7,Sweden,1,ERS132057
228/04,HS311,Clinical,Respiratory,5,Spain,5,ERS132063
264/99,HS310,Clinical,Systemic,5,Spain,5,ERS132062
279/03,HS333,Clinical,Respiratory,NT,Spain,2,ERS132085
29755-Intervet,HS0012,Unknown,Unknown,5,USA,5,ERS132188
373/03A,HS308,Clinical,Systemic,NT,Spain,5,ERS132060
7204167-1-Spain,HS354,Clinical,Systemic,15,Denmark,2,ERS193697
7204167-1-Den,HS336,Clinical,Systemic,Unknown,Denmark,2,ERS132088
7211027-2,HS358,Clinical,Respiratory,1,Denmark,1,ERS132135
7312429-1,HS365,Clinical,Systemic,13,Denmark,5,ERS132142
7410325-2,HS367,Clinical,Respiratory,13,Denmark,5,ERS132144
9904108-Den,HS316,Clinical,Systemic,Unknown,Denmark,1,ERS132068
9904108-Spain,HS344,Clinical,Systemic,4,Denmark,1,ERS132121
C5-Den,HS378,Unknown,Unknown,8,Sweden,2,ERS132179
C5-Spain,HS302,Unknown,Unknown,8,Sweden,2,ERS132054
CA38/4,HS325,Unknown,Unknown,Unknown,Spain,5,ERS132077
CC2-2,HS332,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132084
CD9-1,HS328,Non-clinical,Non-clinical,NT,Spain,2,ERS132080
CN8-1,HS331,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132083
CN9-2,HS330,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132082
D74-Aus,HS389,Unknown,Unknown,9,Germany,2,ERS214846
D74-Den,HS379,Unknown,Unknown,9,Germany,2,ERS132180
ER-6P,HS307,Clinical,Systemic,Unknown,Spain,5,ERS132059
F9,HS327,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132079
FL1-3,HS326,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132078
H425,HS381,Clinical,Respiratory,12,Germany,5,ERS132182
H465-Den,HS380,Unknown,Unknown,11,Germany,1,ERS132181
H465-Spain,HS304,Unknown,Unknown,11,Germany,1,ERS132056
H555,HS370,Unknown,Unknown,10,Japan,2,ERS132147
HS0001,HS0001,Clinical,Systemic,Unknown,Unknown,3,ERS132189
HS0003,HS0003,Clinical,Respiratory,Unknown,Unknown,1,ERS132199
HS0004,HS0004,Clinical,Systemic,NT,UK,4,ERS132193
HS0005,HS0005,Clinical,Respiratory,4,UK,1,ERS132195
HS0006,HS0006,Clinical,Respiratory,13,UK,3,ERS132191
HS0007,HS0007,Clinical,Systemic,2,UK,1,ERS132194
HS0008,HS0008,Non-clinical,Non-clinical,Unknown,UK,3,ERS132197
HS0009,HS0009,Clinical,Respiratory,Unknown,UK,3,ERS132192
HS001,HS001,Clinical,Systemic,Unknown,UK,1,ERS131963
HS0010,HS0010,Clinical,Systemic,Unknown,Unknown,1,ERS132196
HS002,HS002,Clinical,Systemic,Unknown,UK,3,ERS131964
HS003,HS003,Clinical,Respiratory,Unknown,UK,1,ERS131965
HS004,HS004,Clinical,Respiratory,Unknown,UK,4,ERS131966
HS005,HS005,Clinical,Respiratory,Unknown,UK,1,ERS131967
HS006,HS006,Clinical,Respiratory,Unknown,UK,1,ERS131968
HS008,HS008,Clinical,Respiratory,Unknown,UK,1,ERS131969
HS009,HS009,Unknown,Unknown,Unknown,UK,1,ERS131970
HS010,HS010,Clinical,Respiratory,Unknown,UK,1,ERS131971
HS011,HS011,Clinical,Respiratory,Unknown,UK,1,ERS131972
HS012,HS012,Unknown,Unknown,Unknown,UK,1,ERS131973
HS013,HS013,Clinical,Respiratory,Unknown,UK,1,ERS131974
HS014,HS014,Clinical,Systemic,Unknown,UK,1,ERS131975
HS015,HS015,Clinical,Respiratory,Unknown,UK,4,ERS131976
HS016,HS016,Clinical,Systemic,Unknown,UK,1,ERS131977
HS017,HS017,Clinical,Systemic,Unknown,UK,1,ERS131978
HS018,HS018,Clinical,Respiratory,Unknown,UK,1,ERS131979
HS019,HS019,Clinical,Respiratory,Unknown,UK,4,ERS131980
HS020,HS020,Clinical,Systemic,Unknown,UK,3,ERS131981
HS021,HS021,Clinical,Respiratory,Unknown,UK,4,ERS131982
HS022,HS022,Clinical,Respiratory,Unknown,UK,1,ERS131983
HS023,HS023,Clinical,Respiratory,Unknown,UK,1,ERS132095
HS024,HS024,Clinical,Respiratory,Unknown,UK,1,ERS131984
HS025,HS025,Clinical,Respiratory,Unknown,UK,1,ERS131985
HS026,HS026,Clinical,Respiratory,Unknown,UK,1,ERS131986
HS027,HS027,Clinical,Respiratory,Unknown,UK,1,ERS131987
HS028,HS028,Clinical,Systemic,Unknown,UK,1,ERS131988
HS029,HS029,Clinical,Systemic,Unknown,UK,1,ERS131989
HS030,HS030,Clinical,Systemic,Unknown,UK,1,ERS131990
HS032,HS032,Clinical,Respiratory,NT,UK,4,ERS132116
HS033,HS033,Clinical,Respiratory,6,UK,2,ERS131992
HS034,HS034,Clinical,Respiratory,14,UK,5,ERS131993
HS035,HS035,Clinical,Respiratory,7,UK,4,ERS131994
HS036,HS036,Clinical,Respiratory,NT,UK,1,ERS131995
HS037,HS037,Clinical,Systemic,13,UK,1,ERS131996
HS038,HS038,Clinical,Respiratory,2,UK,1,ERS131997
HS039,HS039,Clinical,Respiratory,7,UK,1,ERS131998
HS040,HS040,Clinical,Systemic,7,UK,4,ERS131999
HS041,HS041,Clinical,Respiratory,7,UK,1,ERS132000
HS042,HS042,Clinical,Respiratory,4,UK,1,ERS132001
HS043,HS043,Clinical,Respiratory,Unknown,UK,3,ERS132002
HS044,HS044,Clinical,Respiratory,5,UK,3,ERS132003
HS045,HS045,Unknown,Unknown,14,UK,5,ERS132004
HS046,HS046,Clinical,Respiratory,7,UK,1,ERS132005
HS047,HS047,Clinical,Respiratory,NT,UK,3,ERS132006
HS050,HS050,Clinical,Respiratory,Unknown,UK,1,ERS132009
HS051,HS051,Clinical,Systemic,Unknown,UK,2,ERS132010
HS052,HS052,Clinical,Respiratory,13,UK,1,ERS132011
HS053,HS053,Clinical,Systemic,5,UK,3,ERS132012
HS054,HS054,Clinical,Systemic,4,UK,4,ERS132013
HS055,HS055,Clinical,Systemic,9,UK,2,ERS132014
HS056,HS056,Clinical,Respiratory,5,UK,3,ERS132015
HS057,HS057,Unknown,Unknown,Unknown,Greece,2,ERS132016
HS058,HS058,Unknown,Unknown,7,UK,4,ERS132017
HS059,HS059,Unknown,Unknown,NT,UK,4,ERS132018
HS060,HS060,Unknown,Unknown,NT,UK,1,ERS132019
HS061,HS061,Clinical,Respiratory,5,UK,3,ERS132020
HS062,HS062,Unknown,Unknown,4,UK,3,ERS132021
HS063,HS063,Clinical,Respiratory,7,UK,3,ERS132022
HS064,HS064,Clinical,Respiratory,12,UK,3,ERS132090
HS065,HS065,Clinical,Respiratory,13,UK,1,ERS132023
HS068,HS068,Unknown,Unknown,6,UK,4,ERS132024
HS069,HS069,Clinical,Respiratory,5,UK,3,ERS132117
HS070,HS070,Clinical,Respiratory,12,UK,3,ERS132025
HS073,HS073,Clinical,Respiratory,7,UK,2,ERS132026
HS074,HS074,Clinical,Respiratory,4,UK,1,ERS132027
HS075,HS075,Clinical,Systemic,4,UK,1,ERS132028
HS076,HS076,Clinical,Respiratory,2,UK,1,ERS132029
HS077,HS077,Clinical,Respiratory,12,UK,1,ERS132030
HS078,HS078,Non-clinical,Non-clinical,NT,UK,1,ERS132031
HS079,HS079,Non-clinical,Non-clinical,Unknown,UK,1,ERS132032
HS080,HS080,Non-clinical,Non-clinical,Unknown,UK,1,ERS132033
HS081,HS081,Non-clinical,Non-clinical,Unknown,UK,1,ERS132034
HS082,HS082,Non-clinical,Non-clinical,Unknown,UK,1,ERS132035
HS083,HS083,Non-clinical,Non-clinical,Unknown,UK,1,ERS132036
HS084,HS084,Non-clinical,Non-clinical,Unknown,UK,1,ERS132037
HS085,HS085,Non-clinical,Non-clinical,Unknown,UK,1,ERS132038
HS086,HS086,Non-clinical,Non-clinical,Unknown,UK,1,ERS132039
HS087,HS087,Non-clinical,Non-clinical,NT,UK,2,ERS132040
HS088,HS088,Non-clinical,Non-clinical,5,UK,3,ERS132041
HS089,HS089,Non-clinical,Non-clinical,Unknown,UK,1,ERS132042
HS090,HS090,Non-clinical,Non-clinical,Unknown,UK,1,ERS132043
HS091,HS091,Non-clinical,Non-clinical,5,UK,3,ERS132044
HS092,HS092,Non-clinical,Non-clinical,5,UK,3,ERS132045
HS094,HS094,Clinical,Respiratory,12,UK,3,ERS132046
HS095,HS095,Clinical,Respiratory,Unknown,UK,1,ERS132047
HS097,HS097,Clinical,Systemic,4,UK,4,ERS132048
HS098,HS098,Clinical,Systemic,Unknown,UK,1,ERS132049
HS099,HS099,Clinical,Systemic,NT,UK,4,ERS132050
HS100,HS100,Clinical,Respiratory,2,UK,1,ERS132051
HS101,HS101,Clinical,Respiratory,NT,UK,4,ERS132052
HS145,HS385,Unknown,Unknown,1,Unknown,1,ERS214842
HS197,HS388,Unknown,Unknown,7,Unknown,1,ERS214845
HS201,HS201,Unknown,Unknown,Unknown,UK,2,ERS132096
HS203,HS203,Unknown,Unknown,Unknown,UK,2,ERS132097
HS205,HS205,Unknown,Unknown,Unknown,UK,1,ERS132098
HS208,HS208,Unknown,Unknown,Unknown,UK,2,ERS132150
HS209,HS209,Unknown,Unknown,Unknown,UK,2,ERS132151
HS211,HS211,Unknown,Unknown,Unknown,UK,1,ERS132099
HS212,HS212,Unknown,Unknown,Unknown,UK,3,ERS132100
HS217,HS217,Non-clinical,Non-clinical,Unknown,UK,4,ERS132101
HS218,HS218,Non-clinical,Non-clinical,Unknown,UK,1,ERS132102
HS219,HS219,Non-clinical,Non-clinical,Unknown,UK,4,ERS132103
HS220,HS220,Unknown,Unknown,Unknown,UK,5,ERS132104
HS221,HS221,Unknown,Unknown,Unknown,UK,5,ERS132105
HS223,HS223,Unknown,Unknown,Unknown,UK,2,ERS132106
HS227,HS227,Unknown,Unknown,Unknown,UK,1,ERS132161
HS228,HS228,Unknown,Unknown,Unknown,UK,1,ERS132107
HS232,HS232,Non-clinical,Non-clinical,Unknown,UK,1,ERS132108
HS233,HS233,Unknown,Unknown,Unknown,UK,2,ERS132109
HS235,HS235,Non-clinical,Non-clinical,Unknown,UK,1,ERS132110
HS236,HS236,Non-clinical,Non-clinical,Unknown,UK,2,ERS132111
HS237,HS237,Non-clinical,Non-clinical,Unknown,UK,2,ERS132112
HS238,HS238,Unknown,Unknown,Unknown,UK,1,ERS132113
HS239,HS239,Non-clinical,Non-clinical,Unknown,UK,1,ERS132114
HS240,HS240,Non-clinical,Non-clinical,Unknown,UK,2,ERS132115
HS250,HS250,Clinical,Systemic,11,UK,3,ERS132168
HS254,HS254,Clinical,Systemic,14,UK,3,ERS132171
HS323,HS323,Unknown,Unknown,Unknown,Spain,2,ERS132075
HS367,HS390,Non-clinical,Non-clinical,10,Unknown,5,ERS214847
HS405,HS405,Unknown,Unknown,Unknown,Unknown,5,ERS134375
IA-84-17975-Aus,HS391,Unknown,Unknown,14,USA,5,ERS214848
IA-84-17975-Den,HS382,Unknown,Unknown,13,USA,5,ERS132183
IA-84-22113,HS306,Clinical,Systemic,14,USA,5,ERS132058
IT14187-7,HS337,Clinical,Respiratory,Unknown,Italy,1,ERS132089
IT29205,HS314,Clinical,Systemic,Unknown,Italy,5,ERS132066
MU21-2,HS324,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132076
Nagasaki-Aus,HS387,Clinical,Systemic,5,Japan,5,ERS214844
Nagasaki-Den,HS375,Unknown,Unknown,5,Switzerland,5,ERS132176
No.4,HS371,Non-clinical,Non-clinical,1,Unknown,1,ERS193698
P015/96,HS312,Clinical,Respiratory,5,Argentina,5,ERS132064
PC4-6P,HS313,Clinical,Systemic,Unknown,Spain,5,ERS132065
PV1-12,HS309,Clinical,Systemic,Unknown,Spain,1,ERS132061
RU15-4P,HS317,Clinical,Systemic,Unknown,Spain,5,ERS132069
RU9-1,HS329,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132081
SD-84-15995,HS301,Clinical,Respiratory,15,USA,5,ERS132053
serovar3-Intervet,HS0011,Unknown,Unknown,3,Unknown,2,ERS132198
SH0165,CP,Clinical,Respiratory,5,China,5,CP001321
SL3-2,HS320,Non-clinical,Non-clinical,Unknown,Spain,1,ERS132072
SW114-Den,HS373,Non-clinical,Non-clinical,3,Japan,2,ERS132174
SW114-Spain,HS303,Non-clinical,Non-clinical,3,Japan,2,ERS132055
SW124,HS374,Non-clinical,Non-clinical,4,Japan,1,ERS132175
SW140-Aus,HS386,Non-clinical,Non-clinical,2,Japan,1,ERS214843
SW140-Den,HS372,Non-clinical,Non-clinical,2,Japan,1,ERS132173
VS6-2,HS321,Non-clinical,Non-clinical,Unknown,Spain,2,ERS132073
ZJ0906,ZJ0906,Clinical,Respiratory,12,China,5,CP005384