#ID	FDR	log2FC	regulated	COG_class	COG_class_annotation	GO_annotation	KEGG_annotation	Swissprot_annotation	TrEMBL_annotation	nr_annotation
comp218711_c0	3.65E-12	3.944318061	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: transcription cofactor activity (GO:0003712);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: oxidoreduction coenzyme metabolic process (GO:0006733);; Biological Process: vitamin metabolic process (GO:0006766);; Biological Process: heme biosynthetic process (GO:0006783);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Biological Process: lipoate metabolic process (GO:0009106);; Biological Process: coenzyme biosynthetic process (GO:0009108);; Biological Process: nucleotide metabolic process (GO:0009117);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: shade avoidance (GO:0009641);; Biological Process: response to light intensity (GO:0009642);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: blue light signaling pathway (GO:0009785);; Biological Process: negative gravitropism (GO:0009959);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: fruit dehiscence (GO:0010047);; Biological Process: negative regulation of photomorphogenesis (GO:0010100);; Biological Process: fruit development (GO:0010154);; Biological Process: red light signaling pathway (GO:0010161);; Biological Process: negative regulation of seed germination (GO:0010187);; Molecular Function: phytochrome binding (GO:0010313);; Biological Process: transmitting tissue development (GO:0010500);; Biological Process: regulation of auxin biosynthetic process (GO:0010600);; Biological Process: regulation of auxin mediated signaling pathway (GO:0010928);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellular cation homeostasis (GO:0030003);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: carpel formation (GO:0048462);; Biological Process: root hair cell development (GO:0080147);; "	--	Transcription factor PIF5 GN=F17J16.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g002760 GN=Sb02g002760 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g002760 [Sorghum bicolor] 
comp226536_c0	5.60E-05	-3.906652562	down	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: zinc ion binding (GO:0008270);; "	--	Protein argonaute 12 GN=OSJNBb0070O09.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb07g026470 GN=Sb07g026470 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g026470 [Sorghum bicolor] 
comp136448_c0	0.003179274	-2.372748482	down	--	--	--	--	Formin-like protein 14 GN=FH14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	hypothetical protein OsI_16930 [Oryza sativa Indica Group]
comp227923_c0	7.65E-11	3.434987657	up	--	--	"Biological Process: anaerobic respiration (GO:0009061);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: regulation of meristem growth (GO:0010075);; "	--	--	H0303A11-B0406H05.7 protein GN=H0303A11-B0406H05.7 OS=Oryza sativa (Rice) PE=4 SV=1	H0303A11-B0406H05.7 [Oryza sativa Indica Group]
comp223171_c0	1.51E-05	2.437904905	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: methylation (GO:0032259);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; "	--	Probable methyltransferase PMT2 GN=At1g26850 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si029241m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable methyltransferase PMT2-like isoform X1 [Setaria italica] 
comp227760_c0	1.78E-06	-3.838616595	down	--	--	"Molecular Function: anion channel activity (GO:0005253);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: purine nucleobase transport (GO:0006863);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to aluminum ion (GO:0010044);; Biological Process: stomatal movement (GO:0010118);; Cellular Component: endomembrane system (GO:0012505);; Molecular Function: malate transmembrane transporter activity (GO:0015140);; Biological Process: malate transport (GO:0015743);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Biological Process: malate transmembrane transport (GO:0071423);; "	--	Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Putative uncharacterized protein Sb04g032070 GN=Sb04g032070 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein ZEAMMB73_069368 [Zea mays]
comp201466_c0	0.002223	1.971156274	up	--	--	"Biological Process: reproduction (GO:0000003);; Molecular Function: diacylglycerol kinase activity (GO:0004143);; Biological Process: response to stress (GO:0006950);; Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway (GO:0007205);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to ethylene stimulus (GO:0009723);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Biological Process: phosphorylation (GO:0016310);; Biological Process: root development (GO:0048364);; "	--	Diacylglycerol kinase 5 GN=DGK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si009926m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: diacylglycerol kinase 5-like [Setaria italica]
comp211714_c0	0.007118733	-1.819167385	down	[R]	General function prediction only 	"Molecular Function: purine nucleobase transmembrane transporter activity (GO:0005345);; Cellular Component: plastid (GO:0009536);; Biological Process: adenine transport (GO:0015853);; Biological Process: guanine transport (GO:0015854);; Biological Process: nucleobase-containing compound transport (GO:0015931);; Cellular Component: membrane (GO:0016020);; Biological Process: transmembrane transport (GO:0055085);; "	K06901|0.0|sbi:SORBI_09g013790|hypothetical protein	Adenine/guanine permease AZG1 GN=AZG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si024526m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: adenine/guanine permease AZG1-like [Setaria italica]
comp195484_c0	1.99E-05	-2.642551764	down	[IQR]	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: proline biosynthetic process (GO:0006561);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: regulation of abscisic acid biosynthetic process (GO:0010115);; Molecular Function: xanthoxin dehydrogenase activity (GO:0010301);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: diterpene phytoalexin precursor biosynthetic process pathway (GO:0051504);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Momilactone A synthase OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Predicted protein (Fragment) OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp219800_c0	0.000149749	-2.307915224	down	--	--	"Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si017766m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765176 [Setaria italica]
comp227010_c0	1.80E-06	-2.725310829	down	--	--	"Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: defense response to virus (GO:0051607);; "	--	Protein NDR1 (Precursor) GN=NDR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	VAMP protein SEC22 GN=ZEAMMB73_871315 OS=Zea mays (Maize) PE=2 SV=1	LOC100284275 [Zea mays] 
comp459912_c0	0.005774853	-2.207827095	down	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	F-box protein At3g26010 GN=At3g26010 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si013684m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative F-box/kelch-repeat protein At1g15680-like [Setaria italica]
comp212667_c0	8.26E-05	-2.329763772	down	[C]	Energy production and conversion 	"Molecular Function: D-arabinono-1,4-lactone oxidase activity (GO:0003885);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor (GO:0016632);; Biological Process: L-ascorbic acid biosynthetic process (GO:0019853);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: intracellular organelle part (GO:0044446);; Molecular Function: L-gulonolactone oxidase activity (GO:0050105);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016721m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: L-gulonolactone oxidase-like isoform X1 [Setaria italica]
comp219303_c0	1.35E-05	2.44705897	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to chitin (GO:0010200);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: root hair cell development (GO:0080147);; "	--	Transcription factor bHLH106 GN=T3K9.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb01g003830 GN=Sb01g003830 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: transcription factor bHLH106-like [Setaria italica]
comp211094_c0	0.00864112	-1.773252828	down	--	--	"Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Molecular Function: binding (GO:0005488);; Biological Process: proteolysis (GO:0006508);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: defense response (GO:0006952);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: apoplast (GO:0048046);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1	Uncharacterized protein GN=Si035816m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Setaria italica]
comp217225_c2	0.00584623	-2.531334394	down	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: binding (GO:0005488);; Cellular Component: nucleoplasm (GO:0005654);; Biological Process: cellular process (GO:0009987);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	CASP-like protein Os02g0134500 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si008337m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101782830 [Setaria italica]
comp223979_c2	0.006736293	-2.21917294	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: pollen germination (GO:0009846);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Cellular Component: integral to Golgi membrane (GO:0030173);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: mannan synthase activity (GO:0051753);; "	K00770|1e-107|sbi:SORBI_08g017750|hypothetical protein	Cellulose synthase-like protein D4 GN=OsJ_035046 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative cellulose synthase-like family protein GN=ZEAMMB73_398894 OS=Zea mays (Maize) PE=4 SV=1	putative cellulose synthase-like family protein [Zea mays]
comp202001_c0	7.30E-05	2.331879699	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: binding (GO:0005488);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g003695 (Fragment) GN=Sb03g003695 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g003695 [Sorghum bicolor] 
comp177385_c0	0.001027398	2.62269841	up	[RTKL]	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: cell adhesion (GO:0007155);; Cellular Component: plastid (GO:0009536);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: inflorescence development (GO:0010229);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: actin nucleation (GO:0045010);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: cell wall organization (GO:0071555);; "	--	Mitogen-activated protein kinase kinase kinase YODA GN=YDA OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=OB07G11010 OS=Oryza brachyantha PE=4 SV=1	putative MAP3K protein kinase(Mitogen-activated protein kinase) [Oryza sativa Japonica Group] 
comp156399_c0	0.000258823	-2.204696958	down	[M]	Cell wall/membrane/envelope biogenesis 	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: multicellular organismal development (GO:0007275);; Molecular Function: hydrolase activity, acting on glycosyl bonds (GO:0016798);; Cellular Component: intrinsic to membrane (GO:0031224);; Biological Process: anatomical structure development (GO:0048856);; Cellular Component: cell periphery (GO:0071944);; "	--	Probable polygalacturonase OS=Vitis vinifera (Grape) PE=1 SV=1	Uncharacterized protein GN=Si016984m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable polygalacturonase-like [Setaria italica]
comp218956_c0	2.13E-05	2.371174599	up	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: MAPK cascade (GO:0000165);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: proline transport (GO:0015824);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: regulation of long-day photoperiodism, flowering (GO:0048586);; Biological Process: protein autoubiquitination (GO:0051865);; Molecular Function: transmembrane receptor protein serine/threonine kinase binding (GO:0070696);; "	--	U-box domain-containing protein 25 GN=PUB25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb01g041450 GN=Sb01g041450 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g041450 [Sorghum bicolor] 
comp215247_c0	0.006556638	1.769759464	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: proline transport (GO:0015824);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of DNA-dependent transcription in response to stress (GO:0043620);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: lateral root development (GO:0048527);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; "	--	Probable WRKY transcription factor 71 GN=WRKY71 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Predicted protein (Fragment) OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp227958_c0	0.006077098	1.799818648	up	[S]	Function unknown 	"Biological Process: immune response-regulating signaling pathway (GO:0002764);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: epidermis development (GO:0008544);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: defense response signaling pathway, resistance gene-independent (GO:0010204);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: cell growth (GO:0016049);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transmembrane receptor protein kinase activity (GO:0019199);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: gametophyte development (GO:0048229);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cellular macromolecule localization (GO:0070727);; Biological Process: cell wall organization (GO:0071555);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; "	--	Putative receptor-like protein kinase At3g47110 (Precursor) GN=At3g47110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=Si000145m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Setaria italica]
comp205157_c0	3.85E-08	3.593959974	up	--	--	--	--	--	Uncharacterized protein GN=F775_03457 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_03457 [Aegilops tauschii]
comp207077_c1	0.001214744	1.998627365	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: signal transduction (GO:0007165);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; "	--	Probable F-box protein At1g60180 GN=At2g36090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Os11g0155100 protein GN=OsJ_33014 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os11g0155100 [Oryza sativa Japonica Group] 
comp224252_c0	0.003437359	-1.894348091	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: xylan metabolic process (GO:0045491);; "	--	--	Uncharacterized protein GN=Si034929m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101785890 [Setaria italica]
comp223163_c1	0.002177294	1.962934427	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: galactose metabolic process (GO:0006012);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: kinase activity (GO:0016301);; Biological Process: mannitol biosynthetic process (GO:0019593);; Molecular Function: galactinol-raffinose galactosyltransferase activity (GO:0047268);; Molecular Function: galactinol-sucrose galactosyltransferase activity (GO:0047274);; "	--	Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative uncharacterized protein Sb03g004540 GN=Sb03g004540 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g004540 [Sorghum bicolor] 
comp227096_c0	0.000640984	2.099859106	up	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: oligosaccharide metabolic process (GO:0009311);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: cellular water homeostasis (GO:0009992);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: lateral root development (GO:0048527);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: carbohydrate derivative biosynthetic process (GO:1901137);; "	--	Wall-associated receptor kinase 4 (Precursor) GN=WAK4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g036600 GN=Sb04g036600 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_04g036600 [Sorghum bicolor] 
comp210476_c2	0.004303266	-2.815827638	down	--	--	"Biological Process: cell division (GO:0051301);; "	K03363|6e-47|osa:4336870|Os04g0599800	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	OSJNBa0083N12.7 [Oryza sativa Japonica Group] 
comp220311_c0	0.00024852	2.314576786	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: phospholipid binding (GO:0005543);; Biological Process: response to osmotic stress (GO:0006970);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular polysaccharide metabolic process (GO:0044264);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; "	--	Cellulose synthase-like protein D4 GN=CSLD4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Cellulose synthase 4 GN=CesA4 OS=Pythium aphanidermatum PE=4 SV=1	cellulose synthase 4 [Pythium aphanidermatum]
comp197451_c0	3.65E-10	3.861995928	up	--	--	"Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; Molecular Function: transmembrane transporter activity (GO:0022857);; "	--	MATE efflux family protein 9 GN=F3L12.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g031980 GN=Sb04g031980 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g031980 [Sorghum bicolor] 
comp230158_c0	0.001240445	-2.213426124	down	[O]	Posttranslational modification, protein turnover, chaperones 	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g009720 GN=Sb03g009720 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g009720 [Sorghum bicolor] 
comp334358_c0	0.001070591	-2.103306005	down	[S]	Function unknown 	"Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: pattern specification process (GO:0007389);; Biological Process: embryo development (GO:0009790);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: seed maturation (GO:0010431);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: regulation of growth (GO:0040008);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: gametophyte development (GO:0048229);; Biological Process: leaf development (GO:0048366);; Biological Process: stamen development (GO:0048443);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: regulation of post-embryonic development (GO:0048580);; Biological Process: developmental growth (GO:0048589);; Biological Process: cell division (GO:0051301);; Biological Process: cell wall organization (GO:0071555);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; Biological Process: regulation of reproductive process (GO:2000241);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (Precursor) GN=At1g12460 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g048690 GN=Sb01g048690 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g048690 [Sorghum bicolor] 
comp230543_c1	0.006245255	1.763502489	up	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: regulation of cell proliferation (GO:0042127);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: floral organ formation (GO:0048449);; Biological Process: histone H3-K9 methylation (GO:0051567);; "	--	Glucan endo-1,3-beta-glucosidase 11 (Precursor) GN=At1g32860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_523045 OS=Zea mays (Maize) PE=2 SV=1	putative O-glycosyl hydrolase family 17 protein [Zea mays] 
comp222646_c0	1.25E-07	2.971269447	up	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si008747m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775408 [Setaria italica]
comp233177_c0	0.005946494	-1.851464537	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Microtubule-associated protein TORTIFOLIA1 GN=T24A18.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb04g028430 GN=Sb04g028430 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g028430 [Sorghum bicolor] 
comp172079_c0	3.26E-05	-2.429358912	down	--	--	"Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: transport (GO:0006810);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: sugar transmembrane transporter activity (GO:0051119);; "	--	Bidirectional sugar transporter SWEET3a GN=OsJ_17551 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2	Uncharacterized protein GN=Si024657m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: bidirectional sugar transporter SWEET3a-like [Setaria italica]
comp175561_c0	0.000806659	-4.002673033	down	--	--	"Molecular Function: carboxylesterase activity (GO:0004091);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: chloroplast (GO:0009507);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: lipase activity (GO:0016298);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: sexual reproduction (GO:0019953);; "	--	GDSL esterase/lipase At1g59406 (Precursor) GN=At1g59406 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb01g021130 GN=Sb01g021130 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g021130 [Sorghum bicolor] 
comp224149_c0	0.000614997	-2.163954252	down	--	--	"Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: glycerol-3-phosphate O-acyltransferase activity (GO:0004366);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: pattern specification process (GO:0007389);; Biological Process: metabolic process (GO:0008152);; Biological Process: regulation of cell size (GO:0008361);; Cellular Component: chloroplast (GO:0009507);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: cutin biosynthetic process (GO:0010143);; Biological Process: suberin biosynthetic process (GO:0010345);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: phosphatase activity (GO:0016791);; Biological Process: cuticle development (GO:0042335);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: pollen sperm cell differentiation (GO:0048235);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall organization (GO:0071555);; Biological Process: response to karrikin (GO:0080167);; Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity (GO:0090447);; "	--	Glycerol-3-phosphate 2-O-acyltransferase 6 GN=GPAT6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035268m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Setaria italica]
comp223703_c0	0.001814193	-2.270040171	down	--	--	"Biological Process: response to stimulus (GO:0050896);; "	K09422|3e-46|zma:100279722|hypothetical protein LOC100279722	Myb-related protein 330 GN=MYB330 OS=Antirrhinum majus (Garden snapdragon) PE=2 SV=1	Uncharacterized protein GN=Si026734m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription repressor MYB4-like [Setaria italica]
comp210450_c1	0.000120557	-2.288169698	down	[S]	Function unknown 	"Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ion transport (GO:0006811);; Biological Process: iron ion transport (GO:0006826);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to iron ion (GO:0010039);; Biological Process: response to zinc ion (GO:0010043);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: seed development (GO:0048316);; Molecular Function: iron-nicotianamine transmembrane transporter activity (GO:0051980);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: transmembrane transport (GO:0055085);; "	--	Iron-phytosiderophore transporter yellow stripe 1 GN=YS1 OS=Zea mays (Maize) PE=2 SV=1	Putative uncharacterized protein Sb04g033320 GN=Sb04g033320 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g033320 [Sorghum bicolor] 
comp130208_c0	0.001363735	-2.07866428	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: cellular component organization (GO:0016043);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cell part (GO:0044464);; "	--	Proline-rich receptor-like protein kinase PERK2 GN=PERK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	SAD1f GN=SAD1f OS=Volvox carteri f. nagariensis PE=4 SV=1	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1-like [Setaria italica]
comp222971_c0	0.000229286	2.165659961	up	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Biological Process: response to stress (GO:0006950);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: response to red light (GO:0010114);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: secondary metabolic process (GO:0019748);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: gibberellin catabolic process (GO:0045487);; Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634);; Molecular Function: C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Gibberellin 2-beta-dioxygenase 1 GN=GA2OX1 OS=Pisum sativum (Garden pea) PE=1 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	PREDICTED: gibberellin 2-beta-dioxygenase 1-like [Setaria italica]
comp131676_c0	7.42E-10	3.886103984	up	--	--	--	--	--	ATFP4 OS=Zea mays (Maize) PE=2 SV=1	ATFP4 [Zea mays]
comp228199_c1	0.001450001	2.014931947	up	--	--	"Biological Process: tryptophan biosynthetic process (GO:0000162);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048);; Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: signal transduction (GO:0007165);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to salt stress (GO:0009651);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of biological process (GO:0048519);; "	--	Chitin-inducible gibberellin-responsive protein 2 GN=OJ1127_E01.113 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si035089m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: chitin-inducible gibberellin-responsive protein 2-like [Setaria italica]
comp219579_c1	4.61E-05	3.399269771	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	H0201G08.4 protein GN=H0201G08.4 OS=Oryza sativa (Rice) PE=2 SV=1	H0201G08.4 [Oryza sativa Indica Group] 
comp162256_c0	0.000174667	2.345864676	up	--	--	--	--	--	Uncharacterized protein GN=Si004158m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770987 [Setaria italica]
comp230694_c0	1.15E-07	2.905393642	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: cytosol (GO:0005829);; Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460);; Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: mucilage biosynthetic process (GO:0010192);; Biological Process: seed coat development (GO:0010214);; Biological Process: response to UV-B (GO:0010224);; Biological Process: UDP-rhamnose biosynthetic process (GO:0010253);; Molecular Function: UDP-L-rhamnose synthase activity (GO:0010280);; Biological Process: auxin efflux (GO:0010315);; Molecular Function: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity (GO:0010489);; Molecular Function: UDP-4-keto-rhamnose-4-keto-reductase activity (GO:0010490);; Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226);; Molecular Function: UDP-glucose 4,6-dehydratase activity (GO:0050377);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: flavonol biosynthetic process (GO:0051555);; "	K12450|0.0|osa:4332425|Os03g0278200	Probable rhamnose biosynthetic enzyme 1 GN=RHM1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Rhamnose biosynthetic enzyme 1, putative, expressed GN=OsJ_10344 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os03g0278200 [Oryza sativa Japonica Group] 
comp227427_c1	0.00614332	-2.058671422	down	--	--	"Biological Process: telomere maintenance (GO:0000723);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);; Biological Process: base-excision repair, gap-filling (GO:0006287);; Biological Process: nucleotide-excision repair, DNA gap filling (GO:0006297);; Biological Process: double-strand break repair (GO:0006302);; Biological Process: DNA recombination (GO:0006310);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: chromosome segregation (GO:0007059);; Biological Process: meiosis I (GO:0007127);; Biological Process: regulation of mitotic cell cycle (GO:0007346);; Molecular Function: 3'-5' exonuclease activity (GO:0008408);; Biological Process: regulation of cell cycle process (GO:0010564);; Biological Process: RNA interference (GO:0016246);; Biological Process: translesion synthesis (GO:0019985);; Biological Process: histone lysine methylation (GO:0034968);; Biological Process: DNA replication, removal of RNA primer (GO:0043137);; Cellular Component: delta DNA polymerase complex (GO:0043625);; Biological Process: DNA replication proofreading (GO:0045004);; Biological Process: floral whorl development (GO:0048438);; Biological Process: floral organ formation (GO:0048449);; Biological Process: phyllome development (GO:0048827);; Biological Process: regulation of DNA metabolic process (GO:0051052);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Biological Process: production of small RNA involved in gene silencing by RNA (GO:0070918);; "	K02327|4e-11|sbi:SORBI_04g004200|hypothetical protein	DNA polymerase delta catalytic subunit GN=POLD1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	DNA polymerase GN=OB11G14370 OS=Oryza brachyantha PE=3 SV=1	PREDICTED: DNA polymerase delta catalytic subunit-like [Setaria italica]
comp225275_c0	2.06E-08	3.266404285	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: anatomical structure development (GO:0048856);; "	--	Protein LE25 GN=LE25 OS=Solanum lycopersicum (Tomato) PE=2 SV=1	Uncharacterized protein GN=Si007698m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein LE25-like [Setaria italica]
comp208742_c0	1.54E-05	-2.547565141	down	--	--	"Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: defense response (GO:0006952);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g042570 GN=Sb03g042570 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g042570 [Sorghum bicolor] 
comp227187_c3	7.61E-05	3.517069986	up	[K]	Transcription 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-dependent (GO:0006351);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: organellar chromatophore (GO:0070111);; "	--	"DNA-directed RNA polymerase subunit beta' GN=rpoC1 OS=Mesostigma viride PE=3 SV=1"	[pt] DNA-directed RNA polymerase subunit GN=Gasu_40590 OS=Galdieria sulphuraria (Red alga) PE=3 SV=1	"RNA polymerase beta' subunit [Mesostigma viride] "
comp124468_c0	0.000602835	2.945535546	up	--	--	--	--	--	Uncharacterized protein GN=Si039963m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp229968_c0	0.005060186	1.874616255	up	--	--	"Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: defense response (GO:0006952);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: oxoacid metabolic process (GO:0043436);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: localization (GO:0051179);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Aspartic proteinase-like protein 2 (Precursor) GN=At1g65240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si001064m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: aspartic proteinase-like protein 2-like isoform X1 [Setaria italica]
comp235295_c0	0.000237354	2.142067915	up	--	--	--	--	Proline-rich receptor-like protein kinase PERK8 GN=PERK8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Predicted protein (Fragment) OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp203558_c0	1.80E-05	-4.540162533	down	[T]	Signal transduction mechanisms 	"Biological Process: RNA processing (GO:0006396);; Cellular Component: plastid (GO:0009536);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of biological process (GO:0050789);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb04g009730 GN=Sb04g009730 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g009730 [Sorghum bicolor] 
comp230811_c0	0.001262013	-2.048301636	down	[RTKL]	--	"Biological Process: response to molecule of fungal origin (GO:0002238);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to parasitic fungus (GO:0009623);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: seed germination (GO:0009845);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: endomembrane system (GO:0012505);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: root hair cell differentiation (GO:0048765);; Molecular Function: GTPase binding (GO:0051020);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; "	--	Probable receptor-like serine/threonine-protein kinase At5g57670 GN=At5g57670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si013447m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like isoform X1 [Setaria italica]
comp235053_c3	8.06E-09	-3.525167008	down	[S]	Function unknown 	"Biological Process: polysaccharide catabolic process (GO:0000272);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: signal transduction (GO:0007165);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: tissue development (GO:0009888);; Biological Process: meristem initiation (GO:0010014);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: procambium histogenesis (GO:0010067);; Biological Process: regulation of floral meristem growth (GO:0010080);; Biological Process: xylem development (GO:0010089);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: seed maturation (GO:0010431);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: shoot development (GO:0048367);; Biological Process: organ development (GO:0048513);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: anther development (GO:0048653);; Biological Process: specification of floral organ number (GO:0048833);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization or biogenesis (GO:0071554);; "	--	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor) GN=PXL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si034042m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Setaria italica]
comp195676_c0	0.005789398	1.774748259	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance (GO:0009861);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: response to chitin (GO:0010200);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: defense response to fungus (GO:0050832);; "	K14516|5e-57|sbi:SORBI_01g000352|hypothetical protein	Ethylene-responsive transcription factor 1B GN=K14B15.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein (Fragment) GN=Si038911m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor 1B-like [Setaria italica]
comp221049_c0	0.00157216	-2.097321943	down	--	--	"Cellular Component: plastid (GO:0009536);; "	--	--	Putative uncharacterized protein Sb02g028360 GN=Sb02g028360 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g028360 [Sorghum bicolor] 
comp131155_c0	0.000884231	-2.475061898	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si023898m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101766876 [Setaria italica]
comp216614_c0	0.008454858	-2.010735058	down	--	--	--	--	--	Putative uncharacterized protein GN=OsJ_35873 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	hypothetical protein OsJ_35873 [Oryza sativa Japonica Group]
comp214114_c0	0.001275801	-2.608921081	down	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: secondary cell wall (GO:0009531);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: xylem development (GO:0010089);; Biological Process: response to far red light (GO:0010218);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: Rac GTPase activator activity (GO:0030675);; Biological Process: positive regulation of Rac GTPase activity (GO:0032855);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: root hair cell differentiation (GO:0048765);; "	--	Rho GTPase-activating protein 2 GN=ROPGAP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si022047m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775243 [Setaria italica]
comp225446_c1	6.43E-05	3.790712053	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: alpha-amylase activity (GO:0004556);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: sucrose catabolic process (GO:0005987);; Biological Process: circadian rhythm (GO:0007623);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to gibberellin stimulus (GO:0009739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: secretion by cell (GO:0032940);; Cellular Component: apoplast (GO:0048046);; "	--	Alpha-amylase isozyme 3D (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si013789m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: alpha-amylase isozyme 3D-like [Setaria italica]
comp130547_c0	2.77E-09	3.283231654	up	--	--	--	--	--	Uncharacterized protein GN=Si033127m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101759275 [Setaria italica]
comp223394_c0	6.55E-06	-3.886847119	down	--	--	"Molecular Function: lipase activity (GO:0016298);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: acylglycerol catabolic process (GO:0046464);; Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; "	--	Phospholipase A1-II 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein GN=SELMODRAFT_443915 OS=Selaginella moellendorffii (Spikemoss) PE=4 SV=1	Chain A, Structure And Molecular Model Refinement Of Rhizomucor Miehei Triacylglyceride Lipase: A Case Study Of The Use Of Simulated Annealing In Partial Model Refinement
comp227059_c0	0.003776977	-1.990571655	down	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: nucleotide binding (GO:0000166);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: peptide receptor activity (GO:0001653);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: guanylate cyclase activity (GO:0004383);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: ion transport (GO:0006811);; Biological Process: defense response (GO:0006952);; Biological Process: immune response (GO:0006955);; Biological Process: organelle organization (GO:0006996);; Biological Process: signal transduction (GO:0007165);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: procambium histogenesis (GO:0010067);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: xylem development (GO:0010089);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: microsporocyte differentiation (GO:0010480);; Biological Process: regulation of hormone levels (GO:0010817);; Molecular Function: beta-amylase activity (GO:0016161);; Biological Process: phosphorylation (GO:0016310);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cell cycle process (GO:0022402);; Biological Process: cellulose metabolic process (GO:0030243);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: response to lipid (GO:0033993);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Molecular Function: protein self-association (GO:0043621);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: gametophyte development (GO:0048229);; Biological Process: leaf development (GO:0048366);; Biological Process: shoot development (GO:0048367);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: organ development (GO:0048513);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: root hair elongation (GO:0048767);; Biological Process: response to alcohol (GO:0097305);; Biological Process: regulation of seed maturation (GO:2000034);; Biological Process: positive regulation of secondary growth (GO:2000605);; "	--	Receptor-like protein kinase 2 (Precursor) GN=RCH2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si009213m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Setaria italica]
comp226459_c0	0.000779292	2.080740924	up	--	--	"Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: response to organic cyclic compound (GO:0014070);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Formin-like protein 18 (Precursor) GN=B1160F02.7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative AP2/EREBP transcription factor superfamily protein GN=ZEAMMB73_039079 OS=Zea mays (Maize) PE=4 SV=1	putative AP2/EREBP transcription factor superfamily protein [Zea mays]
comp195318_c1	9.60E-12	4.115964356	up	--	--	"Biological Process: alternative nuclear mRNA splicing, via spliceosome (GO:0000380);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: tRNA modification (GO:0006400);; Biological Process: mRNA export from nucleus (GO:0006406);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo sac development (GO:0009553);; Biological Process: response to salt stress (GO:0009651);; Biological Process: etioplast organization (GO:0009662);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to chitin (GO:0010200);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: histone H3-K36 methylation (GO:0010452);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Biological Process: positive regulation of histone methylation (GO:0031062);; Biological Process: DNA duplex unwinding (GO:0032508);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: negative regulation of circadian rhythm (GO:0042754);; Molecular Function: histone methyltransferase activity (H3-K4 specific) (GO:0042800);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: carotenoid isomerase activity (GO:0046608);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: histone methyltransferase activity (H3-K36 specific) (GO:0046975);; Cellular Component: apoplast (GO:0048046);; Biological Process: seed development (GO:0048316);; Biological Process: leaf development (GO:0048366);; Biological Process: ovule development (GO:0048481);; Biological Process: anther development (GO:0048653);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; Biological Process: 5-carbamoylmethyluridine metabolic process (GO:0080178);; "	--	Cinnamoyl-CoA reductase 2 GN=CCR2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si020133m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cinnamoyl-CoA reductase 1-like [Setaria italica]
comp229079_c0	0.001890824	-2.195005459	down	--	--	--	--	--	Retrotransposon protein, putative, unclassified GN=LOC_Os11g35740 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
comp202595_c0	3.24E-07	3.515651299	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: transposase activity (GO:0004803);; Biological Process: transposition, DNA-mediated (GO:0006313);; Biological Process: DNA integration (GO:0015074);; "	--	--	OSIGBa0101C23.14 protein GN=OSIGBa0101C23.14 OS=Oryza sativa (Rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101782666 [Setaria italica]
comp153557_c0	0.00057501	-3.583084645	down	--	--	--	--	--	Uncharacterized protein GN=Si004183m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp223979_c1	4.48E-05	-2.538168716	down	--	--	"Cellular Component: cell wall (GO:0005618);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: xylem development (GO:0010089);; Biological Process: positive regulation of abscisic acid biosynthetic process (GO:0010116);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|1e-29|sbi:SORBI_01g019720|hypothetical protein	Cellulose synthase A catalytic subunit 7 [UDP-forming] GN=OSJNBa0006L06.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp281474_c0	0.001835584	2.920736542	up	--	--	--	--	--	Putative uncharacterized protein (Fragment) OS=Medicago truncatula (Barrel medic) PE=2 SV=1	unknown [Medicago truncatula]
comp194682_c3	0.00877059	-3.600875188	down	--	--	--	--	--	--	--
comp229524_c0	0.000197983	-2.272511014	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein GN=OsI_21140 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	PREDICTED: myc-associated zinc finger protein-like [Setaria italica]
comp188930_c0	0.000401616	-3.356814247	down	[R]	General function prediction only 	"Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoskeleton (GO:0005856);; Biological Process: RNA processing (GO:0006396);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: cellular component organization (GO:0016043);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: cellular response to hormone stimulus (GO:0032870);; Cellular Component: protein complex (GO:0043234);; Biological Process: cellular component biogenesis (GO:0044085);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: system development (GO:0048731);; Biological Process: establishment of localization (GO:0051234);; Biological Process: response to other organism (GO:0051707);; "	--	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog GN=CHLREDRAFT_130093 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=3 SV=1	Uncharacterized protein GN=Si017346m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: WD repeat-containing protein 86-like [Setaria italica]
comp204443_c0	2.13E-05	-2.512512348	down	--	--	"Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: lipid biosynthetic process (GO:0008610);; Biological Process: methylation (GO:0032259);; Cellular Component: cell part (GO:0044464);; "	--	Formin-like protein 16 (Precursor) GN=OsJ_008039 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si030388m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772217 [Setaria italica]
comp218338_c0	2.13E-05	-2.517116588	down	[CHR]	--	"Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Biological Process: lipid metabolic process (GO:0006629);; Biological Process: response to stress (GO:0006950);; Biological Process: organelle organization (GO:0006996);; Biological Process: cell communication (GO:0007154);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: photorespiration (GO:0009853);; Biological Process: oxidative photosynthetic carbon pathway (GO:0009854);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: gene expression (GO:0010467);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: membrane (GO:0016020);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: hydroxypyruvate reductase activity (GO:0016618);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Molecular Function: glyoxylate reductase (NADP) activity (GO:0030267);; Biological Process: cellular component biogenesis (GO:0044085);; Biological Process: cellular protein metabolic process (GO:0044267);; Molecular Function: hydroxyphenylpyruvate reductase activity (GO:0047995);; Biological Process: regulation of cellular process (GO:0050794);; Molecular Function: NAD binding (GO:0051287);; Biological Process: cellular response to stimulus (GO:0051716);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	Glyoxylate/hydroxypyruvate reductase HPR3 GN=HPR3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si009857m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Setaria italica]
comp130135_c0	5.52E-07	2.7863	up	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; "	--	--	Putative uncharacterized protein Sb03g040490 GN=Sb03g040490 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g040490 [Sorghum bicolor] 
comp168512_c0	0.001357169	2.085736379	up	--	--	"Molecular Function: iron ion binding (GO:0005506);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	--	--	Putative uncharacterized protein Sb01g038520 GN=Sb01g038520 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g038520 [Sorghum bicolor] 
comp226326_c0	0.001592081	-2.058746081	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Cellular Component: cell part (GO:0044464);; "	--	Early nodulin-20 (Precursor) GN=ENOD20 OS=Medicago truncatula (Barrel medic) PE=3 SV=1	Uncharacterized protein GN=Si035478m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101754447 [Setaria italica]
comp130430_c0	0.00308756	1.908626323	up	--	--	--	--	--	--	--
comp233990_c0	0.008817276	-1.782634593	down	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: defense response (GO:0006952);; Cellular Component: cell part (GO:0044464);; "	--	Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Putative uncharacterized protein Sb05g026180 GN=Sb05g026180 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: disease resistance protein RPM1-like isoform X4 [Setaria italica]
comp215386_c0	0.001867381	2.091465546	up	--	--	--	--	--	--	--
comp223670_c1	4.39E-05	-3.938503927	down	--	--	--	--	--	Uncharacterized protein GN=Si033932m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g038070 [Sorghum bicolor] 
comp191062_c0	2.78E-15	5.972603433	up	--	--	--	--	Leucine-rich repeat extensin-like protein 5 (Precursor) GN=LRX5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein (Fragment) GN=VOLCADRAFT_63308 OS=Volvox carteri (Green alga) PE=4 SV=1	hypothetical protein VOLCADRAFT_63308 [Volvox carteri f. nagariensis] 
comp198136_c0	0.000456526	-2.165136546	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: tissue development (GO:0009888);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Biological Process: cell growth (GO:0016049);; Biological Process: root development (GO:0048364);; Biological Process: cell development (GO:0048468);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Cellular Component: cell periphery (GO:0071944);; "	--	Lysine-rich arabinogalactan protein 19 (Precursor) GN=AGP19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100275537 precursor [Zea mays] 
comp208823_c0	8.93E-06	2.675267092	up	[R]	General function prediction only 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; "	--	--	Putative uncharacterized protein Sb01g019830 GN=Sb01g019830 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein ZEAMMB73_003585 [Zea mays]
comp206811_c1	0.000133831	2.191361192	up	--	--	"Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Blue copper protein (Precursor) GN=F5O24.120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=OB08G12650 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein OsJ_25979 [Oryza sativa Japonica Group]
comp152116_c0	0	-7.251814065	down	--	--	--	--	--	Uncharacterized protein GN=PYU1_G010152 OS=Pythium ultimum PE=4 SV=1	--
comp186134_c0	1.94E-14	5.541295847	up	--	--	--	--	--	--	--
comp210352_c2	0.002682093	-2.890216651	down	--	--	--	--	--	--	--
comp204277_c0	0.007127685	-2.601234565	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603);; "	--	F-box protein At3g58530 GN=At3g58530 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein GN=SELMODRAFT_420841 OS=Selaginella moellendorffii (Spikemoss) PE=4 SV=1	hypothetical protein SELMODRAFT_420841 [Selaginella moellendorffii] 
comp231079_c2	3.07E-06	-2.888001369	down	--	--	"Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: lateral root development (GO:0048527);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to hypoxia (GO:0071456);; "	--	Peroxidase 1 (Precursor) GN=OJ1057_B02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb09g024580 GN=Sb09g024580 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_09g024580 [Sorghum bicolor] 
comp156215_c0	0.003512738	-2.461570444	down	--	--	--	--	Probable calcium-binding protein CML49 GN=CML49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_979189 OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp290104_c0	2.67E-13	6.071856968	up	--	--	--	--	--	Putative uncharacterized protein OS=Picea sitchensis (Sitka spruce) PE=4 SV=1	unknown [Picea sitchensis]
comp197591_c0	2.18E-05	3.667060246	up	--	--	--	--	--	--	--
comp232283_c0	0.000230798	4.021633515	up	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; "	K02218|9e-76|zma:100192545|hypothetical protein LOC100192545	Casein kinase I isoform delta-like GN=At4g26100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	casein kinase I [Setosphaeria turcica]
comp235427_c0	0.005269201	2.031810487	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	Putative syntaxin-24 GN=SYP24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=Si004426m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative syntaxin-24-like [Setaria italica]
comp221298_c0	0.007161356	-2.498763918	down	--	--	--	--	--	--	--
comp217707_c0	4.22E-06	2.528603759	up	--	--	"Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Ethylene-responsive transcription factor ERF113 GN=ERF113 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative AP2/EREBP transcription factor superfamily protein GN=ZEAMMB73_959922 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor ERF110-like [Setaria italica]
comp222147_c0	0.000999364	1.987890336	up	--	--	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=OB07G31180 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein VOLCADRAFT_101814 [Volvox carteri f. nagariensis] 
comp221287_c0	0.004889801	2.261387744	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to heat (GO:0009408);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Cellular Component: plastid (GO:0009536);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: effector dependent induction by symbiont of host immune response (GO:0080185);; Molecular Function: salicylic acid binding (GO:1901149);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; Biological Process: regulation of salicylic acid mediated signaling pathway (GO:2000031);; "	--	Regulatory protein NPR3 GN=NPR3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein ZEAMMB73_089872 [Zea mays]
comp171325_c0	0.003911968	-2.594349082	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: membrane (GO:0016020);; "	--	--	Os01g0386600 protein GN=Os01g0386600 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os01g0386600 [Oryza sativa Japonica Group] 
comp172622_c0	0.001665314	2.557860405	up	--	--	--	--	--	--	--
comp222089_c1	8.98E-05	-2.459023545	down	--	--	"Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; "	--	Homeobox-leucine zipper protein HOX21 GN=HOX21 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si036519m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: homeobox-leucine zipper protein HOX21-like [Setaria italica]
comp166494_c0	9.67E-05	2.246456856	up	[E]	Amino acid transport and metabolism 	"Molecular Function: glutamate-ammonia ligase activity (GO:0004356);; Molecular Function: glutathione synthase activity (GO:0004363);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glycolysis (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: glutamine biosynthetic process (GO:0006542);; Biological Process: glutathione biosynthetic process (GO:0006750);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: aging (GO:0007568);; Biological Process: nitrogen fixation (GO:0009399);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: ammonia assimilation cycle (GO:0019676);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: nitrate assimilation (GO:0042128);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; "	K01915|0.0|osa:4337272|Os04g0659100	Glutamine synthetase, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Glutamine synthetase GN=OB04G35160 OS=Oryza brachyantha PE=3 SV=1	PREDICTED: glutamine synthetase, chloroplastic-like [Setaria italica]
comp231687_c2	5.96E-06	2.50954593	up	--	--	"Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: nucleus (GO:0005634);; Biological Process: organelle localization (GO:0051640);; "	--	Probable calcium-binding protein CML50 GN=CML50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si014345m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable calcium-binding protein CML50-like [Setaria italica]
comp230525_c0	3.80E-05	2.465686784	up	--	--	"Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: translational initiation (GO:0006413);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: nitrate transmembrane transporter activity (GO:0015112);; Biological Process: nitrate transport (GO:0015706);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: innate immune response (GO:0045087);; Biological Process: intracellular transport (GO:0046907);; "	--	High-affinity nitrate transporter 3.1 (Precursor) GN=At5g50200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016924m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: WAS/WASL-interacting protein family member 1-like [Setaria italica]
comp133262_c0	0.000481182	-2.812448587	down	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: response to red light (GO:0010114);; Biological Process: heat acclimation (GO:0010286);; Cellular Component: membrane (GO:0016020);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: ion binding (GO:0043167);; Biological Process: gibberellin catabolic process (GO:0045487);; Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634);; Molecular Function: C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Gibberellin 2-beta-dioxygenase 6 GN=GA2OX6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Gibberellin 2-beta-dioxygenase 2 GN=F775_11577 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	Gibberellin 2-beta-dioxygenase 2 [Aegilops tauschii]
comp220615_c0	1.16E-10	5.566446145	up	[L]	Replication, recombination and repair 	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: cellular component organization (GO:0016043);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: response to stimulus (GO:0050896);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Plus agglutinin GN=SAG1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=4 SV=1	plus agglutinin [Chlamydomonas reinhardtii]
comp206422_c0	0.008719251	-1.877163359	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: anther development (GO:0048653);; "	--	Uncharacterized protein At3g28850 GN=At3g28850 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101764798 [Setaria italica]
comp223639_c0	0.004682794	-1.884577385	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: copper ion binding (GO:0005507);; Biological Process: iron ion transport (GO:0006826);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: lignin catabolic process (GO:0046274);; Biological Process: response to copper ion (GO:0046688);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Laccase-23 (Precursor) GN=LAC23 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si027545m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: laccase-23-like [Setaria italica]
comp162633_c0	0.007180773	-1.871905271	down	[G]	Carbohydrate transport and metabolism 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: alpha-L-fucosidase activity (GO:0004560);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: cell adhesion (GO:0007155);; Biological Process: cellular process (GO:0009987);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Alpha-L-fucosidase 1 (Precursor) GN=FUC1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si029623m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative alpha-L-fucosidase 1-like [Setaria italica]
comp235053_c2	0.000419122	-2.148211885	down	[S]	Function unknown 	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: nucleotide binding (GO:0000166);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: immune response (GO:0006955);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Cellular Component: chloroplast (GO:0009507);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development (GO:0009790);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Biological Process: phosphorylation (GO:0016310);; Biological Process: cell differentiation (GO:0030154);; Molecular Function: signaling receptor activity (GO:0038023);; Biological Process: anther development (GO:0048653);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization (GO:0071555);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) GN=At4g26540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g027710 GN=Sb02g027710 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g027710 [Sorghum bicolor] 
comp268453_c0	3.28E-10	4.761667724	up	[S]	Function unknown 	--	--	--	Predicted protein GN=POPTRDRAFT_677245 OS=Populus trichocarpa (Western balsam poplar) PE=4 SV=1	--
comp208087_c0	8.91E-05	-2.959527771	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: Golgi organization (GO:0007030);; Cellular Component: plastid (GO:0009536);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: response to salt stress (GO:0009651);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Cellular Component: protein complex (GO:0043234);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: regulation of long-day photoperiodism, flowering (GO:0048586);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: transmembrane receptor protein serine/threonine kinase binding (GO:0070696);; "	--	U-box domain-containing protein 4 GN=PUB4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Spotted leaf protein 11 OS=Zea mays (Maize) PE=2 SV=1	spotted leaf protein 11 [Zea mays] 
comp126789_c0	0.000354788	3.961535104	up	--	--	--	--	--	--	hydrophobin 3 precursor [Fusarium culmorum]
comp218139_c0	0.001566755	1.928117418	up	[R]	General function prediction only 	"Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si032240m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762929 [Setaria italica]
comp228009_c1	5.54E-06	-3.224312696	down	[RTKL]	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Biological Process: pollen development (GO:0009555);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: defense response to fungus (GO:0050832);; "	--	L-type lectin-domain containing receptor kinase VIII.2 (Precursor) GN=LECRK82 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si021314m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: L-type lectin-domain containing receptor kinase VIII.1-like [Setaria italica]
comp200860_c0	3.79E-05	-2.951787873	down	[I]	Lipid transport and metabolism 	"Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	CASP-like protein Sb05g025790 GN=Sb05g025790 OS=Sorghum bicolor (Sorghum) PE=2 SV=1	Putative uncharacterized protein GN=OsI_04929 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1	hypothetical protein SORBIDRAFT_05g025790 [Sorghum bicolor] 
comp178789_c0	0.006166417	1.856106261	up	[N]	Cell motility 	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: transport (GO:0006810);; Biological Process: protein transport (GO:0015031);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	K12191|1e-146|zma:100284688|charged multivesicular body protein 2a	Vacuolar protein sorting-associated protein 2 homolog 1 GN=T12H3.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=BRADI4G09340 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like [Brachypodium distachyon]
comp155443_c0	0.00024415	2.391982823	up	--	--	--	--	--	--	--
comp287568_c0	0.007017064	2.717984004	up	--	--	--	--	--	--	--
comp201354_c0	0.000797157	3.209973005	up	--	--	--	--	--	Putative uncharacterized protein Sb07g022330 GN=Sb07g022330 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	Chloroplast, high sulfur B2-like protein [Theobroma cacao]
comp224275_c0	0.006042458	2.230696834	up	[F]	Nucleotide transport and metabolism 	"Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: nucleoside diphosphate phosphorylation (GO:0006165);; Biological Process: GTP biosynthetic process (GO:0006183);; Biological Process: UTP biosynthetic process (GO:0006228);; Biological Process: CTP biosynthetic process (GO:0006241);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: thylakoid (GO:0009579);; Biological Process: photorespiration (GO:0009853);; Biological Process: red or far-red light signaling pathway (GO:0010017);; Biological Process: second-messenger-mediated signaling (GO:0019932);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: cobalt ion binding (GO:0050897);; "	K00940|1e-62|ppp:PHYPADRAFT_125853|NDPK2a	Nucleoside diphosphate kinase 2, chloroplastic (Precursor) GN=NDPK2 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1	Nucleoside diphosphate kinase OS=Lotus japonicus (Lotus corniculatus var. japonicus) PE=2 SV=1	unknown [Lotus japonicus]
comp226708_c1	2.94E-07	4.397563457	up	--	--	--	--	--	--	hog1 protein, partial [Corynespora cassiicola] 
comp179300_c0	0.005399416	1.880600676	up	--	--	"Molecular Function: protein binding (GO:0005515);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: innate immune response (GO:0045087);; Biological Process: response to other organism (GO:0051707);; "	K13464|6e-75|osa:4347164|Os09g0439200	Protein TIFY 10A GN=T29M8.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si031037m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein TIFY 10A-like [Setaria italica]
comp195877_c0	0	4.76541885	up	--	--	"Biological Process: reproduction (GO:0000003);; Molecular Function: binding (GO:0005488);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Cellular Component: plastid (GO:0009536);; Biological Process: response to bacterium (GO:0009617);; Cellular Component: membrane (GO:0016020);; Biological Process: regulation of defense response (GO:0031347);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: innate immune response (GO:0045087);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: negative regulation of cellular process (GO:0048523);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	Transcription factor TGA2 GN=MOJ9.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein GN=OsI_00493 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	hypothetical protein OsI_00493 [Oryza sativa Indica Group]
comp224359_c0	2.21E-05	-2.638822873	down	[L]	Replication, recombination and repair 	--	K01246|3e-66|sbi:SORBI_02g024850|hypothetical protein	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101755070 [Setaria italica]
comp223533_c0	0.001143447	-2.058042449	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: RNA processing (GO:0006396);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: osmosensory signaling pathway (GO:0007231);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to nitrate (GO:0010167);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Molecular Function: NAD(P)H oxidase activity (GO:0016174);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor (GO:0050664);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: oxidation-reduction process (GO:0055114);; "	K13447|1e-142|sbi:SORBI_03g033800|hypothetical protein	Respiratory burst oxidase homolog protein A GN=RBOHA OS=Solanum tuberosum (Potato) PE=1 SV=1	Uncharacterized protein GN=Si000193m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: respiratory burst oxidase homolog protein A-like [Setaria italica]
comp224456_c0	1.07E-06	2.675672458	up	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: inorganic anion transport (GO:0015698);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: negative regulation of biological process (GO:0048519);; "	--	Probable WRKY transcription factor 38 GN=WRKY38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	WRKY-type transcription factor (Fragment) OS=Zea mays subsp. mays (maize) PE=2 SV=1	WRKY DNA binding domain containing protein [Zea mays] 
comp213406_c0	4.87E-06	2.65309222	up	--	--	"Biological Process: response to water stimulus (GO:0009415);; Cellular Component: chloroplast (GO:0009507);; Biological Process: negative regulation of hydrogen peroxide biosynthetic process (GO:0010730);; Cellular Component: ribonucleoprotein complex (GO:0030529);; "	--	Probable mediator of RNA polymerase II transcription subunit 19b GN=F7K24.230 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Dehydrin 13 OS=Zea mays (Maize) PE=4 SV=1	dehydrin 13 [Zea mays]
comp227421_c0	0.000176995	-2.944099713	down	--	--	--	--	EID1-like F-box protein 3 GN=EDL3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=OsJ_03781 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein OsJ_03781 [Oryza sativa Japonica Group]
comp194735_c0	8.36E-06	4.035068431	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: membrane (GO:0016020);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: root development (GO:0048364);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Predicted protein (Fragment) GN=POPTRDRAFT_658978 OS=Populus trichocarpa (Western balsam poplar) PE=4 SV=1	predicted protein [Populus trichocarpa] 
comp223755_c0	0.001412329	2.121027954	up	--	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Uclacyanin-2 (Precursor) GN=At2g44790 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g012910 GN=Sb02g012910 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g012910 [Sorghum bicolor] 
comp223888_c1	6.99E-06	-2.851384888	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: regulation of cellular metabolic process (GO:0031323);; "	--	Nodulation-signaling pathway 2 protein GN=NSP2 OS=Medicago truncatula (Barrel medic) PE=1 SV=1	Uncharacterized protein GN=Si040022m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: nodulation-signaling pathway 2 protein-like [Setaria italica]
comp223890_c0	0.000107601	2.284855727	up	--	--	"Molecular Function: nucleoside transmembrane transporter activity (GO:0005337);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transport (GO:0006810);; Biological Process: purine nucleobase transport (GO:0006863);; Biological Process: pyrimidine nucleoside transport (GO:0015864);; Cellular Component: integral to membrane (GO:0016021);; "	--	Equilibrative nucleotide transporter 3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si029954m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: equilibrative nucleotide transporter 3-like isoform X1 [Setaria italica] 
comp149111_c1	0.000202985	3.393366519	up	--	--	--	--	--	--	--
comp129988_c0	0.000526669	2.089126584	up	--	--	--	--	--	Uncharacterized protein GN=OB10G21820 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein ZEAMMB73_284819 [Zea mays]
comp230143_c2	0.002688362	2.435305926	up	[M]	Cell wall/membrane/envelope biogenesis 	--	--	--	Putative uncharacterized protein GN=AURANDRAFT_70520 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70520 [Aureococcus anophagefferens]
comp212482_c2	5.48E-07	4.068599213	up	--	--	--	--	--	--	--
comp216182_c0	0.007650131	-1.802479647	down	[U]	Intracellular trafficking, secretion, and vesicular transport 	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular component organization (GO:0016043);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Arabinogalactan protein 1 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100274631 precursor [Zea mays] 
comp131091_c0	8.01E-08	2.989388275	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Phylloplanin (Precursor) OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1	Putative uncharacterized protein Sb01g035810 GN=Sb01g035810 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g035810 [Sorghum bicolor] 
comp226093_c1	0.001275801	-2.608921081	down	[V]	Defense mechanisms 	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: drug transmembrane transport (GO:0006855);; Biological Process: fatty acid catabolic process (GO:0009062);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Biological Process: cadmium ion transport (GO:0015691);; Cellular Component: membrane (GO:0016020);; Biological Process: sequestering of metal ion (GO:0051238);; "	--	MATE efflux family protein 7 GN=F3L12.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100279305 [Zea mays] 
comp226342_c0	2.33E-10	-3.542663233	down	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: iron ion transport (GO:0006826);; Biological Process: pollen development (GO:0009555);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: phloem transport (GO:0010233);; Molecular Function: nicotianamine synthase activity (GO:0030410);; Biological Process: nicotianamine biosynthetic process (GO:0030418);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to nitric oxide (GO:0071732);; "	K05953|1e-175|zma:100191831|hypothetical protein LOC100191831	Nicotianamine synthase 1 GN=NAS1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_199822 OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp230501_c0	1.22E-08	3.047565386	up	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: binding (GO:0005488);; Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: cation transport (GO:0006812);; Biological Process: defense response (GO:0006952);; Molecular Function: cation transmembrane transporter activity (GO:0008324);; Biological Process: response to organic substance (GO:0010033);; Molecular Function: ion transmembrane transporter activity (GO:0015075);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances (GO:0016820);; Cellular Component: organelle membrane (GO:0031090);; Molecular Function: ion binding (GO:0043167);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: response to other organism (GO:0051707);; "	K01539|0.0|olu:OSTLU_48492|P-ATPase family transporter: sodium/potassium ion	Cation-transporting ATPase CA1 GN=CA1 OS=Dunaliella bioculata (Green alga) PE=2 SV=1	P-type ATPase GN=kpa1 OS=Pythium aphanidermatum PE=3 SV=1	P-type ATPase [Pythium aphanidermatum]
comp219738_c0	0.007127685	-2.601234565	down	--	--	--	--	Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Uncharacterized protein GN=Si000390m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: disease resistance protein RPM1-like isoform X4 [Setaria italica]
comp206943_c0	0.005774853	-2.207827095	down	--	--	"Biological Process: amino acid transport (GO:0006865);; Biological Process: defense response (GO:0006952);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to chitin (GO:0010200);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	E3 ubiquitin-protein ligase ATL15 (Precursor) GN=ATL15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb10g020970 GN=Sb10g020970 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g020970 [Sorghum bicolor] 
comp226582_c0	0.005332466	-1.835602836	down	--	--	--	--	--	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_70670 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70670, partial [Aureococcus anophagefferens]
comp230818_c0	0.00092614	-2.056642758	down	--	--	"Molecular Function: O-acyltransferase activity (GO:0008374);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; "	--	"3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase GN=TAX10 OS=Taxus canadensis (Canadian yew) PE=1 SV=1"	Uncharacterized protein GN=Si006405m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: 10-deacetylbaccatin III 10-O-acetyltransferase-like [Setaria italica]
comp129715_c0	0.005230756	1.78410481	up	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si039842m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101753228 [Setaria italica]
comp204531_c0	0.000956942	2.165390983	up	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: response to fungus (GO:0009620);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: organ development (GO:0048513);; Cellular Component: cell periphery (GO:0071944);; Biological Process: carbohydrate derivative biosynthetic process (GO:1901137);; "	--	Wall-associated receptor kinase 2 (Precursor) GN=WAK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g022080 GN=Sb03g022080 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g022080 [Sorghum bicolor] 
comp215772_c0	3.68E-05	2.399230275	up	--	--	"Molecular Function: binding (GO:0005488);; Molecular Function: hydrolase activity (GO:0016787);; "	K13464|4e-38|sbi:SORBI_01g023330|hypothetical protein	Protein TIFY 3A GN=T18D12.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g023330 GN=Sb01g023330 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g023330 [Sorghum bicolor] 
comp232797_c0	0.000991103	-2.049636205	down	--	--	"Molecular Function: extracellular matrix structural constituent (GO:0005201);; Cellular Component: extracellular region (GO:0005576);; Biological Process: glucose catabolic process (GO:0006007);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: extracellular matrix organization (GO:0030198);; Cellular Component: intracellular organelle (GO:0043229);; Cellular Component: anchored to plasma membrane (GO:0046658);; "	--	Auxin-induced in root cultures protein 12 (Precursor) GN=AIR12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Putative uncharacterized protein Sb07g026630 GN=Sb07g026630 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g026630 [Sorghum bicolor] 
comp204112_c0	2.66E-07	-4.546421856	down	--	--	"Molecular Function: protein binding (GO:0005515);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plastid (GO:0009536);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: membrane (GO:0016020);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: cell periphery (GO:0071944);; "	--	Protein PLASTID MOVEMENT IMPAIRED 2 GN=F4N21.22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g027560 GN=Sb09g027560 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g027560 [Sorghum bicolor] 
comp164920_c0	0.008757985	-1.962508223	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: glutathione metabolic process (GO:0006749);; Biological Process: response to stress (GO:0006950);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to herbicide (GO:0009635);; Biological Process: response to salt stress (GO:0009651);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: cellular process (GO:0009987);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: transferase activity (GO:0016740);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Molecular Function: enzyme binding (GO:0019899);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Molecular Function: glutathione binding (GO:0043295);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: proteasome core complex assembly (GO:0080129);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of response to red or far red light (GO:2000030);; "	--	Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si040658m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable glutathione S-transferase GSTU1-like [Setaria italica]
comp127227_c0	0.000586106	-4.051922527	down	--	--	"Molecular Function: hydrolase activity (GO:0016787);; "	--	Proline-rich receptor-like protein kinase PERK8 GN=PERK8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb07g023145 (Fragment) GN=Sb07g023145 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g023145 [Sorghum bicolor] 
comp228383_c0	6.82E-09	3.069544528	up	--	--	"Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: lysozyme activity (GO:0003796);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: extracellular space (GO:0005615);; Cellular Component: vacuole (GO:0005773);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to light intensity (GO:0009642);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: defense response to fungus (GO:0050832);; "	--	Lysozyme (Precursor) OS=Hevea brasiliensis (Para rubber tree) PE=1 SV=2	Uncharacterized protein GN=Si002396m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: hevamine-A-like [Setaria italica]
comp217551_c1	0.007623551	-2.165264401	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to bacterium (GO:0009617);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: detection of stimulus (GO:0051606);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: regulation of primary metabolic process (GO:0080090);; "	--	Probable receptor-like protein kinase At5g20050 (Precursor) GN=At5g20050 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si006404m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable receptor-like protein kinase At5g20050-like [Setaria italica]
comp235133_c0	8.64E-05	2.289923684	up	[S]	Function unknown 	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: peptide receptor activity (GO:0001653);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: guanylate cyclase activity (GO:0004383);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ion transport (GO:0006811);; Biological Process: cell cycle (GO:0007049);; Biological Process: pattern specification process (GO:0007389);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to chitin (GO:0010200);; Biological Process: seed maturation (GO:0010431);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transmembrane receptor protein kinase activity (GO:0019199);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: peptide binding (GO:0042277);; Biological Process: defense response to bacterium (GO:0042742);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: innate immune response (GO:0045087);; Biological Process: developmental growth (GO:0048589);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: cell wall organization (GO:0071555);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Receptor-like protein kinase (Precursor) GN=INRPK1 OS=Ipomoea nil (Japanese morning glory) PE=2 SV=2	Putative uncharacterized protein Sb07g021950 GN=Sb07g021950 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g021950 [Sorghum bicolor] 
comp164348_c0	0.000151298	4.079328203	up	--	--	--	--	--	--	--
comp232393_c0	0.009162318	1.764279368	up	--	--	--	--	--	--	--
comp211669_c0	3.39E-06	2.566439515	up	--	--	"Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);; Molecular Function: alpha-amylase inhibitor activity (GO:0015066);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Alpha-amylase/subtilisin inhibitor (Precursor) GN=OSJNBa0038O10.14 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2	Uncharacterized protein GN=OB04G26380 OS=Oryza brachyantha PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_778280 [Zea mays]
comp154446_c1	0.000594085	3.496355273	up	--	--	--	--	--	--	--
comp200523_c0	0.004064701	-2.506493239	down	--	--	--	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100277632 [Zea mays] 
comp228318_c0	0.003441685	1.834091093	up	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ion transport (GO:0006811);; Biological Process: defense response (GO:0006952);; Biological Process: cell communication (GO:0007154);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to ozone (GO:0010193);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to stress (GO:0033554);; Molecular Function: ion binding (GO:0043167);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: nitrogen compound transport (GO:0071705);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (Precursor) GN=At1g53440 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si016192m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440-like isoform X1 [Setaria italica]
comp199485_c0	7.53E-05	2.298048547	up	[R]	General function prediction only 	"Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: cell part (GO:0044464);; "	--	C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Integral membrane single C2 domain protein GN=NTMC2T6.2 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	integral membrane single C2 domain protein [Sorghum bicolor] 
comp129968_c0	1.26E-05	2.5595865	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: heat acclimation (GO:0010286);; Cellular Component: cell periphery (GO:0071944);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=ZEAMMB73_959410 OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp132409_c0	0.001805939	-2.09023462	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein binding (GO:0005515);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Cellular Component: chloroplast (GO:0009507);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cellular response to light stimulus (GO:0071482);; "	--	Sigma factor binding protein 1, chloroplastic (Precursor) GN=SIB1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g037575 GN=Sb03g037575 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775919 [Setaria italica]
comp224788_c0	8.46E-06	-2.73494677	down	--	--	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Expressed protein (Fragment) GN=AURANDRAFT_72069 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	PREDICTED: proline-rich receptor-like protein kinase PERK13-like [Fragaria vesca subsp. vesca]
comp219224_c2	1.00E-05	2.933066464	up	--	--	"Molecular Function: inorganic diphosphatase activity (GO:0004427);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: auxin polar transport (GO:0009926);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: endosome membrane (GO:0010008);; Biological Process: establishment or maintenance of transmembrane electrochemical gradient (GO:0010248);; Biological Process: proton transport (GO:0015992);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: leaf development (GO:0048366);; "	K01507|7e-27|sbi:SORBI_04g036230|hypothetical protein	Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum vulgare (Barley) PE=2 SV=2	Uncharacterized protein GN=Si016404m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Setaria italica]
comp225608_c0	2.59E-05	2.408592391	up	[R]	General function prediction only 	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: epidermal cell fate specification (GO:0009957);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: trichome differentiation (GO:0010026);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: entrainment of circadian clock by photoperiod (GO:0043153);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: photoperiodism, flowering (GO:0048573);; Cellular Component: cell periphery (GO:0071944);; "	--	Protein TRANSPARENT TESTA GLABRA 1 GN=TTG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Tan1 OS=Sorghum bicolor (Sorghum) PE=2 SV=1	Tan1 [Sorghum bicolor]
comp213326_c1	0.004527361	-1.859083895	down	--	--	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Biological Process: suberin biosynthetic process (GO:0010345);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; "	--	Cytochrome P450 86B1 GN=CYP86B1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si005145m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 86B1-like [Setaria italica]
comp132537_c0	0.000217766	2.888903058	up	--	--	--	--	--	Uncharacterized protein OS=Vicia faba (Broad bean) PE=4 SV=1	hypothetical protein (mitochondrion) [Vicia faba]
comp226060_c0	0.001120599	2.029647293	up	--	--	--	--	--	Uncharacterized protein GN=OB08G17530 OS=Oryza brachyantha PE=4 SV=1	Os04g0128700 [Oryza sativa Japonica Group] 
comp223848_c1	7.02E-08	2.918657211	up	--	--	--	--	--	Putative uncharacterized protein Sb01g034210 GN=Sb01g034210 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g034210 [Sorghum bicolor] 
comp220036_c0	0.005004516	-2.352074223	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: ubiquitin thiolesterase activity (GO:0004221);; Molecular Function: ubiquitin-specific protease activity (GO:0004843);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: gravitropism (GO:0009630);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	K11838|8e-10|sbi:SORBI_03g035900|hypothetical protein	Ubiquitin carboxyl-terminal hydrolase 13 GN=UBP13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g035900 GN=Sb03g035900 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g035900 [Sorghum bicolor] 
comp222381_c0	0.008885053	-2.696517016	down	--	--	"Molecular Function: 1-phosphatidylinositol binding (GO:0005545);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: clathrin coat (GO:0030118);; Molecular Function: clathrin binding (GO:0030276);; Biological Process: clathrin coat assembly (GO:0048268);; "	--	Putative clathrin assembly protein At5g57200 GN=At5g57200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=Si008340m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	predicted protein [Fibroporia radiculosa]
comp198226_c0	3.97E-05	2.342455958	up	--	--	--	--	--	Uncharacterized protein GN=Si020315m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101761125 [Setaria italica]
comp224620_c0	0.006831474	-2.042868951	down	--	--	"Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: lipase activity (GO:0016298);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	GDSL esterase/lipase At1g28600 (Precursor) GN=At1g28600 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si030074m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: GDSL esterase/lipase At1g28600-like [Setaria italica]
comp218207_c0	2.08E-06	2.586183707	up	--	--	"Cellular Component: membrane (GO:0016020);; "	--	Early nodulin-93 OS=Glycine max (Soybean) PE=2 SV=1	Putative uncharacterized protein Sb10g002880 GN=Sb10g002880 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g002880 [Sorghum bicolor] 
comp243145_c0	0.00156823	1.932673834	up	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to fungus (GO:0009620);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: polysaccharide binding (GO:0030247);; "	--	Wall-associated receptor kinase-like 1 (Precursor) GN=WAKL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein (Fragment) GN=PRUPE_ppa018361mg OS=Prunus persica (Peach) PE=4 SV=1	hypothetical protein PRUPE_ppa018361mg, partial [Prunus persica]
comp219290_c2	0.003140511	1.846285557	up	--	--	--	--	--	Uncharacterized protein GN=Si002401m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 38-like [Setaria italica]
comp235489_c0	1.73E-08	3.024036201	up	--	--	--	--	--	Putative uncharacterized protein GN=OsI_12996 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	hypothetical protein OsI_12996 [Oryza sativa Indica Group]
comp227096_c1	1.42E-06	3.253832721	up	--	--	"Molecular Function: guanylate cyclase activity (GO:0004383);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cGMP biosynthetic process (GO:0006182);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: oligosaccharide metabolic process (GO:0009311);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: cellular water homeostasis (GO:0009992);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to chitin (GO:0010200);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: ovule development (GO:0048481);; Biological Process: lateral root development (GO:0048527);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: defense response to fungus (GO:0050832);; "	--	Wall-associated receptor kinase 5 (Precursor) GN=WAK5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g036600 GN=Sb04g036600 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_04g036600 [Sorghum bicolor] 
comp229055_c1	0.007395956	-1.812759887	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: regulation of cellular amino acid metabolic process (GO:0006521);; Biological Process: cellular response to starvation (GO:0009267);; Cellular Component: plastid (GO:0009536);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anther dehiscence (GO:0009901);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Molecular Function: protein heterodimerization activity (GO:0046982);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: response to stimulus (GO:0050896);; Biological Process: cellular response to glucose stimulus (GO:0071333);; "	--	Ocs element-binding factor 1 GN=OBF1 OS=Zea mays (Maize) PE=2 SV=2	Putative uncharacterized protein Sb03g024260 GN=Sb03g024260 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g024260 [Sorghum bicolor] 
comp220783_c0	2.06E-06	2.604614068	up	--	--	"Biological Process: immune system process (GO:0002376);; Biological Process: defense response (GO:0006952);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to organic substance (GO:0010033);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; "	--	Cysteine-rich receptor-like protein kinase 11 (Precursor) GN=F21P8.80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si031252m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative cysteine-rich receptor-like protein kinase 20-like [Setaria italica]
comp209253_c0	0.000668953	2.022305879	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: phototropism (GO:0009638);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: response to cadmium ion (GO:0046686);; "	--	Chaperone protein dnaJ 20, chloroplastic (Precursor) GN=F18A5.220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb02g023200 GN=Sb02g023200 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g023200 [Sorghum bicolor] 
comp223404_c0	0.000884537	-2.109695543	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: signal transduction (GO:0007165);; Biological Process: metabolic process (GO:0008152);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to inorganic substance (GO:0010035);; Molecular Function: abscisic acid glucosyltransferase activity (GO:0010294);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Biological Process: cellular response to hormone stimulus (GO:0032870);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: benzene-containing compound metabolic process (GO:0042537);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: cellular response to abiotic stimulus (GO:0071214);; "	--	Cyanidin 3-O-rutinoside 5-O-glucosyltransferase GN=5GT OS=Iris hollandica (Dutch iris) PE=1 SV=1	Uncharacterized protein GN=Si004704m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g003760 [Sorghum bicolor] 
comp274861_c0	0.001081698	-2.632080123	down	--	--	"Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to chitin (GO:0010200);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: Golgi vesicle transport (GO:0048193);; "	--	Zinc finger CCCH domain-containing protein 28 GN=OJ000114_01.2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si010459m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: F-box protein At1g70590-like [Setaria italica]
comp217637_c0	0.000739897	2.215052568	up	--	--	--	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein precursor [Zea mays] 
comp155133_c0	0.001551938	-3.898823936	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Uncharacterized GPI-anchored protein At1g27950 (Precursor) GN=At1g27950 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g004130 GN=Sb02g004130 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g004130 [Sorghum bicolor] 
comp230693_c0	4.54E-07	2.819204053	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: steroid biosynthetic process (GO:0006694);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: flower development (GO:0009908);; Biological Process: response to red light (GO:0010114);; Biological Process: response to chitin (GO:0010200);; Molecular Function: (+)-abscisic acid 8'-hydroxylase activity (GO:0010295);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: cell differentiation (GO:0030154);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: external encapsulating structure organization (GO:0045229);; Biological Process: abscisic acid catabolic process (GO:0046345);; Biological Process: organ development (GO:0048513);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: release of seed from dormancy (GO:0048838);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; "	K09843|0.0|zma:100383693|hypothetical protein LOC100383693	"Abscisic acid 8'-hydroxylase 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1"	Uncharacterized protein GN=Si017109m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	"PREDICTED: abscisic acid 8'-hydroxylase 1-like [Setaria italica]"
comp225478_c0	0.002641429	1.990769939	up	[RTKL]	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: amino acid transport (GO:0006865);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: cellular process (GO:0009987);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to chitin (GO:0010200);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; "	--	Putative cysteine-rich receptor-like protein kinase 20 (Precursor) GN=CRK20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si024498m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Setaria italica]
comp220508_c0	0.001810697	2.038266837	up	[C]	Energy production and conversion 	"Molecular Function: protein binding (GO:0005515);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: ferredoxin metabolic process (GO:0006124);; Molecular Function: ferrous iron binding (GO:0008198);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: abscisic acid biosynthetic process (GO:0009688);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: photosynthetic electron transport chain (GO:0009767);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: response to far red light (GO:0010218);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: response to karrikin (GO:0080167);; "	K02639|4e-75|sbi:SORBI_07g000610|hypothetical protein	Ferredoxin-1, chloroplastic (Precursor) GN=FDX1 OS=Zea mays (Maize) PE=1 SV=1	Uncharacterized protein GN=Si014626m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ferredoxin-1, chloroplastic-like [Setaria italica]
comp232219_c0	0.001753025	1.987683553	up	[RTKL]	--	"Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: chromosome segregation (GO:0007059);; Biological Process: meiosis I (GO:0007127);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: response to cold (GO:0009409);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to salt stress (GO:0009651);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: posttranscriptional gene silencing by RNA (GO:0035194);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: symbiosis, encompassing mutualism through parasitism (GO:0044403);; Biological Process: xylan metabolic process (GO:0045491);; Biological Process: chromosome organization (GO:0051276);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: production of small RNA involved in gene silencing by RNA (GO:0070918);; "	--	Calmodulin-binding receptor-like cytoplasmic kinase 3 (Precursor) GN=CRCK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	cDNA clone:J013156I11, full insert sequence OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	unnamed protein product [Oryza sativa Japonica Group]
comp129987_c0	0.000183378	2.236614024	up	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to light intensity (GO:0009642);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: response to chitin (GO:0010200);; Biological Process: negative regulation of growth (GO:0045926);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: system development (GO:0048731);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	Zinc finger protein ZAT8 GN=ZAT8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si037672m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger protein ZAT12-like [Setaria italica]
comp234379_c1	0.002170693	1.900902994	up	--	--	"Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein (Fragment) GN=Si008577m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g012730 [Sorghum bicolor] 
comp196180_c0	0.001258957	2.030296031	up	--	--	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si038280m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762981 [Setaria italica]
comp208122_c0	0.009711061	1.708908544	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: defense response (GO:0006952);; Molecular Function: peptidase activity (GO:0008233);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: oxoacid metabolic process (GO:0043436);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: localization (GO:0051179);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Aspartic proteinase nepenthesin-1 (Precursor) GN=nep1 OS=Nepenthes gracilis (Slender pitcher plant) PE=1 SV=1	Os03g0318400 protein GN=Os03g0318400 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	PREDICTED: aspartic proteinase nepenthesin-1-like [Setaria italica]
comp198228_c0	0.001936222	-1.966892687	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; "	--	--	Uncharacterized protein GN=OB10G23210 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein OsI_34358 [Oryza sativa Indica Group]
comp132815_c0	0.000916542	1.987110001	up	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; "	--	AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si024576m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800-like [Setaria italica]
comp247053_c0	2.39E-06	-4.792825038	down	--	--	--	--	--	--	--
comp227187_c0	2.28E-08	3.478196014	up	[K]	Transcription 	"Cellular Component: plastid (GO:0009536);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	DNA-directed RNA polymerase subunit beta GN=rpoB OS=Rhodomonas salina (Cryptomonas salina) PE=3 SV=1	Two component transcriptional regulator GN=rpoB OS=Calliarthron tuberculosum PE=4 SV=1	DNA-directed RNA polymerase beta subunit [Paulinella chromatophora] 
comp173119_c0	0.000123406	-2.291632589	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to cold (GO:0009409);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: electron transport chain (GO:0022900);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: stamen development (GO:0048443);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; "	--	Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si003362m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: monothiol glutaredoxin-S2-like [Setaria italica]
comp216500_c0	0.006533747	-1.810003999	down	[GEPR]	--	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Biological Process: purine nucleobase transport (GO:0006863);; Molecular Function: sucrose:hydrogen symporter activity (GO:0008506);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: response to heat (GO:0009408);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: monosaccharide transmembrane transporter activity (GO:0015145);; Biological Process: nitrate transport (GO:0015706);; Biological Process: sucrose transport (GO:0015770);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: transmembrane transport (GO:0055085);; "	--	Sugar transport protein 5 GN=STP5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si009879m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: sugar transport protein 5-like isoform X2 [Setaria italica]
comp486426_c0	1.12E-08	5.148102985	up	--	--	"Molecular Function: monophenol monooxygenase activity (GO:0004503);; Biological Process: melanin biosynthetic process (GO:0042438);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Cellular Component: cell periphery (GO:0071944);; "	--	Extensin (Precursor) GN=HRGP OS=Zea mays (Maize) PE=2 SV=1	Similar to hedgehog protein GN=CYME_CMH001C OS=Cyanidioschyzon merolae strain 10D PE=4 SV=1	"RecName: Full=Tyrosinase; AltName: Full=Monophenol monooxygenase "
comp229757_c0	1.03E-06	-3.124615408	down	--	--	"Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: system development (GO:0048731);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Nodulation-signaling pathway 1 protein GN=NSP1 OS=Medicago truncatula (Barrel medic) PE=1 SV=1	Uncharacterized protein GN=Si040237m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g032800 [Sorghum bicolor] 
comp220259_c1	5.33E-05	-2.828712313	down	--	--	"Biological Process: cell wall macromolecule metabolic process (GO:0044036);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035463m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774840 [Setaria italica]
comp185038_c0	0.000136684	-3.063864798	down	--	--	"Biological Process: autophagy (GO:0006914);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: defense response to bacterium (GO:0042742);; "	--	Cysteine-rich repeat secretory protein 12 (Precursor) GN=CRRSP12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	cDNA clone:002-155-E10, full insert sequence GN=P0643A10.55 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os02g0734800 [Oryza sativa Japonica Group] 
comp223170_c0	0.003598494	1.887563521	up	--	--	"Biological Process: response to hypoxia (GO:0001666);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: trehalose biosynthetic process (GO:0005992);; Biological Process: proline biosynthetic process (GO:0006561);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to fungus (GO:0009620);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: camalexin biosynthetic process (GO:0010120);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: protein histidine kinase binding (GO:0043424);; Biological Process: innate immune response (GO:0045087);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: negative regulation of leaf senescence (GO:1900056);; "	--	Transcription factor JUNGBRUNNEN 1 GN=F23E6.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si006994m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: NAC transcription factor ONAC010-like [Setaria italica]
comp211650_c0	0.000113577	2.306904906	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: late endosome (GO:0005770);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cation transport (GO:0006812);; Molecular Function: cation transmembrane transporter activity (GO:0008324);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to manganese ion (GO:0010042);; Biological Process: response to UV-B (GO:0010224);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Molecular Function: manganese:hydrogen antiporter activity (GO:0010486);; Molecular Function: efflux transmembrane transporter activity (GO:0015562);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular manganese ion homeostasis (GO:0030026);; Biological Process: response to copper ion (GO:0046688);; Biological Process: transmembrane transport (GO:0055085);; "	--	Metal tolerance protein 7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: metal tolerance protein 7-like isoform X2 [Setaria italica]
comp299794_c0	5.55E-07	3.463505682	up	--	--	--	--	--	Defensin OS=Medicago truncatula (Barrel medic) PE=4 SV=1	Defensin [Medicago truncatula] 
comp221844_c0	0.004937756	-1.986735734	down	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: flower development (GO:0009908);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: histone modification (GO:0016570);; Biological Process: gene silencing by RNA (GO:0031047);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Biological Process: macromolecule methylation (GO:0043414);; Cellular Component: anchored to plasma membrane (GO:0046658);; "	--	Glucan endo-1,3-beta-glucosidase 7 (Precursor) GN=At4g34480 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb01g012380 GN=Sb01g012380 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g012380 [Sorghum bicolor] 
comp208908_c0	0.001341661	-2.995068047	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Biological Process: suberin biosynthetic process (GO:0010345);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: heterocycle biosynthetic process (GO:0018130);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Biological Process: hormone biosynthetic process (GO:0042446);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; Biological Process: cellular nitrogen compound biosynthetic process (GO:0044271);; Cellular Component: membrane part (GO:0044425);; Cellular Component: intracellular organelle part (GO:0044446);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: aromatase activity (GO:0070330);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; "	--	Cytochrome P450 704C1 GN=CYP704C1 OS=Pinus taeda (Loblolly pine) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp129473_c0	0.00130513	3.383184712	up	--	--	--	--	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp215769_c0	4.52E-12	3.631676748	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: protein targeting (GO:0006605);; Biological Process: response to stress (GO:0006950);; Biological Process: UV protection (GO:0009650);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cytoplasmic transport (GO:0016482);; Biological Process: protein deubiquitination (GO:0016579);; Biological Process: protein sumoylation (GO:0016925);; Molecular Function: SUMO ligase activity (GO:0019789);; Biological Process: histone H2B ubiquitination (GO:0033523);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular lipid metabolic process (GO:0044255);; Biological Process: establishment of protein localization to organelle (GO:0072594);; "	K10575|2e-57|zma:542600|ubc7, ZmUBC7	Ubiquitin-conjugating enzyme E2 7 GN=UBC7 OS=Triticum aestivum (Wheat) PE=2 SV=1	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: ubiquitin-conjugating enzyme E2 7-like isoform X1 [Setaria italica]
comp232337_c0	2.87E-06	2.776610993	up	--	--	--	--	--	--	--
comp206926_c0	0.000320168	2.100348378	up	--	--	"Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: IgE binding (GO:0019863);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: galacturan 1,4-alpha-galacturonidase activity (GO:0047911);; "	--	Polygalacturonase (Precursor) OS=Prunus persica (Peach) PE=2 SV=1	Uncharacterized protein GN=Si005178m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] 
comp184444_c0	0.005901163	-2.448541753	down	--	--	--	K14411|1e-08|vvi:100257917|hypothetical protein LOC100257917	--	Putative uncharacterized protein GN=VIT_05s0049g01660 OS=Vitis vinifera (Grape) PE=2 SV=1	PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
comp229768_c0	0.000622057	2.123403286	up	[S]	Function unknown 	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: ADP binding (GO:0043531);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: response to stimulus (GO:0050896);; "	--	Disease resistance protein RPS2 GN=RPS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si009303m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: disease resistance protein RPS2-like [Setaria italica]
comp233942_c0	1.08E-06	-2.934154207	down	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: nucleotide binding (GO:0000166);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: embryo development (GO:0009790);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Biological Process: phosphorylation (GO:0016310);; Biological Process: cell differentiation (GO:0030154);; Biological Process: response to lipid (GO:0033993);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: signaling receptor activity (GO:0038023);; Biological Process: cell wall modification (GO:0042545);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: innate immune response (GO:0045087);; Biological Process: gametophyte development (GO:0048229);; Biological Process: seed development (GO:0048316);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) GN=At4g26540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si013153m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Setaria italica]
comp133096_c0	1.05E-08	3.289471252	up	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: DNA metabolic process (GO:0006259);; Cellular Component: plastid (GO:0009536);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative copia-type polyprotein GN=OSJNBa0020E23.19 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Putative copia-type polyprotein [Oryza sativa Japonica Group]
comp231873_c0	0.004339069	1.806252516	up	--	--	--	--	Trans-splicing factor Raa3, chloroplastic (Precursor) GN=RAA3 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=1 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os09g0324300 [Oryza sativa Japonica Group] 
comp133245_c0	0.009242533	2.549716361	up	--	--	--	--	--	--	--
comp129966_c0	0.000144707	2.25698043	up	--	--	--	--	Early nodulin-93 OS=Glycine max (Soybean) PE=2 SV=1	Uncharacterized protein GN=Si007555m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein OsI_21583 [Oryza sativa Indica Group] 
comp224029_c0	1.74E-05	-2.57406495	down	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: tissue development (GO:0009888);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of growth (GO:0040008);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: organ development (GO:0048513);; Biological Process: developmental cell growth (GO:0048588);; Biological Process: response to stimulus (GO:0050896);; Biological Process: multi-organism process (GO:0051704);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: regulation of biological quality (GO:0065008);; "	--	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor) GN=At1g68400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si034593m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630-like isoform X3 [Setaria italica]
comp191492_c1	7.53E-13	5.542849946	up	[K]	Transcription 	"Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: regulation of RNA biosynthetic process (GO:2001141);; "	--	RNA polymerase sigma factor sigB (Precursor) GN=At1g08540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_71291 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_71291, partial [Aureococcus anophagefferens]
comp214494_c0	0.004313804	-3.727528392	down	--	--	"Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: binding (GO:0005488);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: defense response (GO:0006952);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: flower development (GO:0009908);; Molecular Function: heme binding (GO:0020037);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: response to other organism (GO:0051707);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cationic peroxidase SPC4 (Precursor) GN=Sb03g046810 OS=Sorghum bicolor (Sorghum) PE=1 SV=2	Uncharacterized protein GN=Si022615m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: peroxidase 2-like [Setaria italica]
comp215587_c0	7.40E-13	-5.7858815	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Protein IQ-DOMAIN 1 GN=IQD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb04g012650 GN=Sb04g012650 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein ZEAMMB73_900833 [Zea mays]
comp224609_c0	0.008765927	-2.143502716	down	--	--	--	--	--	--	--
comp229178_c0	0.00036141	-2.410382013	down	--	--	"Molecular Function: N-acetyltransferase activity (GO:0008080);; Biological Process: metabolic process (GO:0008152);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: unidimensional cell growth (GO:0009826);; "	--	--	Uncharacterized protein GN=Si035992m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101754705 [Setaria italica]
comp218303_c0	1.43E-07	2.83485454	up	--	--	--	--	--	Uncharacterized protein GN=F775_04256 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_04256 [Aegilops tauschii]
comp203001_c1	0.000515542	2.059755916	up	--	--	"Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Cellular Component: cell part (GO:0044464);; "	--	Cysteine-rich repeat secretory protein 55 (Precursor) GN=CRRSP55 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si022262m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cysteine-rich repeat secretory protein 55-like [Setaria italica]
comp219112_c0	1.29E-07	2.864040614	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: plastid (GO:0009536);; Molecular Function: metal ion binding (GO:0046872);; "	--	--	Uncharacterized protein GN=BRADI2G54500 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: zinc finger protein ZAT11-like [Brachypodium distachyon]
comp219333_c0	6.09E-10	3.349072894	up	[F]	Nucleotide transport and metabolism 	"Molecular Function: GMP reductase activity (GO:0003920);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: nucleotide metabolic process (GO:0009117);; Biological Process: cellular biosynthetic process (GO:0044249);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00088|1e-32|cre:CHLREDRAFT_193467|IMP dehydrogenase (EC:1.1.1.205)	GMP reductase OS=Phytophthora infestans (Potato late blight fungus) PE=2 SV=1	GMP reductase GN=PYU1_G007822 OS=Pythium ultimum PE=3 SV=1	"RecName: Full=GMP reductase; AltName: Full=Guanosine 5'-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase "
comp182522_c0	0.000638437	2.684747345	up	--	--	--	--	--	--	--
comp218233_c0	0.001460192	2.070768352	up	[S]	Function unknown 	"Biological Process: response to stress (GO:0006950);; Biological Process: organelle organization (GO:0006996);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: hyperosmotic salinity response (GO:0042538);; "	--	Hydrophobic protein LTI6B GN=OSJNBa0069I13.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Stress-induced hydrophobic peptide OS=Cleistogenes songorica PE=4 SV=1	stress-induced hydrophobic peptide [Cleistogenes songorica]
comp164460_c0	0.009246505	-1.76967215	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si027051m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101758470 [Setaria italica]
comp223550_c0	9.60E-06	2.509167389	up	--	--	--	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_846123 [Zea mays]
comp224528_c2	0.000533021	2.052656655	up	[C]	Energy production and conversion 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: cytosol (GO:0005829);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to hormone stimulus (GO:0009725);; Molecular Function: FMN binding (GO:0010181);; Molecular Function: 12-oxophytodienoate reductase activity (GO:0016629);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	12-oxophytodienoate reductase 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os06g0216300 [Oryza sativa Japonica Group] 
comp231857_c0	0.009824735	-1.760624403	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: steroid biosynthetic process (GO:0006694);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: abscisic acid metabolic process (GO:0009687);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: flower development (GO:0009908);; Molecular Function: (+)-abscisic acid 8'-hydroxylase activity (GO:0010295);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: cell differentiation (GO:0030154);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: external encapsulating structure organization (GO:0045229);; Biological Process: organ development (GO:0048513);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: release of seed from dormancy (GO:0048838);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Ent-kaurenoic acid oxidase 1 GN=KAO1 OS=Hordeum vulgare (Barley) PE=1 SV=1	cDNA clone:J023042H12, full insert sequence GN=LOC_Os10g23180 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	TPA: putative cytochrome P450 superfamily protein [Zea mays]
comp183494_c0	0.001367386	-2.667566333	down	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to osmotic stress (GO:0006970);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to metal ion (GO:0010038);; Biological Process: gene expression (GO:0010467);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: kinase activity (GO:0016301);; Biological Process: cytoplasmic transport (GO:0016482);; Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: histone lysine methylation (GO:0034968);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular lipid metabolic process (GO:0044255);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: innate immune response (GO:0045087);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: gametophyte development (GO:0048229);; Biological Process: floral organ development (GO:0048437);; Biological Process: floral whorl development (GO:0048438);; Biological Process: phyllome development (GO:0048827);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: organic substance transport (GO:0071702);; "	--	Pollen-specific protein SF3 GN=SF3 OS=Helianthus annuus (Common sunflower) PE=2 SV=1	Uncharacterized protein OS=Medicago truncatula (Barrel medic) PE=2 SV=1	GATA type zinc finger transcription factor family protein [Theobroma cacao]
comp223916_c1	0.002079229	-2.182042738	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: transport (GO:0006810);; Biological Process: drug transmembrane transport (GO:0006855);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: cadmium ion transmembrane transporter activity (GO:0015086);; Biological Process: cadmium ion transport (GO:0015691);; Biological Process: lead ion transport (GO:0015692);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: indole glucosinolate catabolic process (GO:0042344);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: negative regulation of MAP kinase activity (GO:0043407);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: cellular response to indolebutyric acid stimulus (GO:0071366);; Biological Process: abscisic acid transport (GO:0080168);; "	--	Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein GN=OsI_03578 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	RecName: Full=Pleiotropic drug resistance protein 15 
comp231934_c0	0.001024163	-2.056891545	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Biological Process: response to stress (GO:0006950);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: cell wall modification involved in abscission (GO:0009830);; Biological Process: auxin metabolic process (GO:0009850);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: carotene catabolic process (GO:0016121);; Biological Process: xanthophyll catabolic process (GO:0016124);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (Precursor) GN=OSJNBa0014K08.38 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si004644m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like [Setaria italica]
comp216726_c0	1.40E-05	-2.983717161	down	[J]	Translation, ribosomal structure and biogenesis 	"Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: cell wall polysaccharide metabolic process (GO:0010383);; Cellular Component: intrinsic to membrane (GO:0031224);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Classical arabinogalactan protein 26 (Precursor) GN=AGP26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein P0504E02.22 GN=P0504E02.22 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: vegetative cell wall protein gp1-like [Setaria italica]
comp207852_c0	7.36E-08	3.93571316	up	--	--	--	--	--	Putative uncharacterized protein P0610D01.28 GN=P0610D01.28 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_053697, partial [Zea mays]
comp217446_c1	0.000584219	-2.191987414	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Biological Process: cellular process (GO:0009987);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Formin-like protein 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si006190m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: aspartic proteinase Asp1-like [Setaria italica]
comp229982_c0	7.28E-05	2.613863456	up	--	--	"Cellular Component: plastid (GO:0009536);; Biological Process: phosphatidylinositol dephosphorylation (GO:0046856);; "	--	--	Putative uncharacterized protein Sb06g017270 GN=Sb06g017270 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_06g017270 [Sorghum bicolor] 
comp229080_c1	0.000566311	-2.353707982	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein (Fragment) GN=Si040127m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: putative DUF231 domain containing family protein [Zea mays]
comp226825_c1	9.46E-06	-2.91074687	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: developmental process involved in reproduction (GO:0003006);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: phosphorus metabolic process (GO:0006793);; Biological Process: amino acid transport (GO:0006865);; Biological Process: organelle organization (GO:0006996);; Biological Process: pattern specification process (GO:0007389);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to symbiotic fungus (GO:0009610);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: cellular protein metabolic process (GO:0044267);; Cellular Component: apical part of cell (GO:0045177);; Biological Process: alcohol biosynthetic process (GO:0046165);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: developmental cell growth (GO:0048588);; Biological Process: regulation of developmental growth (GO:0048638);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: regulation of multicellular organismal process (GO:0051239);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; "	--	Probable inactive receptor kinase At1g48480 (Precursor) GN=RKL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si015781m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable inactive receptor kinase At1g48480-like [Setaria italica]
comp222154_c0	0.000294157	2.141114826	up	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: cellular process (GO:0009987);; Molecular Function: amino acid binding (GO:0016597);; Cellular Component: cell part (GO:0044464);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035688m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101766229 [Setaria italica]
comp235592_c0	2.83E-08	2.989997052	up	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell differentiation (GO:0030154);; Biological Process: multicellular organismal process (GO:0032501);; Cellular Component: intracellular organelle (GO:0043229);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 3 (Precursor) GN=PEX3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=BRADI5G09800 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	hypothetical protein OsI_15861 [Oryza sativa Indica Group]
comp219171_c0	1.59E-05	2.398959414	up	--	--	"Biological Process: anaerobic respiration (GO:0009061);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: regulation of meristem growth (GO:0010075);; "	--	--	Putative uncharacterized protein GN=OsJ_15902 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_669467 [Zea mays]
comp210773_c1	6.21E-07	3.527299071	up	[E]	Amino acid transport and metabolism 	"Molecular Function: pyrroline-5-carboxylate reductase activity (GO:0004735);; Cellular Component: cell wall (GO:0005618);; Biological Process: proline biosynthetic process (GO:0006561);; Biological Process: response to heat (GO:0009408);; Biological Process: response to salt stress (GO:0009651);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00286|1e-58|vvi:100258887|hypothetical protein LOC100258887	Pyrroline-5-carboxylate reductase GN=T9L3_100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=PYU1_G003068 OS=Pythium ultimum PE=4 SV=1	delta-1-pyrroline-5-carboxylate reductase [Phytophthora nicotianae]
comp365594_c0	0.002096576	-2.230145357	down	--	--	--	--	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare] 
comp126317_c0	4.59E-06	4.515294307	up	--	--	--	--	--	--	--
comp231446_c0	0.006289204	1.845162191	up	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: manganese ion binding (GO:0030145);; Cellular Component: extracellular matrix (GO:0031012);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: apoplast (GO:0048046);; "	--	Germin-like protein 8-11 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_378483 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_378483 [Zea mays]
comp208743_c1	7.17E-05	-3.874082086	down	[RTKL]	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: regulation of response to biotic stimulus (GO:0002831);; Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: receptor signaling protein serine/threonine kinase activity (GO:0004702);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cell surface receptor signaling pathway (GO:0007166);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of chemical stimulus (GO:0009593);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: negative regulation of signal transduction (GO:0009968);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of cell death (GO:0010941);; Biological Process: regulation of anatomical structure morphogenesis (GO:0022603);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of defense response (GO:0031349);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: ion binding (GO:0043167);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: cellular component biogenesis (GO:0044085);; Biological Process: cellular polysaccharide metabolic process (GO:0044264);; Cellular Component: membrane part (GO:0044425);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: seed development (GO:0048316);; Biological Process: root development (GO:0048364);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cellular response to lipid (GO:0071396);; Biological Process: cell wall organization (GO:0071555);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; Molecular Function: carbohydrate derivative binding (GO:0097367);; "	--	Serine/threonine-protein kinase CTR1 GN=CTR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g025985 (Fragment) GN=Sb02g025985 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: probable serine/threonine-protein kinase DDB_G0267514-like [Setaria italica]
comp231684_c3	0.00173696	-2.089646317	down	--	--	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Biological Process: fatty acid metabolic process (GO:0006631);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 86A2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: cytochrome P450 86A2-like [Brachypodium distachyon]
comp217350_c0	0.002681619	1.925541426	up	--	--	"Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: methylation (GO:0032259);; "	K00547|4e-09|osa:4332095|Os03g0221200	Homocysteine S-methyltransferase 1 GN=HMT1 OS=Brassica oleracea var. italica (Broccoli) PE=1 SV=1	Uncharacterized protein GN=Si036632m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: homocysteine S-methyltransferase 1-like isoform X1 [Setaria italica] 
comp133259_c0	0.001622941	3.108721722	up	[RTKL]	--	"Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: binding (GO:0005488);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: cell death (GO:0008219);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: regulation of signal transduction (GO:0009966);; Biological Process: response to inorganic substance (GO:0010035);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: root development (GO:0048364);; Biological Process: meristem development (GO:0048507);; Biological Process: negative regulation of cellular process (GO:0048523);; Biological Process: negative regulation of response to stimulus (GO:0048585);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: cellular response to lipid (GO:0071396);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Biological Process: cellular response to alcohol (GO:0097306);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Serine/threonine-protein kinase HT1 GN=HT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=PGSC0003DMG400018644 OS=Solanum tuberosum (Potato) PE=4 SV=1	PREDICTED: serine/threonine-protein kinase TNNI3K-like isoform X1 [Setaria italica]
comp210860_c0	1.80E-08	3.105614188	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Cellular Component: plastid (GO:0009536);; Biological Process: flower development (GO:0009908);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: leaf development (GO:0048366);; Biological Process: organ development (GO:0048513);; Biological Process: photoperiodism, flowering (GO:0048573);; Biological Process: response to karrikin (GO:0080167);; "	--	B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb10g000740 GN=Sb10g000740 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g000740 [Sorghum bicolor] 
comp225440_c1	0.002363769	-3.366032158	down	[RTKL]	--	"Molecular Function: peptide receptor activity (GO:0001653);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane signaling receptor activity (GO:0004888);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: protoderm histogenesis (GO:0010068);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cuticle development (GO:0042335);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Biological Process: proteasome assembly (GO:0043248);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: shoot development (GO:0048367);; Biological Process: organ formation (GO:0048645);; Biological Process: root hair elongation (GO:0048767);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	Probable receptor-like protein kinase At2g42960 GN=At2g42960 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=pk8-b OS=Zea mays (Maize) PE=2 SV=1	putative protein kinase [Zea mays] 
comp233222_c0	0.000507585	2.130070859	up	[GEPR]	--	"Cellular Component: plant-type vacuole (GO:0000325);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: phosphate ion transport (GO:0006817);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: transmembrane transport (GO:0055085);; "	--	SPX domain-containing membrane protein Os06g0129400 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_333656 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_333656 [Zea mays]
comp216205_c0	1.16E-09	3.3489026	up	[E]	Amino acid transport and metabolism 	"Biological Process: tryptophan biosynthetic process (GO:0000162);; Biological Process: MAPK cascade (GO:0000165);; Molecular Function: tryptophan synthase activity (GO:0004834);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: gravitropism (GO:0009630);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: negative regulation of defense response (GO:0031348);; Molecular Function: indole-3-glycerol-phosphate lyase activity (GO:0033984);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; "	K13222|2e-23|sbi:SORBI_01g005150|hypothetical protein	Indole-3-glycerol phosphate lyase, chloroplastic (Precursor) GN=BX1 OS=Zea mays (Maize) PE=1 SV=2	Putative uncharacterized protein Sb01g005150 GN=Sb01g005150 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g005150 [Sorghum bicolor] 
comp133066_c0	0.000325234	2.102699988	up	--	--	--	K09422|5e-27|zma:100192609|hypothetical protein LOC100192609	--	Uncharacterized protein GN=Si030584m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb-related protein 330-like [Setaria italica]
comp217888_c0	0.007976079	-1.849544908	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: response to stress (GO:0006950);; Biological Process: signal transduction (GO:0007165);; Biological Process: protein localization (GO:0008104);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	Scarecrow-like protein 3 GN=SCL3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si009933m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: DELLA protein RGL1-like [Setaria italica]
comp248558_c0	3.16E-10	3.709300583	up	--	--	--	--	--	Uncharacterized protein GN=Si003551m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101768688 [Setaria italica]
comp219337_c0	3.46E-07	3.109366753	up	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: cellular component organization (GO:0016043);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein (Fragment) GN=OB02G20840 OS=Oryza brachyantha PE=4 SV=1	"RecName: Full=Vegetative cell wall protein gp1; AltName: Full=Hydroxyproline-rich glycoprotein 1; Flags: Precursor "
comp196384_c0	0.009567841	1.717065608	up	--	--	--	--	--	--	--
comp230224_c0	0.000195889	-2.670326027	down	[R]	General function prediction only 	"Biological Process: cytokinesis (GO:0000910);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: cell plate (GO:0009504);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: protein transport (GO:0015031);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: kinase binding (GO:0019900);; Biological Process: second-messenger-mediated signaling (GO:0019932);; Cellular Component: early endosome membrane (GO:0031901);; Biological Process: endocytic recycling (GO:0032456);; Cellular Component: trans-Golgi network membrane (GO:0032588);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Cellular Component: apical part of cell (GO:0045177);; Cellular Component: exocytic vesicle (GO:0070382);; Biological Process: regulation of pollen tube growth (GO:0080092);; Cellular Component: pollen tube tip (GO:0090404);; "	--	Ras-related protein RABA3 GN=RABA3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Musa acuminata subsp. malaccensis (Wild banana) PE=3 SV=1	PREDICTED: ras-related protein RABA3-like [Setaria italica]
comp205615_c0	0.000651172	-3.287766731	down	--	--	"Molecular Function: triglyceride lipase activity (GO:0004806);; Biological Process: triglyceride catabolic process (GO:0019433);; "	--	--	Putative uncharacterized protein AlNc14C205G8793 GN=AlNc14C205G8793 OS=Albugo laibachii Nc14 PE=4 SV=1	"RecName: Full=Cutinase; AltName: Full=Cutin hydrolase; Flags: Precursor "
comp224917_c0	5.39E-05	-4.395032845	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; Cellular Component: aleurone grain membrane (GO:0032578);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein [Zea mays] 
comp224978_c1	1.35E-09	3.217148729	up	[C]	Energy production and conversion 	"Molecular Function: protein binding (GO:0005515);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: ferredoxin metabolic process (GO:0006124);; Molecular Function: ferrous iron binding (GO:0008198);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: abscisic acid biosynthetic process (GO:0009688);; Cellular Component: membrane (GO:0016020);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: Golgi vesicle transport (GO:0048193);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: response to karrikin (GO:0080167);; "	K02639|2e-78|zma:541612|pco072676(750), FDX6	Ferredoxin-6, chloroplastic (Precursor) GN=FDX6 OS=Zea mays (Maize) PE=2 SV=1	Uncharacterized protein GN=Si023534m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ferredoxin-6, chloroplastic-like [Setaria italica]
comp223895_c0	1.43E-10	3.369637558	up	--	--	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Molecular Function: L-ascorbic acid binding (GO:0031418);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00472|0.0|sbi:SORBI_02g005750|hypothetical protein	--	Putative uncharacterized protein Sb02g005750 GN=Sb02g005750 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g005750 [Sorghum bicolor] 
comp218155_c0	0.003863515	1.831904292	up	--	--	"Cellular Component: PSII associated light-harvesting complex II (GO:0009517);; Biological Process: abscisic acid biosynthetic process (GO:0009688);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photoprotection (GO:0010117);; Biological Process: xanthophyll metabolic process (GO:0016122);; Biological Process: regulation of superoxide anion generation (GO:0032928);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si002759m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101761630 [Setaria italica]
comp233862_c1	5.42E-05	2.356586854	up	[V]	Defense mechanisms 	"Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: response to chemical stimulus (GO:0042221);; Cellular Component: cell part (GO:0044464);; "	--	MATE efflux family protein 9 GN=F3L12.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	MATE efflux family protein 9 [Triticum urartu]
comp230924_c2	0.005031438	-2.263706543	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; "	--	CASP-like protein Os02g0134500 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101779596 [Setaria italica]
comp208075_c1	0.008001662	1.789542417	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: ribosome (GO:0005840);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: translation (GO:0006412);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: histone H3-K9 methylation (GO:0051567);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	--	Ubiquitin OS=Avena sativa (Oat) PE=1 SV=1	Polyubiquitin 1 (Fragment) OS=Phaseolus vulgaris (Kidney bean) PE=1 SV=1	polyubiquitin 1 [Phaseolus vulgaris]
comp221240_c0	9.84E-05	2.854316591	up	--	--	--	--	--	--	--
comp129322_c0	0	6.379035439	up	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: system development (GO:0048731);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: response to stimulus (GO:0050896);; Biological Process: cell wall organization (GO:0071555);; Cellular Component: cell periphery (GO:0071944);; "	--	Extensin (Precursor) GN=HRGP OS=Zea mays (Maize) PE=2 SV=1	Putative uncharacterized protein Sb04g010730 GN=Sb04g010730 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g010730 [Sorghum bicolor] 
comp152984_c0	6.26E-05	-2.655131843	down	--	--	--	--	Citrate-binding protein (Precursor) GN=CBP OS=Hevea brasiliensis (Para rubber tree) PE=1 SV=1	Uncharacterized protein GN=Si028260m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: citrate-binding protein-like [Setaria italica]
comp229755_c0	0.000234743	-2.233134636	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein (Fragment) GN=Si039024m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101777146 [Setaria italica]
comp220592_c1	0.003270474	-2.15001516	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Molecular Function: N-acyltransferase activity (GO:0016410);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: external encapsulating structure organization (GO:0045229);; Molecular Function: agmatine N4-coumaroyltransferase activity (GO:0047634);; Biological Process: system development (GO:0048731);; Molecular Function: O-hydroxycinnamoyltransferase activity (GO:0050737);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: response to stimulus (GO:0050896);; Biological Process: localization (GO:0051179);; "	--	Agmatine coumaroyltransferase-2 GN=ACT-2 OS=Hordeum vulgare (Barley) PE=1 SV=1	Uncharacterized protein GN=Si026367m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: agmatine coumaroyltransferase-2-like [Setaria italica]
comp211710_c0	2.45E-09	3.186456682	up	--	--	--	--	--	Uncharacterized protein GN=Si031079m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor RAP2-3-like [Setaria italica]
comp308023_c0	0.001251901	2.66407487	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; "	--	50S ribosomal protein L27, chloroplastic GN=rpl27 OS=Thalassiosira pseudonana (Marine diatom) PE=3 SV=1	50S ribosomal protein L27, chloroplastic GN=rpl27 OS=Kryptoperidinium foliaceum PE=3 SV=1	50S ribosomal protein L27 [Thalassiosira pseudonana] 
comp233130_c0	1.53E-10	3.533373923	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: RNA binding (GO:0003723);; Cellular Component: ribosome (GO:0005840);; Cellular Component: plastid (GO:0009536);; "	--	50S ribosomal protein L2, chloroplastic GN=rpl2 OS=Oltmannsiellopsis viridis (Marine flagellate) PE=3 SV=1	50S ribosomal protein L2, chloroplastic GN=rpl2 OS=Pedinomonas minor PE=3 SV=1	rpl2 gene product (chloroplast) [Pedinomonas minor] 
comp235053_c1	0.000212543	-2.572113634	down	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: nucleotide binding (GO:0000166);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: procambium histogenesis (GO:0010067);; Biological Process: protoderm histogenesis (GO:0010068);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: xylem development (GO:0010089);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: response to UV-B (GO:0010224);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: microsporocyte differentiation (GO:0010480);; Biological Process: pollen exine formation (GO:0010584);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: beta-amylase activity (GO:0016161);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: cellular cation homeostasis (GO:0030003);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: cuticle development (GO:0042335);; Molecular Function: protein homodimerization activity (GO:0042803);; Cellular Component: protein complex (GO:0043234);; Molecular Function: protein self-association (GO:0043621);; Biological Process: protein autophosphorylation (GO:0046777);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: tapetal cell differentiation (GO:0048657);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: divalent metal ion transport (GO:0070838);; Biological Process: cell wall organization (GO:0071555);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; Biological Process: regulation of seedling development (GO:1900140);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) GN=At4g26540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g027710 GN=Sb02g027710 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g027710 [Sorghum bicolor] 
comp126402_c0	4.04E-05	3.594013462	up	[C]	Energy production and conversion 	"Molecular Function: dihydrolipoyl dehydrogenase activity (GO:0004148);; Molecular Function: glycine dehydrogenase (decarboxylating) activity (GO:0004375);; Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591);; Molecular Function: pyruvate dehydrogenase activity (GO:0004738);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrial respiratory chain complex I (GO:0005747);; Cellular Component: mitochondrial matrix (GO:0005759);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: glycine cleavage complex (GO:0005960);; Biological Process: pyruvate metabolic process (GO:0006090);; Biological Process: glycolysis (GO:0006096);; Biological Process: 2-oxoglutarate metabolic process (GO:0006103);; Biological Process: protein glycosylation (GO:0006486);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: isoleucine catabolic process (GO:0006550);; Biological Process: leucine catabolic process (GO:0006552);; Biological Process: L-serine biosynthetic process (GO:0006564);; Biological Process: valine catabolic process (GO:0006574);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: aerobic respiration (GO:0009060);; Cellular Component: mitochondrial oxoglutarate dehydrogenase complex (GO:0009353);; Cellular Component: chloroplast (GO:0009507);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Cellular Component: mitochondrial nucleoid (GO:0042645);; Biological Process: hydrogen peroxide metabolic process (GO:0042743);; Biological Process: mycelium development (GO:0043581);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: cobalt ion binding (GO:0050897);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00382|7e-49|cme:CMM299C|dihydrolipoamide dehydrogenase	Dihydrolipoyl dehydrogenase 1, mitochondrial (Precursor) GN=LPD1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Dihydrolipoyl dehydrogenase OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	unnamed protein product [Podospora anserina]
comp271036_c0	0.005817192	2.115726855	up	--	--	--	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp208870_c0	0.001204452	2.080860876	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: cytosol (GO:0005829);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: membrane (GO:0016020);; Biological Process: D-gluconate metabolic process (GO:0019521);; Biological Process: amino acid import (GO:0043090);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: NADP binding (GO:0050661);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	K00033|0.0|osa:4350528|Os11g0484500	6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic (Precursor) GN=G6PGH2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	6-phosphogluconate dehydrogenase, decarboxylating GN=Sb05g016740 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like [Setaria italica]
comp215058_c0	0.007344489	1.90510553	up	--	--	"Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; "	--	Uncharacterized protein At4g22160 GN=At4g22160 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si030430m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101766022 [Setaria italica]
comp130621_c0	0.00012944	-2.379790066	down	--	--	--	--	--	--	--
comp225166_c5	0.006569125	-2.928188777	down	--	--	"Cellular Component: plastid (GO:0009536);; Cellular Component: cell part (GO:0044464);; "	--	Proline-rich receptor-like protein kinase PERK8 GN=PERK8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si005828m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_979725, partial [Zea mays]
comp200249_c0	0.000765738	-2.330244774	down	--	--	--	--	--	cDNA clone:J013056K06, full insert sequence GN=LOC_Os03g46260 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os03g0665200 [Oryza sativa Japonica Group] 
comp178060_c0	4.03E-14	6.220289714	up	--	--	--	--	--	--	--
comp221838_c0	0.000550474	2.073016387	up	[K]	Transcription 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: protein folding (GO:0006457);; Biological Process: response to stress (GO:0006950);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to chitin (GO:0010200);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of cellular protein metabolic process (GO:0032268);; Biological Process: cellular response to heat (GO:0034605);; Biological Process: cellular response to unfolded protein (GO:0034620);; Biological Process: response to hydrogen peroxide (GO:0042542);; Cellular Component: intracellular part (GO:0044424);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to hypoxia (GO:0071456);; "	--	Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100191641 [Zea mays] 
comp230875_c0	6.02E-05	-2.365504263	down	[E]	Amino acid transport and metabolism 	"Biological Process: response to hypoxia (GO:0001666);; Molecular Function: gamma-glutamyltransferase activity (GO:0003840);; Molecular Function: L-alanine:2-oxoglutarate aminotransferase activity (GO:0004021);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glutathione catabolic process (GO:0006751);; Biological Process: xenobiotic metabolic process (GO:0006805);; Biological Process: water transport (GO:0006833);; Molecular Function: alanine-glyoxylate transaminase activity (GO:0008453);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: photorespiration (GO:0009853);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity (GO:0016756);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: glutathione transmembrane transport (GO:0034775);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: cellular lipid catabolic process (GO:0044242);; Molecular Function: glycine:2-oxoglutarate aminotransferase activity (GO:0047958);; Cellular Component: apoplast (GO:0048046);; "	K00681|0.0|sbi:SORBI_03g006000|hypothetical protein	Gamma-glutamyltranspeptidase 3 GN=F17A13.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si000659m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: gamma-glutamyltranspeptidase 3-like isoform X1 [Setaria italica] 
comp472075_c0	0.006133771	-3.665591194	down	--	--	--	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein (Fragment) GN=OB04G37630 OS=Oryza brachyantha PE=4 SV=1	--
comp226384_c0	1.21E-05	2.440142037	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: pollen development (GO:0009555);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: tissue development (GO:0009888);; Biological Process: homogalacturonan biosynthetic process (GO:0010289);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: xylan biosynthetic process (GO:0045492);; Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity (GO:0047262);; Cellular Component: pollen tube (GO:0090406);; "	--	Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si020048m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable galacturonosyltransferase 9-like [Setaria italica]
comp244923_c0	2.51E-05	-2.504621885	down	--	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: electron transport chain (GO:0022900);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: secondary metabolite biosynthetic process (GO:0044550);; Cellular Component: anchored to plasma membrane (GO:0046658);; Cellular Component: apoplast (GO:0048046);; Biological Process: response to stimulus (GO:0050896);; "	--	Blue copper protein (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1	Uncharacterized protein GN=OB02G33510 OS=Oryza brachyantha PE=4 SV=1	PREDICTED: blue copper protein-like [Setaria italica]
comp214548_c0	6.93E-05	-2.372924132	down	--	--	--	--	--	Uncharacterized protein GN=Solyc11g010390.1 OS=Solanum lycopersicum (Tomato) PE=4 SV=1	--
comp225279_c0	0.000668487	2.063364509	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of cell death (GO:0010941);; Biological Process: cellular response to heat (GO:0034605);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to freezing (GO:0071497);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; "	--	Ethylene-responsive transcription factor ERF014 GN=ERF014 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si007977m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor ERF014-like [Setaria italica]
comp230305_c0	0.000120596	2.202276174	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si020727m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101757316 [Setaria italica]
comp237581_c0	4.68E-09	4.526738432	up	[O]	Posttranslational modification, protein turnover, chaperones 	--	--	Ubiquitin (Precursor) OS=Triticum aestivum (Wheat) PE=3 SV=2	Ubiquitin 10 (Fragment) GN=UBQ10 OS=Echinochloa phyllopogon PE=2 SV=1	ubiquitin [Phanerochaete chrysosporium]
comp217072_c1	0.005051985	-1.877414543	down	--	--	--	--	--	Uncharacterized protein GN=Si034382m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: trihelix transcription factor GTL1-like isoform X1 [Setaria italica]
comp218294_c0	0.007343842	-2.001985076	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: copper ion transport (GO:0006825);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: sucrose transmembrane transporter activity (GO:0008515);; Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: plastid (GO:0009536);; Biological Process: pollen development (GO:0009555);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anther dehiscence (GO:0009901);; Biological Process: leaf senescence (GO:0010150);; Biological Process: sucrose transport (GO:0015770);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: sugar transmembrane transporter activity (GO:0051119);; Biological Process: cellular response to abscisic acid stimulus (GO:0071215);; Biological Process: cellular response to salicylic acid stimulus (GO:0071446);; Biological Process: cellular response to osmotic stress (GO:0071470);; "	--	Bidirectional sugar transporter SWEET15 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si017821m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: bidirectional sugar transporter SWEET15-like [Setaria italica]
comp216918_c2	0.009890524	2.662508131	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: translation (GO:0006412);; Biological Process: translational elongation (GO:0006414);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: pyrimidine ribonucleotide biosynthetic process (GO:0009220);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: cobalt ion binding (GO:0050897);; "	K02358|1e-112|ota:Ot05g04960|elongation factor Tu (ISS)	Elongation factor Tu, cyanelle GN=tufA OS=Cyanophora paradoxa PE=3 SV=2	Elongation factor Tu GN=POPTRDRAFT_793806 OS=Populus trichocarpa (Western balsam poplar) PE=3 SV=1	hypothetical protein CHLNCDRAFT_19551, partial [Chlorella variabilis]
comp214679_c0	0.000125523	-3.5162266	down	--	--	"Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Cellular Component: apoplast (GO:0048046);; Biological Process: mucilage metabolic process involved seed coat development (GO:0048359);; Biological Process: mucilage extrusion from seed coat (GO:0080001);; "	--	Cucumisin (Precursor) OS=Cucumis melo (Muskmelon) PE=1 SV=1	Uncharacterized protein GN=OB05G25620 OS=Oryza brachyantha PE=4 SV=1	putative subtilase family protein [Zea mays]
comp200239_c0	0.002170004	-3.843954585	down	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: cellular process (GO:0009987);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si010533m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like [Setaria italica]
comp229685_c0	0.001075868	1.98578396	up	--	--	"Biological Process: immune system process (GO:0002376);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen-pistil interaction (GO:0009875);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular membrane organization (GO:0016044);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: cellular protein localization (GO:0034613);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: recognition of pollen (GO:0048544);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Receptor-like serine/threonine-protein kinase SD1-8 (Precursor) GN=T6K22.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Serine/threonine-protein kinase GN=Sb01g016720 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: receptor-like serine/threonine-protein kinase SD1-8-like [Setaria italica]
comp233252_c1	0.001502961	-2.241079755	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: amino acid transport (GO:0006865);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: response to insect (GO:0009625);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to salt stress (GO:0071472);; Biological Process: regulation of stomatal closure (GO:0090333);; Biological Process: negative regulation of defense response to bacterium (GO:1900425);; "	--	L-type lectin-domain containing receptor kinase IV.1 (Precursor) GN=F13M22.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si034465m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Setaria italica]
comp195848_c0	0.000117694	-2.291070615	down	[S]	Function unknown 	"Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: ion transport (GO:0006811);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to nitric oxide (GO:0071732);; "	--	Vacuolar iron transporter homolog 5 GN=OSJNBa0070M12.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=3	Putative uncharacterized protein Sb06g033760 GN=Sb06g033760 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g033760 [Sorghum bicolor] 
comp129381_c0	6.07E-06	-3.116116651	down	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si017386m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101764232 [Setaria italica]
comp266858_c0	0.002508439	-2.108167995	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: signal transduction (GO:0007165);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: regulation of biosynthetic process (GO:0009889);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: response to other organism (GO:0051707);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: regulation of primary metabolic process (GO:0080090);; "	--	Thaumatin-like protein (Precursor) GN=At1g18250 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein GN=OsI_24266 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	hypothetical protein OsI_24266 [Oryza sativa Indica Group]
comp209573_c0	0.004303266	-2.815827638	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Biological Process: response to heat (GO:0009408);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: heat acclimation (GO:0010286);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: protein oligomerization (GO:0051259);; "	--	18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si018487m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: 18.9 kDa heat shock protein-like [Setaria italica]
comp131801_c0	4.58E-09	4.801565667	up	[J]	Translation, ribosomal structure and biogenesis 	--	--	--	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_71291 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_71291, partial [Aureococcus anophagefferens]
comp226515_c0	0.000118314	-2.46485117	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Molecular Function: cellulase activity (GO:0008810);; Biological Process: response to nematode (GO:0009624);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: specification of floral organ identity (GO:0010093);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellulose catabolic process (GO:0030245);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: carpel development (GO:0048440);; "	--	Endoglucanase 2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si000642m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: endoglucanase 2-like [Setaria italica]
comp234599_c0	0.000110999	2.252111727	up	[H]	Coenzyme transport and metabolism 	"Molecular Function: phosphopantothenoylcysteine decarboxylase activity (GO:0004633);; Cellular Component: cytosol (GO:0005829);; Molecular Function: FMN binding (GO:0010181);; Biological Process: coenzyme A biosynthetic process (GO:0015937);; Biological Process: hyperosmotic salinity response (GO:0042538);; "	K01598|3e-99|zma:100192815|hypothetical protein LOC100192815	Phosphopantothenoylcysteine decarboxylase GN=HAL3A OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si006863m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	uncharacterized protein LOC100192815 [Zea mays] 
comp130533_c0	0.000974158	1.992204177	up	--	--	--	--	--	Uncharacterized protein GN=Si023783m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_533944 [Zea mays]
comp214677_c1	0.002671323	2.739138011	up	--	--	--	--	--	--	--
comp230326_c0	0.000751681	-2.112473455	down	--	--	"Cellular Component: plastid (GO:0009536);; Biological Process: cellular process (GO:0009987);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016978m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_788348 [Zea mays]
comp128296_c0	0.000351128	-2.784550788	down	--	--	--	--	Proline-rich receptor-like protein kinase PERK9 GN=PERK9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002872m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101782161 [Setaria italica]
comp231124_c0	0.003223403	1.862522959	up	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: cytosol (GO:0005829);; Cellular Component: ribosome (GO:0005840);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root development (GO:0048364);; Biological Process: response to stimulus (GO:0050896);; Biological Process: cell division (GO:0051301);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si017861m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase EL5-like [Setaria italica]
comp222360_c1	0.005468412	-2.777143484	down	[C]	Energy production and conversion 	"Biological Process: ion transport (GO:0006811);; Biological Process: metabolic process (GO:0008152);; Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2	Uncharacterized protein GN=BRADI4G11550 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: aldo-keto reductase-like [Setaria italica]
comp207487_c0	0.001184594	1.987274596	up	--	--	--	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_750551 [Zea mays]
comp129115_c0	0.004834709	-1.872253356	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: lipid metabolic process (GO:0006629);; Biological Process: cellular process (GO:0009987);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; "	--	Formin-like protein 6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Predicted protein (Fragment) OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101754851 isoform X2 [Setaria italica]
comp232997_c0	6.20E-05	2.381979764	up	[R]	General function prediction only 	--	--	Uncharacterized protein At5g05190 GN=Y-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si034597m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At5g05190-like [Setaria italica]
comp204520_c0	0.000791324	2.003124132	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: binding (GO:0005488);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to anoxia (GO:0034059);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: transcription factor import into nucleus (GO:0042991);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cotyledon development (GO:0048825);; Biological Process: defense response to fungus (GO:0050832);; "	--	Ethylene-responsive transcription factor ERF114 GN=ERF114 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si010289m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	putative AP2/EREBP transcription factor superfamily protein [Zea mays]
comp229883_c0	0.004815093	-1.860513956	down	[T]	Signal transduction mechanisms 	"Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: negative regulation of protein kinase activity (GO:0006469);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: photoinhibition (GO:0010205);; Cellular Component: cis-Golgi network membrane (GO:0033106);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: cellular lipid metabolic process (GO:0044255);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: release of seed from dormancy (GO:0048838);; "	K14497|0.0|sbi:SORBI_02g022090|hypothetical protein	Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si030198m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable protein phosphatase 2C 68-like [Setaria italica]
comp223244_c0	7.12E-06	2.50662251	up	--	--	--	--	--	Uncharacterized protein GN=Si023655m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781322 [Setaria italica]
comp180267_c0	3.62E-07	2.763476732	up	--	--	"Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Formin-like protein 6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	hypothetical protein F775_42468 [Aegilops tauschii]
comp216338_c0	2.92E-09	3.350203578	up	--	--	--	--	--	Uncharacterized protein GN=OB01G21860 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein F775_20512 [Aegilops tauschii]
comp217116_c0	4.91E-05	2.330685865	up	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: stomatal movement (GO:0010118);; Biological Process: leaf senescence (GO:0010150);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Biological Process: gene expression (GO:0010467);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: mRNA metabolic process (GO:0016071);; Cellular Component: nuclear speck (GO:0016607);; Biological Process: mannitol biosynthetic process (GO:0019593);; Biological Process: calcium-mediated signaling (GO:0019722);; Cellular Component: interchromatin granule (GO:0035061);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: defense response to fungus (GO:0050832);; "	--	CBL-interacting protein kinase 19 GN=P0022D06.5 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si022225m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g025420 [Sorghum bicolor] 
comp234857_c0	0.003336127	-2.289361075	down	--	--	"Biological Process: immune effector process (GO:0002252);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to bacterium (GO:0009617);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: shoot development (GO:0048367);; Biological Process: meristem development (GO:0048507);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: GTPase binding (GO:0051020);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; Biological Process: organic substance transport (GO:0071702);; Biological Process: nitrogen compound transport (GO:0071705);; "	--	Putative leucine-rich repeat receptor-like protein kinase At2g19210 (Precursor) GN=At2g19210 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=Si017456m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable receptor-like protein kinase At1g33260-like [Setaria italica]
comp214716_c0	0.000308059	2.140316571	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: macromolecule catabolic process (GO:0009057);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to light intensity (GO:0009642);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to water deprivation (GO:0042631);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Acidic endochitinase (Precursor) OS=Phaseolus angularis (Azuki bean) PE=2 SV=1	Uncharacterized protein GN=Si002419m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: acidic endochitinase-like [Setaria italica]
comp174395_c2	0.000320399	-2.608128883	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: copper ion transmembrane transporter activity (GO:0005375);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: zinc ion transport (GO:0006829);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: response to stress (GO:0006950);; Biological Process: gravitropism (GO:0009630);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: metal ion transmembrane transporter activity (GO:0046873);; Biological Process: response to stimulus (GO:0050896);; Biological Process: transmembrane transport (GO:0055085);; "	K14709|6e-79|sbi:SORBI_03g047340|hypothetical protein	Zinc transporter 1 (Precursor) GN=P0518C01.26 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative uncharacterized protein Sb03g047340 GN=Sb03g047340 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g047340 [Sorghum bicolor] 
comp227022_c1	1.96E-05	-2.483459785	down	[KAD]	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: polyamine catabolic process (GO:0006598);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cinnamic acid biosynthetic process (GO:0009800);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: seed germination (GO:0009845);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to UV-B (GO:0010224);; Biological Process: regulation of glucosinolate biosynthetic process (GO:0010439);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: mucilage biosynthetic process involved in seed coat development (GO:0048354);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of phenylpropanoid metabolic process (GO:2000762);; "	K09422|1e-110|sbi:SORBI_02g030900|hypothetical protein	Protein ODORANT1 GN=ODO1 OS=Petunia hybrida (Petunia) PE=2 SV=1	Uncharacterized protein GN=Si030750m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein ODORANT1-like [Setaria italica]
comp180702_c0	7.71E-06	2.622451396	up	--	--	--	--	--	Uncharacterized protein GN=OB03G14880 OS=Oryza brachyantha PE=4 SV=1	--
comp203617_c0	6.40E-05	2.342862775	up	--	--	--	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101772223 isoform X3 [Setaria italica]
comp230498_c2	9.41E-06	-3.226230181	down	[E]	Amino acid transport and metabolism 	"Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: vacuole (GO:0005773);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular organelle part (GO:0044446);; "	K09645|1e-148|sbi:SORBI_09g029790|hypothetical protein	Serine carboxypeptidase-like 50 (Precursor) GN=SCPL50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si022059m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: serine carboxypeptidase-like 50-like [Setaria italica]
comp231035_c0	0.006172752	1.966909644	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to hypoxia (GO:0001666);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: leaf senescence (GO:0010150);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: protein histidine kinase binding (GO:0043424);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: defense response to fungus (GO:0050832);; "	--	NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	NAC transcription factor (Fragment) OS=Zea mays (Maize) PE=2 SV=1	NAC transcription factor [Zea mays]
comp211391_c3	0.000806659	-4.002673033	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: flower development (GO:0009908);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: histone modification (GO:0016570);; Biological Process: gene silencing by RNA (GO:0031047);; Biological Process: regulation of protein localization (GO:0032880);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Biological Process: macromolecule methylation (GO:0043414);; Cellular Component: anchored to plasma membrane (GO:0046658);; "	--	Glucan endo-1,3-beta-glucosidase 11 (Precursor) GN=At1g32860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative beta-1,3-glucanase GN=311G2.1 OS=Pennisetum americanum (Pearl millet) PE=3 SV=1	putative beta-1,3-glucanase [Cenchrus americanus]
comp133219_c0	1.99E-05	2.512258505	up	--	--	--	--	--	Defense-responsive protein (Fragment) OS=Leersia tisserantii PE=4 SV=1	defense-responsive protein, partial [Leersia tisserantii]
comp227976_c0	1.71E-05	-2.675312246	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: binding (GO:0005488);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: cellular amino acid metabolic process (GO:0006520);; Biological Process: sulfur compound metabolic process (GO:0006790);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: seed germination (GO:0009845);; Biological Process: positive regulation of biosynthetic process (GO:0009891);; Biological Process: red or far-red light signaling pathway (GO:0010017);; Biological Process: transmitting tissue development (GO:0010500);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Biological Process: cellular lipid metabolic process (GO:0044255);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: carpel formation (GO:0048462);; Biological Process: regulation of post-embryonic development (GO:0048580);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: cofactor biosynthetic process (GO:0051188);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: ovary septum development (GO:0080126);; "	--	Transcription factor bHLH113 GN=MLD14.24 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si036666m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor bHLH68-like [Setaria italica]
comp228418_c0	1.48E-08	5.120886146	up	--	--	--	--	--	--	PREDICTED: uncharacterized protein LOC101260043 [Solanum lycopersicum]
comp130012_c0	0.000139678	2.210575361	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protein binding (GO:0005515);; Biological Process: phototropism (GO:0009638);; Biological Process: positive gravitropism (GO:0009958);; "	--	Chaperone protein dnaJ 20, chloroplastic (Precursor) GN=F18A5.220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb02g023200 GN=Sb02g023200 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g023200 [Sorghum bicolor] 
comp215606_c0	0.00912453	-1.801802251	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036768m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g016700 [Sorghum bicolor] 
comp213945_c0	0.003054226	-2.243549827	down	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: amino acid transport (GO:0006865);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root development (GO:0048364);; Biological Process: cell division (GO:0051301);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	Probable E3 ubiquitin-protein ligase RHA2B GN=RHA2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=OB04G13880 OS=Oryza brachyantha PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Setaria italica]
comp224278_c1	0.008402471	-2.326124775	down	[P]	Inorganic ion transport and metabolism 	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: metal ion binding (GO:0046872);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 3 (Precursor) GN=PEX3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Inhibitor of apoptosis-like protein OS=Zea mays (Maize) PE=2 SV=1	TPA: putative RING zinc finger domain superfamily protein [Zea mays]
comp221596_c0	8.62E-08	4.945831399	up	--	--	"Biological Process: RNA processing (GO:0006396);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: ribosome biogenesis (GO:0042254);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular non-membrane-bounded organelle (GO:0043232);; Biological Process: system development (GO:0048731);; "	K11275|8e-26|osa:4334439|Os03g0799000	Histone H1-II GN=H1-II OS=Volvox carteri (Green alga) PE=2 SV=3	cDNA clone:J013072E13, full insert sequence GN=LOC_Os03g58470 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os03g0799000 [Oryza sativa Japonica Group] 
comp187477_c0	0.002363769	-3.366032158	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: DNA methylation (GO:0006306);; Biological Process: mRNA processing (GO:0006397);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: cell cycle (GO:0007049);; Biological Process: cell proliferation (GO:0008283);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: posttranscriptional regulation of gene expression (GO:0010608);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: gene silencing (GO:0016458);; Biological Process: nucleobase-containing compound biosynthetic process (GO:0034654);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: floral organ formation (GO:0048449);; Biological Process: meristem development (GO:0048507);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: histone H3-K9 methylation (GO:0051567);; Biological Process: cellular response to organic substance (GO:0071310);; Cellular Component: Cul4-RING ubiquitin ligase complex (GO:0080008);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; "	K11274|1e-140|sbi:SORBI_10g019730|hypothetical protein	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog GN=CHLREDRAFT_130093 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=3 SV=1	Uncharacterized protein GN=Si009255m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: WD repeat and HMG-box DNA-binding protein 1-like [Setaria italica]
comp230992_c0	8.07E-07	-3.129239672	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein Sb06g021520 GN=Sb06g021520 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g021520 [Sorghum bicolor] 
comp167008_c0	4.64E-09	-3.456321184	down	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: phenylpropanoid metabolic process (GO:0009698);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: small molecule biosynthetic process (GO:0044283);; Cellular Component: cell part (GO:0044464);; "	--	Dirigent protein 1 (Precursor) GN=DIR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb02g000680 GN=Sb02g000680 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g000680 [Sorghum bicolor] 
comp166766_c0	1.14E-05	3.559702237	up	--	--	--	--	--	Putative uncharacterized protein Sb01g030328 (Fragment) GN=Sb01g030328 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g030328 [Sorghum bicolor] 
comp229123_c0	8.16E-06	2.605919956	up	[J]	Translation, ribosomal structure and biogenesis 	"Biological Process: signal transduction (GO:0007165);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	Protein ETHYLENE INSENSITIVE 3 GN=EIN3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g043350 GN=Sb02g043350 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g043350 [Sorghum bicolor] 
comp208698_c1	1.12E-05	-3.279401644	down	--	--	--	--	Putative disease resistance RPP13-like protein 3 GN=RPP13L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Putative uncharacterized protein Sb05g027470 GN=Sb05g027470 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g027470 [Sorghum bicolor] 
comp192457_c0	8.42E-07	2.671957311	up	[J]	Translation, ribosomal structure and biogenesis 	--	--	--	Putative uncharacterized protein Sb10g026980 GN=Sb10g026980 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: auxin-induced protein 10A5-like [Setaria italica]
comp213844_c0	0.00044765	2.078606714	up	[TZDR]	--	"Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: double fertilization forming a zygote and endosperm (GO:0009567);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: trichome branching (GO:0010091);; Molecular Function: metal ion binding (GO:0046872);; "	--	Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si010908m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable calcium-binding protein CML22-like [Setaria italica]
comp234166_c9	0.003854214	-3.016194799	down	[L]	Replication, recombination and repair 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: nucleus (GO:0005634);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: chromatin assembly or disassembly (GO:0006333);; Biological Process: proteolysis (GO:0006508);; Molecular Function: integrase activity (GO:0008907);; Biological Process: DNA integration (GO:0015074);; "	--	Uncharacterized mitochondrial protein AtMg00860 GN=AtMg00860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	OSIGBa0114M03.4 protein GN=OSIGBa0114M03.4 OS=Oryza sativa (Rice) PE=4 SV=1	OSIGBa0114M03.4 [Oryza sativa Indica Group]
comp227985_c0	7.64E-06	2.493166305	up	[R]	General function prediction only 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: protein binding (GO:0005515);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: asymmetric cell division (GO:0008356);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to blue light (GO:0009637);; Biological Process: photomorphogenesis (GO:0009640);; Molecular Function: auxin:hydrogen symporter activity (GO:0009672);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: determination of bilateral symmetry (GO:0009855);; Cellular Component: auxin efflux carrier complex (GO:0009921);; Cellular Component: basal plasma membrane (GO:0009925);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: regulation of root meristem growth (GO:0010082);; Biological Process: xylem development (GO:0010089);; Biological Process: response to far red light (GO:0010218);; Biological Process: inflorescence development (GO:0010229);; Biological Process: auxin homeostasis (GO:0010252);; Biological Process: auxin efflux (GO:0010315);; Biological Process: leaf formation (GO:0010338);; Biological Process: leaf shaping (GO:0010358);; Cellular Component: vesicle membrane (GO:0012506);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: lateral plasma membrane (GO:0016328);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Cellular Component: apical part of cell (GO:0045177);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: stamen development (GO:0048443);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: root hair initiation (GO:0048766);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cotyledon morphogenesis (GO:0048826);; Biological Process: adventitious root development (GO:0048830);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: biological regulation (GO:0065007);; Biological Process: cell wall organization (GO:0071555);; "	K13947|0.0|sbi:SORBI_03g037350|hypothetical protein	Probable auxin efflux carrier component 5 GN=P0003D09.37 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb03g037350 GN=Sb03g037350 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g037350 [Sorghum bicolor] 
comp213932_c0	1.58E-08	3.123378567	up	--	--	--	--	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp217809_c0	3.42E-06	-2.943300892	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: defense response (GO:0006952);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g013960 GN=Sb01g013960 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g013960 [Sorghum bicolor] 
comp223848_c0	6.92E-07	2.683948697	up	[M]	Cell wall/membrane/envelope biogenesis 	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035023m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC100839575 [Brachypodium distachyon]
comp170022_c0	0.0097122	-1.75979371	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_193135 OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101780233 [Setaria italica]
comp225953_c0	2.04E-07	-3.248965347	down	[G]	Carbohydrate transport and metabolism 	--	K01053|3e-18|ppp:PHYPADRAFT_63780|hypothetical protein	--	Uncharacterized protein GN=PHYPADRAFT_63780 OS=Physcomitrella patens subsp. patens (Moss) PE=4 SV=1	predicted protein [Physcomitrella patens subsp. patens] 
comp207077_c0	5.51E-06	2.66113555	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: cellular process (GO:0009987);; "	--	Probable F-box protein At1g60180 GN=At2g36090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb08g003520 GN=Sb08g003520 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g003520 [Sorghum bicolor] 
comp219579_c0	5.95E-07	3.213627792	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	cDNA clone:006-209-F07, full insert sequence GN=OsJ_13535 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	H0201G08.4 [Oryza sativa Indica Group] 
comp209678_c1	0.004344984	1.813487744	up	--	--	"Biological Process: defense response to nematode (GO:0002215);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cell wall (GO:0005618);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: metabolic process (GO:0008152);; Biological Process: flower development (GO:0009908);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Peroxidase 52 (Precursor) GN=K18I23.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si017097m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: peroxidase 52-like [Setaria italica]
comp225265_c3	0.000125523	-3.5162266	down	--	--	--	K09422|7e-21|osa:4330397|Os02g0695200	Myb-related protein Zm1 OS=Zea mays (Maize) PE=2 SV=1	Uncharacterized protein GN=Si017704m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb-related protein Zm1-like [Setaria italica]
comp130627_c0	8.19E-11	-3.81526678	down	--	--	--	--	--	--	--
comp129747_c0	9.04E-07	2.709717448	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101753548 [Setaria italica]
comp234271_c1	0	4.689757937	up	[P]	Inorganic ion transport and metabolism 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: DNA metabolic process (GO:0006259);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Biological Process: heterocycle biosynthetic process (GO:0018130);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: nitrate assimilation (GO:0042128);; Biological Process: cellular nitrogen compound biosynthetic process (GO:0044271);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: ferredoxin-nitrate reductase activity (GO:0047889);; Cellular Component: apoplast (GO:0048046);; Molecular Function: ferredoxin-nitrite reductase activity (GO:0048307);; Molecular Function: nitrite reductase (NO-forming) activity (GO:0050421);; Biological Process: regulation of cellular process (GO:0050794);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; "	K00366|0.0|sbi:SORBI_04g034160|hypothetical protein	Ferredoxin--nitrite reductase, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si016715m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ferredoxin--nitrite reductase, chloroplastic-like [Setaria italica]
comp200881_c2	0.003393623	-2.853501552	down	--	--	"Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: cell growth (GO:0016049);; Biological Process: methylation (GO:0032259);; Biological Process: cellular component morphogenesis (GO:0032989);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: cell wall organization (GO:0071555);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; "	--	Probable methyltransferase PMT23 GN=At2g40280 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb3268s002010 (Fragment) GN=Sb3268s002010 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: probable methyltransferase PMT23-like [Setaria italica]
comp221539_c0	3.44E-05	2.342017645	up	[P]	Inorganic ion transport and metabolism 	"Molecular Function: carbonate dehydratase activity (GO:0004089);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: carbon utilization (GO:0015976);; "	K01673|1e-113|zma:100281456|carbonic anhydrase (EC:4.2.1.1)	Carbonic anhydrase, chloroplastic (Precursor) OS=Hordeum vulgare (Barley) PE=2 SV=1	Uncharacterized protein GN=Si003882m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	carbonic anhydrase 1 [Urochloa panicoides]
comp224151_c0	7.27E-06	2.515727097	up	[C]	Energy production and conversion 	"Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: actin filament organization (GO:0007015);; Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: glycerol-3-phosphate catabolic process (GO:0046168);; Biological Process: regulation of cellular process (GO:0050794);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si021974m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic-like [Setaria italica]
comp208613_c0	2.95E-05	2.340823996	up	--	--	--	--	--	Uncharacterized protein GN=Si018763m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101761145 [Setaria italica]
comp230832_c3	1.04E-07	2.892691543	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: signal transduction (GO:0007165);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: cellular process (GO:0009987);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; "	--	Probable WRKY transcription factor 30 GN=WRKY30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si008812m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101764723 [Setaria italica]
comp226229_c0	0.000231237	2.216208728	up	--	--	"Biological Process: regulation of biosynthetic process (GO:0009889);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: regulation of primary metabolic process (GO:0080090);; "	--	Transcription factor bHLH112 GN=T13M11.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si010139m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor bHLH112-like [Setaria italica]
comp163963_c0	0.006876025	-1.803233911	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: hydrolase activity (GO:0016787);; "	--	Patatin-15 (Precursor) OS=Solanum tuberosum (Potato) PE=1 SV=1	Uncharacterized protein GN=Si035795m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: patatin-16-like [Setaria italica]
comp213920_c0	0.001578701	-2.834993933	down	--	--	--	--	--	Uncharacterized protein GN=ZEAMMB73_871955 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_871955 [Zea mays]
comp226707_c0	1.64E-05	-2.698096949	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: organelle organization (GO:0006996);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: regulation of asymmetric cell division (GO:0009786);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: cell surface (GO:0009986);; Biological Process: response to chitin (GO:0010200);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: protein kinase binding (GO:0019901);; Cellular Component: endocytic vesicle (GO:0030139);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: shoot development (GO:0048367);; Biological Process: root cap development (GO:0048829);; "	--	Serine/threonine-protein kinase-like protein CCR4 (Precursor) GN=MCA23.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp206914_c0	0.003317515	1.846288644	up	--	--	"Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: pyruvate kinase activity (GO:0004743);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: potassium ion binding (GO:0030955);; Biological Process: response to cadmium ion (GO:0046686);; "	K00873|3e-28|zma:100282820|umc2053	--	Uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	unknown [Zea mays]
comp217499_c0	0.001028052	-2.044796715	down	[J]	Translation, ribosomal structure and biogenesis 	"Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: exine (GO:0043668);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	BURP domain-containing protein 3 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si022703m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: BURP domain-containing protein 13-like [Setaria italica]
comp225579_c0	1.46E-07	-3.345666212	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: post-embryonic development (GO:0009791);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: reproductive structure development (GO:0048608);; "	--	Late embryogenesis abundant protein 1 GN=LEA1 OS=Oryza sativa subsp. indica (Rice) PE=1 SV=2	Uncharacterized protein GN=ZEAMMB73_579239 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: late embryogenesis abundant protein 1-like isoform X1 [Setaria italica]
comp215643_c0	4.25E-06	-2.920068142	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: membrane (GO:0016020);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si014495m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g004250 [Sorghum bicolor] 
comp228487_c1	0.000708581	2.094591134	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: defense response to fungus (GO:0050832);; "	--	Ethylene-responsive transcription factor ERF038 GN=ERF038 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein (Fragment) GN=Si012254m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor ERF035-like [Setaria italica]
comp221238_c1	0.003393623	-2.853501552	down	--	--	"Cellular Component: plastid (GO:0009536);; Biological Process: post-embryonic development (GO:0009791);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: reproductive structure development (GO:0048608);; "	--	Pentatricopeptide repeat-containing protein At5g65560 GN=At5g65560 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si015139m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Setaria italica]
comp219085_c1	0.000212771	2.18546659	up	--	--	--	--	--	Putative uncharacterized protein Sb04g016540 GN=Sb04g016540 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g016540 [Sorghum bicolor] 
comp202939_c0	0.000325111	2.489353718	up	--	--	--	--	Formin-like protein 14 GN=FH14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3	Uncharacterized protein GN=Si033607m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101767265 [Setaria italica]
comp229501_c0	0.000135037	-2.285136838	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si000604m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101783535 isoform X2 [Setaria italica]
comp130469_c0	0.000356394	-2.72406316	down	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; "	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100382317 [Zea mays] 
comp218199_c0	2.18E-05	2.369160542	up	--	--	"Biological Process: response to stress (GO:0006950);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si030652m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769282 [Setaria italica]
comp223762_c0	0.003756038	1.97292717	up	--	--	"Molecular Function: peptidase inhibitor activity (GO:0030414);; "	--	Bowman-Birk type trypsin inhibitor OS=Triticum aestivum (Wheat) PE=1 SV=1	Uncharacterized protein GN=Si027044m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: Bowman-Birk type trypsin inhibitor-like [Setaria italica] 
comp224361_c2	0.000131753	2.226501975	up	[V]	Defense mechanisms 	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar lumen (GO:0005775);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: vacuolar transport (GO:0007034);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: external side of plasma membrane (GO:0009897);; Biological Process: wax biosynthetic process (GO:0010025);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: transpiration (GO:0010148);; Molecular Function: fatty acid transporter activity (GO:0015245);; Biological Process: fatty acid transport (GO:0015908);; Cellular Component: membrane (GO:0016020);; Molecular Function: ATPase activity (GO:0016887);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: cutin transport (GO:0080051);; Biological Process: abscisic acid transport (GO:0080168);; Biological Process: petal epidermis patterning (GO:0080172);; "	--	ABC transporter G family member 15 GN=MSA6.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si029062m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: ABC transporter G family member 11-like [Setaria italica]
comp223979_c6	0.000275895	-2.347551629	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: cell wall (GO:0005618);; Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: pollen germination (GO:0009846);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: xylem development (GO:0010089);; Biological Process: positive regulation of abscisic acid biosynthetic process (GO:0010116);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Cellular Component: integral to Golgi membrane (GO:0030173);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: mannan synthase activity (GO:0051753);; Biological Process: cell wall thickening (GO:0052386);; "	--	Cellulose synthase-like protein D4 GN=OsJ_035046 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp247598_c0	6.38E-05	2.852675695	up	--	--	--	--	--	--	--
comp227379_c0	1.76E-08	3.954510665	up	--	--	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: iron ion transport (GO:0006826);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: cellular process (GO:0009987);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to iron ion (GO:0010039);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: photosynthesis (GO:0015979);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: response to hydrogen peroxide (GO:0042542);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: leaf development (GO:0048366);; Biological Process: shoot development (GO:0048367);; Biological Process: ovule development (GO:0048481);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: iron ion homeostasis (GO:0055072);; "	K00522|2e-86|zma:100382986|hypothetical protein LOC100382986	Ferritin-3, chloroplastic (Precursor) OS=Glycine max (Soybean) PE=2 SV=1	Ferritin OS=Zea mays (Maize) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp220723_c1	0.006133771	-3.665591194	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: regulation of translation (GO:0006417);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: negative regulation of cell proliferation (GO:0008285);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to bacterium (GO:0009617);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: mRNA modification (GO:0016556);; Biological Process: cell differentiation (GO:0030154);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: positive regulation of development, heterochronic (GO:0045962);; Biological Process: determination of dorsal/ventral asymmetry (GO:0048262);; Biological Process: ovule development (GO:0048481);; "	--	Transcription factor PCF5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein (Fragment) GN=Si004564m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor PCF5-like [Setaria italica]
comp225192_c1	0.003767729	-2.30690653	down	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: lipid storage (GO:0019915);; Biological Process: response to freezing (GO:0050826);; "	--	C2 and GRAM domain-containing protein At1g03370 GN=At1g03370 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4	Putative uncharacterized protein Sb03g026320 GN=Sb03g026320 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g026320 [Sorghum bicolor] 
comp197176_c0	1.80E-05	-4.540162533	down	--	--	--	--	--	--	--
comp130587_c0	3.94E-05	-2.409285748	down	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to gravity (GO:0009629);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: chalcone biosynthetic process (GO:0009715);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: naringenin-chalcone synthase activity (GO:0016210);; Biological Process: regulation of anthocyanin biosynthetic process (GO:0031540);; "	K00660|0.0|osa:4350636|Os11g0530600	Chalcone synthase 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si026463m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: chalcone synthase C2-like [Setaria italica]
comp216154_c0	0.006382383	-1.81672403	down	--	--	"Molecular Function: transporter activity (GO:0005215);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transport (GO:0006810);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	--	Patellin-4 GN=PATL4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si006235m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: patellin-4-like [Setaria italica]
comp230579_c0	0.004302683	2.096159003	up	--	--	--	--	--	Uncharacterized protein GN=Si034859m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784454 isoform X1 [Setaria italica] 
comp197356_c0	0.008669054	-1.778446984	down	[MG]	--	"Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: catalytic activity (GO:0003824);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: tRNA modification (GO:0006400);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: lipid biosynthetic process (GO:0008610);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to metal ion (GO:0010038);; Cellular Component: membrane (GO:0016020);; Biological Process: carotenoid metabolic process (GO:0016116);; Molecular Function: kinase activity (GO:0016301);; Biological Process: cytoplasmic transport (GO:0016482);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: histone methylation (GO:0016571);; Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: regulation of programmed cell death (GO:0043067);; Molecular Function: structure-specific DNA binding (GO:0043566);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: innate immune response (GO:0045087);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: seed development (GO:0048316);; Biological Process: leaf development (GO:0048366);; Biological Process: floral organ development (GO:0048437);; Biological Process: floral whorl development (GO:0048438);; Biological Process: negative regulation of biological process (GO:0048519);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: cellular response to stimulus (GO:0051716);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: organic substance transport (GO:0071702);; Cellular Component: cell periphery (GO:0071944);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; Biological Process: 5-carbamoylmethyluridine metabolic process (GO:0080178);; "	--	Anthocyanidin reductase GN=T13M11.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Leucoanthocyanidin reductase OS=Zea mays (Maize) PE=2 SV=1	leucoanthocyanidin reductase [Zea mays]
comp224274_c0	0.004096545	2.165046965	up	--	--	--	--	--	--	--
comp233029_c0	0.000101329	2.327730577	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: xylem development (GO:0010089);; Biological Process: response to chitin (GO:0010200);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Molecular Function: xyloglucan-specific endo-beta-1,4-glucanase activity (GO:0033946);; Biological Process: cell wall modification (GO:0042545);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: primary root development (GO:0080022);; Molecular Function: xyloglucan endotransglucosylase activity (GO:0080039);; "	--	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor) GN=F14M19.90 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si010796m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like [Setaria italica]
comp334938_c0	0	7.171324306	up	--	--	--	--	--	Putative uncharacterized protein GN=VOLCADRAFT_121342 OS=Volvox carteri (Green alga) PE=4 SV=1	Epa5p [Candida glabrata]
comp228127_c0	0.006582542	-1.852172142	down	[R]	General function prediction only 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: protein binding (GO:0005515);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: asymmetric cell division (GO:0008356);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to blue light (GO:0009637);; Biological Process: photomorphogenesis (GO:0009640);; Molecular Function: auxin:hydrogen symporter activity (GO:0009672);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: determination of bilateral symmetry (GO:0009855);; Cellular Component: auxin efflux carrier complex (GO:0009921);; Cellular Component: basal plasma membrane (GO:0009925);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: cell surface (GO:0009986);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: regulation of root meristem growth (GO:0010082);; Biological Process: xylem development (GO:0010089);; Biological Process: response to far red light (GO:0010218);; Biological Process: inflorescence development (GO:0010229);; Biological Process: auxin homeostasis (GO:0010252);; Biological Process: auxin efflux (GO:0010315);; Biological Process: leaf formation (GO:0010338);; Biological Process: leaf shaping (GO:0010358);; Cellular Component: vesicle membrane (GO:0012506);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: lateral plasma membrane (GO:0016328);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Cellular Component: apical part of cell (GO:0045177);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: stamen development (GO:0048443);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: root hair initiation (GO:0048766);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cotyledon morphogenesis (GO:0048826);; Biological Process: adventitious root development (GO:0048830);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: cell wall organization (GO:0071555);; Molecular Function: auxin transmembrane transporter activity (GO:0080161);; Biological Process: intracellular auxin transport (GO:0080162);; "	K13947|0.0|zma:100273056|hypothetical protein LOC100273056	Probable auxin efflux carrier component 4 GN=OJ1770_H02.15 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si032859m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable auxin efflux carrier component 4-like [Setaria italica]
comp207602_c0	0.009561132	1.756382744	up	--	--	--	--	--	--	--
comp207226_c0	0.000123661	2.200874809	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si007471m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g008920 [Sorghum bicolor] 
comp192860_c1	0	6.768415754	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (Precursor) GN=At1g24360 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_70714 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	polyketide synthase [Fusarium verticillioides]
comp218838_c0	0.000905733	2.100182506	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein Sb02g029816 (Fragment) GN=Sb02g029816 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g029816 [Sorghum bicolor] 
comp226638_c0	0.007473432	2.199338809	up	--	--	--	--	--	--	--
comp206309_c0	0	7.527973136	up	--	--	--	--	Classical arabinogalactan protein 9 (Precursor) GN=AGP9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=PRUPE_ppa002001mg OS=Prunus persica (Peach) PE=4 SV=1	hypothetical protein PRUPE_ppa002001mg [Prunus persica]
comp207665_c0	1.17E-07	4.914473374	up	--	--	"Biological Process: amino acid transport (GO:0006865);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to UV-B (GO:0010224);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: trans-zeatin O-beta-D-glucosyltransferase activity (GO:0050403);; Molecular Function: cis-zeatin O-beta-D-glucosyltransferase activity (GO:0050502);; Biological Process: flavonol biosynthetic process (GO:0051555);; Biological Process: response to other organism (GO:0051707);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; "	--	UDP-glycosyltransferase 73D1 GN=UGT73D1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g005380 [Sorghum bicolor] 
comp229423_c2	9.00E-07	-3.28144734	down	--	--	"Cellular Component: membrane (GO:0016020);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si022579m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755659 [Setaria italica]
comp201926_c0	2.66E-05	-2.94891614	down	--	--	"Biological Process: defense response to insect (GO:0002213);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: extracellular region (GO:0005576);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: pentose-phosphate shunt (GO:0006098);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: cellular process (GO:0009987);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: regulation of biological process (GO:0050789);; Cellular Component: cell periphery (GO:0071944);; "	--	Sulfated surface glycoprotein 185 (Precursor) OS=Volvox carteri (Green alga) PE=1 SV=1	Putative uncharacterized protein Sb04g037030 GN=Sb04g037030 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765875 [Setaria italica]
comp229589_c0	0.000201747	2.148425578	up	--	--	"Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: integral to membrane (GO:0016021);; "	--	--	Putative uncharacterized protein Sb01g034860 GN=Sb01g034860 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g034860 [Sorghum bicolor] 
comp216029_c0	0.000296324	-2.282272096	down	--	--	"Cellular Component: membrane (GO:0016020);; "	--	Formin-like protein 7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si011990m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784245 [Setaria italica]
comp130362_c0	0.001535539	-2.117693884	down	--	--	--	--	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare] 
comp231203_c0	0.002836168	1.857365882	up	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_70670 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70670, partial [Aureococcus anophagefferens]
comp214237_c0	3.50E-12	4.132791903	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Dehydration-responsive element-binding protein 1J OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Dehydration-responsive element-binding protein 1B OS=Zea mays (Maize) PE=2 SV=1	dehydration-responsive element-binding protein 1B [Zea mays] 
comp161637_c0	0.001790576	2.01098054	up	--	--	--	--	--	Uncharacterized protein GN=Si000209m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Setaria italica]
comp207037_c0	0.000777068	-2.492382113	down	--	--	"Molecular Function: carboxylesterase activity (GO:0004091);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: amino acid transport (GO:0006865);; Biological Process: defense response (GO:0006952);; Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: gibberellin mediated signaling pathway (GO:0010476);; Biological Process: response to organic cyclic compound (GO:0014070);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: system development (GO:0048731);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Probable carboxylesterase 18 GN=CXE18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si032705m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable carboxylesterase 18-like [Setaria italica]
comp239424_c0	8.97E-05	2.261503836	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	hypothetical protein OsI_18699 [Oryza sativa Indica Group]
comp217348_c1	0.0003431	2.111626591	up	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: receptor-mediated endocytosis (GO:0006898);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: gibberellin catabolic process (GO:0045487);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634);; Molecular Function: C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Gibberellin 2-beta-dioxygenase 1 GN=GA2OX1 OS=Pisum sativum (Garden pea) PE=1 SV=1	Uncharacterized protein GN=Si002030m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: gibberellin 2-beta-dioxygenase 1-like [Setaria italica]
comp200537_c0	5.29E-08	3.346452197	up	--	--	"Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Basic blue protein (Precursor) GN=ARPN OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb01g010520 GN=Sb01g010520 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g010520 [Sorghum bicolor] 
comp209678_c0	5.06E-05	2.760100381	up	--	--	"Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: binding (GO:0005488);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to stress (GO:0006950);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: apoplast (GO:0048046);; "	--	Peroxidase (Precursor) OS=Triticum aestivum (Wheat) PE=2 SV=1	Uncharacterized protein GN=BRADI3G09100 OS=Brachypodium distachyon (Purple false brome) PE=3 SV=1	PREDICTED: peroxidase 52-like [Brachypodium distachyon]
comp234347_c0	0.000478974	2.18637576	up	[L]	Replication, recombination and repair 	"Molecular Function: RNA binding (GO:0003723);; Cellular Component: extracellular region (GO:0005576);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: transport (GO:0006810);; Biological Process: defense response (GO:0006952);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: organelle organization (GO:0006996);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: lipid biosynthetic process (GO:0008610);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: plastid (GO:0009536);; Biological Process: response to metal ion (GO:0010038);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: structure-specific DNA binding (GO:0043566);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: regulation of biological process (GO:0050789);; "	K01669|5e-71|cme:CMA044C|cryptochrome DASH	Cryptochrome DASH, chloroplastic/mitochondrial (Precursor) GN=Ot01g06320 OS=Ostreococcus tauri PE=3 SV=1	Cryptochrome GN=COCSUDRAFT_55876 OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1	"RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags: Precursor "
comp205714_c0	0.000403181	2.079479394	up	--	--	"Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: cell part (GO:0044464);; Biological Process: organelle localization (GO:0051640);; "	K13448|8e-37|zma:100280890|grancalcin	Probable calcium-binding protein CML50 GN=CML50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Grancalcin GN=ZEAMMB73_778929 OS=Zea mays (Maize) PE=4 SV=1	grancalcin [Zea mays]
comp229888_c0	0.000489705	2.082782214	up	[R]	General function prediction only 	"Molecular Function: protein binding (GO:0005515);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: blue light signaling pathway (GO:0009785);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; "	--	Pirin-like protein At2g43120 GN=At2g43120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein GN=Si013691m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: pirin-like protein-like [Setaria italica]
comp203444_c0	0.006880554	2.299451357	up	--	--	--	--	--	--	--
comp222551_c0	0.004943576	2.64753377	up	--	--	"Cellular Component: cell part (GO:0044464);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	75k gamma secalin GN=sec2 OS=Secale strictum subsp. africanum PE=4 SV=1	75k gamma secalin [Secale strictum subsp. africanum] 
comp181385_c0	0.000127576	-4.275722224	down	--	--	"Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Molecular Function: phospholipase A2 activity (GO:0004623);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytosol (GO:0005829);; Biological Process: glycolysis (GO:0006096);; Biological Process: proteolysis (GO:0006508);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: peptidase activity (GO:0008233);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to salt stress (GO:0009651);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: developmental programmed cell death (GO:0010623);; Biological Process: chlorophyll catabolic process (GO:0015996);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Cellular Component: nuclear part (GO:0044428);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: defense response to fungus (GO:0050832);; "	--	Thiol protease SEN102 (Precursor) GN=SEN102 OS=Hemerocallis sp. (Daylily) PE=2 SV=1	Cysteine proteinase OS=Oxyrrhis marina (Dinoflagellate) PE=2 SV=1	cysteine proteinase [Oxyrrhis marina]
comp217952_c0	3.79E-10	3.31154367	up	--	--	--	--	--	Uncharacterized protein GN=Si038192m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762825 [Setaria italica]
comp210137_c0	0.000133585	2.207315207	up	[T]	Signal transduction mechanisms 	"Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: epidermis development (GO:0008544);; Cellular Component: plastid (GO:0009536);; Biological Process: post-embryonic development (GO:0009791);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: interspecies interaction between organisms (GO:0044419);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: cellular developmental process (GO:0048869);; "	--	Probable protein phosphatase 2C 33 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si035800m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable protein phosphatase 2C 33-like isoform X1 [Setaria italica]
comp199531_c0	0.001098095	2.125042915	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: binding (GO:0005488);; Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular organelle (GO:0043229);; "	--	Formin-like protein 6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein GN=AURANDRAFT_70520 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_784009, partial [Zea mays]
comp208206_c2	0.000807145	2.906550914	up	--	--	"Cellular Component: intracellular part (GO:0044424);; "	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp201172_c0	0.000146364	3.126066998	up	--	--	--	--	--	--	--
comp214690_c1	0.002855724	1.864849746	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: extracellular region (GO:0005576);; Molecular Function: L-ascorbate oxidase activity (GO:0008447);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to copper ion (GO:0046688);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	L-ascorbate oxidase OS=Cucurbita pepo var. melopepo (Zucchini) PE=1 SV=1	Putative uncharacterized protein Sb03g001450 GN=Sb03g001450 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g001450 [Sorghum bicolor] 
comp216972_c0	5.18E-05	2.417075823	up	--	--	"Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: response to stress (GO:0006950);; Biological Process: response to UV (GO:0009411);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Cellular Component: oxygen evolving complex (GO:0009654);; Biological Process: plastid organization (GO:0009657);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: detection of bacterium (GO:0016045);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Cellular Component: chloroplast photosystem II (GO:0030095);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Molecular Function: flavonol synthase activity (GO:0045431);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	--	PsbP-like protein 1, chloroplastic (Precursor) GN=PPL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036512m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: flavanone 3-dioxygenase-like [Setaria italica]
comp226962_c1	0.002363769	-3.366032158	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleoplasm (GO:0005654);; Biological Process: actin filament organization (GO:0007015);; Biological Process: RNA splicing (GO:0008380);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular non-membrane-bounded organelle (GO:0043232);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to stimulus (GO:0050896);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si016641m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: plastidic ATP/ADP-transporter-like [Setaria italica]
comp133365_c0	3.35E-08	4.613660338	up	--	--	--	--	--	Uncharacterized protein GN=Si026479m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein MTR_2g084760, partial [Medicago truncatula] 
comp152112_c0	0.002495611	-2.512377994	down	--	--	--	--	--	Uncharacterized protein GN=Si007003m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784573 [Setaria italica]
comp187265_c1	9.19E-05	3.745636864	up	--	--	--	--	--	--	--
comp210908_c0	0.009638139	1.759203214	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: defense response (GO:0006952);; Biological Process: macromolecule catabolic process (GO:0009057);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xylan catabolic process (GO:0045493);; "	--	Xylanase inhibitor protein 1 (Precursor) GN=XIPI OS=Triticum aestivum (Wheat) PE=1 SV=2	cDNA, clone: J075005N23, full insert sequence GN=Os06g0356800 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os06g0356800 [Oryza sativa Japonica Group] 
comp216258_c0	9.29E-08	4.245967341	up	--	--	"Biological Process: lipid metabolic process (GO:0006629);; Biological Process: defense response (GO:0006952);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Biological Process: response to wounding (GO:0009611);; Biological Process: methylation (GO:0032259);; Cellular Component: intracellular part (GO:0044424);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: response to other organism (GO:0051707);; Molecular Function: 2-phytyl-1,4-naphthoquinone methyltransferase activity (GO:0052624);; Biological Process: monocarboxylic acid biosynthetic process (GO:0072330);; Molecular Function: S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity (GO:0080150);; "	--	Salicylate O-methyltransferase GN=SAMT OS=Clarkia breweri (Fairy fans) PE=1 SV=1	Uncharacterized protein GN=Si006642m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: salicylate O-methyltransferase-like [Setaria italica]
comp131000_c0	0.001027393	-2.207861823	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Cellular Component: anchored to membrane (GO:0031225);; "	--	Arabinogalactan peptide 16 (Precursor) GN=AGP16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g007150 GN=Sb09g007150 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g007150 [Sorghum bicolor] 
comp232956_c0	0.000565549	2.107364972	up	--	--	"Molecular Function: catalytic activity (GO:0003824);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: metabolic process (GO:0008152);; Molecular Function: galactosyltransferase activity (GO:0008378);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Biological Process: mannitol biosynthetic process (GO:0019593);; "	--	Probable galactinol--sucrose galactosyltransferase 2 GN=T8H10.120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si009328m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like isoform X2 [Setaria italica]
comp220964_c0	2.66E-07	2.930840539	up	--	--	--	--	--	--	--
comp216567_c0	0.007836816	-3.16530996	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: nucleus (GO:0005634);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: glutathione metabolic process (GO:0006749);; Biological Process: defense response (GO:0006952);; Biological Process: toxin catabolic process (GO:0009407);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to biotic stimulus (GO:0009607);; Biological Process: response to salt stress (GO:0009651);; Biological Process: de-etiolation (GO:0009704);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: PSII associated light-harvesting complex II catabolic process (GO:0010304);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: proline transport (GO:0015824);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Molecular Function: glutathione binding (GO:0043295);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: lateral root development (GO:0048527);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: response to growth hormone stimulus (GO:0060416);; Biological Process: proteasome core complex assembly (GO:0080129);; Biological Process: negative regulation of response to water deprivation (GO:0080148);; Biological Process: response to karrikin (GO:0080167);; "	--	Probable glutathione S-transferase GN=PRP1 OS=Solanum tuberosum (Potato) PE=2 SV=1	Uncharacterized protein GN=Si002820m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable glutathione S-transferase-like [Setaria italica]
comp132219_c0	0.008518053	-2.117692339	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: defense response to fungus (GO:0050832);; "	K14431|1e-53|sbi:SORBI_08g003260|hypothetical protein	Transcription factor TGA6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si026421m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor HBP-1b(c1)-like isoform X2 [Setaria italica]
comp231999_c2	1.18E-06	-2.844199793	down	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glucose metabolic process (GO:0006006);; Biological Process: RNA processing (GO:0006396);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: lipid metabolic process (GO:0006629);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: organelle organization (GO:0006996);; Biological Process: cell cycle (GO:0007049);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: pollen development (GO:0009555);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: programmed cell death (GO:0012501);; Cellular Component: membrane (GO:0016020);; Biological Process: developmental maturation (GO:0021700);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: growth (GO:0040007);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: innate immune response (GO:0045087);; Biological Process: intracellular transport (GO:0046907);; Biological Process: root development (GO:0048364);; Biological Process: leaf development (GO:0048366);; Biological Process: floral whorl development (GO:0048438);; Biological Process: meristem development (GO:0048507);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: cell division (GO:0051301);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to lipid (GO:0071396);; Biological Process: cellular response to organic cyclic compound (GO:0071407);; Biological Process: cellular response to alcohol (GO:0097306);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Serine/threonine-protein kinase-like protein CCR4 (Precursor) GN=MCA23.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative CRINKLY4-like receptor protein kinase family protein GN=ZEAMMB73_168581 OS=Zea mays (Maize) PE=3 SV=1	putative CRINKLY4-like receptor protein kinase family protein [Zea mays]
comp225157_c0	0.008577313	2.464450912	up	--	--	--	--	--	--	--
comp207315_c0	0.005024896	-2.972862742	down	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: inorganic anion transport (GO:0015698);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: heme binding (GO:0020037);; Biological Process: cellular response to stress (GO:0033554);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: respiratory burst (GO:0045730);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: developmental growth (GO:0048589);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to chemical stimulus (GO:0070887);; "	--	Peroxidase 57 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036621m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: peroxidase 57-like [Setaria italica]
comp228097_c0	5.69E-05	-2.757436134	down	[RTKL]	--	"Biological Process: reproduction (GO:0000003);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: tissue development (GO:0009888);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; Biological Process: cell cycle process (GO:0022402);; Biological Process: regulation of defense response (GO:0031347);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: innate immune response (GO:0045087);; Biological Process: organ development (GO:0048513);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to organic cyclic compound (GO:0071407);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	Probable protein phosphatase 2C 31 GN=At2g40860/At2g40870 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=CARUB_v10016601mg OS=Capsella rubella PE=4 SV=1	hypothetical protein CARUB_v10016601mg [Capsella rubella]
comp223156_c0	0.002397751	1.897719983	up	--	--	--	--	--	Uncharacterized protein GN=Si011201m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101767531 [Setaria italica]
comp213623_c0	0.006133771	-3.665591194	down	--	--	--	--	--	Predicted protein GN=MICPUCDRAFT_50699 OS=Micromonas pusilla (strain CCMP1545) PE=4 SV=1	--
comp168016_c0	5.39E-06	-3.910006161	down	--	--	--	K00681|1e-15|sbi:SORBI_03g006000|hypothetical protein	--	Putative uncharacterized protein Sb03g006000 GN=Sb03g006000 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g006000 [Sorghum bicolor] 
comp130992_c0	0.003697156	-2.706085961	down	--	--	"Molecular Function: L-ornithine transmembrane transporter activity (GO:0000064);; Molecular Function: L-histidine transmembrane transporter activity (GO:0005290);; Molecular Function: carnitine:acyl carnitine antiporter activity (GO:0005476);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: proline biosynthetic process (GO:0006561);; Biological Process: mitochondrial transport (GO:0006839);; Biological Process: hyperosmotic response (GO:0006972);; Molecular Function: arginine transmembrane transporter activity (GO:0015181);; Molecular Function: L-lysine transmembrane transporter activity (GO:0015189);; Biological Process: histidine transport (GO:0015817);; Biological Process: lysine transport (GO:0015819);; Biological Process: ornithine transport (GO:0015822);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: L-arginine import (GO:0043091);; Biological Process: transmembrane transport (GO:0055085);; "	K03454|3e-22|osa:4326735|Os01g0225000	Mitochondrial arginine transporter BAC2 GN=BAC2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si002259m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: mitochondrial arginine transporter BAC2-like [Setaria italica]
comp206446_c1	1.19E-05	3.73658607	up	--	--	"Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	--	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	putative polyprotein [Zea mays]
comp129982_c1	0.006568855	1.855612736	up	--	--	--	--	--	Uncharacterized protein GN=Si027148m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762935 [Setaria italica]
comp227827_c0	0.003582995	-1.889045559	down	--	--	"Biological Process: defense response to insect (GO:0002213);; Molecular Function: chitinase activity (GO:0004568);; Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cell part (GO:0044464);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	Glycine-rich cell wall structural protein 1.0 (Precursor) OS=Phaseolus vulgaris (Kidney bean) PE=2 SV=1	Putative uncharacterized protein Sb09g017180 GN=Sb09g017180 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: glycine-rich cell wall structural protein 1-like [Setaria italica]
comp229208_c0	0.003901025	-1.897714677	down	--	--	--	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035995m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769052 [Setaria italica]
comp218755_c0	0.007076283	-1.863329139	down	[I]	Lipid transport and metabolism 	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: metabolic process (GO:0008152);; Biological Process: tetracyclic triterpenoid biosynthetic process (GO:0010686);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: intramolecular transferase activity (GO:0016866);; Molecular Function: cycloartenol synthase activity (GO:0016871);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; Molecular Function: cucurbitadienol synthase activity (GO:0034076);; Molecular Function: beta-amyrin synthase activity (GO:0042300);; "	--	Achilleol B synthase OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=BRADI1G42000 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: cycloartenol synthase-like isoform 1 [Brachypodium distachyon]
comp212761_c0	3.97E-08	-3.882005234	down	--	--	"Molecular Function: inorganic diphosphatase activity (GO:0004427);; Biological Process: metabolic process (GO:0008152);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Cellular Component: cell part (GO:0044464);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: protein tetramerization (GO:0051262);; Molecular Function: phosphocholine phosphatase activity (GO:0052731);; Molecular Function: phosphoethanolamine phosphatase activity (GO:0052732);; "	--	Inorganic pyrophosphatase 1 GN=PS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si017919m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: inorganic pyrophosphatase 1-like [Setaria italica]
comp213427_c0	1.99E-09	4.263403628	up	[K]	Transcription 	"Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein GN=AURANDRAFT_70520 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70520 [Aureococcus anophagefferens]
comp229395_c0	0.007534391	-1.833089116	down	--	--	"Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Biological Process: cell morphogenesis involved in differentiation (GO:0000904);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Biological Process: regionalization (GO:0003002);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Cellular Component: microtubule associated complex (GO:0005875);; Cellular Component: cilium (GO:0005929);; Biological Process: DNA replication (GO:0006260);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: microtubule-based movement (GO:0007018);; Biological Process: chromosome segregation (GO:0007059);; Biological Process: meiosis I (GO:0007127);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: cytoskeletal protein binding (GO:0008092);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: pollen development (GO:0009555);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: cellulose microfibril organization (GO:0010215);; Biological Process: histone modification (GO:0016570);; Biological Process: cell projection organization (GO:0030030);; Biological Process: actin cytoskeleton organization (GO:0030036);; Biological Process: cytokinetic process (GO:0032506);; Biological Process: regulation of organelle organization (GO:0033043);; Biological Process: small molecule metabolic process (GO:0044281);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: floral whorl development (GO:0048438);; Biological Process: floral organ formation (GO:0048449);; Biological Process: phyllome development (GO:0048827);; Biological Process: spindle assembly (GO:0051225);; Biological Process: cellular response to stimulus (GO:0051716);; Biological Process: regulation of biological quality (GO:0065008);; "	K10395|0.0|sbi:SORBI_02g013180|hypothetical protein	Kinesin-like protein FLA10 GN=FLA10 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=1 SV=1	Uncharacterized protein GN=Si028795m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: chromosome-associated kinesin KIF4A-like isoform X1 [Setaria italica]
comp231390_c0	0.008152603	1.833915338	up	[D]	Cell cycle control, cell division, chromosome partitioning 	"Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si032833m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101752506 [Setaria italica]
comp213716_c0	3.43E-11	4.605223074	up	--	--	--	--	--	Putative uncharacterized protein P0676G05.18 GN=P0676G05.18 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=2	hypothetical protein [Oryza sativa Japonica Group]
comp228487_c0	1.64E-06	2.670581428	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to stress (GO:0006950);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to salt stress (GO:0009651);; Biological Process: regulation of gibberellin biosynthetic process (GO:0010371);; Biological Process: cell growth (GO:0016049);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of timing of transition from vegetative to reproductive phase (GO:0048510);; Biological Process: response to freezing (GO:0050826);; "	--	Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si007199m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: dehydration-responsive element-binding protein 1C-like [Setaria italica]
comp173209_c0	0.000686869	-2.129576481	down	--	--	"Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: defense response to virus (GO:0051607);; "	--	--	Vamp protein sec22 (Fragment) OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	vamp protein sec22 [Oryza sativa Indica Group]
comp168947_c0	0.000702669	2.158676351	up	--	--	--	--	--	Uncharacterized protein GN=TRIUR3_01140 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784258 [Setaria italica]
comp232404_c1	0.002906185	-1.941313038	down	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: phosphorus metabolic process (GO:0006793);; Biological Process: signal transduction (GO:0007165);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to fungus (GO:0009620);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: gene expression (GO:0010467);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: response to lipid (GO:0033993);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: cellular protein metabolic process (GO:0044267);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: alcohol biosynthetic process (GO:0046165);; Biological Process: shoot development (GO:0048367);; Biological Process: regulation of developmental growth (GO:0048638);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of multicellular organismal process (GO:0051239);; Biological Process: nucleic acid metabolic process (GO:0090304);; Biological Process: response to alcohol (GO:0097305);; "	--	Probable inactive receptor kinase At2g26730 (Precursor) GN=At2g26730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si000538m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable inactive receptor kinase At2g26730-like [Setaria italica]
comp125356_c0	0.000594085	3.496355273	up	--	--	"Cellular Component: cell part (GO:0044464);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein GN=VOLCADRAFT_87706 OS=Volvox carteri (Green alga) PE=4 SV=1	hypothetical protein VOLCADRAFT_87706 [Volvox carteri f. nagariensis] 
comp192353_c0	0.004812602	2.553235536	up	--	--	--	K12627|4e-08|zma:100284021|AY110400	--	Uncharacterized protein GN=BRADI2G14260 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit-like [Brachypodium distachyon]
comp229322_c1	0.000982147	-2.060745045	down	--	--	"Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process (GO:0000036);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: plastid (GO:0009536);; Molecular Function: acyl-[acyl-carrier-protein] hydrolase activity (GO:0016297);; "	--	Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor) GN=T27G7.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si003998m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like isoform X1 [Setaria italica] 
comp180676_c0	1.61E-10	4.478041172	up	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_71291 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_71291, partial [Aureococcus anophagefferens]
comp134878_c0	0.003365056	2.999824431	up	--	--	"Molecular Function: catalase activity (GO:0004096);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein At1g44191.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	CATB protein [Podospora anserina]
comp210693_c1	2.06E-07	3.725335156	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: oxidoreductase activity (GO:0016491);; "	--	Cytochrome P450 714C3 GN=CYP714C3 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2	Putative uncharacterized protein GN=VIT_18s0001g09650 OS=Vitis vinifera (Grape) PE=3 SV=1	PREDICTED: cytochrome P450 81F1-like [Vitis vinifera]
comp206769_c0	8.01E-06	2.469867462	up	[J]	Translation, ribosomal structure and biogenesis 	--	--	Proline-rich receptor-like protein kinase PERK10 GN=PERK10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si007724m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769343 [Setaria italica]
comp213371_c0	0.009362348	-1.764411833	down	--	--	--	--	--	--	--
comp129920_c0	2.70E-09	-3.401344756	down	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: cytoskeleton organization (GO:0007010);; Biological Process: cell cycle (GO:0007049);; Biological Process: epidermis development (GO:0008544);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: microtubule cytoskeleton (GO:0015630);; Biological Process: regulation of nucleobase-containing compound metabolic process (GO:0019219);; Molecular Function: histone serine kinase activity (GO:0035174);; Biological Process: histone-serine phosphorylation (GO:0035404);; Cellular Component: protein complex (GO:0043234);; Biological Process: macromolecule methylation (GO:0043414);; Cellular Component: cytoskeletal part (GO:0044430);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: cell division (GO:0051301);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: protein modification by small protein conjugation or removal (GO:0070647);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; "	--	Serine/threonine-protein kinase Aurora-1 GN=AUR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si001317m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Setaria italica]
comp227605_c0	0.000240023	-2.218084263	down	[P]	Inorganic ion transport and metabolism 	"Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; "	--	F-box protein At1g67340 GN=At1g67340 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026600m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: F-box protein At1g67340-like isoform X2 [Setaria italica]
comp170787_c0	4.04E-05	-2.571330724	down	--	--	"Molecular Function: fatty acid binding (GO:0005504);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Putative lipid-transfer protein DIR1 (Precursor) GN=DIR1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	cDNA clone:001-108-F06, full insert sequence GN=P0045F02.128 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os07g0287400 [Oryza sativa Japonica Group] 
comp234321_c0	0.000619028	2.082694344	up	[R]	General function prediction only 	"Molecular Function: DNA binding (GO:0003677);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: response to cold (GO:0009409);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: metal ion binding (GO:0046872);; "	--	Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb04g031930 GN=Sb04g031930 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g031930 [Sorghum bicolor] 
comp235529_c0	0.00443066	1.853741113	up	--	--	--	--	--	Uncharacterized protein GN=Si023562m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ocs element-binding factor 1-like [Setaria italica]
comp197425_c0	0.000865874	-2.108272118	down	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si026303m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: baculoviral IAP repeat-containing protein 2-like [Setaria italica]
comp300624_c0	2.67E-13	6.071856968	up	--	--	--	--	--	--	--
comp217420_c0	0.000411346	-2.57599499	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein GN=Si003577m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755031 [Setaria italica]
comp211536_c0	0.000283869	3.349657084	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein GN=Si031595m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g005745 [Sorghum bicolor] 
comp231427_c2	0.000831107	-2.822032439	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: osmosensory signaling pathway (GO:0007231);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to nitrate (GO:0010167);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: NAD(P)H oxidase activity (GO:0016174);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor (GO:0050664);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Respiratory burst oxidase homolog protein E GN=RBOHE OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb07g022250 GN=Sb07g022250 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g022250 [Sorghum bicolor] 
comp233903_c0	5.54E-07	-3.418801683	down	--	--	--	--	Lysine-rich arabinogalactan protein 19 (Precursor) GN=AGP19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si021965m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101754444 [Setaria italica]
comp217566_c0	0.000326456	2.161101939	up	[E]	Amino acid transport and metabolism 	"Molecular Function: threonine aldolase activity (GO:0004793);; Biological Process: threonine catabolic process (GO:0006567);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; "	K01620|0.0|osa:4336402|Os04g0516600	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: L-allo-threonine aldolase-like [Brachypodium distachyon]
comp205936_c0	2.80E-05	2.602573677	up	--	--	"Biological Process: cellular component organization (GO:0016043);; Biological Process: growth (GO:0040007);; Biological Process: system development (GO:0048731);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of developmental process (GO:0050793);; Biological Process: regulation of cellular process (GO:0050794);; Cellular Component: cell periphery (GO:0071944);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 1 (Precursor) GN=PEX1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Extensin-like protein GN=Pex1 OS=Solanum lycopersicum (Tomato) PE=4 SV=1	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3-like isoform 2 [Solanum lycopersicum]
comp229055_c2	0.000751351	-2.278620965	down	--	--	--	--	--	--	--
comp222268_c0	0.006535548	-2.158451193	down	--	--	--	--	--	--	--
comp124168_c0	0.007384935	2.343783426	up	--	--	--	--	--	--	--
comp217912_c0	0.001952076	3.323086301	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: membrane (GO:0016020);; "	--	--	Uncharacterized protein GN=ZEAMMB73_262736 OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101775852 [Setaria italica]
comp232402_c0	0.004021558	-1.889703229	down	[R]	General function prediction only 	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: spindle (GO:0005819);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: methionine biosynthetic process (GO:0009086);; Cellular Component: phragmoplast (GO:0009524);; Cellular Component: secondary cell wall (GO:0009531);; Cellular Component: plastid (GO:0009536);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: regulation of exocytosis (GO:0017157);; Molecular Function: protein kinase binding (GO:0019901);; Molecular Function: protein phosphatase binding (GO:0019903);; Cellular Component: site of polarized growth (GO:0030427);; Biological Process: regulation of actin filament polymerization (GO:0030833);; Biological Process: regulation of actin filament depolymerization (GO:0030834);; Molecular Function: GTPase activating protein binding (GO:0032794);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Cellular Component: apical part of cell (GO:0045177);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: root hair elongation (GO:0048767);; Biological Process: establishment of vesicle localization (GO:0051650);; "	--	Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si006295m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775938 [Setaria italica]
comp203519_c0	0.000257005	-3.699192784	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Acid phosphatase 1 (Precursor) GN=APS1 OS=Solanum lycopersicum (Tomato) PE=2 SV=1	Stem glycoprotein GN=ZEAMMB73_279889 OS=Zea mays (Maize) PE=4 SV=1	stem glycoprotein [Zea mays]
comp161505_c0	0.003687526	-1.886975766	down	[E]	Amino acid transport and metabolism 	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: transport (GO:0006810);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to organic cyclic compound (GO:0014070);; Cellular Component: membrane (GO:0016020);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: dipeptide transporter activity (GO:0042936);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: response to amino acid stimulus (GO:0043200);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: abscisic acid transport (GO:0080168);; Molecular Function: abscisic acid transporter activity (GO:0090440);; "	--	Probable peptide/nitrate transporter At1g59740 GN=At1g59740 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb08g007710 GN=Sb08g007710 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: probable peptide/nitrate transporter At1g59740-like [Setaria italica]
comp133382_c0	0.001713048	2.448673485	up	--	--	--	--	--	--	--
comp233547_c1	0.002367329	2.01480909	up	--	--	"Molecular Function: triglyceride lipase activity (GO:0004806);; Cellular Component: vacuole (GO:0005773);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: membrane (GO:0016020);; "	--	--	Uncharacterized protein GN=Si006352m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101777571 [Setaria italica]
comp182450_c0	0.004593739	-2.671975241	down	--	--	--	--	--	--	conserved hypothetical protein [Ajellomyces capsulatus G186AR] 
comp206462_c1	0.003393623	-2.853501552	down	--	--	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuolar lumen (GO:0005775);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: amino acid transport (GO:0006865);; Biological Process: vacuolar transport (GO:0007034);; Biological Process: response to nematode (GO:0009624);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: antibiotic transport (GO:0042891);; Cellular Component: ATP-binding cassette (ABC) transporter complex (GO:0043190);; "	--	ABC transporter G family member 16 GN=T15C9.80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein (Fragment) GN=Si040245m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: ABC transporter G family member 16-like [Setaria italica]
comp221209_c0	0.003116315	1.878061498	up	--	--	--	--	--	--	--
comp223787_c0	0.009294594	1.765068641	up	[QR]	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: cellular process (GO:0009987);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: methylation (GO:0032259);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: response to cadmium ion (GO:0046686);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI2G11740 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: putative methyltransferase DDB_G0268948-like [Brachypodium distachyon]
comp207586_c1	0.001372041	-3.177573839	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: peptide receptor activity (GO:0001653);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane signaling receptor activity (GO:0004888);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: anion transport (GO:0006820);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellulose metabolic process (GO:0030243);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: stamen development (GO:0048443);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: response to other organism (GO:0051707);; "	--	Phytosulfokine receptor 1 (Precursor) GN=PSKR OS=Daucus carota (Carrot) PE=1 SV=1	Uncharacterized protein GN=Si016167m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: phytosulfokine receptor 1-like [Setaria italica]
comp199192_c0	0.006336005	-1.96787382	down	--	--	"Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si008765m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101760298 isoform X1 [Setaria italica] 
comp201779_c0	0.001287672	1.966505421	up	--	--	"Molecular Function: UDP-glucose 6-dehydrogenase activity (GO:0003979);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: UDP-glucuronate biosynthetic process (GO:0006065);; Biological Process: Golgi organization (GO:0007030);; Biological Process: vacuole organization (GO:0007033);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: D-xylose metabolic process (GO:0042732);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: NAD binding (GO:0051287);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00012|4e-28|sbi:SORBI_01g043150|hypothetical protein	UDP-glucose 6-dehydrogenase 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein GN=VIT_14s0108g01590 OS=Vitis vinifera (Grape) PE=4 SV=1	PREDICTED: UDP-glucose 6-dehydrogenase 4-like [Setaria italica]
comp198487_c0	0.000817823	-2.237246338	down	--	--	"Cellular Component: chloroplast (GO:0009507);; Cellular Component: membrane (GO:0016020);; "	K03301|2e-22|sbi:SORBI_03g029490|hypothetical protein	Formin-like protein 20 GN=MBK20.20/MBK20.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Putative uncharacterized protein Sb03g029490 GN=Sb03g029490 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g029490 [Sorghum bicolor] 
comp205232_c1	4.62E-05	-2.781931435	down	--	--	"Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Biological Process: apoptotic process (GO:0006915);; Biological Process: defense response (GO:0006952);; Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: ADP binding (GO:0043531);; Cellular Component: cell part (GO:0044464);; Biological Process: innate immune response (GO:0045087);; "	--	Putative disease resistance protein RGA3 GN=RGA3 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=2	Uncharacterized protein GN=Si033866m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative disease resistance protein RGA3-like [Setaria italica]
comp230543_c0	2.21E-05	2.423472159	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: regulation of protein localization (GO:0032880);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Cellular Component: anchored to plasma membrane (GO:0046658);; "	--	Glucan endo-1,3-beta-glucosidase 14 (Precursor) GN=At2g27500 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=BRADI3G44910 OS=Brachypodium distachyon (Purple false brome) PE=3 SV=1	PREDICTED: glucan endo-1,3-beta-glucosidase 14-like isoform X1 [Setaria italica] 
comp233131_c0	0.00415129	1.960818589	up	[RTKL]	--	"Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: signal transduction (GO:0007165);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to nutrient (GO:0007584);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: potassium ion import (GO:0010107);; Biological Process: stomatal movement (GO:0010118);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: mannitol biosynthetic process (GO:0019593);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: cellular response to water deprivation (GO:0042631);; Molecular Function: galactinol-sucrose galactosyltransferase activity (GO:0047274);; "	--	CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si029821m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: CBL-interacting protein kinase 2-like isoform X1 [Setaria italica]
comp232384_c0	1.95E-05	2.832112447	up	[T]	Signal transduction mechanisms 	"Molecular Function: two-component response regulator activity (GO:0000156);; Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: transmembrane signaling receptor activity (GO:0004888);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: response to inorganic substance (GO:0010035);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; Molecular Function: phosphatase activity (GO:0016791);; Molecular Function: enzyme binding (GO:0019899);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: shoot development (GO:0048367);; Biological Process: organ development (GO:0048513);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Histidine kinase 5 GN=MAJ23.80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein HK6-2 GN=HK6-2 OS=Selaginella moellendorffii (Spikemoss) PE=4 SV=1	heat shock transcription factor 2 [Coniothyrium minitans]
comp230204_c1	0.003266341	-1.916097148	down	--	--	"Molecular Function: L-alanine:2-oxoglutarate aminotransferase activity (GO:0004021);; Molecular Function: L-tyrosine:2-oxoglutarate aminotransferase activity (GO:0004838);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: metabolic process (GO:0008152);; Biological Process: shade avoidance (GO:0009641);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: maintenance of root meristem identity (GO:0010078);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbon-sulfur lyase activity (GO:0016846);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: L-phenylalanine:pyruvate aminotransferase activity (GO:0047312);; Molecular Function: alliin lyase activity (GO:0047654);; Biological Process: gynoecium development (GO:0048467);; Biological Process: cotyledon development (GO:0048825);; Molecular Function: L-leucine:2-oxoglutarate aminotransferase activity (GO:0050048);; Molecular Function: L-tryptophan:2-oxoglutarate aminotransferase activity (GO:0050362);; Biological Process: primary root development (GO:0080022);; Molecular Function: L-tryptophan:pyruvate aminotransferase activity (GO:0080097);; Molecular Function: L-tyrosine:pyruvate aminotransferase activity (GO:0080098);; Molecular Function: L-methionine:2-oxoglutarate aminotransferase activity (GO:0080099);; Molecular Function: L-glutamine:2-oxoglutarate aminotransferase activity (GO:0080100);; Molecular Function: L-phenylalanine:2-oxoglutarate aminotransferase activity (GO:0080130);; "	--	"Alliin lyase (Precursor; Fragment) OS=Allium cepa var. aggregatum (Shallot) PE=2 SV=1"	Uncharacterized protein GN=Si001197m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: tryptophan aminotransferase-related protein 4-like [Setaria italica]
comp228697_c1	1.58E-05	-2.513473213	down	[C]	Energy production and conversion 	"Molecular Function: binding (GO:0005488);; Cellular Component: cytosol (GO:0005829);; Biological Process: iron ion transport (GO:0006826);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: nitrate transport (GO:0015706);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00121|1e-138|osa:4343942|Os07g0621800	Alcohol dehydrogenase-like 2 GN=At1g22440 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si030124m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: alcohol dehydrogenase-like 2-like [Setaria italica]
comp226625_c0	0.002228459	2.136596164	up	--	--	"Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: extracellular region (GO:0005576);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Pepsin A OS=Zea mays (Maize) PE=2 SV=1	pepsin A precursor [Zea mays] 
comp162206_c0	1.17E-05	-3.364274603	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: heat acclimation (GO:0010286);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cell periphery (GO:0071944);; Biological Process: response to karrikin (GO:0080167);; Biological Process: response to alcohol (GO:0097305);; "	--	Gibberellin-regulated protein 4 (Precursor) GN=GASA4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb02g024660 GN=Sb02g024660 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g024660 [Sorghum bicolor] 
comp358137_c0	0.006133771	-3.665591194	down	[P]	Inorganic ion transport and metabolism 	--	--	--	Uncharacterized protein GN=Si012728m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_502020 [Zea mays]
comp180428_c0	0.004812602	2.553235536	up	--	--	"Biological Process: cation transport (GO:0006812);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: response to organic substance (GO:0010033);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular component organization (GO:0016043);; Cellular Component: cell part (GO:0044464);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: epithelium development (GO:0060429);; Biological Process: regulation of biological quality (GO:0065008);; "	--	Lysine histidine transporter-like 2 GN=At1g67640 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si012642m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: vacuolar amino acid transporter 1-like [Setaria italica]
comp215247_c1	0.001140285	1.976383121	up	--	--	"Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: response to 1-aminocyclopropane-1-carboxylic acid (GO:0009961);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: nitrate transport (GO:0015706);; Biological Process: proline transport (GO:0015824);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of DNA-dependent transcription in response to stress (GO:0043620);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: lateral root development (GO:0048527);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; Biological Process: cellular heat acclimation (GO:0070370);; Biological Process: cellular response to boron-containing substance deprivation (GO:0080169);; "	--	Probable WRKY transcription factor 75 GN=WRKY75 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si026859m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 75-like [Setaria italica]
comp198727_c0	6.08E-05	-2.428935575	down	[G]	Carbohydrate transport and metabolism 	"Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem development (GO:0010089);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: pectin biosynthetic process (GO:0045489);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	--	Uncharacterized protein GN=ZEAMMB73_510640 OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp236479_c0	4.24E-09	3.105990702	up	--	--	--	--	--	Uncharacterized protein GN=PRUPE_ppa014270mg OS=Prunus persica (Peach) PE=4 SV=1	--
comp171944_c0	0.008536051	2.14399684	up	--	--	"Cellular Component: peroxisome (GO:0005777);; Molecular Function: hydrolase activity (GO:0016787);; "	--	--	Uncharacterized protein GN=BRADI1G12080 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: putative esterase ComA2-like [Brachypodium distachyon]
comp209698_c0	0.00152718	1.959392664	up	--	--	"Molecular Function: calcium ion binding (GO:0005509);; "	--	--	Uncharacterized protein GN=Si007620m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772020 [Setaria italica]
comp225379_c0	0.000342666	2.109399172	up	--	--	"Biological Process: multicellular organismal development (GO:0007275);; Molecular Function: O-acyltransferase activity (GO:0008374);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: agmatine N4-coumaroyltransferase activity (GO:0047634);; Biological Process: anatomical structure development (GO:0048856);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; Biological Process: biological regulation (GO:0065007);; "	--	Agmatine coumaroyltransferase-1 GN=ACT-1 OS=Hordeum vulgare (Barley) PE=1 SV=1	Uncharacterized protein GN=Si035760m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: agmatine coumaroyltransferase-2-like [Setaria italica]
comp220718_c0	4.78E-05	2.293522407	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: regulation of abscisic acid biosynthetic process (GO:0010115);; Molecular Function: ligase activity (GO:0016874);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: pigment metabolic process (GO:0042440);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: shoot development (GO:0048367);; Biological Process: organ development (GO:0048513);; Biological Process: negative regulation of cellular process (GO:0048523);; Biological Process: localization (GO:0051179);; Biological Process: cellular response to organic substance (GO:0071310);; Biological Process: regulation of chlorophyll metabolic process (GO:0090056);; "	--	U-box domain-containing protein 43 GN=PUB43 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si000573m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 43-like [Setaria italica]
comp171402_c0	0.000845611	2.021274547	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: metal ion binding (GO:0046872);; "	--	Zinc finger CCCH domain-containing protein 37 GN=OJ1593_C11.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=OB05G30940 OS=Oryza brachyantha PE=4 SV=1	Os05g0525900 [Oryza sativa Japonica Group] 
comp221925_c1	0.008777904	-1.851029447	down	--	--	"Molecular Function: zinc ion binding (GO:0008270);; "	--	Probable E3 ubiquitin ligase SUD1 GN=F28A23.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101773263 isoform X4 [Setaria italica]
comp227228_c0	0.001083358	-2.122398133	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: cellular amino acid metabolic process (GO:0006520);; Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to toxin (GO:0009636);; Biological Process: response to salt stress (GO:0009651);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Biological Process: methylation (GO:0032259);; Biological Process: xenobiotic catabolic process (GO:0042178);; Biological Process: indole-containing compound metabolic process (GO:0042430);; Biological Process: pigment biosynthetic process (GO:0046148);; Molecular Function: coniferyl-alcohol glucosyltransferase activity (GO:0047209);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 3'-O-glucosyltransferase activity (GO:0080045);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; "	--	Anthocyanidin 5,3-O-glucosyltransferase GN=RhGT1 OS=Rosa hybrid cultivar PE=2 SV=1	Anthocyanidin 5,3-O-glucosyltransferase OS=Zea mays (Maize) PE=2 SV=1	anthocyanidin 5,3-O-glucosyltransferase [Zea mays]
comp222275_c0	1.48E-05	-2.58054404	down	--	--	"Biological Process: defense response (GO:0006952);; Biological Process: response to bacterium (GO:0009617);; Biological Process: cellular process (GO:0009987);; Cellular Component: cell part (GO:0044464);; "	--	Cysteine-rich repeat secretory protein 12 (Precursor) GN=CRRSP12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si006897m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cysteine-rich repeat secretory protein 12-like [Setaria italica]
comp208908_c1	0.000198375	-3.454558896	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Biological Process: suberin biosynthetic process (GO:0010345);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: pigment biosynthetic process (GO:0046148);; Molecular Function: aromatase activity (GO:0070330);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; "	--	Cytochrome P450 704C1 GN=CYP704C1 OS=Pinus taeda (Loblolly pine) PE=2 SV=1	Uncharacterized protein GN=ms*-sb200 OS=Zea mays (Maize) PE=2 SV=1	male sterile26 [Zea mays] 
comp197221_c0	0.007774729	1.838023146	up	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; "	--	Protein terminal ear1 homolog GN=PLA2 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si022663m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp212609_c0	0.008783474	-2.46544111	down	[D]	Cell cycle control, cell division, chromosome partitioning 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: histidine-tRNA ligase activity (GO:0004821);; Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: histidyl-tRNA aminoacylation (GO:0006427);; Biological Process: biosynthetic process (GO:0009058);; Cellular Component: plastid (GO:0009536);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: gene expression (GO:0010467);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: ammonia-lyase activity (GO:0016841);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: ovule development (GO:0048481);; Biological Process: organ development (GO:0048513);; Biological Process: cellular developmental process (GO:0048869);; Cellular Component: cell periphery (GO:0071944);; "	K01892|1e-16|sbi:SORBI_09g003930|hypothetical protein	Histidine--tRNA ligase OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si021163m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: histidine--tRNA ligase-like [Setaria italica]
comp207586_c0	1.09E-05	-2.715854577	down	--	--	"Molecular Function: peptide receptor activity (GO:0001653);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane signaling receptor activity (GO:0004888);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: pattern specification process (GO:0007389);; Biological Process: epidermis development (GO:0008544);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular component morphogenesis (GO:0032989);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: external encapsulating structure organization (GO:0045229);; Biological Process: gametophyte development (GO:0048229);; Biological Process: meristem development (GO:0048507);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: anther development (GO:0048653);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: regulation of biological quality (GO:0065008);; Molecular Function: organic cyclic compound binding (GO:0097159);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Phytosulfokine receptor 1 (Precursor) GN=F5O4.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4	Uncharacterized protein GN=Si016167m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: phytosulfokine receptor 1-like [Setaria italica]
comp218127_c1	0.000859117	2.033027992	up	[RTKL]	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein N-linked glycosylation (GO:0006487);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: cellular cation homeostasis (GO:0030003);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Biological Process: proteasome assembly (GO:0043248);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: root hair elongation (GO:0048767);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor) GN=SD25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g008160 GN=Sb03g008160 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Setaria italica]
comp225222_c0	0.000442245	2.182664416	up	[C]	Energy production and conversion 	"Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: inorganic diphosphatase activity (GO:0004427);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: ion transport (GO:0006811);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: innate immune response (GO:0045087);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: response to other organism (GO:0051707);; Biological Process: iron ion homeostasis (GO:0055072);; "	K01507|1e-136|zma:100272302|hypothetical protein LOC100272302	Soluble inorganic pyrophosphatase GN=IPP OS=Zea mays (Maize) PE=2 SV=1	Uncharacterized protein GN=Si023175m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: soluble inorganic pyrophosphatase-like isoform X2 [Setaria italica]
comp184257_c1	2.80E-06	3.897018537	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: detection of external stimulus (GO:0009581);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to insect (GO:0009625);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: negative regulation of defense response (GO:0031348);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: anther development (GO:0048653);; Biological Process: defense response to fungus (GO:0050832);; "	--	Probable receptor-like protein kinase At5g39030 (Precursor) GN=At5g39030 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Os01g0113500 protein GN=Os01g0113500 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=2	Os01g0113500 [Oryza sativa Japonica Group] 
comp202483_c0	1.65E-07	4.00100173	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: transcription, DNA-dependent (GO:0006351);; "	--	Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si037714m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: putative AP2/EREBP transcription factor superfamily protein [Zea mays]
comp205651_c0	0.000810231	-2.077036029	down	[M]	Cell wall/membrane/envelope biogenesis 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si038030m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101782692 [Setaria italica]
comp221337_c0	0.00245829	-2.17383819	down	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein P0548E04.16 GN=P0548E04.16 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os06g0725500 [Oryza sativa Japonica Group] 
comp230592_c0	3.36E-06	2.552476617	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; "	--	Uncharacterized protein At2g33490 GN=At2g33490 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si016668m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At2g33490-like [Setaria italica]
comp164997_c0	0.005775066	-3.218168725	down	--	--	--	--	Putative formin-like protein 21a GN=FH21A OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si025345m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775379 [Setaria italica]
comp224235_c0	0.000814879	-2.425581218	down	--	--	--	--	Pollen-specific protein SF3 GN=SF3 OS=Helianthus annuus (Common sunflower) PE=2 SV=1	Uncharacterized protein OS=Medicago truncatula (Barrel medic) PE=2 SV=1	unknown [Medicago truncatula]
comp216354_c0	6.50E-06	-2.771043845	down	[RTKL]	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to salt stress (GO:0009651);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: protein phosphatase binding (GO:0019903);; Biological Process: protein autophosphorylation (GO:0046777);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: regulation of pollen tube growth (GO:0080092);; "	--	Phosphoenolpyruvate carboxylase kinase 2 GN=PPCK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si018012m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Setaria italica]
comp225868_c0	8.34E-06	-2.617876488	down	[IQR]	--	"Biological Process: maltose metabolic process (GO:0000023);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	--	Tropinone reductase homolog At1g07440 GN=At1g07440 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si002515m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: tropinone reductase homolog At1g07440-like [Setaria italica]
comp213324_c0	9.55E-15	-4.981313624	down	--	--	"Molecular Function: copper ion binding (GO:0005507);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: phosphatidylinositol-4,5-bisphosphate binding (GO:0005546);; Molecular Function: phosphatidylinositol-3,4,5-trisphosphate binding (GO:0005547);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytoplasmic microtubule (GO:0005881);; Biological Process: RNA processing (GO:0006396);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: thylakoid (GO:0009579);; Biological Process: cellular response to magnesium starvation (GO:0010350);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: negative regulation of microtubule polymerization (GO:0031115);; Biological Process: positive regulation of microtubule depolymerization (GO:0031117);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: cellular response to potassium ion (GO:0035865);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: phosphatidylinositol-3,4-bisphosphate binding (GO:0043325);; Biological Process: cortical microtubule organization (GO:0043622);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: negative regulation of unidimensional cell growth (GO:0051511);; Biological Process: response to calcium ion (GO:0051592);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: cellular response to copper ion (GO:0071280);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to magnesium ion (GO:0071286);; Biological Process: cellular response to mannitol stimulus (GO:0071325);; Biological Process: cellular response to salt stress (GO:0071472);; Biological Process: cellular response to sorbitol (GO:0072709);; Biological Process: intracellular transport of viral material (GO:0075733);; Molecular Function: phosphatidylinositol-3,5-bisphosphate binding (GO:0080025);; "	--	Plasma membrane-associated cation-binding protein 1 GN=F1C12.180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb04g011100 GN=Sb04g011100 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: plasma membrane-associated cation-binding protein 1-like [Setaria italica]
comp209063_c1	0.007958825	-1.976892651	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: negative regulation of ethylene mediated signaling pathway (GO:0010105);; Cellular Component: SCF ubiquitin ligase complex (GO:0019005);; Biological Process: regulation of circadian rhythm (GO:0042752);; "	K14515|6e-73|sbi:SORBI_04g006870|hypothetical protein	EIN3-binding F-box protein 1 GN=F13B15.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016594m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: EIN3-binding F-box protein 1-like [Setaria italica]
comp171616_c1	0.000345314	-2.201861474	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: developmental process (GO:0032502);; Biological Process: trans-zeatin biosynthetic process (GO:0033466);; Biological Process: growth (GO:0040007);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: gibberellin catabolic process (GO:0045487);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Secologanin synthase GN=CYP72A1 OS=Catharanthus roseus (Madagascar periwinkle) PE=2 SV=1	Putative cytochrome P450 superfamily protein GN=ZEAMMB73_013903 OS=Zea mays (Maize) PE=3 SV=1	putative cytochrome P450 superfamily protein [Zea mays]
comp209693_c0	0.003614896	1.832677547	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: amino acid transport (GO:0006865);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: longitudinal axis specification (GO:0009942);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: establishment of cell polarity (GO:0030010);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of DNA-dependent transcription in response to stress (GO:0043620);; Biological Process: lateral root development (GO:0048527);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; "	--	Probable WRKY transcription factor 57 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=BRADI1G08106 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 58-like [Brachypodium distachyon]
comp224949_c1	1.91E-08	-3.87666537	down	--	--	--	--	--	--	--
comp221384_c0	0.000594085	3.496355273	up	--	--	--	--	--	--	--
comp222820_c0	0.000330835	2.183006659	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: SNAP receptor activity (GO:0005484);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: nucleotide transport (GO:0006862);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cellular membrane fusion (GO:0006944);; Cellular Component: cell plate (GO:0009504);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to insect (GO:0009625);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: ammonium transport (GO:0015696);; Biological Process: basic amino acid transport (GO:0015802);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Biological Process: regulation of ion transport (GO:0043269);; Biological Process: regulation of multi-organism process (GO:0043900);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: response to other organism (GO:0051707);; "	--	SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	SNAP25 homologous protein SNAP30 OS=Zea mays (Maize) PE=2 SV=1	TPA: SNAP25 protein SNAP30 [Zea mays]
comp213077_c0	0.00040433	2.124898841	up	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: metabolic process (GO:0008152);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: system development (GO:0048731);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of developmental process (GO:0050793);; Biological Process: regulation of cellular process (GO:0050794);; Cellular Component: cell periphery (GO:0071944);; "	--	Formin-like protein 14 GN=FH14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3	Putative uncharacterized protein Sb02g036080 GN=Sb02g036080 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770485 [Setaria italica]
comp231256_c2	0.000613686	2.034941463	up	[RTKL]	--	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: anion transport (GO:0006820);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: programmed cell death (GO:0012501);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: innate immune response (GO:0045087);; Biological Process: xylan metabolic process (GO:0045491);; Biological Process: nitrogen compound transport (GO:0071705);; "	--	Cysteine-rich receptor-like protein kinase 10 (Precursor) GN=F21P8.70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Uncharacterized protein GN=Si021429m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	putative DUF26-domain receptor-like protein kinase family protein [Zea mays]
comp205138_c0	3.14E-06	3.452750527	up	--	--	--	--	--	Predicted protein GN=OSTLU_28315 OS=Ostreococcus lucimarinus (strain CCE9901) PE=4 SV=1	--
comp231745_c0	0.00374166	1.956981983	up	[C]	Energy production and conversion 	"Cellular Component: extracellular space (GO:0005615);; Cellular Component: vacuole (GO:0005773);; Molecular Function: primary amine oxidase activity (GO:0008131);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Cellular Component: plastid (GO:0009536);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cytokinin catabolic process (GO:0009823);; Biological Process: xylem development (GO:0010089);; Biological Process: inflorescence development (GO:0010229);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cytokinin dehydrogenase activity (GO:0019139);; Biological Process: electron transport chain (GO:0022900);; Biological Process: secretion by cell (GO:0032940);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: meristem development (GO:0048507);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; "	K00279|0.0|sbi:SORBI_03g036160|hypothetical protein	Cytokinin dehydrogenase 5 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si000960m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cytokinin dehydrogenase 5-like [Setaria italica]
comp226358_c0	3.19E-07	2.765971126	up	--	--	"Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);; Biological Process: negative regulation of peptidase activity (GO:0010466);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: response to stimulus (GO:0050896);; "	--	Cysteine proteinase inhibitor 8 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative cystatin GN=cc7 OS=Zea mays (Maize) PE=2 SV=1	TPA: putative cystatin [Zea mays]
comp224731_c0	1.14E-09	-3.576184548	down	--	--	"Molecular Function: purine nucleobase transmembrane transporter activity (GO:0005345);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: purine nucleobase transport (GO:0006863);; Biological Process: cytokinin transport (GO:0010184);; Molecular Function: purine nucleoside transmembrane transporter activity (GO:0015211);; Biological Process: nucleobase-containing compound transport (GO:0015931);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Cellular Component: cell part (GO:0044464);; Biological Process: regulation of phosphorus metabolic process (GO:0051174);; "	--	Probable purine permease 4 GN=PUP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb03g031210 GN=Sb03g031210 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_217515 [Zea mays]
comp232948_c0	5.20E-06	-2.6184516	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: phosphorus metabolic process (GO:0006793);; Biological Process: signal transduction (GO:0007165);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: shoot development (GO:0048367);; Biological Process: meristem development (GO:0048507);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: regulation of developmental process (GO:0050793);; Cellular Component: cell periphery (GO:0071944);; "	--	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor) GN=At1g66830 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si021285m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Setaria italica]
comp209547_c0	0.003933476	1.87392924	up	--	--	"Cellular Component: integral to membrane (GO:0016021);; "	--	--	Uncharacterized protein GN=Si018702m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypoxia induced protein conserved region containing protein [Zea mays]
comp456877_c0	0.000757323	-3.542208248	down	--	--	"Cellular Component: plastid (GO:0009536);; Cellular Component: intracellular part (GO:0044424);; "	--	CASP-like protein Sb04g002820 GN=Sb04g002820 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	Putative uncharacterized protein GN=OsI_35324 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	hypothetical protein OsI_35324 [Oryza sativa Indica Group]
comp163075_c0	0.000744128	-2.087744894	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: stamen development (GO:0048443);; Biological Process: petal morphogenesis (GO:0048446);; Biological Process: ovule development (GO:0048481);; Biological Process: root hair cell development (GO:0080147);; Biological Process: positive regulation of brassinosteroid biosynthetic process (GO:2000488);; "	--	Transcription factor bHLH78 GN=K15N18.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si026387m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH62-like [Setaria italica]
comp217126_c0	1.27E-07	3.134265854	up	--	--	"Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: cotranscriptional gene silencing by small RNA (GO:0033562);; "	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101773723 [Setaria italica]
comp229004_c0	2.38E-07	-3.091778583	down	--	--	"Biological Process: metabolic process (GO:0008152);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: multicellular organismal process (GO:0032501);; Cellular Component: intracellular part (GO:0044424);; Biological Process: cell development (GO:0048468);; Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si030423m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable carboxylesterase 15-like [Setaria italica]
comp209895_c0	0.009727942	1.88413276	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: cytosol (GO:0005829);; Cellular Component: chloroplast (GO:0009507);; Biological Process: trichome differentiation (GO:0010026);; Biological Process: regulation of epidermal cell division (GO:0010482);; Biological Process: intracellular transport (GO:0046907);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: histone H3-K9 methylation (GO:0051567);; "	--	GEM-like protein 4 GN=At5g08350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si011043m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: GEM-like protein 4-like [Setaria italica]
comp224217_c0	2.89E-08	-3.170651441	down	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Biological Process: gene expression (GO:0010467);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: RNA metabolic process (GO:0016070);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si035929m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769346 [Setaria italica]
comp221648_c0	0.00197692	-2.072552214	down	--	--	--	--	Formin-like protein 20 GN=MBK20.20/MBK20.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein (Fragment) GN=Si024221m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101771447 [Setaria italica]
comp235036_c0	0.00315609	-1.929178876	down	[Z]	Cytoskeleton 	"Biological Process: nuclear division (GO:0000280);; Biological Process: telomere maintenance (GO:0000723);; Biological Process: cell morphogenesis involved in differentiation (GO:0000904);; Biological Process: phragmoplast assembly (GO:0000914);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: kinesin complex (GO:0005871);; Cellular Component: microtubule (GO:0005874);; Cellular Component: spindle microtubule (GO:0005876);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: microtubule-based movement (GO:0007018);; Biological Process: chromosome segregation (GO:0007059);; Biological Process: meiosis I (GO:0007127);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: minus-end-directed microtubule motor activity (GO:0008569);; Molecular Function: plus-end-directed microtubule motor activity (GO:0008574);; Cellular Component: phragmoplast (GO:0009524);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: cytokinin mediated signaling pathway (GO:0009736);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: anastral spindle assembly involved in male meiosis (GO:0009971);; Biological Process: specification of carpel identity (GO:0010094);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: membrane (GO:0016020);; Biological Process: histone phosphorylation (GO:0016572);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Biological Process: gene silencing by RNA (GO:0031047);; Biological Process: intraflagellar anterograde transport (GO:0035720);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: cellular catabolic process (GO:0044248);; Biological Process: cellular lipid metabolic process (GO:0044255);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Biological Process: motile cilium assembly (GO:0044458);; Biological Process: actin nucleation (GO:0045010);; Biological Process: developmental growth (GO:0048589);; Biological Process: histone H3-K9 methylation (GO:0051567);; Biological Process: microgametogenesis (GO:0055046);; Biological Process: phragmoplast microtubule organization (GO:0080175);; Cellular Component: microtubule-based flagellar cytoplasm (GO:0097014);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Kinesin-4 GN=F2P16.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si034055m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: kinesin-4-like [Setaria italica]
comp224484_c0	0.003649971	-2.02150982	down	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: cellular process (GO:0009987);; Cellular Component: nuclear lumen (GO:0031981);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb05g024250 GN=Sb05g024250 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g024250 [Sorghum bicolor] 
comp226074_c0	7.42E-05	2.311048551	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: response to chitin (GO:0010200);; Biological Process: histone H3-K9 demethylation (GO:0033169);; Biological Process: shoot development (GO:0048367);; Biological Process: negative regulation of short-day photoperiodism, flowering (GO:0048577);; Biological Process: negative regulation of long-day photoperiodism, flowering (GO:0048579);; "	--	Lysine-specific demethylase REF6 GN=T29H11_50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si034241m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101763783 [Setaria italica]
comp191233_c0	0.004523167	-2.036253222	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral to membrane (GO:0016021);; "	--	CASP-like protein Sb01g044070 GN=Sb01g044070 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	Uncharacterized protein GN=Si037520m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: CASP-like protein Sb01g044070-like [Setaria italica]
comp218329_c0	0.003579922	-1.887362911	down	--	--	"Biological Process: iron ion transport (GO:0006826);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: intracellular organelle part (GO:0044446);; Cellular Component: cell periphery (GO:0071944);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si001571m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755298 [Setaria italica]
comp219042_c0	0	5.169261747	up	--	--	--	--	--	--	--
comp216224_c0	0.004016283	-1.892581413	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Sulfated surface glycoprotein 185 (Precursor) OS=Volvox carteri (Green alga) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100272399 [Zea mays] 
comp225532_c0	2.07E-05	2.529897353	up	--	--	--	--	--	--	--
comp227677_c0	0.004989963	1.868971411	up	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb10g028890 GN=Sb10g028890 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762573 [Setaria italica]
comp235697_c0	3.58E-05	2.340539387	up	--	--	--	--	--	Uncharacterized protein GN=F775_04499 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_04499 [Aegilops tauschii]
comp217962_c0	1.83E-06	3.757995792	up	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: plastid small ribosomal subunit (GO:0000312);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: protein targeting to chloroplast (GO:0045036);; "	K02871|5e-44|zma:100192010|IDP813	50S ribosomal protein L13, chloroplastic GN=rpl13 OS=Porphyra purpurea (Red seaweed) PE=3 SV=1	50S ribosomal protein L13, chloroplastic GN=rpl13 OS=Fucus vesiculosus (Bladder wrack) PE=3 SV=1	50S ribosomal protein L13 [Paulinella chromatophora] 
comp230998_c0	0.000878203	-2.065167462	down	[E]	Amino acid transport and metabolism 	"Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: transporter activity (GO:0005215);; Molecular Function: binding (GO:0005488);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: transport (GO:0006810);; Biological Process: cation transport (GO:0006812);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to organic cyclic compound (GO:0014070);; Cellular Component: membrane (GO:0016020);; Molecular Function: dipeptide transporter activity (GO:0042936);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: response to amino acid stimulus (GO:0043200);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Biological Process: abscisic acid transport (GO:0080168);; Molecular Function: abscisic acid transporter activity (GO:0090440);; "	--	Probable peptide/nitrate transporter At1g27040 GN=At1g27040 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si026160m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable peptide/nitrate transporter At1g27040-like [Setaria italica]
comp225685_c0	3.58E-07	3.228657724	up	[R]	General function prediction only 	"Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; "	--	--	Stackhouse genomic scaffold, scaffold_2 GN=CHC_T00003707001 OS=Chondrus crispus (Carragheen moss) PE=4 SV=1	esterase-lipase [Chaetomium thermophilum] 
comp193385_c0	0.000441819	-3.154480399	down	--	--	--	--	Proline-rich receptor-like protein kinase PERK2 GN=PERK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Putative uncharacterized protein Sb01g045630 GN=Sb01g045630 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101253557 [Solanum lycopersicum]
comp204531_c1	5.98E-05	2.741606175	up	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: guanylate cyclase activity (GO:0004383);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cGMP biosynthetic process (GO:0006182);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to chitin (GO:0010200);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: protein kinase binding (GO:0019901);; Molecular Function: ion binding (GO:0043167);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: defense response to fungus (GO:0050832);; "	--	Wall-associated receptor kinase-like 22 (Precursor) GN=F20B17_27 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si000405m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: wall-associated receptor kinase 2-like [Setaria italica]
comp202186_c0	0.005864003	1.779610271	up	[RTKL]	--	"Biological Process: immune response-regulating signaling pathway (GO:0002764);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: epidermis development (GO:0008544);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development (GO:0009790);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: defense response signaling pathway, resistance gene-independent (GO:0010204);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transmembrane receptor protein kinase activity (GO:0019199);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: intracellular signal transduction (GO:0035556);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: shoot development (GO:0048367);; Biological Process: post-embryonic organ development (GO:0048569);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: cellular macromolecule localization (GO:0070727);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) GN=At3g47570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein B1307A11.13 GN=B1307A11.13 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	putative protein kinase Xa21 [Oryza sativa Japonica Group]
comp226411_c0	4.28E-06	2.520797437	up	[MG]	--	"Biological Process: alternative nuclear mRNA splicing, via spliceosome (GO:0000380);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucose metabolic process (GO:0006006);; Biological Process: mRNA export from nucleus (GO:0006406);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo sac development (GO:0009553);; Biological Process: pollen development (GO:0009555);; Biological Process: response to salt stress (GO:0009651);; Biological Process: etioplast organization (GO:0009662);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: histone H3-K36 methylation (GO:0010452);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Biological Process: positive regulation of histone methylation (GO:0031062);; Biological Process: DNA duplex unwinding (GO:0032508);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: negative regulation of circadian rhythm (GO:0042754);; Molecular Function: histone methyltransferase activity (H3-K4 specific) (GO:0042800);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: small molecule metabolic process (GO:0044281);; Molecular Function: carotenoid isomerase activity (GO:0046608);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: histone methyltransferase activity (H3-K36 specific) (GO:0046975);; Cellular Component: apoplast (GO:0048046);; Biological Process: ovule development (GO:0048481);; Biological Process: anther development (GO:0048653);; "	--	Cinnamoyl-CoA reductase 1 GN=T24D18.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=OB01G21680 OS=Oryza brachyantha PE=4 SV=1	PREDICTED: cinnamoyl-CoA reductase 1-like [Setaria italica]
comp231679_c1	0.001561119	-1.993658032	down	[RTKL]	--	"Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Biological Process: nuclear-transcribed mRNA catabolic process (GO:0000956);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: water transport (GO:0006833);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to nutrient (GO:0007584);; Biological Process: response to pH (GO:0009268);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: potassium ion import (GO:0010107);; Biological Process: stomatal movement (GO:0010118);; Biological Process: leaf senescence (GO:0010150);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: basipetal auxin transport (GO:0010540);; Cellular Component: nuclear speck (GO:0016607);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Cellular Component: interchromatin granule (GO:0035061);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	CBL-interacting protein kinase 4 GN=CIPK4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si022090m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: CBL-interacting protein kinase 4-like [Setaria italica]
comp208115_c0	0.000529486	-2.543129026	down	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to stress (GO:0006950);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: indole-containing compound metabolic process (GO:0042430);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: system development (GO:0048731);; Biological Process: regulation of biological quality (GO:0065008);; "	--	Scarecrow-like protein 32 GN=SCL32 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb09g024690 GN=Sb09g024690 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g024690 [Sorghum bicolor] 
comp197623_c0	0.002411254	1.87616758	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: photosystem I (GO:0009522);; Cellular Component: photosystem II (GO:0009523);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to blue light (GO:0009637);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: response to far red light (GO:0010218);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; "	K08912|0.0|zma:100274453|hypothetical protein LOC100274453	Chlorophyll a-b binding protein 2, chloroplastic (Precursor) GN=P0518F01.17-1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=ZEAMMB73_422999 OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100274453 [Zea mays] 
comp162412_c0	1.80E-12	4.624192964	up	--	--	--	--	--	--	--
comp224613_c0	0.001313041	-2.101897278	down	--	--	--	--	--	--	--
comp204507_c0	0.000531926	-2.252942739	down	[P]	Inorganic ion transport and metabolism 	--	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb01g048770 GN=Sb01g048770 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769088 [Setaria italica]
comp259920_c0	2.84E-05	2.517115057	up	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to chitin (GO:0010200);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root development (GO:0048364);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell division (GO:0051301);; Biological Process: organic substance transport (GO:0071702);; Biological Process: nitrogen compound transport (GO:0071705);; "	--	E3 ubiquitin-protein ligase ATL31 (Precursor) GN=F21A20.130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	cDNA clone:002-141-F12, full insert sequence GN=OSJNBa0038J17.7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os01g0212700 [Oryza sativa Japonica Group] 
comp235029_c2	0.004070748	-1.871259923	down	--	--	"Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; "	--	Uncharacterized mitochondrial protein AtMg01250 GN=AtMg01250 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	Putative uncharacterized protein Sb08g003575 (Fragment) GN=Sb08g003575 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g003575 [Sorghum bicolor] 
comp222966_c0	0.006366747	1.761594281	up	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: sucrose transmembrane transporter activity (GO:0008515);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: pollen development (GO:0009555);; Biological Process: response to salt stress (GO:0009651);; Biological Process: anther dehiscence (GO:0009901);; Biological Process: leaf senescence (GO:0010150);; Biological Process: sucrose transport (GO:0015770);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular cation homeostasis (GO:0030003);; Molecular Function: sugar transmembrane transporter activity (GO:0051119);; Biological Process: cellular response to abscisic acid stimulus (GO:0071215);; Biological Process: cellular response to salicylic acid stimulus (GO:0071446);; Biological Process: cellular response to osmotic stress (GO:0071470);; "	--	Bidirectional sugar transporter SWEET16 GN=OsJ_10795 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si036734m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: bidirectional sugar transporter SWEET16-like [Setaria italica]
comp223696_c0	1.98E-06	-2.7841592	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: positive regulation of cell proliferation (GO:0008284);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: fruit development (GO:0010154);; Biological Process: inflorescence development (GO:0010229);; Biological Process: leaf formation (GO:0010338);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: flavonoid 3'-monooxygenase activity (GO:0016711);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: regulation of growth rate (GO:0040009);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: membrane part (GO:0044425);; Molecular Function: p-coumarate 3-hydroxylase activity (GO:0046409);; Biological Process: positive regulation of organ growth (GO:0046622);; Biological Process: seed development (GO:0048316);; Biological Process: carpel morphogenesis (GO:0048445);; Biological Process: regulation of timing of organ formation (GO:0048504);; Biological Process: positive regulation of cell division (GO:0051781);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to iron ion (GO:0071281);; "	--	Cytochrome P450 78A6 GN=T3A4.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si029773m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	hypothetical protein SORBIDRAFT_2967s002010 [Sorghum bicolor] 
comp226641_c0	1.56E-05	-2.636149756	down	--	--	--	--	Myb family transcription factor APL GN=APL OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si014218m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb family transcription factor APL-like [Setaria italica]
comp184020_c0	1.92E-12	3.740960585	up	--	--	--	--	--	Putative uncharacterized protein Sb03g010460 GN=Sb03g010460 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g010460 [Sorghum bicolor] 
comp200313_c4	4.99E-09	-4.006394506	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: sterigmatocystin biosynthetic process (GO:0045461);; Biological Process: emericellamide biosynthetic process (GO:1900557);; Biological Process: o-orsellinic acid biosynthetic process (GO:1900584);; Biological Process: monodictyphenone biosynthetic process (GO:1900815);; "	--	--	Predicted protein GN=POPTRDRAFT_795385 OS=Populus trichocarpa (Western balsam poplar) PE=4 SV=1	PksA [Aspergillus nomius]
comp197112_c0	0.006083713	-2.044292438	down	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: response to water stimulus (GO:0009415);; "	--	Dehydrin DHN2 GN=DHN2 OS=Hordeum vulgare (Barley) PE=2 SV=1	Dehydrin DHN2 GN=F775_26784 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	Dehydrin DHN2 [Aegilops tauschii]
comp216918_c1	2.51E-07	3.706101249	up	[J]	Translation, ribosomal structure and biogenesis 	"Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: DNA-dependent transcription, elongation (GO:0006354);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translational elongation (GO:0006414);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: chloroplast relocation (GO:0009902);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Cellular Component: apoplast (GO:0048046);; Biological Process: ovule development (GO:0048481);; Biological Process: response to stimulus (GO:0050896);; "	K02355|0.0|ota:Ot07g04420|Elongation factor G, chloroplast precursor (ISS)	Elongation factor G, chloroplastic (Precursor) GN=FUSA OS=Glycine max (Soybean) PE=1 SV=1	Uncharacterized protein GN=OB04G27110 OS=Oryza brachyantha PE=3 SV=1	hypothetical protein OsI_16800 [Oryza sativa Indica Group]
comp208933_c0	0.000377173	2.244076826	up	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of cellular macromolecule biosynthetic process (GO:2000112);; "	--	--	Putative uncharacterized protein Sb04g034290 GN=Sb04g034290 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g034290 [Sorghum bicolor] 
comp218571_c0	0.000399637	2.744237296	up	--	--	"Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb03g005430 GN=Sb03g005430 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g005430 [Sorghum bicolor] 
comp222906_c0	0.00013197	3.699107811	up	[L]	Replication, recombination and repair 	--	--	--	Transposase, putative GN=PI35.0370c OS=Phytophthora infestans (Potato late blight fungus) PE=4 SV=1	putative Tc1-mariner class transposase [Aspergillus niger]
comp207416_c1	0.000283869	3.349657084	up	--	--	--	K11548|5e-13|cme:CMB012C|similar to spindle pole body associated protein	WEB family protein At5g16730, chloroplastic (Precursor) GN=At5g16730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Kinetochore protein Nuf2 GN=Gasu_00260 OS=Galdieria sulphuraria (Red alga) PE=4 SV=1	kinetochore protein Nuf2 [Galdieria sulphuraria]
comp215940_c0	3.43E-07	2.83129959	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: response to lipid (GO:0033993);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	ZF-HD homeobox protein At4g24660 GN=At4g24660 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g010020 GN=Sb01g010020 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: ZF-HD homeobox protein At4g24660-like [Setaria italica]
comp220491_c0	0.005964358	1.938671306	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: thioredoxin-disulfide reductase activity (GO:0004791);; Molecular Function: enzyme activator activity (GO:0008047);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: plastid organization (GO:0009657);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: regulation of chlorophyll biosynthetic process (GO:0010380);; Biological Process: regulation of starch biosynthetic process (GO:0010581);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (GO:0016671);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: electron transport chain (GO:0022900);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: small molecule metabolic process (GO:0044281);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: regulation of cellular process (GO:0050794);; "	K00384|1e-104|osa:4344159|Os07g0657900	Thioredoxin reductase NTRC (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2	Thioredoxin reductase OS=Oryza glaberrima (African rice) PE=3 SV=1	hypothetical protein OsI_27178 [Oryza sativa Indica Group]
comp225736_c0	6.00E-15	4.095458372	up	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Biological Process: vacuole organization (GO:0007033);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: proanthocyanidin biosynthetic process (GO:0010023);; Biological Process: organ senescence (GO:0010260);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	--	Protein SRG1 GN=SRG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si001876m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: leucoanthocyanidin dioxygenase-like isoform X1 [Setaria italica] 
comp174749_c0	0.000142316	-2.360636502	down	[T]	Signal transduction mechanisms 	"Biological Process: immune system process (GO:0002376);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein glycosylation (GO:0006486);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to chitin (GO:0010200);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: amino acid import (GO:0043090);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	Zinc finger CCCH domain-containing protein 33 GN=OSJNBa0056I11.7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp169635_c0	6.81E-07	2.695758064	up	[RTKL]	--	"Molecular Function: guanylate cyclase activity (GO:0004383);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cGMP biosynthetic process (GO:0006182);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: chromosome segregation (GO:0007059);; Biological Process: meiosis I (GO:0007127);; Biological Process: response to cold (GO:0009409);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to salt stress (GO:0009651);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: xylan metabolic process (GO:0045491);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: chromosome organization (GO:0051276);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	Calmodulin-binding receptor-like cytoplasmic kinase 2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Nodulation receptor kinase OS=Zea mays (Maize) PE=2 SV=1	nodulation receptor kinase [Zea mays] 
comp213127_c1	0.005146143	2.295079812	up	--	--	--	--	--	--	--
comp194123_c0	0.009394504	1.893516767	up	--	--	--	--	--	Uncharacterized protein GN=Si002320m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp221666_c0	8.71E-06	3.589753826	up	--	--	--	--	Extensin (Precursor) GN=HRGPNT3 OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1	Putative uncharacterized protein Sb03g034040 GN=Sb03g034040 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g034040 [Sorghum bicolor] 
comp205464_c0	0.00042799	-4.099546134	down	--	--	--	--	--	--	--
comp222151_c0	0.003585729	-1.961316088	down	--	--	"Cellular Component: cytosol (GO:0005829);; Biological Process: toxin catabolic process (GO:0009407);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: abscisic acid glucosyltransferase activity (GO:0010294);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Molecular Function: flavonol 3-O-glucosyltransferase activity (GO:0047893);; Molecular Function: trans-zeatin O-beta-D-glucosyltransferase activity (GO:0050403);; Molecular Function: cis-zeatin O-beta-D-glucosyltransferase activity (GO:0050502);; Biological Process: flavonol biosynthetic process (GO:0051555);; Biological Process: response to other organism (GO:0051707);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; "	--	UDP-glycosyltransferase 73C5 GN=F13K3.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb10g007920 GN=Sb10g007920 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: UDP-glycosyltransferase 73D1-like [Setaria italica]
comp213268_c0	0.006255885	-1.897122651	down	--	--	"Biological Process: transport (GO:0006810);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Non-specific lipid-transfer protein 2 (Precursor) GN=LTP-2 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Uncharacterized protein (Fragment) GN=Si025051m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: non-specific lipid-transfer protein 2-like [Setaria italica]
comp216981_c0	2.75E-05	2.357198037	up	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; "	--	Classical arabinogalactan protein 9 (Precursor) GN=AGP9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si016446m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cell wall protein AWA1-like [Setaria italica]
comp231546_c0	0.000100647	2.244858641	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: response to stress (GO:0006950);; Biological Process: signal transduction (GO:0007165);; Biological Process: pollen development (GO:0009555);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: homogalacturonan biosynthetic process (GO:0010289);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity (GO:0047262);; Cellular Component: pollen tube (GO:0090406);; "	K13648|0.0|sbi:SORBI_04g020140|hypothetical protein	Galacturonosyltransferase 8 GN=MJL12.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016867m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_252708 [Zea mays]
comp235354_c0	0.003004478	-1.911801423	down	--	--	"Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Biological Process: apoptotic process (GO:0006915);; Biological Process: defense response (GO:0006952);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: cell part (GO:0044464);; "	--	Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si013130m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: disease resistance protein RPM1-like [Setaria italica]
comp220775_c0	6.05E-06	-2.866914883	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Putative uncharacterized protein Sb06g031550 GN=Sb06g031550 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101767410 [Setaria italica]
comp213837_c0	5.72E-05	2.688015255	up	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Non-specific lipid-transfer protein-like protein At5g64080 (Precursor) GN=At5g64080 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si024696m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: inverted formin-2-like [Setaria italica]
comp130084_c0	1.83E-05	2.435342069	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to bacterium (GO:0009617);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: gametophyte development (GO:0048229);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: specification of floral organ number (GO:0048833);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: cell wall organization (GO:0071555);; Molecular Function: polygalacturonase inhibitor activity (GO:0090353);; "	--	Polygalacturonase inhibitor (Precursor) GN=PGIP OS=Pyrus communis (Pear) PE=1 SV=1	Polygalacturonase inhibitor GN=ZEAMMB73_814954 OS=Zea mays (Maize) PE=4 SV=1	polygalacturonase inhibitor [Zea mays]
comp162966_c0	6.30E-06	2.488132515	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	Protein IDA-LIKE 2 (Precursor) GN=IDL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si018630m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein IDA-LIKE 2-like [Setaria italica]
comp219136_c1	0.006483992	1.979378718	up	--	--	"Biological Process: defense response to insect (GO:0002213);; Molecular Function: chitinase activity (GO:0004568);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: chitin catabolic process (GO:0006032);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	Chitin-binding lectin 1 (Precursor) OS=Solanum tuberosum (Potato) PE=1 SV=2	Putative uncharacterized protein Sb02g020880 GN=Sb02g020880 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_219344 [Zea mays]
comp132389_c0	0.000192241	2.352192425	up	--	--	--	--	--	--	--
comp229467_c0	0.000596925	-2.153947469	down	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: positive regulation of cellular biosynthetic process (GO:0031328);; "	K09422|4e-94|sbi:SORBI_07g003320|hypothetical protein	--	Uncharacterized protein GN=Si015546m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb-related protein Zm38-like [Setaria italica]
comp223344_c0	8.04E-08	2.874042669	up	--	--	"Biological Process: defense response (GO:0006952);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: ADP binding (GO:0043531);; "	K06685|3e-85|ppp:PHYPADRAFT_214279|hypothetical protein	MOB kinase activator-like 1 GN=At4g19045 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si038851m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: MOB kinase activator-like 1-like [Setaria italica]
comp224190_c2	0.006963498	-2.737393413	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: L-ascorbate oxidase activity (GO:0008447);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: regulation of hormone levels (GO:0010817);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: cellulose metabolic process (GO:0030243);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Cellular Component: anchored to plasma membrane (GO:0046658);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair elongation (GO:0048767);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cell wall organization (GO:0071555);; "	--	Monocopper oxidase-like protein SKS1 (Precursor) GN=SKS1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g035180 GN=Sb01g035180 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g035180 [Sorghum bicolor] 
comp229855_c1	3.65E-05	-2.668517082	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: response to molecule of fungal origin (GO:0002238);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to parasitic fungus (GO:0009623);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to UV-B (GO:0010224);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Biological Process: pollen exine formation (GO:0010584);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: endomembrane system (GO:0012505);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Cellular Component: protein complex (GO:0043234);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: protein autophosphorylation (GO:0046777);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: tapetal cell differentiation (GO:0048657);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: GTPase binding (GO:0051020);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: regulation of seedling development (GO:1900140);; "	--	Probable receptor-like serine/threonine-protein kinase At5g57670 GN=At5g57670 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	cDNA clone:001-202-H11, full insert sequence GN=P0550B04.14-1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os06g0693200 [Oryza sativa Japonica Group] 
comp206586_c0	0.00020956	2.153824861	up	[R]	General function prediction only 	"Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: adenyl nucleotide binding (GO:0030554);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: cell redox homeostasis (GO:0045454);; "	--	CBS domain-containing protein CBSX1, chloroplastic (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si031024m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Setaria italica]
comp229532_c0	3.25E-10	3.364267374	up	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: metabolic process (GO:0008152);; Cellular Component: chloroplast (GO:0009507);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: glucuronosyltransferase activity (GO:0015020);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: trans-zeatin O-beta-D-glucosyltransferase activity (GO:0050403);; Molecular Function: cis-zeatin O-beta-D-glucosyltransferase activity (GO:0050502);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	UDP-glycosyltransferase 85A2 GN=UGT85A2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si017045m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: UDP-glycosyltransferase 85A2-like [Setaria italica]
comp220488_c0	1.75E-06	-3.030701375	down	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: defense response (GO:0006952);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: plastid (GO:0009536);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to organic substance (GO:0010033);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Protein ASPARTIC PROTEASE IN GUARD CELL 2 (Precursor) GN=ASPG2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative nucleoid DNA-binding protein cnd41 GN=B1386G10.16 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	putative nucleoid DNA-binding protein cnd41 [Oryza sativa Japonica Group]
comp204952_c0	0.004146595	-1.957421116	down	--	--	"Molecular Function: transporter activity (GO:0005215);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to nematode (GO:0009624);; Biological Process: phloem transport (GO:0010233);; Biological Process: response to acidity (GO:0010447);; Molecular Function: nitrate efflux transmembrane transporter activity (GO:0010542);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: xylan metabolic process (GO:0045491);; "	--	Probable nitrate excretion transporter 2 GN=At3g45660 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative nitrite transporter GN=P0483G10.5 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: nitrate excretion transporter 1-like [Setaria italica]
comp170277_c0	0.00130686	2.590643623	up	--	--	--	--	--	Uncharacterized protein GN=Bra026037 OS=Brassica rapa subsp. pekinensis (Chinese cabbage) PE=4 SV=1	--
comp218200_c1	0.000336769	2.108370451	up	--	--	--	--	--	Uncharacterized protein GN=Si023530m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784834 [Setaria italica]
comp209622_c0	4.78E-05	2.349225585	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g025630 GN=Sb09g025630 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101782658 [Setaria italica]
comp133262_c1	0.000689374	-2.848123345	down	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Biological Process: ion transport (GO:0006811);; Biological Process: response to stress (GO:0006950);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to red light (GO:0010114);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: ion binding (GO:0043167);; Cellular Component: cell part (GO:0044464);; Biological Process: gibberellin catabolic process (GO:0045487);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: cellular response to stimulus (GO:0051716);; Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634);; Molecular Function: C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Gibberellin 2-beta-dioxygenase 2 GN=GA2OX2 OS=Pisum sativum (Garden pea) PE=2 SV=1	Uncharacterized protein GN=Si004358m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Setaria italica]
comp191040_c0	0.008885053	-2.696517016	down	--	--	"Molecular Function: binding (GO:0005488);; "	--	--	Uncharacterized protein GN=BRADI3G14460 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g046340 [Sorghum bicolor] 
comp205710_c2	0.001551938	-3.898823936	down	[GEPR]	--	"Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein folding (GO:0006457);; Biological Process: purine nucleobase transport (GO:0006863);; Molecular Function: sucrose:hydrogen symporter activity (GO:0008506);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: response to heat (GO:0009408);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: monosaccharide transmembrane transporter activity (GO:0015145);; Biological Process: nitrate transport (GO:0015706);; Biological Process: sucrose transport (GO:0015770);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: transmembrane transport (GO:0055085);; "	--	Sugar transport protein 5 GN=STP5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Sugar transport protein 5 GN=ZEAMMB73_520653 OS=Zea mays (Maize) PE=3 SV=1	PREDICTED: sugar transport protein 5-like [Setaria italica]
comp223712_c0	0.003243	2.153499483	up	--	--	--	--	Cold-regulated protein 1 (Fragment) OS=Hordeum vulgare (Barley) PE=2 SV=2	Uncharacterized protein GN=Si022663m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein OsJ_18670 [Oryza sativa Japonica Group]
comp231684_c0	0.000838709	-2.114211226	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Biological Process: suberin biosynthetic process (GO:0010345);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: response to stimulus (GO:0050896);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 86A2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si009766m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 86A2-like [Setaria italica]
comp216195_c0	0.007956517	-1.823322481	down	--	--	--	--	--	--	--
comp217658_c0	1.36E-05	2.430471683	up	--	--	"Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: defense response (GO:0006952);; Molecular Function: chitin binding (GO:0008061);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: somatic embryogenesis (GO:0010262);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; Cellular Component: apoplast (GO:0048046);; Biological Process: defense response to fungus (GO:0050832);; "	K01183|1e-177|zma:100284387|endochitinase PR4	Chitinase 6 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	endochitinase PR4 precursor [Zea mays] 
comp213465_c0	0.003060841	1.956782544	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	--	--	Homeodomain protein JUBEL1 OS=Zea mays (Maize) PE=2 SV=1	TPA: putative POX domain/homeobox DNA-binding domain family protein [Zea mays]
comp212199_c0	1.02E-05	-3.4921463	down	--	--	--	--	--	Putative uncharacterized protein Sb09g004920 GN=Sb09g004920 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g004920 [Sorghum bicolor] 
comp226451_c0	0.000486692	2.182549429	up	--	--	"Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: galactose metabolic process (GO:0006012);; Biological Process: pollen development (GO:0009555);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: xyloglucan biosynthetic process (GO:0009969);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: rhamnogalacturonan I biosynthetic process (GO:0010246);; Biological Process: rhamnogalacturonan II biosynthetic process (GO:0010306);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: arabinose biosynthetic process (GO:0019567);; Cellular Component: Golgi cisterna membrane (GO:0032580);; Biological Process: UDP-L-arabinose biosynthetic process (GO:0033358);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: capsule polysaccharide biosynthetic process (GO:0045227);; Molecular Function: protein dimerization activity (GO:0046983);; Molecular Function: UDP-arabinose 4-epimerase activity (GO:0050373);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: defense response by callose deposition (GO:0052542);; "	K12448|0.0|osa:4342364|Os07g0139400	Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si029946m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable UDP-arabinose 4-epimerase 1-like [Setaria italica]
comp216782_c0	0.001471999	1.962026339	up	[M]	Cell wall/membrane/envelope biogenesis 	--	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100192463 [Zea mays] 
comp210368_c0	0.003213891	2.06272457	up	[S]	Function unknown 	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: chromatin assembly or disassembly (GO:0006333);; Biological Process: water transport (GO:0006833);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to cold (GO:0009409);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: defense response to fungus (GO:0050832);; "	--	Protein Ric1 GN=RIC1 OS=Phytophthora infestans (Potato late blight fungus) PE=3 SV=1	Uncharacterized protein GN=PYU1_G009728 OS=Pythium ultimum PE=4 SV=1	RecName: Full=Protein Ric1 
comp180235_c1	1.69E-05	-3.432271901	down	--	--	"Cellular Component: cytosol (GO:0005829);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to organic substance (GO:0010033);; Molecular Function: abscisic acid glucosyltransferase activity (GO:0010294);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Biological Process: secretion by cell (GO:0032940);; Molecular Function: flavonol 3-O-glucosyltransferase activity (GO:0047893);; Molecular Function: trans-zeatin O-beta-D-glucosyltransferase activity (GO:0050403);; Molecular Function: cis-zeatin O-beta-D-glucosyltransferase activity (GO:0050502);; Biological Process: flavonol biosynthetic process (GO:0051555);; Biological Process: response to other organism (GO:0051707);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; "	--	"Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora (Clustered gentian) PE=1 SV=1"	Uncharacterized protein GN=Si021874m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	"PREDICTED: anthocyanin 3'-O-beta-glucosyltransferase-like [Setaria italica]"
comp215269_c0	1.36E-05	3.40312312	up	--	--	--	--	--	--	hypothetical protein M569_04743, partial [Genlisea aurea]
comp219033_c2	7.04E-08	2.880761734	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: osmosensory signaling pathway (GO:0007231);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to nitrate (GO:0010167);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: NAD(P)H oxidase activity (GO:0016174);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Respiratory burst oxidase homolog protein B OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative uncharacterized protein Sb08g017240 GN=Sb08g017240 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g017240 [Sorghum bicolor] 
comp212202_c0	8.51E-06	-2.568061264	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: water transport (GO:0006833);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: xylem development (GO:0010089);; Biological Process: seed coat development (GO:0010214);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|0.0|zma:542685|cesa10, ZmCESA10	Cellulose synthase A catalytic subunit 7 [UDP-forming] GN=OSJNBa0006L06.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Cellulose synthase catalytic subunit 10 GN=CesA10 OS=Zea mays (Maize) PE=2 SV=1	cellulose synthase10 [Zea mays] 
comp391896_c0	6.94E-05	-2.835478919	down	--	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: electron transport chain (GO:0022900);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Early nodulin-20 (Precursor) GN=ENOD20 OS=Medicago truncatula (Barrel medic) PE=3 SV=1	Uncharacterized protein GN=Si004117m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: blue copper protein-like [Setaria italica]
comp226409_c0	0.001657253	-2.227879828	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular organelle (GO:0043229);; Cellular Component: anchored to plasma membrane (GO:0046658);; "	--	Uncharacterized GPI-anchored protein At4g28100 (Precursor) GN=At4g28100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g036230 GN=Sb02g036230 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g036230 [Sorghum bicolor] 
comp219956_c0	0.00569658	-1.82722159	down	--	--	"Biological Process: regionalization (GO:0003002);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: tropism (GO:0009606);; Biological Process: tissue development (GO:0009888);; Biological Process: flower development (GO:0009908);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: organ development (GO:0048513);; Biological Process: developmental cell growth (GO:0048588);; Biological Process: phyllome development (GO:0048827);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	BTB/POZ domain-containing protein At1g67900 GN=At1g67900 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016617m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Setaria italica]
comp201458_c0	0.002055289	2.676939003	up	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: MAPK cascade (GO:0000165);; Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: regulation of long-day photoperiodism, flowering (GO:0048586);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: root hair elongation (GO:0048767);; Biological Process: pollen tube development (GO:0048868);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: transmembrane receptor protein serine/threonine kinase binding (GO:0070696);; "	--	U-box domain-containing protein 15 GN=PUB15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si015737m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 15-like [Setaria italica]
comp122876_c0	0.000152772	-3.771711761	down	--	--	--	--	DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb05g022870 GN=Sb05g022870 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g022870 [Sorghum bicolor] 
comp234561_c2	0.006077098	1.799818648	up	--	--	--	--	--	--	--
comp228428_c1	2.99E-05	-2.50698582	down	[RTKL]	--	"Biological Process: transition metal ion transport (GO:0000041);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: endosperm development (GO:0009960);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: response to chitin (GO:0010200);; Biological Process: proline transport (GO:0015824);; Molecular Function: kinase activity (GO:0016301);; Biological Process: xylan metabolic process (GO:0045491);; "	--	Probable receptor-like protein kinase At1g33260 GN=At1g33260 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb01g017150 GN=Sb01g017150 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g017150 [Sorghum bicolor] 
comp219240_c2	0.000132191	2.403182757	up	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: negative regulation of defense response (GO:0031348);; "	--	--	Brassinosteroid insensitive 1 (Fragment) OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	brassinosteroid insensitive 1 precursor [Oryza sativa Indica Group]
comp225984_c0	2.75E-05	2.353202778	up	--	--	"Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: protein glycosylation (GO:0006486);; Biological Process: microtubule nucleation (GO:0007020);; Molecular Function: galactosyltransferase activity (GO:0008378);; Biological Process: arabinogalactan protein metabolic process (GO:0010405);; Cellular Component: endomembrane system (GO:0012505);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: protein O-linked glycosylation via hydroxyproline (GO:0018258);; Molecular Function: carbohydrate binding (GO:0030246);; Molecular Function: UDP-galactosyltransferase activity (GO:0035250);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Probable beta-1,3-galactosyltransferase 18 GN=B3GALT18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si034678m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable beta-1,3-galactosyltransferase 19-like [Setaria italica]
comp128009_c0	0.000877908	3.4408794	up	--	--	--	--	--	--	--
comp130691_c0	0.001555024	2.715923635	up	[R]	General function prediction only 	"Molecular Function: binding (GO:0005488);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: tissue development (GO:0009888);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cellular component organization (GO:0016043);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: organ development (GO:0048513);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: developmental growth (GO:0048589);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Uncharacterized zinc finger protein At4g06634 GN=At4g06634 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) GN=Bathy17g00740 OS=Bathycoccus prasinos PE=4 SV=1	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein [Bathycoccus prasinos]
comp231619_c1	0.002495711	-1.93512331	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of fungal origin (GO:0002238);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to bacterium (GO:0009617);; Biological Process: plastid organization (GO:0009657);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: RNA metabolic process (GO:0016070);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: positive regulation of programmed cell death (GO:0043068);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: protein autoubiquitination (GO:0051865);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si020160m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Setaria italica]
comp215250_c0	6.69E-07	-3.245343812	down	--	--	"Molecular Function: phospholipid binding (GO:0005543);; Cellular Component: cell part (GO:0044464);; "	--	Proline-rich receptor-like protein kinase PERK9 GN=PERK9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si001648m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765556 [Setaria italica]
comp234876_c0	9.48E-07	2.785867229	up	[L]	Replication, recombination and repair 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: chromatin assembly or disassembly (GO:0006333);; Biological Process: proteolysis (GO:0006508);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: nickel cation binding (GO:0016151);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; "	--	"RNA-directed DNA polymerase homolog OS=Oenothera berteriana (Bertero's evening primrose) PE=4 SV=1"	Retrotransposon protein, putative, unclassified, expressed GN=LOC_Os12g24050 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774267 [Setaria italica]
comp227828_c0	0.007824043	-1.967476203	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein GN=OsI_04254 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101773811 [Setaria italica]
comp215530_c0	0.004056747	1.814272022	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein folding (GO:0006457);; Biological Process: iron ion transport (GO:0006826);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to heat (GO:0009408);; Biological Process: pollen development (GO:0009555);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to chitin (GO:0010200);; Biological Process: nitrate transport (GO:0015706);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response to virus (GO:0051607);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; "	--	WRKY transcription factor 22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g009800 GN=Sb04g009800 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g009800 [Sorghum bicolor] 
comp176328_c0	1.62E-05	3.958124955	up	--	--	--	--	--	--	--
comp211482_c0	0.005465622	-2.045575905	down	--	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: vacuolar lumen (GO:0005775);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: aureusidin synthase activity (GO:0033793);; Biological Process: pigment biosynthetic process (GO:0046148);; "	--	Polyphenol oxidase, chloroplastic (Precursor) OS=Malus domestica (Apple) PE=2 SV=1	Uncharacterized protein GN=BRADI2G52260 OS=Brachypodium distachyon (Purple false brome) PE=3 SV=1	PREDICTED: polyphenol oxidase, chloroplastic-like [Brachypodium distachyon]
comp235358_c0	0	5.722522559	up	--	--	--	--	Glutenin, low molecular weight subunit (Precursor) OS=Triticum aestivum (Wheat) PE=3 SV=1	Putative omega-gliadin (Fragment) GN=gli OS=Triticum aestivum (Wheat) PE=2 SV=2	putative omega-gliadin [Triticum aestivum]
comp194722_c0	5.90E-07	2.775829129	up	--	--	--	--	Formin-like protein 6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	cDNA clone:002-175-D05, full insert sequence GN=P0699H05.13 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os01g0795600 [Oryza sativa Japonica Group] 
comp215181_c1	0.001588746	1.975325617	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=F775_18569 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_18569 [Aegilops tauschii]
comp216096_c0	0.005864271	1.985142588	up	--	--	"Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: negative regulation of cell proliferation (GO:0008285);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: pollen sperm cell differentiation (GO:0048235);; "	--	Cell number regulator 10 GN=CNR10 OS=Zea mays (Maize) PE=2 SV=1	Putative uncharacterized protein Sb01g002350 GN=Sb01g002350 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: cell number regulator 10-like [Setaria italica]
comp225087_c0	7.69E-08	2.87616734	up	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: RNA metabolic process (GO:0016070);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein Sb03g041028 (Fragment) GN=Sb03g041028 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor ABR1-like [Setaria italica]
comp233854_c2	0.000549301	2.646033304	up	--	--	--	--	--	--	--
comp255042_c0	0.007857456	-1.783837278	down	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: cellular process (GO:0009987);; Biological Process: gene expression (GO:0010467);; Cellular Component: nuclear lumen (GO:0031981);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_734162 OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp201567_c0	0.000702276	2.01875289	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: regulation of gibberellin biosynthetic process (GO:0010371);; Biological Process: cell growth (GO:0016049);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: regulation of timing of transition from vegetative to reproductive phase (GO:0048510);; Biological Process: defense response to fungus (GO:0050832);; "	--	Ethylene-responsive transcription factor ERF025 GN=ERF025 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si011086m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor ERF025-like isoform X1 [Setaria italica]
comp216791_c0	0.000522973	2.054450565	up	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Biological Process: cell growth (GO:0016049);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: root development (GO:0048364);; Biological Process: cell development (GO:0048468);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Cellular Component: cell periphery (GO:0071944);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 3 (Precursor) GN=PEX3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=OB04G19490 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein OsI_15861 [Oryza sativa Indica Group]
comp232528_c0	1.44E-08	3.027073846	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: cell growth (GO:0016049);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: petal development (GO:0048441);; Biological Process: stamen development (GO:0048443);; Biological Process: root hair initiation (GO:0048766);; Biological Process: root hair cell development (GO:0080147);; Biological Process: positive regulation of brassinosteroid biosynthetic process (GO:2000488);; "	--	Transcription factor bHLH128 GN=T20M3.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si001123m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor bHLH128-like [Setaria italica]
comp195217_c0	0	4.494111737	up	[P]	Inorganic ion transport and metabolism 	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: NADPH dehydrogenase activity (GO:0003959);; Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytosol (GO:0005829);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: rRNA processing (GO:0006364);; Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: poly(U) RNA binding (GO:0008266);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: plastid organization (GO:0009657);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: photosynthetic electron transport in photosystem I (GO:0009773);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Cellular Component: cyanelle (GO:0009842);; Biological Process: photorespiration (GO:0009853);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to chitin (GO:0010200);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: photosynthesis (GO:0015979);; Biological Process: heterocycle biosynthetic process (GO:0018130);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: electron transport chain (GO:0022900);; Biological Process: negative regulation of defense response (GO:0031348);; Cellular Component: thylakoid lumen (GO:0031977);; Cellular Component: thylakoid membrane (GO:0042651);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: cellular nitrogen compound biosynthetic process (GO:0044271);; Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156);; Molecular Function: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity (GO:0045157);; Cellular Component: apoplast (GO:0048046);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: NADP binding (GO:0050661);; "	K02641|0.0|osa:4334338|Os03g0784700	Ferredoxin--NADP reductase, root isozyme, chloroplastic (Precursor) GN=OSJNBb0093E13.2 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	cDNA clone:001-015-G11, full insert sequence GN=OsJ_12850 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os03g0784700 [Oryza sativa Japonica Group] 
comp229982_c1	0.000638437	2.684747345	up	--	--	"Cellular Component: plastid (GO:0009536);; "	--	--	Putative uncharacterized protein Sb06g017270 GN=Sb06g017270 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_06g017270 [Sorghum bicolor] 
comp220964_c1	3.00E-10	3.321638927	up	[GEPR]	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: hexose transport (GO:0008645);; Cellular Component: plastid (GO:0009536);; Biological Process: seed germination (GO:0009845);; Molecular Function: hexose transmembrane transporter activity (GO:0015149);; Molecular Function: solute:hydrogen symporter activity (GO:0015295);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: shoot development (GO:0048367);; Biological Process: positive regulation of post-embryonic development (GO:0048582);; Biological Process: response to stimulus (GO:0050896);; Biological Process: transmembrane transport (GO:0055085);; Cellular Component: pollen tube (GO:0090406);; "	--	Polyol transporter 5 GN=PLT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=3 SV=1	Os11g0637200 [Oryza sativa Japonica Group] 
comp222230_c0	0.005961261	-1.824032693	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: hormone biosynthetic process (GO:0042446);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 734A6 GN=OSJNBb0008D07.26 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si035185m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 734A6-like [Setaria italica]
comp127041_c0	3.00E-05	4.289476777	up	--	--	--	--	--	--	--
comp215181_c0	6.49E-05	2.412067063	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein GN=Si001624m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein notum homolog [Brachypodium distachyon]
comp132298_c0	2.86E-08	-3.837351494	down	--	--	--	--	--	Uncharacterized protein GN=Si030119m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770761 [Setaria italica]
comp162566_c0	0.003420383	1.88206021	up	--	--	--	--	--	Putative uncharacterized protein Sb10g031130 GN=Sb10g031130 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g031130 [Sorghum bicolor] 
comp212672_c1	0.000363434	-2.559371733	down	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: gene silencing (GO:0016458);; Biological Process: covalent chromatin modification (GO:0016569);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: shoot development (GO:0048367);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	Probable glucan endo-1,3-beta-glucosidase A6 (Precursor) GN=A6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb01g001430 GN=Sb01g001430 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g001430 [Sorghum bicolor] 
comp227912_c0	0.004177371	1.876236892	up	--	--	"Molecular Function: fatty acid binding (GO:0005504);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: fatty acid metabolic process (GO:0006631);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: intramolecular lyase activity (GO:0016872);; "	--	Fatty-acid-binding protein 2 GN=FAP2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si006495m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: fatty-acid-binding protein 2-like isoform X1 [Setaria italica] 
comp218307_c0	9.22E-06	-2.672190734	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Molecular Function: protein binding (GO:0005515);; Biological Process: RNA processing (GO:0006396);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to UV-B (GO:0010224);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to stimulus (GO:0050896);; "	--	F-box protein AFR GN=F25P17.16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb10g026080 GN=Sb10g026080 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: F-box protein AFR-like [Setaria italica]
comp229799_c1	1.28E-05	2.509066995	up	--	--	"Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: plastid (GO:0009536);; Biological Process: suberin biosynthetic process (GO:0010345);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: heme binding (GO:0020037);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; Molecular Function: ion binding (GO:0043167);; Biological Process: macromolecule metabolic process (GO:0043170);; Cellular Component: membrane part (GO:0044425);; Biological Process: oxidation-reduction process (GO:0055114);; Cellular Component: cell periphery (GO:0071944);; "	--	Cytochrome P450 94A2 GN=CYP94A2 OS=Vicia sativa (Spring vetch) PE=2 SV=1	Uncharacterized protein GN=Si009906m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 94A1-like [Setaria italica]
comp129722_c0	0.002233649	1.88558301	up	--	--	--	--	Formin-like protein 4 (Precursor) GN=OSJNBb0078C13.8 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Uncharacterized protein GN=Si023341m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101785352 [Setaria italica]
comp223011_c0	2.09E-06	2.633496593	up	--	--	--	--	--	--	--
comp198603_c0	0.001746264	-2.459167834	down	--	--	--	--	--	Uncharacterized protein GN=Si009725m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp228310_c0	4.19E-05	-2.626248787	down	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	CRIB domain-containing protein RIC1 GN=RIC1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si007380m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774732 isoform X3 [Setaria italica]
comp182149_c0	0.004658899	2.232336452	up	--	--	"Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: sugar transmembrane transporter activity (GO:0051119);; "	--	Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Uncharacterized protein GN=Si002271m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: bidirectional sugar transporter SWEET6a-like [Setaria italica]
comp226283_c0	0.000429033	-2.374664415	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Biological Process: tRNA processing (GO:0008033);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: AMP dimethylallyltransferase activity (GO:0009824);; Biological Process: gene expression (GO:0010467);; Biological Process: RNA metabolic process (GO:0016070);; Biological Process: regulation of cellular process (GO:0050794);; Molecular Function: ATP dimethylallyltransferase activity (GO:0052622);; Molecular Function: ADP dimethylallyltransferase activity (GO:0052623);; Biological Process: purine-containing compound biosynthetic process (GO:0072522);; "	K10760|0.0|sbi:SORBI_01g003950|hypothetical protein	Adenylate isopentenyltransferase 5, chloroplastic (Precursor) GN=IPT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si039092m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Setaria italica]
comp221985_c0	9.48E-09	4.733936479	up	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	K11291|3e-24|vcn:VOLCADRAFT_108214|hypothetical protein	Protein ycf2 (Fragment) GN=ycf2 OS=Oenothera picensis (Evening primrose) PE=3 SV=1	Uncharacterized protein GN=PGSC0003DMG400046004 OS=Solanum tuberosum (Potato) PE=4 SV=1	SHNi TPR [Tremella fuciformis]
comp228845_c1	0.000699772	2.018978575	up	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nitric oxide biosynthetic process (GO:0006809);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: response to symbiotic fungus (GO:0009610);; Molecular Function: nitrate reductase (NADH) activity (GO:0009703);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: molybdenum ion binding (GO:0030151);; Biological Process: nitrate assimilation (GO:0042128);; Molecular Function: ADP binding (GO:0043531);; Molecular Function: molybdopterin cofactor binding (GO:0043546);; Biological Process: cellular lipid catabolic process (GO:0044242);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: nitrate reductase [NAD(P)H] activity (GO:0050463);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; "	K00360|0.0|osa:4345795|Os08g0468100	Nitrate reductase [NADH] 1 GN=P0470B03.25 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=3	Nitrate reductase GN=NR1 OS=Zea mays (Maize) PE=3 SV=1	nitrate reductase [Zea mays]
comp231257_c1	7.01E-08	2.877946811	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: phosphoric diester hydrolase activity (GO:0008081);; Cellular Component: plastid (GO:0009536);; Biological Process: pollen development (GO:0009555);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to salt stress (GO:0009651);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: amino acid import (GO:0043090);; Biological Process: post-translational protein modification (GO:0043687);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to osmotic stress (GO:0071470);; "	--	Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os05g0437900 [Oryza sativa Japonica Group] 
comp228436_c0	0.001768533	1.929323943	up	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: epidermis development (GO:0008544);; Biological Process: response to UV (GO:0009411);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Cellular Component: membrane (GO:0016020);; Biological Process: cell differentiation (GO:0030154);; Biological Process: response to lipid (GO:0033993);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: developmental growth (GO:0048589);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: anther development (GO:0048653);; Cellular Component: cell periphery (GO:0071944);; Molecular Function: organic cyclic compound binding (GO:0097159);; Biological Process: response to alcohol (GO:0097305);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At1g14390 (Precursor) GN=At1g14390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si005910m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390-like [Setaria italica]
comp157921_c0	3.60E-05	-2.620849149	down	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: tryptophan metabolic process (GO:0006568);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: negative regulation of gibberellic acid mediated signaling pathway (GO:0009938);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: protein metabolic process (GO:0019538);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: indole-containing compound biosynthetic process (GO:0042435);; Biological Process: hyperosmotic salinity response (GO:0042538);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Biological Process: regulation of primary metabolic process (GO:0080090);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; "	--	DELLA protein GAI1 GN=GAI1 OS=Vitis vinifera (Grape) PE=2 SV=1	Uncharacterized protein GN=Si000959m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: DELLA protein GAI1-like [Setaria italica]
comp217150_c0	0.000444256	-2.143383808	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to stimulus (GO:0050896);; "	--	--	Putative uncharacterized protein Sb10g013000 GN=Sb10g013000 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g013000 [Sorghum bicolor] 
comp227556_c0	4.06E-07	2.734358573	up	--	--	--	--	--	Beta-hexosaminidase (Fragment) OS=Oryza glaberrima (African rice) PE=3 SV=1	hypothetical protein AURANDRAFT_70635, partial [Aureococcus anophagefferens]
comp236502_c0	9.83E-05	2.275044706	up	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to nutrient (GO:0007584);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: potassium ion import (GO:0010107);; Biological Process: stomatal movement (GO:0010118);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: phosphorylation (GO:0016310);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: response to nutrient levels (GO:0031667);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	CBL-interacting protein kinase 23 GN=OJ1027_G06.32 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	TPA: putative CBL-interacting protein kinase family protein [Zea mays]
comp225249_c0	0.006358902	-2.111678677	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; "	--	--	Putative uncharacterized protein Sb08g019210 GN=Sb08g019210 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g019210 [Sorghum bicolor] 
comp218830_c0	0.001904832	1.979026531	up	[RTKL]	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Cellular Component: internal side of plasma membrane (GO:0009898);; Biological Process: suspensor development (GO:0010098);; Biological Process: positive regulation of intracellular protein kinase cascade (GO:0010740);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: localization (GO:0051179);; Biological Process: zygote elongation (GO:0080159);; "	K14500|0.0|sbi:SORBI_01g048160|hypothetical protein	Probable serine/threonine-protein kinase At4g35230 GN=At4g35230 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g048160 GN=Sb01g048160 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g048160 [Sorghum bicolor] 
comp196891_c0	1.12E-12	3.739566336	up	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: amino acid transport (GO:0006865);; Biological Process: epidermis development (GO:0008544);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to bacterium (GO:0009617);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: meristem maintenance (GO:0010073);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: regulation of growth (GO:0040008);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: innate immune response (GO:0045087);; Biological Process: intracellular transport (GO:0046907);; Biological Process: floral organ development (GO:0048437);; Biological Process: floral whorl development (GO:0048438);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: developmental growth (GO:0048589);; Biological Process: phyllome development (GO:0048827);; Biological Process: specification of floral organ number (GO:0048833);; Biological Process: cellular macromolecule localization (GO:0070727);; Biological Process: cellular response to lipid (GO:0071396);; Biological Process: cell wall organization (GO:0071555);; Biological Process: organic substance metabolic process (GO:0071704);; Molecular Function: polygalacturonase inhibitor activity (GO:0090353);; "	--	Polygalacturonase inhibitor (Precursor) GN=PGIP OS=Pyrus communis (Pear) PE=1 SV=1	Polygalacturonase inhibitor GN=F775_21460 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	Polygalacturonase inhibitor [Aegilops tauschii]
comp210765_c0	3.13E-05	-2.672164365	down	[O]	Posttranslational modification, protein turnover, chaperones 	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si017386m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101764232 [Setaria italica]
comp139745_c0	9.19E-05	3.745636864	up	--	--	--	--	--	Uncharacterized protein GN=PGSC0003DMG400012064 OS=Solanum tuberosum (Potato) PE=4 SV=1	conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
comp216828_c0	0.001186685	1.969142094	up	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to stress (GO:0006950);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: response to chitin (GO:0010200);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: intrinsic to membrane (GO:0031224);; Biological Process: response to L-ascorbic acid (GO:0033591);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: response to cadmium ion (GO:0046686);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb06g026310 GN=Sb06g026310 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g026310 [Sorghum bicolor] 
comp200313_c3	1.39E-05	-4.574273254	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Biological Process: biosynthetic process (GO:0009058);; Molecular Function: transferase activity (GO:0016740);; "	--	--	Uncharacterized protein GN=COCSUDRAFT_47508 OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1	putative non-reducing polyketide synthase [Pertusaria amara]
comp195792_c1	0.000102015	-2.363407572	down	--	--	"Molecular Function: GDP-fucose transmembrane transporter activity (GO:0005457);; Molecular Function: UDP-galactose transmembrane transporter activity (GO:0005459);; Molecular Function: UDP-glucose transmembrane transporter activity (GO:0005460);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein glycosylation (GO:0006486);; Biological Process: cellular membrane fusion (GO:0006944);; Cellular Component: plastid (GO:0009536);; Biological Process: response to nematode (GO:0009624);; Biological Process: GDP-fucose transport (GO:0015783);; Biological Process: UDP-glucose transport (GO:0015786);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: UDP-galactose transmembrane transport (GO:0072334);; "	--	Uncharacterized membrane protein At1g06890 GN=At1g06890 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si010529m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized membrane protein At1g06890-like [Setaria italica]
comp218796_c0	2.82E-05	2.346820811	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: ATP-dependent peptidase activity (GO:0004176);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to light intensity (GO:0009642);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: PSII associated light-harvesting complex II catabolic process (GO:0010304);; Biological Process: regulation of chlorophyll biosynthetic process (GO:0010380);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Cellular Component: Tic complex (GO:0031897);; Biological Process: protein hexamerization (GO:0034214);; Biological Process: cellular response to heat (GO:0034605);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: transcription from plastid promoter (GO:0042793);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: protein import into chloroplast stroma (GO:0045037);; "	--	ATP-dependent Clp protease ATP-binding subunit clpA homolog GN=clpC OS=Cyanidium caldarium PE=3 SV=1	Putative uncharacterized protein Sb04g021960 GN=Sb04g021960 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g021960 [Sorghum bicolor] 
comp225192_c2	0.00010182	-3.351659376	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: lipid storage (GO:0019915);; Biological Process: response to freezing (GO:0050826);; "	--	B3 domain-containing protein LFL1 GN=B1142C05.32 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si004412m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101753534 [Setaria italica]
comp211707_c0	0.003697156	-2.706085961	down	--	--	--	--	--	Putative uncharacterized protein GN=OsI_15959 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	PREDICTED: serine/arginine repetitive matrix protein 2-like [Setaria italica]
comp130023_c1	1.22E-07	3.058451196	up	--	--	"Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: defense response (GO:0006952);; Biological Process: fatty acid catabolic process (GO:0009062);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to biotic stimulus (GO:0009607);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: regulation of seed germination (GO:0010029);; Molecular Function: abscisic acid binding (GO:0010427);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; "	K14496|9e-39|sbi:SORBI_04g008040|hypothetical protein	Abscisic acid receptor PYL2 GN=T19L18.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=TRIUR3_20204 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	hypothetical protein TRIUR3_20204 [Triticum urartu]
comp216189_c0	0.000809158	2.654056435	up	[E]	Amino acid transport and metabolism 	"Molecular Function: glutamate-ammonia ligase activity (GO:0004356);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: glutamine biosynthetic process (GO:0006542);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: aging (GO:0007568);; Biological Process: nitrogen fixation (GO:0009399);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to blue light (GO:0009637);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: ammonia assimilation cycle (GO:0019676);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: nitrate assimilation (GO:0042128);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; "	K01915|2e-27|osa:4333896|Os03g0712800	Glutamine synthetase cytosolic isozyme 1-3 GN=OSJNBb0033N16.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Glutamine synthetase OS=Lagenidium giganteum PE=2 SV=1	glutamine synthetase [Lagenidium giganteum]
comp168113_c0	5.64E-07	-3.26285284	down	--	--	"Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: protein glycosylation (GO:0006486);; Molecular Function: galactosyltransferase activity (GO:0008378);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Probable beta-1,3-galactosyltransferase 16 GN=B3GALT16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si008283m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: beta-1,3-galactosyltransferase 6-like [Setaria italica]
comp204333_c0	1.96E-05	3.255181108	up	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: cell part (GO:0044464);; "	--	CASP-like protein Sb05g019440 GN=Sb05g019440 OS=Sorghum bicolor (Sorghum) PE=2 SV=1	Uncharacterized protein GN=Si026910m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: CASP-like protein Sb05g019440-like [Setaria italica]
comp215475_c0	3.00E-09	4.37343289	up	--	--	"Cellular Component: membrane (GO:0016020);; "	--	--	Uncharacterized protein GN=Si007500m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101767039 [Setaria italica]
comp228940_c1	0.000727639	-2.235206462	down	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: transmembrane receptor protein serine/threonine kinase binding (GO:0070696);; "	--	U-box domain-containing protein 38 GN=PUB38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si029391m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 39-like [Setaria italica]
comp196737_c0	2.38E-07	-2.92684001	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Biological Process: isoflavonoid biosynthetic process (GO:0009717);; Biological Process: flavonoid metabolic process (GO:0009812);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Molecular Function: 2-hydroxyisoflavanone synthase activity (GO:0033770);; Biological Process: pigment metabolic process (GO:0042440);; Biological Process: cellular lipid metabolic process (GO:0044255);; Biological Process: root development (GO:0048364);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 93A3 GN=CYP93A3 OS=Glycine max (Soybean) PE=2 SV=1	Uncharacterized protein GN=Si009775m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 93A3-like [Setaria italica]
comp212880_c0	0.000605591	2.037718442	up	--	--	--	--	--	Uncharacterized protein GN=Si007480m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765544 [Setaria italica]
comp200410_c0	0.000106063	2.214000978	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: defense response (GO:0006952);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xylan catabolic process (GO:0045493);; "	--	Xylanase inhibitor protein 1 (Precursor) GN=XIPI OS=Triticum aestivum (Wheat) PE=1 SV=2	Uncharacterized protein GN=OB06G23520 OS=Oryza brachyantha PE=4 SV=1	Os06g0356700 [Oryza sativa Japonica Group] 
comp165564_c0	0.001307981	-2.421817548	down	--	--	--	--	--	Uncharacterized protein GN=Si033360m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770229 [Setaria italica]
comp217183_c0	0.000285105	2.126994632	up	--	--	"Biological Process: cellular process (GO:0009987);; "	K13171|3e-08|rcu:RCOM_0733150|copper ion binding protein, putative	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=PYU1_G002855 OS=Pythium ultimum PE=4 SV=1	elicitin-like protein [Phytophthora brassicae] 
comp227093_c0	0.002459745	-1.94546488	down	[K]	Transcription 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to chitin (GO:0010200);; Biological Process: heat acclimation (GO:0010286);; Biological Process: cellular response to heat (GO:0034605);; Biological Process: cellular response to unfolded protein (GO:0034620);; Biological Process: response to hydrogen peroxide (GO:0042542);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to hypoxia (GO:0071456);; "	--	Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si002292m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: heat stress transcription factor C-1a-like [Setaria italica]
comp178769_c0	5.68E-07	2.7825971	up	[P]	Inorganic ion transport and metabolism 	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: carbonate dehydratase activity (GO:0004089);; Molecular Function: calcium-transporting ATPase activity (GO:0005388);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: one-carbon metabolic process (GO:0006730);; Biological Process: nucleotide transport (GO:0006862);; Biological Process: cellular zinc ion homeostasis (GO:0006882);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cellular membrane fusion (GO:0006944);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to nematode (GO:0009624);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to salt stress (GO:0009651);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Cellular Component: chloroplast inner membrane (GO:0009706);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: response to carbon dioxide (GO:0010037);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: ammonium transport (GO:0015696);; Biological Process: basic amino acid transport (GO:0015802);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Biological Process: regulation of ion transport (GO:0043269);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: anion homeostasis (GO:0055081);; Biological Process: calcium ion transmembrane transport (GO:0070588);; "	--	Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si034053m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: calcium-transporting ATPase 1, plasma membrane-type-like [Setaria italica]
comp204531_c3	0.001145116	2.459681299	up	[RTKL]	--	"Molecular Function: guanylate cyclase activity (GO:0004383);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cGMP biosynthetic process (GO:0006182);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: oligosaccharide metabolic process (GO:0009311);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: cellular water homeostasis (GO:0009992);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: response to chitin (GO:0010200);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: ovule development (GO:0048481);; Biological Process: lateral root development (GO:0048527);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: defense response to fungus (GO:0050832);; "	--	Wall-associated receptor kinase 3 (Precursor) GN=WAK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Os02g0807800 protein GN=Os02g0807800 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Os02g0807800 [Oryza sativa Japonica Group] 
comp225970_c0	0.009677792	-2.007252377	down	--	--	--	--	--	--	--
comp130071_c0	1.58E-06	2.615857872	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; "	--	--	Uncharacterized protein (Fragment) GN=Si003905m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	Os01g0888800 [Oryza sativa Japonica Group] 
comp215365_c1	0.003615995	2.595659552	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: metabolic process (GO:0008152);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: glucuronosyltransferase activity (GO:0015020);; Biological Process: secondary metabolic process (GO:0019748);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: cellular catabolic process (GO:0044248);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: trans-zeatin O-beta-D-glucosyltransferase activity (GO:0050403);; Molecular Function: cis-zeatin O-beta-D-glucosyltransferase activity (GO:0050502);; Molecular Function: indole-3-butyrate beta-glucosyltransferase activity (GO:0052638);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; Biological Process: cellular response to abscisic acid stimulus (GO:0071215);; Biological Process: cellular hyperosmotic salinity response (GO:0071475);; Biological Process: indolebutyric acid metabolic process (GO:0080024);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Biological Process: response to karrikin (GO:0080167);; "	--	UDP-glycosyltransferase 85A3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=OB04G15960 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein SORBIDRAFT_09g023700 [Sorghum bicolor] 
comp184280_c0	0.008657547	-2.02436712	down	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ion transport (GO:0006811);; Biological Process: immune response (GO:0006955);; Biological Process: signal transduction (GO:0007165);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: response to organic substance (GO:0010033);; Biological Process: tapetal cell fate specification (GO:0010234);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: organic substance transport (GO:0071702);; "	--	Probable receptor-like protein kinase At5g18500 GN=At5g18500 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein (Fragment) GN=Si012450m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein OsI_16236 [Oryza sativa Indica Group]
comp210145_c0	0.00012024	2.282060403	up	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: cell periphery (GO:0071944);; "	--	Early nodulin-like protein 2 (Precursor) GN=At4g27520 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si007075m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: early nodulin-like protein 2-like [Setaria italica]
comp225737_c0	0.001634542	-2.641938908	down	--	--	--	--	--	Putative uncharacterized protein Sb05g016477 (Fragment) GN=Sb05g016477 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g016477 [Sorghum bicolor] 
comp221814_c2	0.006934334	-2.057999291	down	[Z]	Cytoskeleton 	"Molecular Function: glycerol-3-phosphate O-acyltransferase activity (GO:0004366);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: cytoskeleton (GO:0005856);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: seed germination (GO:0009845);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: actin cytoskeleton organization (GO:0030036);; Biological Process: regulation of protein localization (GO:0032880);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell division (GO:0051301);; "	--	Actin OS=Gossypium hirsutum (Upland cotton) PE=3 SV=1	Actin (Fragment) OS=Solanum lycopersicum (Tomato) PE=2 SV=1	actin, partial [Solanum lycopersicum]
comp201779_c2	0.002265826	1.886586288	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: UDP-glucose 6-dehydrogenase activity (GO:0003979);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: UDP-glucuronate biosynthetic process (GO:0006065);; Biological Process: Golgi organization (GO:0007030);; Biological Process: vacuole organization (GO:0007033);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: D-xylose metabolic process (GO:0042732);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: NAD binding (GO:0051287);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00012|7e-83|sbi:SORBI_01g043150|hypothetical protein	UDP-glucose 6-dehydrogenase 1 GN=OSJNBa0020H02.10 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	UDP-glucose 6-dehydrogenase GN=Si035452m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: UDP-glucose 6-dehydrogenase 4-like [Setaria italica]
comp196452_c2	0.00509156	-1.841636518	down	[M]	Cell wall/membrane/envelope biogenesis 	"Biological Process: cell morphogenesis (GO:0000902);; Cellular Component: cell wall (GO:0005618);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: water transport (GO:0006833);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: xylem development (GO:0010089);; Biological Process: positive regulation of abscisic acid biosynthetic process (GO:0010116);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|0.0|osa:4324625|Os01g0750300	Cellulose synthase A catalytic subunit 4 [UDP-forming] GN=P0046E05.4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=OsJ_03463 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein OsJ_03463 [Oryza sativa Japonica Group]
comp234576_c0	0.000256231	-2.205072867	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: transport (GO:0006810);; Biological Process: defense response (GO:0006952);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: epidermis development (GO:0008544);; Biological Process: response to bacterium (GO:0009617);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: flower development (GO:0009908);; Biological Process: response to UV-B (GO:0010224);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: external encapsulating structure organization (GO:0045229);; Biological Process: meristem development (GO:0048507);; Biological Process: developmental growth (GO:0048589);; Biological Process: phyllome development (GO:0048827);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: response to stimulus (GO:0050896);; "	--	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor) GN=At3g03770 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si028967m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like isoform X1 [Setaria italica] 
comp218269_c0	0.002019766	1.901938931	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; "	--	--	Uncharacterized protein GN=Si036412m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable transcription factor GLK1-like isoform X2 [Setaria italica]
comp233629_c1	0.001240739	1.997584615	up	--	--	"Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: defense response (GO:0006952);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Aspartic proteinase Asp1 (Precursor) GN=OsJ_031884 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp234684_c0	4.94E-06	2.613497363	up	[RTKL]	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: nucleotide transport (GO:0006862);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: ammonium transport (GO:0015696);; Biological Process: basic amino acid transport (GO:0015802);; Molecular Function: protein phosphatase binding (GO:0019903);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of pollen tube growth (GO:0080092);; "	K13412|0.0|sbi:SORBI_01g005780|hypothetical protein	Calcium-dependent protein kinase 1 GN=MUK11.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si034743m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: calcium-dependent protein kinase 1-like [Setaria italica]
comp210620_c0	0	5.056449437	up	[T]	Signal transduction mechanisms 	"Cellular Component: chloroplast inner membrane (GO:0009706);; "	--	--	Uncharacterized protein GN=Si037183m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101786036 isoform X1 [Setaria italica]
comp212607_c0	0.007122357	-2.418669026	down	--	--	"Cellular Component: chromatin (GO:0000785);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: specification of floral organ identity (GO:0010093);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: phosphatidylinositol-5-phosphate binding (GO:0010314);; Biological Process: gene silencing (GO:0016458);; Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);; Biological Process: metal ion transport (GO:0030001);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: response to chemical stimulus (GO:0042221);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: histone H3-K4 methylation (GO:0051568);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 1 (Precursor) GN=PEX1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si029598m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2-like [Setaria italica]
comp222918_c0	9.67E-05	2.226490585	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp226188_c1	0.003513103	-2.061548868	down	--	--	"Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Biological Process: apoptotic process (GO:0006915);; Biological Process: defense response (GO:0006952);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: ADP binding (GO:0043531);; Cellular Component: cell part (GO:0044464);; "	--	Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb05g005950 GN=Sb05g005950 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g005950 [Sorghum bicolor] 
comp166506_c0	6.25E-05	-2.472307451	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: isoflavonoid phytoalexin biosynthetic process (GO:0009701);; Biological Process: flavonoid metabolic process (GO:0009812);; Biological Process: alkaloid biosynthetic process (GO:0009821);; Molecular Function: isoflavone 4'-O-methyltransferase activity (GO:0030746);; Molecular Function: 8-hydroxyquercitin 8-O-methyltransferase activity (GO:0030761);; Molecular Function: 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity (GO:0030766);; Biological Process: methylation (GO:0032259);; Molecular Function: myricetin 3'-O-methyltransferase activity (GO:0033799);; Molecular Function: isoflavone 7-O-methyltransferase activity (GO:0033800);; Molecular Function: protein homodimerization activity (GO:0042803);; "	--	Probable O-methyltransferase 2 GN=OMT2 OS=Sorghum bicolor (Sorghum) PE=2 SV=1	Putative O-methyltransferase 2 GN=TRIUR3_11459 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	putative O-methyltransferase 2 [Triticum urartu]
comp342454_c0	2.21E-07	-4.566945218	down	--	--	--	--	--	Putative uncharacterized protein Sb01g044080 GN=Sb01g044080 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g044080 [Sorghum bicolor] 
comp212891_c0	0.000174779	-2.251233726	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: proteolysis (GO:0006508);; Biological Process: defense response (GO:0006952);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: salicylic acid metabolic process (GO:0009696);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; Molecular Function: aspartic-type peptidase activity (GO:0070001);; Cellular Component: cell periphery (GO:0071944);; Biological Process: response to karrikin (GO:0080167);; "	--	Protein ASPARTIC PROTEASE IN GUARD CELL 1 (Precursor) GN=ASPG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si001181m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Setaria italica]
comp216263_c0	0.00829073	1.911326061	up	--	--	--	--	Anther-specific proline-rich protein APG (Fragment) GN=APG OS=Brassica napus (Rape) PE=2 SV=1	Putative uncharacterized protein Sb04g028650 GN=Sb04g028650 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g028650 [Sorghum bicolor] 
comp232322_c0	3.22E-15	4.171665666	up	[L]	Replication, recombination and repair 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: proteolysis (GO:0006508);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; "	--	Uncharacterized mitochondrial protein AtMg00860 GN=AtMg00860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	Retrotransposon protein, putative, unclassified GN=LOC_Os03g13350 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
comp238706_c0	1.55E-15	4.267822584	up	--	--	--	--	--	--	--
comp230596_c0	0.002224829	-2.34762326	down	[G]	Carbohydrate transport and metabolism 	"Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glycolysis (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic ribosome (GO:0022626);; Cellular Component: thylakoid lumen (GO:0031977);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; "	K01623|1e-109|osa:4349897|Os11g0171300	Fructose-bisphosphate aldolase, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2	Fructose-bisphosphate aldolase GN=LOC_Os11g07020 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group]
comp212510_c0	0.005717433	-2.637038444	down	--	--	"Cellular Component: 1,3-beta-D-glucan synthase complex (GO:0000148);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: 1,3-beta-D-glucan synthase activity (GO:0003843);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: (1->3)-beta-D-glucan biosynthetic process (GO:0006075);; Biological Process: amino acid transport (GO:0006865);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: circadian rhythm (GO:0007623);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen germination (GO:0009846);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: defense response signaling pathway, resistance gene-dependent (GO:0009870);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: leaf senescence (GO:0010150);; Biological Process: pollen exine formation (GO:0010584);; Biological Process: cellular membrane organization (GO:0016044);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: intracellular transport (GO:0046907);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: callose deposition in cell wall (GO:0052543);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Biological Process: regulation of pollen tube growth (GO:0080092);; "	--	Putative callose synthase 6 GN=F17J16.150 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: callose synthase 7-like [Setaria italica]
comp227760_c1	8.98E-05	-2.459023545	down	--	--	"Molecular Function: anion channel activity (GO:0005253);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to aluminum ion (GO:0010044);; Biological Process: stomatal movement (GO:0010118);; Cellular Component: endomembrane system (GO:0012505);; Molecular Function: malate transmembrane transporter activity (GO:0015140);; Biological Process: malate transport (GO:0015743);; Cellular Component: membrane (GO:0016020);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; "	--	Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Putative uncharacterized protein Sb06g025640 GN=Sb06g025640 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g025640 [Sorghum bicolor] 
comp217902_c0	0.009027108	-1.924988437	down	--	--	"Biological Process: cellular process (GO:0009987);; Cellular Component: nuclear lumen (GO:0031981);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: neurofilament heavy polypeptide-like isoform X1 [Setaria italica]
comp204254_c0	0.003868192	-1.971617074	down	--	--	"Biological Process: RNA processing (GO:0006396);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of biological process (GO:0050789);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si011095m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101785447 [Setaria italica]
comp218793_c0	7.40E-07	2.681342173	up	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g019020 GN=Sb09g019020 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g019020 [Sorghum bicolor] 
comp162895_c0	0.004993235	2.771405422	up	[K]	Transcription 	"Molecular Function: copper ion binding (GO:0005507);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: nutrient reservoir activity (GO:0045735);; Cellular Component: cell periphery (GO:0071944);; "	--	Proline-rich receptor-like protein kinase PERK9 GN=PERK9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp217357_c0	2.87E-06	2.949883126	up	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: cellular component organization (GO:0016043);; Cellular Component: cell part (GO:0044464);; Biological Process: system development (GO:0048731);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: response to stimulus (GO:0050896);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Vegetative cell wall protein GN=iGP1 OS=Chlamydomonas incerta PE=4 SV=1	vegetative cell wall protein [Chlamydomonas incerta]
comp208555_c0	0.001780516	-2.561456953	down	[R]	General function prediction only 	--	--	--	Putative uncharacterized protein Sb08g003200 GN=Sb08g003200 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g003200 [Sorghum bicolor] 
comp232025_c0	0.006538106	2.076490972	up	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: polysaccharide binding (GO:0030247);; "	--	Sulfated surface glycoprotein 185 (Precursor) OS=Volvox carteri (Green alga) PE=1 SV=1	Putative uncharacterized protein GN=OsJ_23708 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	hypothetical protein OsJ_23708 [Oryza sativa Japonica Group]
comp228934_c1	0.000111862	-2.325704124	down	--	--	"Biological Process: transport (GO:0006810);; Molecular Function: hydrolase activity (GO:0016787);; "	--	--	Uncharacterized protein GN=Solyc11g044610.1 OS=Solanum lycopersicum (Tomato) PE=4 SV=1	Cell wall-associated hydrolase [Medicago truncatula] 
comp203001_c0	0.000697684	2.051635888	up	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ion transport (GO:0006811);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to ozone (GO:0010193);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: nitrogen compound transport (GO:0071705);; Biological Process: response to karrikin (GO:0080167);; "	--	Cysteine-rich repeat secretory protein 55 (Precursor) GN=CRRSP55 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si022262m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cysteine-rich repeat secretory protein 55-like [Setaria italica]
comp142596_c0	0.001678971	1.974626154	up	--	--	--	--	--	Uncharacterized protein GN=Si003370m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein [Oryza sativa Japonica Group] 
comp212744_c0	0.002453837	1.883082582	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cation transport (GO:0006812);; Biological Process: anion transport (GO:0006820);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: nitrogen compound transport (GO:0071705);; Biological Process: negative regulation of leaf senescence (GO:1900056);; "	--	WRKY transcription factor 55 GN=WRKY55 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si025307m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101758761 [Setaria italica]
comp217804_c1	0.002697057	1.943654018	up	--	--	"Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: ion transport (GO:0006811);; Biological Process: defense response (GO:0006952);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to inorganic substance (GO:0010035);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: heme binding (GO:0020037);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: respiratory burst (GO:0045730);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root development (GO:0048364);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to chemical stimulus (GO:0070887);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	Peroxidase 2 (Precursor) GN=PER2 OS=Zea mays (Maize) PE=2 SV=1	Peroxidase 2 GN=TRIUR3_12695 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	Peroxidase 2 [Triticum urartu]
comp233939_c2	1.28E-05	-2.527643875	down	[S]	Function unknown 	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: nucleotide binding (GO:0000166);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: immune response (GO:0006955);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development (GO:0009790);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: cell differentiation (GO:0030154);; Molecular Function: signaling receptor activity (GO:0038023);; Biological Process: gametophyte development (GO:0048229);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization or biogenesis (GO:0071554);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) GN=At4g26540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si021029m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Setaria italica]
comp224363_c0	1.36E-08	3.012588378	up	--	--	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein Sb02g003130 GN=Sb02g003130 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101764522 [Setaria italica]
comp217900_c0	1.35E-11	3.572913647	up	--	--	--	--	--	Uncharacterized protein GN=OB03G42380 OS=Oryza brachyantha PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781321 [Setaria italica]
comp226268_c0	0.000509774	2.184563114	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: steroid biosynthetic process (GO:0006694);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: flower development (GO:0009908);; Biological Process: response to red light (GO:0010114);; Biological Process: response to chitin (GO:0010200);; Molecular Function: (+)-abscisic acid 8'-hydroxylase activity (GO:0010295);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: cell differentiation (GO:0030154);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: external encapsulating structure organization (GO:0045229);; Biological Process: abscisic acid catabolic process (GO:0046345);; Biological Process: organ development (GO:0048513);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: release of seed from dormancy (GO:0048838);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; "	K09843|0.0|osa:4347261|Os09g0457100	"Abscisic acid 8'-hydroxylase 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1"	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=3 SV=1	putative cytochrome P450 [Oryza sativa Japonica Group]
comp225336_c0	0.000749651	-2.465040696	down	[M]	Cell wall/membrane/envelope biogenesis 	--	--	--	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_70670 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70670, partial [Aureococcus anophagefferens]
comp210662_c0	0.003393623	-2.853501552	down	--	--	"Biological Process: polysaccharide catabolic process (GO:0000272);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: organelle organization (GO:0006996);; Biological Process: cell cycle (GO:0007049);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0007178);; Biological Process: epidermis development (GO:0008544);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Biological Process: pollen development (GO:0009555);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: axis specification (GO:0009798);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: phloem transport (GO:0010233);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: phosphorylation (GO:0016310);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: regulation of anatomical structure morphogenesis (GO:0022603);; Biological Process: cell differentiation (GO:0030154);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: regulation of growth (GO:0040008);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: innate immune response (GO:0045087);; Biological Process: stamen development (GO:0048443);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: developmental growth (GO:0048589);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: regulation of immune response (GO:0050776);; Biological Process: cell division (GO:0051301);; Biological Process: detection of stimulus (GO:0051606);; Biological Process: cellular localization (GO:0051641);; Biological Process: cell wall organization (GO:0071555);; "	--	Serine/threonine-protein kinase BRI1-like 2 (Precursor) GN=F14H20.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=OB10G10640 OS=Oryza brachyantha PE=4 SV=1	TPA: putative leucine-rich repeat receptor-like protein kinase family protein [Zea mays]
comp212381_c0	1.81E-11	4.294751143	up	--	--	--	--	--	Uncharacterized protein GN=Si023777m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770246 [Setaria italica]
comp233384_c2	0.002788703	-1.988354237	down	[P]	Inorganic ion transport and metabolism 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sodium ion transport (GO:0006814);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: lipid transport (GO:0006869);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: high-affinity potassium ion import (GO:0010163);; Molecular Function: lithium:hydrogen antiporter activity (GO:0010348);; Biological Process: lithium ion export (GO:0010352);; Molecular Function: sodium:hydrogen antiporter activity (GO:0015385);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: sodium ion transmembrane transport (GO:0035725);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; "	--	Sodium/hydrogen exchanger 7 GN=F14H20.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Plasma membrane Na+/H+ antiporter OS=Aeluropus littoralis PE=2 SV=2	plasma membrane Na+/H+ antiporter [Aeluropus littoralis]
comp207611_c0	2.21E-08	2.979274349	up	--	--	--	--	--	Putative uncharacterized protein Sb06g027800 GN=Sb06g027800 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g027800 [Sorghum bicolor] 
comp130553_c0	0.004271602	-3.269159058	down	--	--	--	--	--	Uncharacterized protein GN=Bra034148 OS=Brassica rapa subsp. pekinensis (Chinese cabbage) PE=4 SV=1	hypothetical protein CPAR2_500900 [Candida parapsilosis]
comp223522_c0	0.003709496	1.827947294	up	--	--	--	--	NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	NAC transcription factor (Fragment) OS=Zea mays (Maize) PE=2 SV=1	NAC transcription factor [Zea mays]
comp191501_c2	7.01E-07	4.307382596	up	--	--	"Biological Process: defense response to insect (GO:0002213);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: extracellular region (GO:0005576);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: RNA processing (GO:0006396);; Biological Process: flower development (GO:0009908);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: cellular component biogenesis (GO:0044085);; Biological Process: organ development (GO:0048513);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: negative regulation of developmental process (GO:0051093);; Molecular Function: organic cyclic compound binding (GO:0097159);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 3 (Precursor) GN=PEX3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Pathogenesis-related protein 1-like protein GN=VOLCADRAFT_127359 OS=Volvox carteri (Green alga) PE=4 SV=1	pathogenesis-related protein 1-like protein [Volvox carteri f. nagariensis] 
comp215876_c0	0.00382626	-1.883707572	down	--	--	"Biological Process: defense response (GO:0006952);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	CASP-like protein Os11g0549625 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Putative uncharacterized protein GN=OsI_36445 OS=Oryza sativa subsp. indica (Rice) PE=3 SV=1	RecName: Full=CASP-like protein Os11g0549625 
comp228570_c0	0.002793431	2.04307392	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: DNA repair (GO:0006281);; Biological Process: translational initiation (GO:0006413);; Biological Process: regulation of translation (GO:0006417);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: vegetative phase change (GO:0010050);; Molecular Function: 3'-tyrosyl-DNA phosphodiesterase activity (GO:0017005);; "	K03113|6e-78|zma:100286322|TIDP3683	Protein translation factor SUI1 homolog GN=GOS2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Protein translation factor SUI1 GN=ZEAMMB73_586492 OS=Zea mays (Maize) PE=4 SV=1	protein translation factor SUI1 [Zea mays]
comp197358_c0	4.49E-05	2.32706175	up	[S]	Function unknown 	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: receptor-mediated endocytosis (GO:0006898);; Biological Process: cell cycle (GO:0007049);; Biological Process: signal transduction (GO:0007165);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0007178);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: regulation of anion channel activity (GO:0010359);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transmembrane receptor protein kinase activity (GO:0019199);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: innate immune response (GO:0045087);; Biological Process: stamen development (GO:0048443);; Biological Process: meristem development (GO:0048507);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of immune response (GO:0050776);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; "	K13420|0.0|sbi:SORBI_06g028760|hypothetical protein	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor) GN=FLS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	PH01B019A14.19 protein GN=PH01B019A14.19 OS=Phyllostachys edulis PE=4 SV=1	PH01B019A14.19 [Phyllostachys edulis]
comp223224_c0	0.000210544	2.212050839	up	--	--	"Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Formin-like protein 14 GN=FH14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3	Uncharacterized protein GN=Si017856m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101756947 [Setaria italica]
comp209409_c0	0.001649441	2.05559024	up	--	--	--	--	--	Uncharacterized protein GN=Si022873m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101776447 isoform X2 [Setaria italica]
comp156508_c0	0.005024896	-2.972862742	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: binding (GO:0005488);; Cellular Component: intrinsic to membrane (GO:0031224);; Cellular Component: cell part (GO:0044464);; "	--	Formin-like protein 16 (Precursor) GN=OsJ_008039 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=BRADI4G14970 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: uncharacterized protein LOC100824942 [Brachypodium distachyon]
comp236694_c0	0.000900519	1.996322716	up	[V]	Defense mechanisms 	"Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; Molecular Function: transmembrane transporter activity (GO:0022857);; "	--	Protein TRANSPARENT TESTA 12 GN=F17J16_80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g031980 GN=Sb04g031980 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g031980 [Sorghum bicolor] 
comp183441_c0	9.69E-09	3.126013341	up	--	--	--	--	--	Putative uncharacterized protein Sb04g035080 GN=Sb04g035080 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: mucin-19-like [Setaria italica]
comp202940_c0	1.35E-10	3.907461501	up	--	--	--	--	Proline-rich receptor-like protein kinase PERK10 GN=PERK10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein OS=Musa acuminata subsp. malaccensis (Wild banana) PE=4 SV=1	uncharacterized protein LOC100279600 [Zea mays] 
comp224706_c0	2.69E-07	2.786781794	up	--	--	--	--	Transcription factor bHLH92 GN=K9D7.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002320m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g036100 [Sorghum bicolor] 
comp232265_c1	0.009041204	-1.834919614	down	--	--	--	--	Leucine-rich repeat extensin-like protein 5 (Precursor) GN=LRX5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si012417m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: thioredoxin-like 3-3-like [Setaria italica]
comp200417_c0	0	5.381920282	up	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si004203m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101768013 [Setaria italica]
comp217461_c0	0.000954272	2.110837579	up	--	--	--	--	--	Putative uncharacterized protein OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Unknown protein [Arabidopsis thaliana]
comp206145_c0	0.000670571	-2.211777066	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: plastid (GO:0009536);; "	--	--	Uncharacterized protein GN=Si009863m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101752639 [Setaria italica]
comp220259_c0	3.00E-07	-3.482089572	down	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: Golgi apparatus (GO:0005794);; "	--	Formin-like protein 20 GN=MBK20.20/MBK20.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Putative uncharacterized protein Sb01g003530 GN=Sb01g003530 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g003530 [Sorghum bicolor] 
comp226844_c0	6.96E-07	2.705783768	up	[P]	Inorganic ion transport and metabolism 	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calcium-transporting ATPase activity (GO:0005388);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: nucleotide transport (GO:0006862);; Biological Process: cellular zinc ion homeostasis (GO:0006882);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cellular membrane fusion (GO:0006944);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: plastid (GO:0009536);; Biological Process: response to nematode (GO:0009624);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to salt stress (GO:0009651);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: response to carbon dioxide (GO:0010037);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: ammonium transport (GO:0015696);; Biological Process: basic amino acid transport (GO:0015802);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Biological Process: regulation of ion transport (GO:0043269);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: anion homeostasis (GO:0055081);; Biological Process: calcium ion transmembrane transport (GO:0070588);; "	--	Putative calcium-transporting ATPase 13, plasma membrane-type GN=ACA13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Putative uncharacterized protein Sb01g021870 GN=Sb01g021870 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g021870 [Sorghum bicolor] 
comp211447_c0	1.61E-06	3.956508488	up	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: spindle (GO:0005819);; Cellular Component: actin filament (GO:0005884);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: phragmoplast (GO:0009524);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: cell tip growth (GO:0009932);; Biological Process: meristem initiation (GO:0010014);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: response to UV-B (GO:0010224);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: floral whorl development (GO:0048438);; Biological Process: floral organ formation (GO:0048449);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; Biological Process: root hair elongation (GO:0048767);; Biological Process: phyllome development (GO:0048827);; Molecular Function: actin filament binding (GO:0051015);; Biological Process: barbed-end actin filament capping (GO:0051016);; Biological Process: cell wall organization (GO:0071555);; "	--	Formin-like protein 9 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si013233m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: formin-like protein 9-like isoform X2 [Setaria italica]
comp231257_c0	0.000155579	2.236699826	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: phosphoric diester hydrolase activity (GO:0008081);; Cellular Component: plastid (GO:0009536);; Biological Process: pollen development (GO:0009555);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to salt stress (GO:0009651);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: regulation of anion channel activity (GO:0010359);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: amino acid import (GO:0043090);; Biological Process: post-translational protein modification (GO:0043687);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to osmotic stress (GO:0071470);; "	--	Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb09g021590 GN=Sb09g021590 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g021590 [Sorghum bicolor] 
comp227474_c3	0.005962248	1.767585629	up	--	--	"Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	--	Gibberellin 20 oxidase 2 (Fragment) OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	gibberellin 20 oxidase 2 [Oryza sativa Indica Group]
comp229799_c0	8.43E-07	2.757397727	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: terpenoid metabolic process (GO:0006721);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast (GO:0009507);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen (GO:0016709);; Molecular Function: alkane 1-monooxygenase activity (GO:0018685);; Molecular Function: heme binding (GO:0020037);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: response to stimulus (GO:0050896);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 (Fragment) OS=Helianthus annuus (Common sunflower) PE=1 SV=1	Uncharacterized protein GN=Si009906m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 94A1-like [Setaria italica]
comp224680_c0	2.37E-05	2.550847086	up	[I]	Lipid transport and metabolism 	"Molecular Function: binding (GO:0005488);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: amino acid transport (GO:0006865);; Biological Process: defense response (GO:0006952);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: response to organic cyclic compound (GO:0014070);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: organ development (GO:0048513);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: multi-organism process (GO:0051704);; Molecular Function: carboxylic ester hydrolase activity (GO:0052689);; "	--	Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb03g005570 GN=Sb03g005570 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_465748 [Zea mays]
comp228538_c0	5.55E-07	-2.838062805	down	[I]	Lipid transport and metabolism 	"Biological Process: cellular component organization (GO:0016043);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein Sb08g009120 GN=Sb08g009120 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: skin secretory protein xP2-like [Setaria italica]
comp228599_c0	0.003774906	-1.890610634	down	--	--	"Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: growth (GO:0040007);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Cellular Component: anchored to plasma membrane (GO:0046658);; Cellular Component: apoplast (GO:0048046);; "	--	Fasciclin-like arabinogalactan protein 10 (Precursor) GN=FLA10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036026m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: fasciclin-like arabinogalactan protein 8-like [Setaria italica]
comp132297_c0	0.00877059	-3.600875188	down	[R]	General function prediction only 	"Molecular Function: D-arabinono-1,4-lactone oxidase activity (GO:0003885);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Cellular Component: membrane (GO:0016020);; Biological Process: L-ascorbic acid biosynthetic process (GO:0019853);; Molecular Function: L-gulonolactone oxidase activity (GO:0050105);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	--	Putative uncharacterized protein Sb04g011130 GN=Sb04g011130 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g011130 [Sorghum bicolor] 
comp188550_c0	0.004271602	-3.269159058	down	--	--	"Biological Process: RNA processing (GO:0006396);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: polysaccharide binding (GO:0030247);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of biological process (GO:0050789);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si022603m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101786426 [Setaria italica]
comp212210_c0	0.007384935	2.343783426	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: catalytic activity (GO:0003824);; "	--	--	Uncharacterized protein GN=EGL-V.6 OS=Phytophthora ramorum (Sudden oak death agent) PE=4 SV=1	cell 5A endo-1,4-betaglucanase [Phytophthora ramorum]
comp235482_c0	4.00E-06	2.613433176	up	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: glycolysis (GO:0006096);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Molecular Function: calcium-dependent protein serine/threonine kinase activity (GO:0009931);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Biological Process: growth (GO:0040007);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: leaf development (GO:0048366);; Biological Process: lateral root development (GO:0048527);; Molecular Function: phosphatidic acid binding (GO:0070300);; Biological Process: primary root development (GO:0080022);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; "	K14498|0.0|zma:100282467|pco105841	Serine/threonine-protein kinase SAPK2 GN=SAPK2 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb02g039640 GN=Sb02g039640 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g039640 [Sorghum bicolor] 
comp224786_c3	0.00130513	3.383184712	up	--	--	"Biological Process: metabolic process (GO:0008152);; "	--	Probable sucrose-phosphate synthase 1 GN=P0678F11.16 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=F775_17257 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_17257 [Aegilops tauschii]
comp227263_c1	3.35E-08	4.613660338	up	--	--	--	--	--	Putative uncharacterized protein GN=LOC_Os11g37570 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	--
comp229149_c0	1.61E-05	3.702241938	up	--	--	--	--	Zinc finger protein 6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g034740 GN=Sb04g034740 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g034740 [Sorghum bicolor] 
comp216448_c0	0.007987861	1.737135256	up	[R]	General function prediction only 	"Molecular Function: GTP binding (GO:0005525);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: cell plate (GO:0009504);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: protein transport (GO:0015031);; Biological Process: vesicle-mediated transport (GO:0016192);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: kinase binding (GO:0019900);; Cellular Component: early endosome membrane (GO:0031901);; Biological Process: endocytic recycling (GO:0032456);; Cellular Component: trans-Golgi network membrane (GO:0032588);; Biological Process: hyperosmotic salinity response (GO:0042538);; Cellular Component: apical part of cell (GO:0045177);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: exocytic vesicle (GO:0070382);; Biological Process: regulation of pollen tube growth (GO:0080092);; Cellular Component: pollen tube tip (GO:0090404);; "	--	Ras-related protein RGP1 GN=P0645D04.22-1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=3 SV=1	"RecName: Full=Ras-related protein RGP1; AltName: Full=GTP-binding regulatory protein RGP1 "
comp225614_c0	0.003336127	-2.289361075	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; "	--	U-box domain-containing protein 41 GN=PUB41 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si029667m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 10-like isoform X1 [Setaria italica] 
comp169822_c0	0.00146932	-2.740803225	down	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem growth (GO:0010075);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response to Gram-negative bacterium (GO:0050829);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall organization (GO:0071555);; Cellular Component: cell periphery (GO:0071944);; "	--	Defensin-like protein (Precursor) OS=Nelumbo nucifera (Sacred lotus) PE=3 SV=1	Defensin GN=PRPI-8 OS=Triticum durum (Durum wheat) PE=4 SV=1	defensin precursor [Triticum durum]
comp165315_c0	1.29E-06	-3.329853052	down	--	--	"Biological Process: cellular component organization (GO:0016043);; Cellular Component: cell part (GO:0044464);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si017333m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: skin secretory protein xP2-like [Setaria italica]
comp208060_c1	0.007172346	-2.093484745	down	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plastid (GO:0009536);; Biological Process: flower development (GO:0009908);; Biological Process: cell cycle process (GO:0022402);; Cellular Component: protein complex (GO:0043234);; Cellular Component: chromosomal part (GO:0044427);; "	--	WEB family protein At5g16730, chloroplastic (Precursor) GN=At5g16730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si009428m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: WEB family protein At5g16730, chloroplastic-like [Setaria italica]
comp224402_c0	0.004567881	1.801868903	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: simple leaf morphogenesis (GO:0060776);; "	--	LOB domain-containing protein 41 GN=F16B3.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002412m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: LOB domain-containing protein 41-like [Setaria italica]
comp233481_c0	4.47E-08	2.918386272	up	--	--	--	--	--	--	--
comp206372_c0	0.003142543	2.05425587	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor (GO:0016901);; Cellular Component: anchored to plasma membrane (GO:0046658);; Molecular Function: quinone binding (GO:0048038);; "	--	HIPL1 protein (Precursor) GN=HIPL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si035078m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: HIPL1 protein-like [Setaria italica]
comp200577_c0	5.77E-05	-2.38538229	down	--	--	"Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si010523m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772356 [Setaria italica]
comp223933_c0	0.003007271	-2.006010255	down	--	--	"Cellular Component: plastid (GO:0009536);; "	--	--	Uncharacterized protein GN=Si011803m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784791 [Setaria italica]
comp233754_c1	0.000310074	-2.198313714	down	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: O-acyltransferase activity (GO:0008374);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: external encapsulating structure organization (GO:0045229);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; Biological Process: response to stimulus (GO:0050896);; "	--	Omega-hydroxypalmitate O-feruloyl transferase GN=MEE6.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si001257m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Setaria italica]
comp129933_c0	9.66E-05	2.230500388	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Biological Process: regulation of protein phosphorylation (GO:0001932);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: protein folding (GO:0006457);; Biological Process: glycine catabolic process (GO:0006546);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: oxidoreduction coenzyme metabolic process (GO:0006733);; Biological Process: vitamin metabolic process (GO:0006766);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Biological Process: lipoate metabolic process (GO:0009106);; Biological Process: coenzyme biosynthetic process (GO:0009108);; Biological Process: nucleotide metabolic process (GO:0009117);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stromal thylakoid (GO:0009533);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast thylakoid lumen (GO:0009543);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: de-etiolation (GO:0009704);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: blue light signaling pathway (GO:0009785);; Biological Process: photorespiration (GO:0009853);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: response to red light (GO:0010114);; Biological Process: regulation of proton transport (GO:0010155);; Biological Process: response to far red light (GO:0010218);; Biological Process: NAD(P)H dehydrogenase complex assembly (GO:0010275);; Biological Process: response to mannitol stimulus (GO:0010555);; Biological Process: floral meristem determinacy (GO:0010582);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: protein sumoylation (GO:0016925);; Cellular Component: SCF ubiquitin ligase complex (GO:0019005);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: secondary metabolic process (GO:0019748);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: Cul3-RING ubiquitin ligase complex (GO:0031463);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Molecular Function: protein histidine kinase binding (GO:0043424);; Biological Process: protein targeting to chloroplast (GO:0045036);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: root development (GO:0048364);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: proteasome core complex assembly (GO:0080129);; "	--	Peptidyl-prolyl cis-trans isomerase GN=PCKR1 OS=Catharanthus roseus (Madagascar periwinkle) PE=2 SV=1	Peptidyl-prolyl cis-trans isomerase GN=Sb01g025840 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g025840 [Sorghum bicolor] 
comp210860_c1	0.003581413	1.909390703	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: leaf development (GO:0048366);; Biological Process: lateral root development (GO:0048527);; Biological Process: response to karrikin (GO:0080167);; "	--	B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si008509m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: B3 domain-containing protein Os06g0107800-like [Setaria italica]
comp219105_c0	0.000169653	2.189148228	up	[U]	Intracellular trafficking, secretion, and vesicular transport 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: cellular membrane fusion (GO:0006944);; Cellular Component: chloroplast (GO:0009507);; Biological Process: trichome differentiation (GO:0010026);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of epidermal cell division (GO:0010482);; Biological Process: vesicle-mediated transport (GO:0016192);; Biological Process: endosomal transport (GO:0016197);; Biological Process: D-xylose metabolic process (GO:0042732);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: histone H3-K9 methylation (GO:0051567);; "	--	GEM-like protein 1 GN=FIP1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	FIP1 OS=Zea mays (Maize) PE=2 SV=1	FIP1 [Zea mays] 
comp170749_c0	5.27E-10	-3.851078932	down	--	--	--	--	--	--	--
comp232789_c0	0.006718294	-1.809279126	down	--	--	"Molecular Function: transferase activity (GO:0016740);; "	--	Agmatine coumaroyltransferase-2 GN=ACT-2 OS=Hordeum vulgare (Barley) PE=1 SV=1	Putative uncharacterized protein Sb07g020400 GN=Sb07g020400 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772604 [Setaria italica]
comp222188_c0	0.008885053	-2.696517016	down	[E]	Amino acid transport and metabolism 	"Biological Process: regulation of mitotic cell cycle (GO:0007346);; "	--	--	Putative uncharacterized protein Sb04g036110 GN=Sb04g036110 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: neurochondrin-like isoform X1 [Setaria italica]
comp219026_c0	0	4.677665717	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to cold (GO:0009409);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: pollen germination (GO:0009846);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: regulation of DNA-dependent transcription in response to stress (GO:0043620);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: lateral root development (GO:0048527);; Biological Process: response to other organism (GO:0051707);; "	--	Probable WRKY transcription factor 34 GN=WRKY34 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative DNA-binding protein homolog GN=SB32H17.5 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	putative DNA-binding protein homolog [Sorghum bicolor]
comp181344_c0	0.007161356	-2.498763918	down	[U]	Intracellular trafficking, secretion, and vesicular transport 	"Molecular Function: structural molecule activity (GO:0005198);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: transcription factor import into nucleus (GO:0042991);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Vesicle-associated protein 1-3 GN=PVA13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=BRADI5G17900 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: vesicle-associated protein 1-3-like [Brachypodium distachyon]
comp214069_c1	1.69E-06	3.290358691	up	--	--	--	--	--	Putative uncharacterized protein Sb03g010460 GN=Sb03g010460 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g010460 [Sorghum bicolor] 
comp221789_c0	0.006736293	-2.21917294	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Cellular Component: proteasome complex (GO:0000502);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: proteolysis (GO:0006508);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: proteasome regulatory particle, base subcomplex (GO:0008540);; Molecular Function: microtubule-severing ATPase activity (GO:0008568);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: protein catabolic process (GO:0030163);; "	K03066|3e-79|zma:100273032|hypothetical protein LOC100273032	26S protease regulatory subunit 8 homolog A GN=F28I16.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_419750 OS=Zea mays (Maize) PE=1 SV=1	unknown [Zea mays] 
comp216297_c2	1.40E-06	-3.200078431	down	--	--	--	--	Uncharacterized protein At4g15970 GN=At4g15970 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si035913m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At4g15970-like isoform X2 [Setaria italica]
comp232557_c1	0.000339792	-2.207879693	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: diterpenoid biosynthetic process (GO:0016102);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: (S)-limonene 3-monooxygenase activity (GO:0018674);; Molecular Function: (S)-limonene 6-monooxygenase activity (GO:0018675);; Molecular Function: heme binding (GO:0020037);; Molecular Function: ent-isokaurene C2-hydroxylase activity (GO:0036201);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Premnaspirodiene oxygenase GN=CYP71D55 OS=Hyoscyamus muticus (Egyptian henbane) PE=1 SV=1	Putative cytochrome P450 superfamily protein GN=ZEAMMB73_991837 OS=Zea mays (Maize) PE=3 SV=1	putative cytochrome P450 superfamily protein [Zea mays]
comp143899_c0	9.76E-05	-2.643404099	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: membrane (GO:0016020);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si024751m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101771321 [Setaria italica]
comp258339_c0	0.000190277	2.420408706	up	--	--	"Biological Process: protein transport (GO:0015031);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1	Sec61-like protein (Fragment) OS=Helianthus petiolaris (Prairie sunflower) PE=4 SV=1	Sec61-like protein [Helianthus annuus] 
comp225956_c0	0.003284534	1.884133661	up	[R]	General function prediction only 	"Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160);; Biological Process: cytokinesis (GO:0000910);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein folding (GO:0006457);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: nucleocytoplasmic transport (GO:0006913);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: response to heat (GO:0009408);; Cellular Component: cell plate (GO:0009504);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: vesicle-mediated transport (GO:0016192);; Biological Process: second-messenger-mediated signaling (GO:0019932);; Cellular Component: early endosome membrane (GO:0031901);; Cellular Component: trans-Golgi network membrane (GO:0032588);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: response to hydrogen peroxide (GO:0042542);; "	K07976|1e-112|osa:4334619|Os03g0823700	Ras-related protein Rab11C GN=RAB11C OS=Lotus japonicus (Lotus corniculatus var. japonicus) PE=2 SV=1	Uncharacterized protein GN=OB03G46310 OS=Oryza brachyantha PE=3 SV=1	hypothetical protein OsI_14124 [Oryza sativa Indica Group]
comp129989_c0	0.001665405	2.054337409	up	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: regulation of cell proliferation (GO:0042127);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: floral organ formation (GO:0048449);; Biological Process: histone H3-K9 methylation (GO:0051567);; "	--	Glucan endo-1,3-beta-glucosidase 14 (Precursor) GN=At2g27500 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si001660m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: glucan endo-1,3-beta-glucosidase 14-like isoform X1 [Setaria italica]
comp229709_c0	2.95E-05	2.387678048	up	[R]	General function prediction only 	"Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: transmembrane transport (GO:0055085);; "	K07088|0.0|zma:100281451|auxin Efflux Carrier family protein	--	Uncharacterized protein GN=Si029957m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized transporter YBR287W-like [Setaria italica]
comp222123_c3	0.001341661	-2.995068047	down	--	--	"Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: proteolysis (GO:0006508);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: induction of apoptosis (GO:0006917);; Biological Process: Golgi organization (GO:0007030);; Biological Process: vacuole organization (GO:0007033);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to salt stress (GO:0009651);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to UV-C (GO:0010225);; Biological Process: hydrogen peroxide-mediated programmed cell death (GO:0010421);; Biological Process: nitrate transport (GO:0015706);; Biological Process: protein autoprocessing (GO:0016540);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: positive regulation of programmed cell death (GO:0043068);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair elongation (GO:0048767);; "	--	Metacaspase-7 GN=YUP8H12R.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=OB05G29040 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein ZEAMMB73_945417 [Zea mays]
comp206102_c1	0.007017064	2.717984004	up	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: plastid (GO:0009536);; Cellular Component: ribonucleoprotein complex (GO:0030529);; "	--	50S ribosomal protein L12, chloroplastic GN=rpl12 OS=Guillardia theta (Cryptomonas phi) PE=3 SV=1	Ribosomal protein L12 GN=rpl12 OS=Rhodomonas salina (Cryptomonas salina) PE=3 SV=1	ribosomal protein L12 [Rhodomonas salina] 
comp208221_c0	1.48E-08	5.120886146	up	--	--	"Biological Process: Group II intron splicing (GO:0000373);; Molecular Function: endonuclease activity (GO:0004519);; Cellular Component: chloroplast (GO:0009507);; Biological Process: nuclear mRNA cis splicing, via spliceosome (GO:0045292);; Biological Process: photosystem I assembly (GO:0048564);; "	--	Pentatricopeptide repeat-containing protein At2g15820 GN=At2g15820 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein GN=Si016353m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Setaria italica]
comp227187_c4	1.97E-08	5.093145965	up	[K]	Transcription 	"Cellular Component: plastid (GO:0009536);; Molecular Function: transferase activity (GO:0016740);; "	K03046|6e-80|cre:ChreCp047|rpoC2	"DNA-directed RNA polymerase subunit beta'' GN=rpoC2 OS=Porphyra purpurea (Red seaweed) PE=3 SV=1"	RNA polymerase beta'' subunit GN=rpoC2 OS=Calliarthron tuberculosum PE=4 SV=1	"RNA polymerase beta'' subunit (chloroplast) [Calliarthron tuberculosum] "
comp220296_c0	0.000379527	-2.160757948	down	[P]	Inorganic ion transport and metabolism 	"Biological Process: response to superoxide (GO:0000303);; Cellular Component: proteasome complex (GO:0000502);; Molecular Function: copper-exporting ATPase activity (GO:0004008);; Molecular Function: copper ion transmembrane transporter activity (GO:0005375);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: protein import into nucleus (GO:0006606);; Biological Process: ATP biosynthetic process (GO:0006754);; Biological Process: defense response (GO:0006952);; Biological Process: cell death (GO:0008219);; Cellular Component: plastid (GO:0009536);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: photosynthetic electron transport chain (GO:0009767);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: detoxification of copper ion (GO:0010273);; Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism (GO:0015662);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: purine ribonucleotide binding (GO:0032555);; Biological Process: copper ion transmembrane transport (GO:0035434);; Molecular Function: purine ribonucleoside triphosphate binding (GO:0035639);; Biological Process: cellular catabolic process (GO:0044248);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: response to other organism (GO:0051707);; Biological Process: zinc ion homeostasis (GO:0055069);; Biological Process: copper ion export (GO:0060003);; "	K01533|0.0|sbi:SORBI_06g024910|hypothetical protein	Probable copper-transporting ATPase HMA5 GN=HMA5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=BRADI5G17990 OS=Brachypodium distachyon (Purple false brome) PE=3 SV=1	PREDICTED: putative copper-transporting ATPase 3-like [Brachypodium distachyon]
comp233754_c0	0.000814879	-2.425581218	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; "	--	Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb03g008850 GN=Sb03g008850 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g008850 [Sorghum bicolor] 
comp209935_c0	0.003379388	-2.534618788	down	--	--	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: protein binding (GO:0005515);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: iron ion transport (GO:0006826);; Biological Process: water transport (GO:0006833);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: water channel activity (GO:0015250);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: defense response to bacterium (GO:0042742);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide transmembrane transport (GO:0080170);; "	--	Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb0012s010440 GN=Sb0012s010440 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein ZEAMMB73_486123 [Zea mays]
comp221221_c0	2.98E-07	3.143365281	up	--	--	"Biological Process: transport (GO:0006810);; "	K11885|8e-85|osa:4328632|Os02g0198600	Extensin (Precursor) GN=HRGP OS=Zea mays (Maize) PE=2 SV=1	cDNA clone:J013126L13, full insert sequence GN=P0026H03.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	RecName: Full=DNA damage-inducible protein 1
comp131124_c0	0.001910138	-2.494569496	down	--	--	--	--	--	Putative uncharacterized protein Sb04g032340 GN=Sb04g032340 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g032340 [Sorghum bicolor] 
comp196578_c0	7.94E-05	-3.045317013	down	[C]	Energy production and conversion 	"Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: apoplast (GO:0048046);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cannabidiolic acid synthase-like 2 (Precursor) GN=CBDAS3 OS=Cannabis sativa (Hemp) PE=2 SV=1	Putative uncharacterized protein Sb10g021685 GN=Sb10g021685 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] 
comp210038_c0	0.002623773	-2.44861731	down	--	--	--	--	UPF0481 protein At3g47200 GN=At3g47200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si024225m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: UPF0481 protein At3g47200-like [Setaria italica]
comp213932_c1	3.32E-11	3.663219931	up	--	--	--	--	Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative AP2/EREBP transcription factor superfamily protein GN=ZEAMMB73_214192 OS=Zea mays (Maize) PE=4 SV=1	putative AP2/EREBP transcription factor superfamily protein [Zea mays]
comp231591_c0	0.000187939	-2.311242292	down	[S]	Function unknown 	"Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ion transport (GO:0006811);; Biological Process: iron ion transport (GO:0006826);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: amino acid transport (GO:0006865);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to iron ion (GO:0010039);; Biological Process: response to zinc ion (GO:0010043);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: seed development (GO:0048316);; Molecular Function: iron-nicotianamine transmembrane transporter activity (GO:0051980);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: transmembrane transport (GO:0055085);; "	--	Iron-phytosiderophore transporter yellow stripe 1 GN=YS1 OS=Zea mays (Maize) PE=2 SV=1	Uncharacterized protein GN=Si016547m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: iron-phytosiderophore transporter yellow stripe 1-like [Setaria italica]
comp412226_c0	0.003560093	2.51788755	up	--	--	--	--	--	--	--
comp225062_c0	0.003156567	2.138278935	up	--	--	--	--	--	Uncharacterized protein GN=Si032512m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Setaria italica]
comp214659_c3	6.86E-05	2.581124522	up	[C]	Energy production and conversion 	"Cellular Component: plastid (GO:0009536);; Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; "	K02639|2e-10|rcu:RCOM_1281630|Ferredoxin-3, chloroplast precursor, putative	Ferredoxin, root R-B1 OS=Raphanus sativus (Radish) PE=1 SV=1	Chloroplast ferredoxin-3 OS=Dimocarpus longan PE=2 SV=1	PREDICTED: ferredoxin-6, chloroplastic-like [Brachypodium distachyon]
comp221245_c5	0.000586106	-4.051922527	down	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: peptide receptor activity (GO:0001653);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: receptor-mediated endocytosis (GO:0006898);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0007178);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: embryo development (GO:0009790);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to UV-B (GO:0010224);; Biological Process: phloem transport (GO:0010233);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: hormone biosynthetic process (GO:0042446);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: amino acid import (GO:0043090);; Cellular Component: protein complex (GO:0043234);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: stamen development (GO:0048443);; Biological Process: tapetal cell differentiation (GO:0048657);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: regulation of seedling development (GO:1900140);; "	--	Serine/threonine-protein kinase BRI1-like 2 (Precursor) GN=F14H20.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g026940 GN=Sb01g026940 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: putative leucine-rich repeat receptor-like protein kinase family protein [Zea mays]
comp213159_c0	0.001612857	1.967584788	up	--	--	--	--	--	Uncharacterized protein (Fragment) GN=Si019705m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772596 [Setaria italica]
comp229149_c3	1.23E-08	3.986747755	up	--	--	"Molecular Function: metal ion binding (GO:0046872);; "	--	--	Uncharacterized protein GN=Si018078m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101767903 [Setaria italica]
comp237535_c0	0.000159698	2.702687237	up	--	--	--	--	--	--	--
comp182549_c0	0.004645636	2.478902918	up	--	--	--	--	--	--	--
comp219287_c0	0.007513875	1.748191029	up	--	--	--	--	--	Putative uncharacterized protein Sb10g002180 GN=131L1.10b OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g002180 [Sorghum bicolor] 
comp232873_c0	0.000162954	2.170342796	up	--	--	--	--	--	cDNA clone:J033125N22, full insert sequence GN=Os08g0431700 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101764107 [Setaria italica]
comp221634_c0	6.44E-15	4.278819317	up	--	--	--	--	--	Putative uncharacterized protein Sb01g030328 (Fragment) GN=Sb01g030328 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g030328 [Sorghum bicolor] 
comp221251_c0	3.31E-09	3.241727848	up	[P]	Inorganic ion transport and metabolism 	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: binding (GO:0005488);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: cell cycle (GO:0007049);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: system development (GO:0048731);; Biological Process: regulation of biological process (GO:0050789);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI2G10630 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g011150 [Sorghum bicolor] 
comp232267_c0	0.002669964	-1.942844866	down	--	--	--	--	--	Putative uncharacterized protein Sb03g011030 GN=Sb03g011030 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g011030 [Sorghum bicolor] 
comp186805_c0	0.00829445	-2.095063005	down	--	--	--	--	--	Uncharacterized protein GN=Si038101m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101780923 [Setaria italica]
comp218785_c0	0.001651283	1.993224077	up	[I]	Lipid transport and metabolism 	"Molecular Function: phospholipase D activity (GO:0004630);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Molecular Function: phosphatidylinositol-4,5-bisphosphate binding (GO:0005546);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: membrane lipid metabolic process (GO:0006643);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to aluminum ion (GO:0010044);; Cellular Component: membrane (GO:0016020);; Biological Process: lipid catabolic process (GO:0016042);; Biological Process: phosphatidylcholine catabolic process (GO:0034638);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: membrane lipid catabolic process (GO:0046466);; Biological Process: phosphatidylcholine metabolic process (GO:0046470);; Biological Process: regulation of cellular process (GO:0050794);; Molecular Function: NAPE-specific phospholipase D activity (GO:0070290);; "	--	Phospholipase D alpha 2 GN=P0481H08.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Phospholipase D GN=Sb05g027210 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_05g027210 [Sorghum bicolor] 
comp228339_c0	0.009497083	-1.766086906	down	[L]	Replication, recombination and repair 	"Biological Process: base-excision repair (GO:0006284);; Molecular Function: DNA-3-methyladenine glycosylase activity (GO:0008725);; Cellular Component: plastid (GO:0009536);; "	K01246|1e-105|sbi:SORBI_02g024850|hypothetical protein	--	Uncharacterized protein GN=Si031130m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755070 [Setaria italica]
comp233054_c0	0.004678159	1.799273602	up	[E]	Amino acid transport and metabolism 	--	--	--	Uncharacterized protein GN=Si038737m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: formimidoyltransferase-cyclodeaminase-like isoform X1 [Setaria italica]
comp216192_c0	0.000208882	2.146397371	up	[RTKL]	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: response to cold (GO:0009409);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: detection of external stimulus (GO:0009581);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to insect (GO:0009625);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to salt stress (GO:0071472);; "	--	L-type lectin-domain containing receptor kinase IV.1 (Precursor) GN=F13M22.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative receptor-type protein kinase LRK1 GN=OJ1606_D04.122 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	putative receptor-type protein kinase LRK1 [Oryza sativa Japonica Group]
comp208952_c1	0.002363769	-3.366032158	down	--	--	--	--	--	Uncharacterized protein GN=Si017766m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765176 [Setaria italica]
comp228927_c0	0.004162862	-1.882325797	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si004758m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein PRRC2C-like [Setaria italica]
comp130048_c0	2.42E-07	2.781379068	up	--	--	"Biological Process: response to reactive oxygen species (GO:0000302);; Cellular Component: chromatin (GO:0000785);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: high-affinity iron ion transport (GO:0006827);; Biological Process: cellular copper ion homeostasis (GO:0006878);; Biological Process: aging (GO:0007568);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: phenylpropanoid metabolic process (GO:0009698);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: specification of floral organ identity (GO:0010093);; Molecular Function: phosphatidylinositol-5-phosphate binding (GO:0010314);; Biological Process: gene silencing (GO:0016458);; Molecular Function: superoxide dismutase copper chaperone activity (GO:0016532);; Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);; Biological Process: metal ion transport (GO:0030001);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: intracellular transport (GO:0046907);; Cellular Component: apoplast (GO:0048046);; Biological Process: histone H3-K4 methylation (GO:0051568);; "	--	Heavy metal-associated isoprenylated plant protein 26 (Precursor) GN=F20M13.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g035070 GN=Sb03g035070 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_715393 [Zea mays]
comp179639_c0	1.06E-07	-4.646238	down	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: DNA replication (GO:0006260);; Biological Process: DNA replication initiation (GO:0006270);; Biological Process: regulation of DNA replication (GO:0006275);; Biological Process: cell proliferation (GO:0008283);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: regulation of G2/M transition of mitotic cell cycle (GO:0010389);; Biological Process: histone phosphorylation (GO:0016572);; Biological Process: regulation of cell cycle (GO:0051726);; "	--	F-box protein At1g10780 GN=At1g10780 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si013814m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: F-box protein At1g10780-like [Setaria italica]
comp129461_c0	7.26E-06	-2.939737719	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: cytokinin biosynthetic process (GO:0009691);; "	--	--	Uncharacterized protein GN=Si024939m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: skin secretory protein xP2-like [Setaria italica]
comp164685_c0	4.91E-06	2.603359566	up	--	--	"Molecular Function: cyclin-dependent protein kinase inhibitor activity (GO:0004861);; Molecular Function: protein binding (GO:0005515);; Biological Process: negative regulation of protein serine/threonine kinase activity (GO:0071901);; "	--	Cyclin-dependent protein kinase inhibitor EL2 GN=OsJ_09102 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si039635m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Setaria italica]
comp194705_c0	0.009491534	-1.758435402	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: intracellular part (GO:0044424);; Biological Process: root development (GO:0048364);; Biological Process: developmental growth (GO:0048589);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si031302m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein app1-like [Setaria italica]
comp174684_c0	0.000151298	4.079328203	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: protein folding (GO:0006457);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: water transport (GO:0006833);; Biological Process: defense response (GO:0006952);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: protein secretion (GO:0009306);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: flower development (GO:0009908);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: negative regulation of seed germination (GO:0010187);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: leaf development (GO:0048366);; Biological Process: protein stabilization (GO:0050821);; Molecular Function: unfolded protein binding (GO:0051082);; Biological Process: cellular response to calcium ion (GO:0071277);; Biological Process: stomatal closure (GO:0090332);; "	K04079|9e-67|pop:POPTR_550613|hypothetical protein	Heat shock protein 82 (Fragment) GN=HSP82 OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1	Heat shock protein 90-2 (Fragment) GN=Hsp90-2 OS=Cryptocoryne ciliata PE=1 SV=1	heat shock protein 90-2 [Cryptocoryne ciliata]
comp221779_c0	0.002571901	-1.946868982	down	[E]	Amino acid transport and metabolism 	"Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: protein acetylation (GO:0006473);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: response to cytokinin stimulus (GO:0009735);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si007019m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: homeobox-leucine zipper protein HOX2-like [Setaria italica]
comp233854_c1	4.37E-05	2.37167979	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: response to stress (GO:0006950);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: methylation (GO:0032259);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	--	Probable methyltransferase PMT18 GN=At1g33170 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si034645m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable methyltransferase PMT18-like isoform X1 [Setaria italica]
comp221080_c1	6.65E-05	4.188225494	up	--	--	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: protein folding (GO:0006457);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: water transport (GO:0006833);; Biological Process: response to stress (GO:0006950);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Cellular Component: fungal-type cell wall (GO:0009277);; Biological Process: protein secretion (GO:0009306);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: flower development (GO:0009908);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: negative regulation of seed germination (GO:0010187);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: calcium-mediated signaling (GO:0019722);; Cellular Component: cell septum (GO:0030428);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: leaf development (GO:0048366);; Biological Process: protein stabilization (GO:0050821);; Molecular Function: unfolded protein binding (GO:0051082);; Biological Process: cellular response to calcium ion (GO:0071277);; Biological Process: stomatal closure (GO:0090332);; "	K04079|1e-110|vvi:100261759|similar to heat shock protein 90	Heat shock cognate protein 80 GN=HSC80 OS=Solanum lycopersicum (Tomato) PE=2 SV=1	Uncharacterized protein OS=Lotus japonicus (Lotus corniculatus var. japonicus) PE=2 SV=1	unknown [Lotus japonicus]
comp229970_c0	0.000683588	2.050839059	up	--	--	"Biological Process: exocytosis (GO:0006887);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: cell periphery (GO:0071944);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si000784m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755711 [Setaria italica]
comp173465_c0	0.00733302	1.786378882	up	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: MAPK cascade (GO:0000165);; Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: regulation of long-day photoperiodism, flowering (GO:0048586);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: transmembrane receptor protein serine/threonine kinase binding (GO:0070696);; "	--	U-box domain-containing protein 4 GN=PUB4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Putative uncharacterized protein Sb03g041930 GN=Sb03g041930 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g041930 [Sorghum bicolor] 
comp186291_c0	0.005775066	-3.218168725	down	--	--	--	--	DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si001881m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101777321 isoform X2 [Setaria italica]
comp230952_c0	2.25E-06	2.727376864	up	[GEPR]	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein folding (GO:0006457);; Biological Process: purine nucleobase transport (GO:0006863);; Molecular Function: sucrose:hydrogen symporter activity (GO:0008506);; Biological Process: response to heat (GO:0009408);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: monosaccharide transmembrane transporter activity (GO:0015145);; Biological Process: nitrate transport (GO:0015706);; Biological Process: monosaccharide transport (GO:0015749);; Biological Process: sucrose transport (GO:0015770);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: transmembrane transport (GO:0055085);; "	--	Sugar carrier protein C GN=STC OS=Ricinus communis (Castor bean) PE=2 SV=1	Putative uncharacterized protein Sb02g036310 GN=Sb02g036310 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_02g036310 [Sorghum bicolor] 
comp174039_c0	0.008899718	-2.564519466	down	[D]	Cell cycle control, cell division, chromosome partitioning 	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si005185m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101763686 [Setaria italica]
comp182488_c0	0.001115928	-3.951682701	down	--	--	"Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: hormone activity (GO:0005179);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: growth (GO:0040007);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Protein RALF-like 1 (Precursor) GN=F22D16.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g044930 GN=Sb03g044930 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g044930 [Sorghum bicolor] 
comp216364_c0	0.002226395	-2.187539563	down	--	--	--	--	--	Putative uncharacterized protein GN=OsI_29134 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	hypothetical protein OsI_29134 [Oryza sativa Indica Group]
comp217636_c0	0.000481676	-2.742606858	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: glucuronoxylan glucuronosyltransferase activity (GO:0080116);; "	--	Probable glucuronosyltransferase Os01g0926700 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si022143m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable glucuronosyltransferase Os01g0926700-like [Setaria italica]
comp122920_c0	0.002359889	-2.106705484	down	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb06g020270 GN=Sb06g020270 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g020270 [Sorghum bicolor] 
comp195719_c0	0.000134799	-2.278550955	down	--	--	"Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	putative RING zinc finger domain superfamily protein [Zea mays]
comp165967_c0	9.41E-07	2.856381299	up	--	--	"Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: cell death (GO:0008219);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to biotic stimulus (GO:0009607);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	MLO-like protein 1 GN=T10P11.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	MLO-like protein GN=Si017007m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: MLO-like protein 1-like [Setaria italica]
comp206811_c0	1.86E-05	2.38401414	up	--	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Blue copper protein (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1	Uncharacterized protein GN=BRADI4G05260 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: mavicyanin-like [Brachypodium distachyon]
comp232304_c0	1.71E-05	2.409405417	up	[E]	Amino acid transport and metabolism 	"Biological Process: metabolic process (GO:0008152);; Molecular Function: transaminase activity (GO:0008483);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: cellular metabolic process (GO:0044237);; "	--	Cysteine desulfurase 2, chloroplastic (Precursor) GN=T27G7.17 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si012234m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: uncharacterized protein LOC101774268 [Setaria italica]
comp173425_c0	0.002142446	-1.991613004	down	[R]	General function prediction only 	"Biological Process: cellular process (GO:0009987);; Cellular Component: nuclear lumen (GO:0031981);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100275514 [Zea mays] 
comp194501_c0	3.00E-05	4.289476777	up	--	--	--	--	--	--	--
comp217260_c1	0.00069991	2.09354644	up	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: photoprotection (GO:0010117);; Biological Process: response to chitin (GO:0010200);; Biological Process: photosynthesis (GO:0015979);; Biological Process: multicellular organism growth (GO:0035264);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: phosphate ion homeostasis (GO:0055062);; Biological Process: regulation of root development (GO:2000280);; "	--	Zinc finger protein 1 OS=Triticum aestivum (Wheat) PE=2 SV=1	Uncharacterized protein GN=Si037395m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger protein 1-like [Setaria italica]
comp229727_c8	0.000612396	-2.106482905	down	[S]	Function unknown 	"Biological Process: polysaccharide catabolic process (GO:0000272);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: meristem initiation (GO:0010014);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: procambium histogenesis (GO:0010067);; Biological Process: regulation of floral meristem growth (GO:0010080);; Biological Process: xylem development (GO:0010089);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: anther development (GO:0048653);; Biological Process: specification of floral organ number (GO:0048833);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Biological Process: regulation of seed maturation (GO:2000034);; "	--	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor) GN=PXL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si019854m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Setaria italica]
comp191470_c0	0.005146143	2.295079812	up	--	--	--	--	--	--	--
comp193269_c0	0.002118627	2.378011401	up	--	--	--	--	--	Putative uncharacterized protein Sb06g003115 (Fragment) GN=Sb06g003115 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g003115 [Sorghum bicolor] 
comp171615_c0	0.001542596	-2.196155217	down	[E]	Amino acid transport and metabolism 	"Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to nitrate (GO:0010167);; Biological Process: phloem transport (GO:0010233);; Biological Process: response to organic cyclic compound (GO:0014070);; Molecular Function: nitrate transmembrane transporter activity (GO:0015112);; Molecular Function: high affinity oligopeptide transporter activity (GO:0015334);; Biological Process: nitrate transport (GO:0015706);; Biological Process: proline transport (GO:0015824);; Biological Process: chlorophyll catabolic process (GO:0015996);; Biological Process: metal ion transport (GO:0030001);; Biological Process: macromolecule localization (GO:0033036);; Molecular Function: dipeptide transporter activity (GO:0042936);; Molecular Function: tripeptide transporter activity (GO:0042937);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: tripeptide transport (GO:0042939);; Biological Process: response to amino acid stimulus (GO:0043200);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: intracellular transport (GO:0046907);; Molecular Function: low affinity nitrate transmembrane transporter activity (GO:0080054);; Biological Process: low affinity nitrate transport (GO:0080055);; "	--	Nitrate transporter 1.5 GN=NRT1.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si016684m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: nitrate transporter 1.5-like isoform X2 [Setaria italica]
comp208394_c0	0.005696455	2.203486791	up	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: embryo development (GO:0009790);; Biological Process: response to inorganic substance (GO:0010035);; Molecular Function: ubiquitin conjugating enzyme binding (GO:0031624);; Biological Process: negative regulation of organ growth (GO:0046621);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: floral organ development (GO:0048437);; Biological Process: protein autoubiquitination (GO:0051865);; "	--	E3 ubiquitin-protein ligase RING1-like GN=At3g19950 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein (Fragment) GN=Si012631m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Setaria italica]
comp223513_c0	0.000428942	-2.151228496	down	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si009863m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_127678 [Zea mays]
comp232963_c3	0.000231536	-4.190321748	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: defense response (GO:0006952);; Biological Process: lignan biosynthetic process (GO:0009807);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: biological regulation (GO:0065007);; "	--	Dirigent protein 21 (Precursor) GN=DIR21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=TRIUR3_14289 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	hypothetical protein TRIUR3_14289 [Triticum urartu]
comp198977_c0	9.20E-05	-3.840759278	down	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: signal transduction (GO:0007165);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	F-box only protein 13 GN=FBX13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si029925m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: F-box only protein 13-like [Setaria italica]
comp227229_c0	2.41E-05	2.527352661	up	[G]	Carbohydrate transport and metabolism 	"Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: alpha-glucosidase activity (GO:0004558);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: cellular glucan metabolic process (GO:0006073);; Cellular Component: plastid (GO:0009536);; Biological Process: hemicellulose metabolic process (GO:0010410);; Molecular Function: carbohydrate binding (GO:0030246);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Putative alpha-xylosidase 2 (Precursor) GN=XYL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=5 SV=1	Uncharacterized protein GN=Si000237m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative alpha-xylosidase 2-like [Setaria italica]
comp225387_c1	6.84E-05	-2.644699895	down	[R]	General function prediction only 	"Molecular Function: catalytic activity (GO:0003824);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cell redox homeostasis (GO:0045454);; "	--	Inactive TPR repeat-containing thioredoxin TTL3 GN=F14N22.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si000549m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Setaria italica]
comp227590_c0	2.08E-09	3.174127321	up	[E]	Amino acid transport and metabolism 	"Biological Process: tryptophan biosynthetic process (GO:0000162);; Biological Process: MAPK cascade (GO:0000165);; Molecular Function: tryptophan synthase activity (GO:0004834);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: gravitropism (GO:0009630);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: negative regulation of defense response (GO:0031348);; Molecular Function: indole-3-glycerol-phosphate lyase activity (GO:0033984);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; "	K13222|1e-142|sbi:SORBI_01g005150|hypothetical protein	Indole-3-glycerol phosphate lyase, chloroplastic (Precursor) GN=BX1 OS=Zea mays (Maize) PE=1 SV=2	Uncharacterized protein GN=Si036532m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic-like [Setaria italica]
comp304159_c0	2.46E-05	-2.88495853	down	--	--	--	--	--	Uncharacterized protein GN=Si001137m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781902 [Setaria italica]
comp215439_c0	0.001478572	2.175580302	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Putative uncharacterized protein Sb01g009060 GN=Sb01g009060 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g009060 [Sorghum bicolor] 
comp218019_c0	0.000314052	-4.145647783	down	--	--	--	--	--	Uncharacterized protein GN=Si026388m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp228260_c0	7.89E-14	6.168064017	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: translational elongation (GO:0006414);; "	K03234|0.0|vvi:100261253|similar to elongation factor 2	Elongation factor 2 OS=Beta vulgaris (Sugar beet) PE=2 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp229423_c1	0.003476576	-2.073471256	down	--	--	"Cellular Component: membrane (GO:0016020);; "	--	DEAD-box ATP-dependent RNA helicase 42 GN=RH42 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb08g019150 GN=Sb08g019150 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g019150 [Sorghum bicolor] 
comp222694_c0	0.000198375	-3.454558896	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein GN=AURANDRAFT_71909 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_71909 [Aureococcus anophagefferens]
comp201859_c0	1.97E-12	4.003344929	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein [Zea mays] 
comp232098_c0	0.002228923	1.989459009	up	[S]	Function unknown 	"Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI1G58380 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: uncharacterized membrane protein C24H6.13-like [Brachypodium distachyon]
comp227418_c1	0.001904346	-1.991713425	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cell part (GO:0044464);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si036780m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781327 [Setaria italica]
comp169534_c0	0.003945815	1.885115087	up	--	--	--	--	GLABRA2 expression modulator GN=GEM OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative FH protein interacting protein FIP1 GN=P0594D10.123 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os07g0621300 [Oryza sativa Japonica Group] 
comp234485_c3	6.03E-12	-5.599222563	down	--	--	--	--	--	Uncharacterized protein OS=Vicia faba (Broad bean) PE=4 SV=1	hypothetical protein (mitochondrion) [Vicia faba] 
comp123305_c0	4.45E-05	4.239739206	up	[J]	Translation, ribosomal structure and biogenesis 	"Cellular Component: ribosome (GO:0005840);; Cellular Component: plastid (GO:0009536);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: organic substance metabolic process (GO:0071704);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	K02967|6e-65|ppp:PhpapaCp057|rps2	Cyanelle 30S ribosomal protein S2 GN=rps2 OS=Cyanophora paradoxa PE=3 SV=1	30S ribosomal protein S2 GN=rps2 OS=Emiliania huxleyi (Pontosphaera huxleyi) PE=3 SV=1	ribosomal protein S2 [Cyanophora paradoxa] 
comp220670_c0	3.09E-08	3.047523495	up	--	--	"Cellular Component: 1,3-beta-D-glucan synthase complex (GO:0000148);; Molecular Function: 1,3-beta-D-glucan synthase activity (GO:0003843);; Cellular Component: prospore membrane (GO:0005628);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: (1->3)-beta-D-glucan biosynthetic process (GO:0006075);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: ascospore wall assembly (GO:0030476);; Cellular Component: actin cortical patch (GO:0030479);; Biological Process: positive regulation of endocytosis (GO:0045807);; "	--	Acidic leucine-rich nuclear phosphoprotein 32-related protein GN=At3g50690 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein GN=ARALYDRAFT_485417 OS=Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) PE=4 SV=1	beta-(1,3)-glucan synthase [Lewia infectoria]
comp333331_c0	3.00E-05	4.289476777	up	--	--	--	--	--	--	--
comp226093_c0	6.48E-05	-2.938729409	down	[V]	Defense mechanisms 	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: drug transmembrane transport (GO:0006855);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to hormone stimulus (GO:0009725);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: regulation of biological quality (GO:0065008);; Cellular Component: cell periphery (GO:0071944);; "	--	MATE efflux family protein 5 GN=F3L12.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Putative uncharacterized protein GN=OsI_14245 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	hypothetical protein OsI_14245 [Oryza sativa Indica Group]
comp190186_c0	1.60E-05	2.430291895	up	--	--	--	--	--	Uncharacterized protein GN=Si002203m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 53-like [Setaria italica]
comp210008_c0	0.000147098	-2.492488837	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: arsenate reductase (glutaredoxin) activity (GO:0008794);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to cold (GO:0009409);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: anther development (GO:0048653);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; "	--	Glutaredoxin-C7 GN=OSJNBa0007C23.5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb09g006140 GN=Sb09g006140 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: glutaredoxin-C7-like [Setaria italica]
comp124396_c0	6.55E-06	-3.886847119	down	--	--	--	--	--	Putative uncharacterized protein Sb07g001510 GN=Sb07g001510 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g001510 [Sorghum bicolor] 
comp232642_c0	0.000285889	2.190591691	up	--	--	"Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; "	--	--	Putative uncharacterized protein B1110B01.1 GN=B1110B01.1 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os05g0440050 [Oryza sativa Japonica Group] 
comp184459_c0	1.02E-09	5.372385283	up	--	--	--	--	--	--	--
comp222519_c0	1.65E-05	2.41960737	up	--	--	--	--	--	Uncharacterized protein (Fragment) GN=Si020111m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765457 [Setaria italica]
comp228893_c1	0.004096545	2.165046965	up	--	--	"Cellular Component: cell part (GO:0044464);; "	--	CASP-like protein Sb04g002820 GN=Sb04g002820 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	Dof-type zinc finger protein 13 GN=Dof13 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: dof zinc finger protein DOF1.6-like [Setaria italica]
comp232068_c2	0.006133771	-3.665591194	down	--	--	"Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	SKIP interacting protein 23 (Fragment) GN=SIP23 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	SKIP interacting protein 23 [Oryza sativa]
comp213957_c1	0.005728706	-2.17840678	down	[RTKL]	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to chitin (GO:0010200);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: recognition of pollen (GO:0048544);; "	--	Putative serine/threonine-protein kinase receptor (Precursor) GN=SRK6 OS=Brassica oleracea var. acephala (Flowering kale) PE=2 SV=2	Serine/threonine-protein kinase GN=Sb02g009580 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_02g009580 [Sorghum bicolor] 
comp234138_c1	1.82E-07	-2.997490201	down	[R]	General function prediction only 	"Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: regulation of cellular process (GO:0050794);; Cellular Component: cell periphery (GO:0071944);; "	--	Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si002050m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X3 [Setaria italica]
comp201664_c0	2.18E-05	3.667060246	up	--	--	"Cellular Component: nucleolus (GO:0005730);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (GO:0016628);; Cellular Component: preribosome, large subunit precursor (GO:0030687);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	--	Uncharacterized protein GN=EMIHUDRAFT_111927 OS=Emiliania huxleyi CCMP1516 PE=4 SV=1	RecName: Full=rRNA-processing protein CGR1
comp211941_c0	0.000187255	-2.463497988	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: stomatal complex development (GO:0010374);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: iron ion homeostasis (GO:0055072);; "	--	Transcription factor bHLH100 GN=F13H10.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002720m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor ORG3-like isoform X1 [Setaria italica]
comp229888_c1	0.000107096	2.226098106	up	[R]	General function prediction only 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: iron ion transport (GO:0006826);; Cellular Component: plastid (GO:0009536);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: blue light signaling pathway (GO:0009785);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: petal morphogenesis (GO:0048446);; "	--	Pirin-like protein OS=Solanum lycopersicum (Tomato) PE=2 SV=1	Putative uncharacterized protein Sb07g015030 GN=Sb07g015030 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_07g015030 [Sorghum bicolor] 
comp223421_c0	0.000171369	2.20727845	up	--	--	--	--	--	Ethylene responsive transcription factor GN=ERF3 OS=Saccharum officinarum (Sugarcane) PE=2 SV=1	ethylene responsive transcription factor [Saccharum officinarum]
comp214516_c0	0.004313804	-3.727528392	down	--	--	--	--	--	--	--
comp198445_c0	0.000125197	2.226895735	up	--	--	--	--	--	Uncharacterized protein GN=Si038170m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781717 [Setaria italica]
comp215587_c1	1.08E-05	-4.116121393	down	--	--	"Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: defense response (GO:0006952);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb04g012650 GN=Sb04g012650 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: protein IQ-DOMAIN 1-like [Setaria italica]
comp219290_c3	0.002961073	2.032275228	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: negative regulation of biological process (GO:0048519);; "	--	Probable WRKY transcription factor 66 GN=WRKY66 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002401m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 38-like [Setaria italica]
comp222123_c1	8.24E-06	-2.80652982	down	--	--	"Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ion transport (GO:0006811);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: organelle organization (GO:0006996);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: protein autoprocessing (GO:0016540);; Biological Process: response to hydrogen peroxide (GO:0042542);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: positive regulation of programmed cell death (GO:0043068);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Metacaspase-4 subunit p10 GN=YUP8H12R.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si022182m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: metacaspase-4-like [Setaria italica]
comp229101_c3	0.003156567	2.138278935	up	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleus (GO:0005634);; Biological Process: mRNA processing (GO:0006397);; Biological Process: mitosis (GO:0007067);; Biological Process: RNA splicing (GO:0008380);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: lipid storage (GO:0019915);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: photoperiodism, flowering (GO:0048573);; Biological Process: response to freezing (GO:0050826);; "	K12836|1e-124|osa:4339621|Os05g0564200	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=OB05G33390 OS=Oryza brachyantha PE=4 SV=1	Os05g0564200 [Oryza sativa Japonica Group] 
comp224813_c0	9.65E-05	-2.405410147	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: xylosyltransferase activity (GO:0042285);; "	--	Probable glucuronosyltransferase Os05g0123100 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si022408m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable glucuronosyltransferase Os05g0123100-like [Setaria italica]
comp217267_c0	3.39E-05	2.424371855	up	--	--	"Biological Process: cell fate specification (GO:0001708);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: organelle organization (GO:0006996);; Biological Process: response to cold (GO:0009409);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: response to organic substance (GO:0010033);; Biological Process: stomatal lineage progression (GO:0010440);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: shoot development (GO:0048367);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: reproductive structure development (GO:0048608);; "	--	Transcription factor bHLH18 GN=T30L20.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si036393m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor bHLH18-like [Setaria italica]
comp232795_c0	0.003136844	2.000459399	up	--	--	"Molecular Function: endonuclease activity (GO:0004519);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: chromosome segregation (GO:0007059);; Biological Process: meiosis I (GO:0007127);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to salt stress (GO:0009651);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Biological Process: cytidine to uridine editing (GO:0016554);; Biological Process: chloroplast RNA processing (GO:0031425);; Biological Process: polycistronic mRNA processing (GO:0031426);; Biological Process: regulation of organelle organization (GO:0033043);; Biological Process: posttranscriptional gene silencing by RNA (GO:0035194);; Biological Process: growth (GO:0040007);; Biological Process: leaf development (GO:0048366);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: chromosome organization (GO:0051276);; Biological Process: production of small RNA involved in gene silencing by RNA (GO:0070918);; Biological Process: mitochondrial mRNA modification (GO:0080156);; "	--	Putative pentatricopeptide repeat-containing protein At1g56570 GN=PCMP-E64 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=BRADI2G11440 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570-like [Setaria italica]
comp200313_c0	0.004271602	-3.269159058	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: transferase activity (GO:0016740);; Biological Process: sterigmatocystin biosynthetic process (GO:0045461);; Biological Process: emericellamide biosynthetic process (GO:1900557);; Biological Process: o-orsellinic acid biosynthetic process (GO:1900584);; Biological Process: monodictyphenone biosynthetic process (GO:1900815);; "	--	--	Nonribosomal peptide synthetase/polyketide synthase hybrid OS=Karenia brevis (Dinoflagellate) PE=4 SV=1	polyketide synthase [Mycosphaerella pini] 
comp130410_c0	0.007521634	1.837983939	up	--	--	--	--	--	Putative uncharacterized protein OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	hypothetical protein [Arabidopsis thaliana]
comp207156_c0	0.000127576	-4.275722224	down	[K]	Transcription 	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: cellular process (GO:0009987);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; "	--	DNA-directed RNA polymerase II subunit RPB1 GN=F4B14.70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Uncharacterized protein GN=Gasu_44470 OS=Galdieria sulphuraria (Red alga) PE=4 SV=1	hypothetical protein Gasu_44470 [Galdieria sulphuraria]
comp221826_c0	0.007824043	-1.967476203	down	--	--	--	--	--	Putative uncharacterized protein Sb04g030270 GN=Sb04g030270 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g030270 [Sorghum bicolor] 
comp191412_c1	0.005901163	-2.448541753	down	[C]	Energy production and conversion 	"Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: polar nucleus fusion (GO:0010197);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: apoplast (GO:0048046);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Reticuline oxidase-like protein (Precursor) GN=At4g20830 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb10g021670 GN=Sb10g021670 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g021670 [Sorghum bicolor] 
comp214089_c2	0.001115928	-3.951682701	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: chloroplast organization (GO:0009658);; Cellular Component: cortical endoplasmic reticulum (GO:0032541);; "	--	Protein MIZU-KUSSEI 1 GN=MIZ1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g029410 GN=Sb09g029410 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g029410 [Sorghum bicolor] 
comp222040_c0	0.001158953	-2.09042092	down	--	--	--	--	--	--	--
comp227555_c0	0.00467042	1.894584374	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to hypoxia (GO:0001666);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to insect (GO:0009625);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: negative regulation of leaf senescence (GO:1900056);; "	--	Probable WRKY transcription factor 53 GN=WRKY53 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si022843m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 53-like isoform X1 [Setaria italica]
comp212122_c0	1.32E-05	3.078408454	up	--	--	--	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein [Zea mays]
comp227113_c0	3.52E-06	2.548509644	up	--	--	"Molecular Function: procollagen-proline 4-dioxygenase activity (GO:0004656);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: L-ascorbic acid binding (GO:0031418);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00472|1e-143|sbi:SORBI_01g004670|hypothetical protein	--	Uncharacterized protein GN=Si036801m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Setaria italica]
comp230694_c1	0.00061059	2.089215007	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: monosaccharide metabolic process (GO:0005996);; Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460);; Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: mucilage biosynthetic process (GO:0010192);; Biological Process: seed coat development (GO:0010214);; Biological Process: response to UV-B (GO:0010224);; Biological Process: UDP-rhamnose biosynthetic process (GO:0010253);; Molecular Function: UDP-L-rhamnose synthase activity (GO:0010280);; Biological Process: auxin efflux (GO:0010315);; Molecular Function: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity (GO:0010489);; Molecular Function: UDP-4-keto-rhamnose-4-keto-reductase activity (GO:0010490);; Cellular Component: organelle membrane (GO:0031090);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226);; Molecular Function: UDP-glucose 4,6-dehydratase activity (GO:0050377);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: flavonol biosynthetic process (GO:0051555);; "	K12450|0.0|sbi:SORBI_01g039340|hypothetical protein	Probable rhamnose biosynthetic enzyme 3 GN=RHM3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g039340 GN=Sb01g039340 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g039340 [Sorghum bicolor] 
comp209225_c1	0.00013197	3.699107811	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: carbohydrate biosynthetic process (GO:0016051);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Biological Process: localization (GO:0051179);; Biological Process: cellular response to cold (GO:0070417);; Biological Process: cellular response to desiccation (GO:0071465);; "	--	Galactinol synthase 2 GN=GOLS2 OS=Solanum lycopersicum (Tomato) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os03g0316200 [Oryza sativa Japonica Group] 
comp184078_c1	0.007779206	1.756927839	up	--	--	--	--	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	hypothetical protein OsI_04835 [Oryza sativa Indica Group]
comp221168_c0	0.007625522	-1.863281661	down	[R]	General function prediction only 	"Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to bacterium (GO:0009617);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: cellular response to sulfate starvation (GO:0009970);; Biological Process: cyanide metabolic process (GO:0019499);; Biological Process: glucosinolate catabolic process (GO:0019762);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: cyanoalanine nitrilase activity (GO:0047427);; Molecular Function: 3-cyanoalanine hydratase activity (GO:0047558);; Cellular Component: apoplast (GO:0048046);; Biological Process: detoxification of nitrogen compound (GO:0051410);; Molecular Function: indole-3-acetonitrile nitrilase activity (GO:0080061);; Molecular Function: indole-3-acetonitrile nitrile hydratase activity (GO:0080109);; "	--	Bifunctional nitrilase/nitrile hydratase NIT4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb06g023120 GN=Sb06g023120 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g023120 [Sorghum bicolor] 
comp221926_c0	0.001947749	-2.803830609	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Biological Process: trans-zeatin biosynthetic process (GO:0033466);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Secologanin synthase GN=CYP72A1 OS=Catharanthus roseus (Madagascar periwinkle) PE=2 SV=1	Putative uncharacterized protein Sb03g028610 GN=Sb03g028610 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g028610 [Sorghum bicolor] 
comp226141_c0	0.009169231	-1.982758604	down	--	--	"Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: transporter activity (GO:0005215);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to stress (GO:0006950);; Biological Process: response to nematode (GO:0009624);; Biological Process: phloem transport (GO:0010233);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: response to acidity (GO:0010447);; Molecular Function: nitrate efflux transmembrane transporter activity (GO:0010542);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Biological Process: metal ion transport (GO:0030001);; Biological Process: xylan biosynthetic process (GO:0045492);; Molecular Function: low affinity nitrate transmembrane transporter activity (GO:0080054);; Biological Process: low affinity nitrate transport (GO:0080055);; "	--	Probable nitrate excretion transporter 3 GN=At3g45680 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: nitrate excretion transporter 1-like [Setaria italica]
comp207869_c0	1.85E-09	3.225467064	up	[M]	Cell wall/membrane/envelope biogenesis 	"Biological Process: response to molecule of fungal origin (GO:0002238);; Cellular Component: vacuole (GO:0005773);; Biological Process: response to stress (GO:0006950);; "	--	Universal stress protein A-like protein GN=At3g01520 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb01g037580 GN=Sb01g037580 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g037580 [Sorghum bicolor] 
comp177225_c0	8.37E-08	2.936383923	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; "	--	--	Uncharacterized protein GN=Si020426m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101777902 [Setaria italica]
comp228739_c0	0.003000283	-2.0344938	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	U-box domain-containing protein 7 GN=PUB7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein OJ1735_C10.19 GN=OJ1268_B08.1 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein [Oryza sativa Japonica Group] 
comp196163_c0	0.001125883	2.059555433	up	--	--	--	--	DeSI-like protein At4g17486 GN=At4g17486 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g036920 GN=Sb04g036920 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g036920 [Sorghum bicolor] 
comp225894_c2	0.00573956	2.38174227	up	--	--	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to blue light (GO:0009637);; Biological Process: flower development (GO:0009908);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: meristem development (GO:0048507);; Biological Process: developmental cell growth (GO:0048588);; Biological Process: regulation of biological process (GO:0050789);; "	--	BTB/POZ domain-containing protein At5g67385 GN=At5g67385 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp163514_c0	0.003270474	-2.15001516	down	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: abscisic acid glucosyltransferase activity (GO:0010294);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Molecular Function: flavonol 3-O-glucosyltransferase activity (GO:0047893);; Molecular Function: trans-zeatin O-beta-D-glucosyltransferase activity (GO:0050403);; Molecular Function: cis-zeatin O-beta-D-glucosyltransferase activity (GO:0050502);; Biological Process: flavonol biosynthetic process (GO:0051555);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; "	--	UDP-glycosyltransferase 73C5 GN=F13K3.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=BRADI1G61897 OS=Brachypodium distachyon (Purple false brome) PE=3 SV=1	PREDICTED: UDP-glycosyltransferase 73C5-like [Brachypodium distachyon]
comp230208_c0	0.00551548	1.808109756	up	[EH]	--	"Biological Process: glutamine metabolic process (GO:0006541);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: auxin biosynthetic process (GO:0009851);; Molecular Function: lyase activity (GO:0016829);; "	K01658|1e-174|zma:100286252|anthranilate synthase component II	Anthranilate synthase component II GN=trpG OS=Cyanophora paradoxa PE=3 SV=1	Anthranilate synthase component II OS=Zea mays (Maize) PE=2 SV=1	TPA: putative anthranilate synthase component II [Zea mays]
comp234836_c0	0.001235118	1.962004793	up	[S]	Function unknown 	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: transport (GO:0006810);; Biological Process: defense response (GO:0006952);; Biological Process: immune response (GO:0006955);; Biological Process: epidermis development (GO:0008544);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Biological Process: response to bacterium (GO:0009617);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Cellular Component: membrane (GO:0016020);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular component morphogenesis (GO:0032989);; Biological Process: response to lipid (GO:0033993);; Molecular Function: signaling receptor activity (GO:0038023);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: external encapsulating structure organization (GO:0045229);; Biological Process: stamen development (GO:0048443);; Biological Process: meristem development (GO:0048507);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Molecular Function: organic cyclic compound binding (GO:0097159);; Biological Process: response to alcohol (GO:0097305);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) GN=GSO1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si000235m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g027080 [Sorghum bicolor] 
comp228863_c0	0.002639703	1.950550531	up	[E]	Amino acid transport and metabolism 	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: methionine metabolic process (GO:0006555);; Biological Process: methionine biosynthetic process (GO:0009086);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: carbon-sulfur lyase activity (GO:0016846);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Biological Process: cellular response to stress (GO:0033554);; "	K01739|0.0|sbi:SORBI_01g023050|hypothetical protein	Cystathionine gamma-synthase, chloroplastic (Precursor) GN=T4P13.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein GN=Si039843m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Setaria italica] 
comp221667_c0	2.25E-09	3.161747221	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protease binding (GO:0002020);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: protein folding (GO:0006457);; Biological Process: response to stress (GO:0006950);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to virus (GO:0009615);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: heat acclimation (GO:0010286);; Cellular Component: nuclear matrix (GO:0016363);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: cytosolic ribosome (GO:0022626);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: response to karrikin (GO:0080167);; "	K03283|1e-124|osa:4332420|Os03g0277300	Heat shock 70 kDa protein GN=HSP70 OS=Achlya klebsiana PE=2 SV=1	Heat shock protein 70-2 GN=HSP70-2 OS=Nicotiana tabacum (Common tobacco) PE=3 SV=1	heat shock protein 70a [Coniothyrium minitans]
comp230013_c0	8.16E-05	2.314533174	up	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Biological Process: response to stress (GO:0006950);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: embryo development (GO:0009790);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: ubiquitin conjugating enzyme binding (GO:0031624);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: negative regulation of organ growth (GO:0046621);; Biological Process: floral organ development (GO:0048437);; Biological Process: protein autoubiquitination (GO:0051865);; "	--	E3 ubiquitin ligase BIG BROTHER-related GN=BBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si001038m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase Arkadia-like [Setaria italica]
comp173504_c0	0.006963498	-2.737393413	down	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: cellular glucan metabolic process (GO:0006073);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: xylem development (GO:0010089);; Biological Process: response to chitin (GO:0010200);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Molecular Function: xyloglucan-specific endo-beta-1,4-glucanase activity (GO:0033946);; Biological Process: cell wall modification (GO:0042545);; Cellular Component: apoplast (GO:0048046);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: primary root development (GO:0080022);; Molecular Function: xyloglucan endotransglucosylase activity (GO:0080039);; "	--	Probable xyloglucan endotransglucosylase/hydrolase protein 15 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb06g027660 GN=Sb06g027660 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g027660 [Sorghum bicolor] 
comp233327_c1	5.21E-10	3.322871185	up	[RTKL]	--	"Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to nutrient (GO:0007584);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: potassium ion import (GO:0010107);; Biological Process: stomatal movement (GO:0010118);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to mannitol stimulus (GO:0010555);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: cellular response to water deprivation (GO:0042631);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: regulation of potassium ion transport (GO:0043266);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: root development (GO:0048364);; Biological Process: cellular response to potassium ion starvation (GO:0051365);; Biological Process: potassium ion homeostasis (GO:0055075);; "	--	CBL-interacting protein kinase 9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized LOC100381968 [Zea mays] 
comp166940_c0	0.004354552	1.805718621	up	--	--	--	K13464|7e-27|zma:100284979|ZIM motif family protein	--	ZIM motif family protein OS=Zea mays (Maize) PE=2 SV=1	ZIM motif family protein [Zea mays] 
comp231776_c0	6.91E-05	-2.349417399	down	--	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: RNA processing (GO:0006396);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036495m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772536 [Setaria italica]
comp216910_c1	4.67E-05	2.298707245	up	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule associated complex (GO:0005875);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: dynein complex (GO:0030286);; Cellular Component: cilium axoneme (GO:0035085);; Biological Process: motile cilium assembly (GO:0044458);; Biological Process: root hair cell development (GO:0080147);; "	--	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=1 SV=1	Dynein light chain LC6, flagellar outer arm OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: dynein light chain LC6, flagellar outer arm-like [Setaria italica]
comp223126_c0	2.19E-07	4.849635369	up	--	--	"Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	--	Putative uncharacterized protein GN=MTR_5g032980 OS=Medicago truncatula (Barrel medic) PE=4 SV=1	hypothetical protein MTR_5g032980 [Medicago truncatula] 
comp227667_c1	0.009181543	-1.7895445	down	[C]	Energy production and conversion 	"Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor (GO:0016632);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor (GO:0016899);; Biological Process: cellular metabolic process (GO:0044237);; "	--	L-galactono-1,4-lactone dehydrogenase, mitochondrial (Precursor) OS=Brassica oleracea (Wild cabbage) PE=1 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: L-gulonolactone oxidase-like [Setaria italica]
comp233398_c0	5.88E-08	-3.091829191	down	--	--	"Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: glycerol-3-phosphate O-acyltransferase activity (GO:0004366);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: RNA processing (GO:0006396);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: pattern specification process (GO:0007389);; Biological Process: metabolic process (GO:0008152);; Biological Process: regulation of cell size (GO:0008361);; Molecular Function: organic anion transmembrane transporter activity (GO:0008514);; Cellular Component: chloroplast (GO:0009507);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: cutin biosynthetic process (GO:0010143);; Biological Process: suberin biosynthetic process (GO:0010345);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: phosphatase activity (GO:0016791);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: cuticle development (GO:0042335);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: pollen sperm cell differentiation (GO:0048235);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall organization (GO:0071555);; Biological Process: response to karrikin (GO:0080167);; Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity (GO:0090447);; "	--	Glycerol-3-phosphate 2-O-acyltransferase 6 GN=GPAT6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035307m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Setaria italica]
comp211969_c0	0.000189836	2.254047805	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: enzyme inhibitor activity (GO:0004857);; Molecular Function: binding (GO:0005488);; Biological Process: RNA processing (GO:0006396);; Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: pectinesterase activity (GO:0030599);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Biological Process: response to karrikin (GO:0080167);; "	--	Cell wall / vacuolar inhibitor of fructosidase 2 (Precursor) GN=MUB3.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si015533m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2-like [Setaria italica]
comp199810_c1	0.001622941	3.108721722	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protease binding (GO:0002020);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: protein folding (GO:0006457);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to virus (GO:0009615);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: heat acclimation (GO:0010286);; Cellular Component: nuclear matrix (GO:0016363);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: cytosolic ribosome (GO:0022626);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: mycelium development (GO:0043581);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: response to karrikin (GO:0080167);; "	K03283|4e-41|ppp:PHYPADRAFT_58148|hypothetical protein	Heat shock 70 kDa protein GN=HSP70 OS=Achlya klebsiana PE=2 SV=1	Uncharacterized protein GN=fgenesh1_pm.C_scaffold_1313000001 OS=Phytophthora ramorum (Sudden oak death agent) PE=3 SV=1	heat shock protein 70 [Phytophthora nicotianae]
comp491643_c0	0.000354788	3.961535104	up	--	--	--	--	--	--	--
comp194938_c0	0.001820331	1.918099652	up	--	--	"Molecular Function: calcium ion binding (GO:0005509);; "	--	Calmodulin-like protein 5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si018826m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable calcium-binding protein CML17-like [Setaria italica]
comp205263_c0	0.000125523	-3.5162266	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: response to organic substance (GO:0010033);; Biological Process: cellular component organization (GO:0016043);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: ion binding (GO:0043167);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: system development (GO:0048731);; Biological Process: response to other organism (GO:0051707);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Wall-associated receptor kinase 1 (Precursor) GN=F16F4.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=OB10G10450 OS=Oryza brachyantha PE=3 SV=1	hypothetical protein OsI_24264 [Oryza sativa Indica Group]
comp219782_c0	1.79E-14	6.28302055	up	--	--	"Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100383840 [Zea mays] 
comp130987_c0	2.34E-08	3.282557739	up	[M]	Cell wall/membrane/envelope biogenesis 	"Cellular Component: extracellular region (GO:0005576);; Biological Process: cytokinin metabolic process (GO:0009690);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: cytokinin dehydrogenase activity (GO:0019139);; Biological Process: electron transport chain (GO:0022900);; "	K00279|1e-29|zma:100526752|CKX4b	Cytokinin dehydrogenase 5 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_083779 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_083779 [Zea mays]
comp228110_c1	2.36E-05	-2.962488613	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Putative uncharacterized protein Sb03g030580 GN=Sb03g030580 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g030580 [Sorghum bicolor] 
comp216190_c0	0.001952076	3.323086301	up	[P]	Inorganic ion transport and metabolism 	"Molecular Function: binding (GO:0005488);; Biological Process: response to stress (GO:0006950);; Molecular Function: cyanate hydratase activity (GO:0008824);; Biological Process: cyanate metabolic process (GO:0009439);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Cellular Component: cell periphery (GO:0071944);; "	K01725|1e-21|rcu:RCOM_0038590|Cyanate hydratase, putative (EC:4.2.1.104)	Cyanate hydratase 1 GN=CYN1 OS=Populus trichocarpa (Western balsam poplar) PE=3 SV=1	Cyanate hydratase GN=CYN OS=Micromonas sp. (strain RCC299 / NOUM17) PE=3 SV=1	"RecName: Full=Cyanate hydratase; Short=Cyanase; AltName: Full=Cyanate hydrolase; AltName: Full=Cyanate lyase "
comp133236_c0	8.27E-06	2.508476755	up	[R]	General function prediction only 	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: de-etiolation (GO:0009704);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: secondary shoot formation (GO:0010223);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: response to karrikin (GO:0080167);; "	--	Probable strigolactone esterase D14 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative uncharacterized protein Sb03g026840 GN=Sb03g026840 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: probable esterase KAI2-like [Setaria italica]
comp225877_c1	0.000401061	2.520791961	up	--	--	--	--	--	--	--
comp233187_c1	0.001064871	1.979790809	up	[R]	General function prediction only 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: Golgi-associated vesicle (GO:0005798);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: response to heat (GO:0009408);; Cellular Component: cell plate (GO:0009504);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: xylem development (GO:0010089);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: protein transport (GO:0015031);; Cellular Component: early endosome membrane (GO:0031901);; Cellular Component: trans-Golgi network membrane (GO:0032588);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: inter-Golgi cisterna vesicle-mediated transport (GO:0048219);; "	--	Ras-related protein RABA5b GN=RABA5B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g026600 [Sorghum bicolor] 
comp227262_c0	0.002427655	2.070557309	up	--	--	"Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);; Biological Process: protein N-linked glycosylation (GO:0006487);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	K00737|0.0|zma:100282765|N-acetylglucosaminyltransferase III	--	N-acetylglucosaminyltransferase III GN=ZEAMMB73_675059 OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Setaria italica]
comp132579_c0	1.08E-05	-3.210930469	down	--	--	--	--	--	Lipopolysaccharide-modifying protein GN=ZEAMMB73_670960 OS=Zea mays (Maize) PE=4 SV=1	lipopolysaccharide-modifying protein [Zea mays]
comp235777_c0	0.002055742	2.007682877	up	[EH]	--	"Biological Process: sulfate assimilation (GO:0000103);; Biological Process: tryptophan biosynthetic process (GO:0000162);; Biological Process: MAPK cascade (GO:0000165);; Molecular Function: anthranilate synthase activity (GO:0004049);; Molecular Function: sulfate adenylyltransferase (ATP) activity (GO:0004781);; Cellular Component: cytosol (GO:0005829);; Cellular Component: anthranilate synthase complex (GO:0005950);; Biological Process: threonine catabolic process (GO:0006567);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to wounding (GO:0009611);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cellular response to sulfate starvation (GO:0009970);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: membrane (GO:0016020);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: indeterminate inflorescence morphogenesis (GO:0048283);; Biological Process: defense response to fungus (GO:0050832);; "	K01657|0.0|osa:4332341|Os03g0264400	Anthranilate synthase component I-2, chloroplastic (Precursor) GN=ASA2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Os03g0264400 protein GN=OsASA2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os03g0264400 [Oryza sativa Japonica Group] 
comp226185_c1	0.000138837	2.232494839	up	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to organic substance (GO:0071310);; "	K13464|4e-46|zma:100286212|ZIM motif family protein	Protein TIFY 3A GN=T18D12.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: protein TIFY 3A-like [Setaria italica]
comp163246_c1	9.34E-07	-2.923712438	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: lignan biosynthetic process (GO:0009807);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: small molecule biosynthetic process (GO:0044283);; "	--	Dirigent protein 21 (Precursor) GN=DIR21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Dirigent-like protein pDIR9 OS=Zea mays (Maize) PE=2 SV=1	dirigent-like protein pDIR9 precursor [Zea mays] 
comp226077_c0	1.80E-05	2.499663553	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: binding (GO:0005488);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: response to stress (GO:0006950);; Biological Process: organelle organization (GO:0006996);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: stomatal complex development (GO:0010374);; Biological Process: positive regulation of cellular process (GO:0048522);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: localization (GO:0051179);; Biological Process: cellular response to chemical stimulus (GO:0070887);; "	--	Transcription factor bHLH35 GN=MUL3.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si010413m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor bHLH35-like isoform X2 [Setaria italica]
comp188696_c1	0.000152772	-3.771711761	down	--	--	"Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Putative uncharacterized protein Sb03g004080 GN=Sb03g004080 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g004080 [Sorghum bicolor] 
comp217278_c1	0.005750304	1.935241944	up	[RTKL]	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: chromosome, centromeric region (GO:0000775);; Molecular Function: phosphorylase kinase activity (GO:0004689);; Molecular Function: calcium-dependent protein kinase C activity (GO:0004698);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: phosphorylase kinase complex (GO:0005964);; Biological Process: glycogen biosynthetic process (GO:0005978);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: protein phosphatase binding (GO:0019903);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: protein autophosphorylation (GO:0046777);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of pollen tube growth (GO:0080092);; "	K08794|7e-35|vcn:VOLCADRAFT_79621|hypothetical protein	Calcium-dependent protein kinase 15 GN=CPK15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	"N/a GN=CDPK;5 OS=Ectocarpus siliculosus (Brown alga) PE=4 SV=1"	n/a [Ectocarpus siliculosus]
comp189682_c0	1.55E-08	3.006587049	up	--	--	--	K09422|3e-40|sbi:SORBI_09g002675|hypothetical protein	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si022474m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription repressor MYB5-like [Setaria italica]
comp221128_c0	0.000205532	-2.325749427	down	[C]	Energy production and conversion 	"Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: metabolic process (GO:0008152);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: polar nucleus fusion (GO:0010197);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: apoplast (GO:0048046);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Tetrahydrocannabinolic acid synthase (Precursor) OS=Cannabis sativa (Hemp) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp215186_c0	0.000634682	-2.140583939	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to UV-B (GO:0010224);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: flavonoid 3'-monooxygenase activity (GO:0016711);; Molecular Function: heme binding (GO:0020037);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: cellular lipid metabolic process (GO:0044255);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; "	K13083|0.0|sbi:SORBI_01g034460|hypothetical protein	"Flavonoid 3',5'-hydroxylase 1 GN=CYP75A1 OS=Petunia hybrida (Petunia) PE=2 SV=1"	Uncharacterized protein GN=Si035183m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	"PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Setaria italica]"
comp233750_c0	0.009174789	1.713267503	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell differentiation (GO:0030154);; Molecular Function: bHLH transcription factor binding (GO:0043425);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: organ development (GO:0048513);; "	--	Putative transcription factor bHLH041 GN=MHM17.7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	Uncharacterized protein GN=Si007981m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative transcription factor bHLH041-like [Setaria italica]
comp234270_c0	0.000276864	3.601290403	up	--	--	--	--	--	Unnamed protein product GN=Bathy06g03000 OS=Bathycoccus prasinos PE=4 SV=1	unnamed protein product [Bathycoccus prasinos]
comp206401_c0	6.73E-07	-3.276129176	down	--	--	--	--	F-box only protein 13 GN=FBX13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	F-box protein GN=B9009 OS=Zea mays (Maize) PE=4 SV=1	F-box protein [Zea mays]
comp194890_c0	0.00113483	3.160235434	up	--	--	"Molecular Function: binding (GO:0005488);; "	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101764768 [Setaria italica]
comp213643_c0	7.59E-06	2.46901029	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: cold acclimation (GO:0009631);; Biological Process: photosynthetic acclimation (GO:0009643);; Biological Process: jasmonic acid biosynthetic process (GO:0009695);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to UV-B (GO:0010224);; Biological Process: heat acclimation (GO:0010286);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: negative regulation of growth (GO:0045926);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: reproductive structure development (GO:0048608);; "	--	Zinc finger protein ZAT12 GN=MMN10.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si023353m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger protein ZAT12-like [Setaria italica]
comp224325_c0	2.15E-07	-2.974768983	down	--	--	"Cellular Component: plastid (GO:0009536);; Biological Process: cellular process (GO:0009987);; Biological Process: aromatic compound biosynthetic process (GO:0019438);; Cellular Component: intracellular part (GO:0044424);; "	--	NAC domain-containing protein 43 GN=F19D11.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb07g001550 GN=Sb07g001550 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g001550 [Sorghum bicolor] 
comp230366_c0	1.06E-06	2.735867863	up	[P]	Inorganic ion transport and metabolism 	"Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: nitrate transmembrane transporter activity (GO:0015112);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: lateral root development (GO:0048527);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: cellular response to nitrate (GO:0071249);; Biological Process: organic substance metabolic process (GO:0071704);; Biological Process: response to karrikin (GO:0080167);; "	--	High-affinity nitrate transporter 2.1 GN=At1g08090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016891m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: high-affinity nitrate transporter 2.1-like [Setaria italica]
comp207050_c0	0.000417318	2.083136976	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: 6-phosphofructokinase complex (GO:0005945);; Biological Process: fructose 6-phosphate metabolic process (GO:0006002);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: cytoskeleton organization (GO:0007010);; Cellular Component: chloroplast (GO:0009507);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Biological Process: phosphorylation (GO:0016310);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: carbohydrate derivative metabolic process (GO:1901135);; "	K00850|0.0|sbi:SORBI_09g006030|hypothetical protein	6-phosphofructokinase 3 GN=PFK3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g006030 GN=Sb09g006030 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: 6-phosphofructokinase 3-like [Setaria italica]
comp212472_c0	0.001021152	-2.118788561	down	--	--	"Biological Process: amino acid transmembrane transport (GO:0003333);; Cellular Component: mitochondrial inner membrane presequence translocase complex (GO:0005744);; Cellular Component: vacuole (GO:0005773);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: protein transport (GO:0015031);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);; Cellular Component: integral to chloroplast outer membrane (GO:0031359);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: protein import into chloroplast stroma (GO:0045037);; "	--	Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si037737m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: outer envelope pore protein 16-2, chloroplastic-like [Setaria italica]
comp234227_c1	1.32E-09	3.1981456	up	--	--	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315);; Molecular Function: nucleotide-sugar transmembrane transporter activity (GO:0005338);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: transport (GO:0006810);; Biological Process: purine nucleobase transport (GO:0006863);; Biological Process: organelle organization (GO:0006996);; Biological Process: vacuole organization (GO:0007033);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: embryo sac development (GO:0009553);; Biological Process: response to nematode (GO:0009624);; Biological Process: photosynthetic acclimation (GO:0009643);; Molecular Function: triose-phosphate:phosphate antiporter activity (GO:0009670);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: embryo development (GO:0009790);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: pollen maturation (GO:0010152);; Molecular Function: phosphoglycerate transmembrane transporter activity (GO:0015120);; Molecular Function: phosphoenolpyruvate:phosphate antiporter activity (GO:0015121);; Molecular Function: glucose-6-phosphate transmembrane transporter activity (GO:0015152);; Biological Process: phosphoglycerate transport (GO:0015713);; Biological Process: phosphoenolpyruvate transport (GO:0015714);; Biological Process: glucose-6-phosphate transport (GO:0015760);; Biological Process: nucleotide-sugar transport (GO:0015780);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: lipid particle organization (GO:0034389);; Biological Process: triose phosphate transmembrane transport (GO:0035436);; Cellular Component: plastid membrane (GO:0042170);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: gametophyte development (GO:0048229);; Biological Process: anatomical structure development (GO:0048856);; "	--	Glucose-6-phosphate/phosphate translocator 2, chloroplastic (Precursor) GN=GPT2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Glucose-6-phosphate/phosphate translocator 2 OS=Zea mays (Maize) PE=2 SV=1	glucose-6-phosphate/phosphate translocator 2 [Zea mays] 
comp227747_c0	0.001096977	-2.035932096	down	--	--	--	--	Protein FAF-like, chloroplastic (Precursor) GN=At5g22090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si035836m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein FAF-like, chloroplastic-like [Setaria italica]
comp124845_c0	0.000401616	-3.356814247	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Blue copper protein (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1	Putative uncharacterized protein Sb02g003830 GN=Sb02g003830 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: blue copper protein-like [Setaria italica]
comp214537_c0	5.85E-05	2.361623905	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to stimulus (GO:0050896);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si006564m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101763384 [Setaria italica]
comp214880_c0	0.000538063	2.153062855	up	--	--	--	--	--	Uncharacterized protein GN=Si007650m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755681 [Setaria italica]
comp279602_c0	2.47E-09	4.390606191	up	[J]	Translation, ribosomal structure and biogenesis 	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_70714 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70714, partial [Aureococcus anophagefferens]
comp227945_c1	0.003000039	-2.146038786	down	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: defense response (GO:0006952);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: organelle organization (GO:0006996);; Biological Process: pollen development (GO:0009555);; Biological Process: flower development (GO:0009908);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: gene expression (GO:0010467);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: transferase activity (GO:0016740);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular lipid metabolic process (GO:0044255);; Biological Process: small molecule metabolic process (GO:0044281);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: organ development (GO:0048513);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: phyllome development (GO:0048827);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Anthocyanidin reductase GN=T13M11.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si011762m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: anthocyanidin reductase-like [Setaria italica]
comp208519_c0	0.004503229	1.803696018	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si033666m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772764 [Setaria italica]
comp225737_c1	0.002108698	-2.082175897	down	--	--	--	--	--	--	--
comp196452_c1	6.06E-05	-2.366999431	down	--	--	"Cellular Component: cell wall (GO:0005618);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to osmotic stress (GO:0006970);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: tissue development (GO:0009888);; Biological Process: positive regulation of abscisic acid biosynthetic process (GO:0010116);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: system development (GO:0048731);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|0.0|zma:542139|cesa11, ZmCESA11	Cellulose synthase A catalytic subunit 4 [UDP-forming] GN=P0046E05.4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Cellulose synthase catalytic subunit 11 GN=CesA11 OS=Zea mays (Maize) PE=2 SV=1	TPA: putative cellulose synthase family protein [Zea mays] 
comp124906_c0	0.000230798	4.021633515	up	--	--	--	--	--	--	--
comp233854_c0	0.000105123	3.477002582	up	--	--	--	--	--	--	--
comp218707_c0	3.44E-05	-2.436954782	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to virus (GO:0009615);; Biological Process: glutamine secretion (GO:0010585);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: virus-host interaction (GO:0019048);; Biological Process: regulation of amino acid export (GO:0080143);; "	--	Protein GLUTAMINE DUMPER 3 GN=MRI1.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb07g021970 GN=Sb07g021970 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: protein GLUTAMINE DUMPER 3-like [Setaria italica]
comp163865_c0	0.002967217	-2.085046729	down	--	--	"Biological Process: defense response to insect (GO:0002213);; Molecular Function: chitinase activity (GO:0004568);; Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: chitin catabolic process (GO:0006032);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	Sulfated surface glycoprotein 185 (Precursor) OS=Volvox carteri (Green alga) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_464429 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_464429 [Zea mays]
comp228165_c0	0.004259885	1.918277017	up	[P]	Inorganic ion transport and metabolism 	"Cellular Component: nucleus (GO:0005634);; Cellular Component: late endosome (GO:0005770);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: cation transport (GO:0006812);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to manganese ion (GO:0010042);; Biological Process: response to UV-B (GO:0010224);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Molecular Function: manganese:hydrogen antiporter activity (GO:0010486);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular manganese ion homeostasis (GO:0030026);; Biological Process: response to copper ion (GO:0046688);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: manganese ion transmembrane transport (GO:0071421);; "	--	Metal tolerance protein 5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb03g039220 GN=Sb03g039220 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g039220 [Sorghum bicolor] 
comp239780_c0	0.009550604	1.722448837	up	--	--	--	--	Basic blue protein OS=Cucumis sativus (Cucumber) PE=1 SV=1	--	--
comp220767_c2	0.002637491	2.047302026	up	[RTKL]	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: carbohydrate binding (GO:0030246);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: recognition of pollen (GO:0048544);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: pollen tube development (GO:0048868);; Biological Process: response to stimulus (GO:0050896);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	--	Putative receptor protein kinase ZmPK1 (Precursor) GN=PK1 OS=Zea mays (Maize) PE=2 SV=2	Serine/threonine-protein kinase GN=Sb03g004850 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g004850 [Sorghum bicolor] 
comp231622_c0	0.002000437	2.051789581	up	--	--	"Biological Process: G2 phase of mitotic cell cycle (GO:0000085);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein complex assembly (GO:0006461);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Biological Process: multicellular organismal development (GO:0007275);; Cellular Component: signalosome (GO:0008180);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to absence of light (GO:0009646);; Biological Process: response to salt stress (GO:0009651);; Biological Process: seed germination (GO:0009845);; Biological Process: embryonic pattern specification (GO:0009880);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: primary shoot apical meristem specification (GO:0010072);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cullin deneddylation (GO:0010388);; Biological Process: regulation of cell cycle process (GO:0010564);; Biological Process: positive regulation of organelle organization (GO:0010638);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: histone methylation (GO:0016571);; Biological Process: protein deubiquitination (GO:0016579);; Biological Process: lipid storage (GO:0019915);; Biological Process: regulation of chromosome organization (GO:0033044);; Biological Process: regulation of cell differentiation (GO:0045595);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cotyledon development (GO:0048825);; Biological Process: response to freezing (GO:0050826);; Biological Process: cell division (GO:0051301);; "	K12175|0.0|sbi:SORBI_01g049510|hypothetical protein	COP9 signalosome complex subunit 1 GN=T20K12.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si035730m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: COP9 signalosome complex subunit 1-like [Setaria italica]
comp229578_c0	0.000129137	-2.759766434	down	[IQR]	--	"Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: steroid metabolic process (GO:0008202);; Biological Process: response to hormone stimulus (GO:0009725);; Molecular Function: steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0033764);; Biological Process: response to lipid (GO:0033993);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: response to alcohol (GO:0097305);; "	--	11-beta-hydroxysteroid dehydrogenase-like 2 GN=HSD2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Predicted protein GN=POPTRDRAFT_776316 OS=Populus trichocarpa (Western balsam poplar) PE=3 SV=1	predicted protein [Populus trichocarpa] 
comp213242_c0	2.41E-05	-2.607091463	down	--	--	"Biological Process: amino acid transmembrane transport (GO:0003333);; Molecular Function: amine transmembrane transporter activity (GO:0005275);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: nucleotide transport (GO:0006862);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: amino acid transmembrane transporter activity (GO:0015171);; Molecular Function: acidic amino acid transmembrane transporter activity (GO:0015172);; Molecular Function: neutral amino acid transmembrane transporter activity (GO:0015175);; Biological Process: ammonium transport (GO:0015696);; Biological Process: basic amino acid transport (GO:0015802);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Biological Process: regulation of ion transport (GO:0043269);; Biological Process: response to karrikin (GO:0080167);; "	--	Lysine histidine transporter-like 6 GN=At1g25530 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si010148m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_473474 [Zea mays]
comp219018_c0	0.003339525	-1.90773496	down	--	--	--	--	--	Uncharacterized protein GN=TRIUR3_14424 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	hypothetical protein TRIUR3_14424 [Triticum urartu]
comp308885_c0	1.13E-06	4.673517234	up	[RTKL]	--	"Biological Process: cellular protein modification process (GO:0006464);; Biological Process: post-embryonic development (GO:0009791);; Molecular Function: kinase activity (GO:0016301);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to stimulus (GO:0050896);; Biological Process: cell wall organization (GO:0071555);; Cellular Component: cell periphery (GO:0071944);; "	--	Extensin (Precursor) GN=HRGP OS=Zea mays (Maize) PE=2 SV=1	Putative uncharacterized protein (Fragment) GN=VOLCADRAFT_63308 OS=Volvox carteri (Green alga) PE=4 SV=1	hypothetical protein VOLCADRAFT_63308 [Volvox carteri f. nagariensis] 
comp223610_c0	0.003162548	-1.91279607	down	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: spindle (GO:0005819);; Cellular Component: microtubule (GO:0005874);; Biological Process: DNA replication (GO:0006260);; Biological Process: protein complex assembly (GO:0006461);; Biological Process: mitosis (GO:0007067);; Cellular Component: plastid (GO:0009536);; Biological Process: gene silencing (GO:0016458);; Biological Process: histone modification (GO:0016570);; Biological Process: cell cycle process (GO:0022402);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: macromolecule methylation (GO:0043414);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Protein TPX2 GN=TPX2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si031150m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein TPX2-like [Setaria italica]
comp234788_c1	3.88E-05	2.341545633	up	[LKJ]	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: helicase activity (GO:0004386);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuole (GO:0005773);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: translation (GO:0006412);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Cellular Component: plastid (GO:0009536);; Biological Process: RNA metabolic process (GO:0016070);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Molecular Function: ATPase activity (GO:0016887);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	K11594|1e-166|cre:CHLREDRAFT_111269|hypothetical protein	DEAD-box ATP-dependent RNA helicase 52B GN=OSJNBa0081K20.14 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	DEAD box helicase GN=Esi_0186_0022 OS=Ectocarpus siliculosus (Brown alga) PE=3 SV=1	RecName: Full=ATP-dependent RNA helicase ded-1 
comp156816_c0	0.000106117	-2.314435273	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cell cortex (GO:0005938);; Biological Process: Golgi to vacuole transport (GO:0006896);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: tissue development (GO:0009888);; Biological Process: root morphogenesis (GO:0010015);; Cellular Component: membrane (GO:0016020);; Biological Process: amino acid export (GO:0032973);; Molecular Function: L-amino acid efflux transmembrane transporter activity (GO:0034639);; Biological Process: amino acid import (GO:0043090);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: regulation of intracellular pH (GO:0051453);; Biological Process: amino acid homeostasis (GO:0080144);; Biological Process: lytic vacuole organization (GO:0080171);; Biological Process: positive regulation of auxin metabolic process (GO:0090355);; Biological Process: positive regulation of tryptophan metabolic process (GO:0090358);; "	--	WAT1-related protein At2g39510 GN=At2g39510 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si035928m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: WAT1-related protein At2g39510-like isoform X2 [Setaria italica]
comp192422_c0	0.008205062	1.915420437	up	--	--	"Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: water transport (GO:0006833);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: acidic amino acid transmembrane transporter activity (GO:0015172);; Molecular Function: basic amino acid transmembrane transporter activity (GO:0015174);; Molecular Function: neutral amino acid transmembrane transporter activity (GO:0015175);; Molecular Function: primary active transmembrane transporter activity (GO:0015399);; Biological Process: neutral amino acid transport (GO:0015804);; Biological Process: arginine transport (GO:0015809);; Biological Process: aspartate transport (GO:0015810);; Biological Process: tryptophan transport (GO:0015827);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: amino acid import (GO:0043090);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	Amino acid permease 6 GN=AAP6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb10g021980 GN=Sb10g021980 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g021980 [Sorghum bicolor] 
comp220596_c0	0.003911968	-2.594349082	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=OB06G34820 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein [Oryza sativa Japonica Group]
comp218956_c2	5.90E-08	2.924659366	up	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; "	--	U-box domain-containing protein 21 GN=PUB21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=OB03G20200 OS=Oryza brachyantha PE=4 SV=1	hypothetical protein OsJ_10087 [Oryza sativa Japonica Group]
comp206093_c0	0.004271602	-3.269159058	down	--	--	"Biological Process: rRNA processing (GO:0006364);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Biological Process: plastid organization (GO:0009657);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photosystem II assembly (GO:0010207);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: photosynthesis (GO:0015979);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: cellular cation homeostasis (GO:0030003);; Cellular Component: cyanelle thylakoid membrane (GO:0033115);; Biological Process: divalent metal ion transport (GO:0070838);; "	K02693|2e-81|zma:100283327|photosystem I reaction center subunit IV A	Photosystem I reaction center subunit IV, chloroplastic (Precursor) GN=PSAE OS=Hordeum vulgare (Barley) PE=1 SV=2	Uncharacterized protein GN=Si031265m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: photosystem I reaction center subunit IV A [Zea mays]
comp196695_c0	0.002599882	2.040475213	up	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; "	--	--	Putative AP2/EREBP transcription factor superfamily protein GN=ZEAMMB73_117148 OS=Zea mays (Maize) PE=4 SV=1	putative AP2/EREBP transcription factor superfamily protein [Zea mays]
comp234485_c1	1.12E-13	-4.184924312	down	--	--	--	--	--	Dehydration responsive protein (Fragment) GN=drp OS=Corchorus olitorius PE=2 SV=1	dehydration responsive protein [Corchorus olitorius]
comp217046_c0	0.00010172	2.229910214	up	--	--	--	--	--	Putative uncharacterized protein Sb01g032680 GN=Sb01g032680 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g032680 [Sorghum bicolor] 
comp216704_c1	0.004271602	-3.269159058	down	--	--	"Cellular Component: chloroplast (GO:0009507);; "	--	BTB/POZ domain-containing protein At3g50780 GN=At3g50780 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb02g001910 GN=Sb02g001910 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g001910 [Sorghum bicolor] 
comp222016_c0	5.90E-08	2.893243751	up	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cell periphery (GO:0071944);; "	--	Proline-rich receptor-like protein kinase PERK10 GN=PERK10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb06g000810 GN=Sb06g000810 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g000810 [Sorghum bicolor] 
comp171616_c0	1.71E-06	-2.759411458	down	--	--	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: hormone biosynthetic process (GO:0042446);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 734A6 GN=OSJNBb0008D07.26 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb10g006110 GN=Sb10g006110 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_10g006110 [Sorghum bicolor] 
comp206916_c0	8.52E-09	3.849449692	up	--	--	--	--	--	Expressed protein (Fragment) GN=AURANDRAFT_71483 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	expressed protein, partial [Aureococcus anophagefferens]
comp221615_c0	0.006736293	-2.21917294	down	--	--	--	--	--	Uncharacterized protein GN=Si010799m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: NAC domain-containing protein 21/22-like [Setaria italica]
comp205942_c2	0.000584188	2.764747746	up	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	--	Uncharacterized protein GN=Si002840m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101785677 [Setaria italica]
comp181494_c0	2.04E-05	4.337556614	up	[R]	General function prediction only 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein binding (GO:0005515);; Biological Process: generation of precursor metabolites and energy (GO:0006091);; Biological Process: RNA processing (GO:0006396);; Biological Process: transport (GO:0006810);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: organelle organization (GO:0006996);; Molecular Function: poly(U) RNA binding (GO:0008266);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: flower development (GO:0009908);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to metal ion (GO:0010038);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Cellular Component: stromule (GO:0010319);; Molecular Function: transferase activity (GO:0016740);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Biological Process: nucleobase-containing compound biosynthetic process (GO:0034654);; Biological Process: ribosome biogenesis (GO:0042254);; Biological Process: macromolecule methylation (GO:0043414);; Biological Process: cellular lipid metabolic process (GO:0044255);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: innate immune response (GO:0045087);; Biological Process: organ development (GO:0048513);; Biological Process: phyllome development (GO:0048827);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to other organism (GO:0051707);; Biological Process: regulation of macromolecule metabolic process (GO:0060255);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	K12881|9e-47|osa:4332426|Os03g0278300	Glycine-rich RNA-binding protein 2, mitochondrial (Precursor) GN=At4g13850 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	RNA recognition motif-containing protein OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	RNA recognition motif-containing protein [Arabidopsis thaliana] 
comp208064_c1	0.009807574	1.704989334	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Biological Process: terpenoid metabolic process (GO:0006721);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: hormone metabolic process (GO:0042445);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: response to stimulus (GO:0050896);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 714C2 GN=OsJ_35025 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb04g037870 GN=Sb04g037870 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_04g037870 [Sorghum bicolor] 
comp237021_c0	3.30E-05	2.33072946	up	--	--	--	--	--	--	PREDICTED: uncharacterized protein LOC101753548 [Setaria italica]
comp234321_c1	3.33E-16	4.545374988	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: cold acclimation (GO:0009631);; Biological Process: response to salt stress (GO:0009651);; Biological Process: regulation of gibberellin biosynthetic process (GO:0010371);; Biological Process: cell growth (GO:0016049);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of timing of transition from vegetative to reproductive phase (GO:0048510);; Biological Process: response to freezing (GO:0050826);; "	--	Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si018262m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: dehydration-responsive element-binding protein 1G-like [Setaria italica]
comp157372_c0	4.72E-08	5.006573898	up	--	--	--	--	--	--	--
comp217629_c0	5.93E-07	-4.956955488	down	--	--	--	--	--	--	--
comp215688_c0	1.62E-11	3.818884345	up	--	--	"Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: response to stimulus (GO:0050896);; Cellular Component: cell periphery (GO:0071944);; "	--	Leucine-rich repeat extensin-like protein 5 (Precursor) GN=LRX5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Similar to hedgehog protein GN=CYME_CMG221C OS=Cyanidioschyzon merolae strain 10D PE=4 SV=1	similar to hedgehog protein [Cyanidioschyzon merolae strain 10D]
comp218207_c1	3.06E-08	3.245251987	up	--	--	--	--	--	--	--
comp211549_c0	0.000631645	-2.598964	down	--	--	--	--	--	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	Os12g0571300 [Oryza sativa Japonica Group] 
comp226286_c0	0.001550972	-2.313792483	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: cellular process (GO:0009987);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: cell part (GO:0044464);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si016735m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_173733 [Zea mays]
comp202964_c0	0.001728766	2.307085912	up	--	--	--	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101756631 [Setaria italica]
comp233240_c0	0.005197287	-1.923959689	down	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: pollen development (GO:0009555);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: exine (GO:0043668);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Protein RAFTIN 1A (Precursor) GN=RAFTIN1A OS=Triticum aestivum (Wheat) PE=1 SV=1	Uncharacterized protein GN=Si022703m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: BURP domain-containing protein 13-like [Setaria italica]
comp225067_c0	5.28E-05	-2.383732414	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: xylosyltransferase activity (GO:0042285);; Biological Process: system development (GO:0048731);; "	--	Probable glucuronosyltransferase Os05g0123100 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=BRADI2G37970 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	Os05g0123100 [Oryza sativa Japonica Group] 
comp227634_c1	0.007768452	1.757112311	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: phosphoric diester hydrolase activity (GO:0008081);; Cellular Component: plastid (GO:0009536);; Biological Process: pollen development (GO:0009555);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to salt stress (GO:0009651);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: amino acid import (GO:0043090);; Biological Process: post-translational protein modification (GO:0043687);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to osmotic stress (GO:0071470);; "	--	Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_303486 OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp238629_c0	1.17E-12	3.790503667	up	--	--	"Cellular Component: plastid (GO:0009536);; "	--	Formin-like protein 16 (Precursor) GN=OsJ_008039 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si007126m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769881 [Setaria italica]
comp208710_c0	3.60E-07	-3.095777613	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026061m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g022870 [Sorghum bicolor] 
comp213818_c0	0.005375526	1.837590928	up	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	Uncharacterized mitochondrial protein AtMg00310 GN=AtMg00310 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	Retrotransposon protein, putative, unclassified GN=LOC_Os12g29700 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
comp228600_c1	0.00285833	2.022637596	up	--	--	--	--	--	Uncharacterized protein GN=Si011392m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101766713 [Setaria italica]
comp195318_c0	2.68E-12	3.830867429	up	[MG]	--	"Biological Process: alternative nuclear mRNA splicing, via spliceosome (GO:0000380);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: tRNA modification (GO:0006400);; Biological Process: mRNA export from nucleus (GO:0006406);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo sac development (GO:0009553);; Biological Process: response to salt stress (GO:0009651);; Biological Process: etioplast organization (GO:0009662);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to chitin (GO:0010200);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: histone H3-K36 methylation (GO:0010452);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Biological Process: positive regulation of histone methylation (GO:0031062);; Biological Process: DNA duplex unwinding (GO:0032508);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: negative regulation of circadian rhythm (GO:0042754);; Molecular Function: histone methyltransferase activity (H3-K4 specific) (GO:0042800);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: carotenoid isomerase activity (GO:0046608);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: histone methyltransferase activity (H3-K36 specific) (GO:0046975);; Cellular Component: apoplast (GO:0048046);; Biological Process: seed development (GO:0048316);; Biological Process: leaf development (GO:0048366);; Biological Process: ovule development (GO:0048481);; Biological Process: anther development (GO:0048653);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; Biological Process: 5-carbamoylmethyluridine metabolic process (GO:0080178);; "	--	Cinnamoyl-CoA reductase 1 GN=T24D18.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si017734m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cinnamoyl-CoA reductase 1-like [Setaria italica]
comp234260_c1	7.55E-07	3.508065164	up	--	--	--	--	--	Putative uncharacterized protein Sb02g026525 (Fragment) GN=Sb02g026525 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g026525 [Sorghum bicolor] 
comp226371_c0	9.33E-07	2.670030631	up	--	--	"Molecular Function: protein binding (GO:0005515);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: system development (GO:0048731);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	NAC domain-containing protein 90 GN=NAC090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002586m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: NAC domain-containing protein 90-like [Setaria italica]
comp220127_c0	0.00020753	-2.601029551	down	--	--	"Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: response to stimulus (GO:0050896);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=P0710E05.21 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775005 [Setaria italica]
comp231960_c1	0.004972508	-2.089766382	down	[G]	Carbohydrate transport and metabolism 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: extracellular region (GO:0005576);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: pectate lyase activity (GO:0030570);; Biological Process: cell wall modification involved in multidimensional cell growth (GO:0042547);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: pectin catabolic process (GO:0045490);; Cellular Component: anchored to plasma membrane (GO:0046658);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root hair elongation (GO:0048767);; "	K01728|1e-117|zma:100273705|hypothetical protein LOC100273705	Probable pectate lyase 15 (Precursor) GN=At4g13710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp219969_c0	1.21E-08	4.710670083	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to salt stress (GO:0009651);; "	--	Transcription factor ASG4 GN=F22L4.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative late elongated hypocotyl GN=P0011G08.25 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	PREDICTED: transcription factor ASG4-like [Setaria italica]
comp214155_c0	2.40E-08	3.092020444	up	--	--	"Biological Process: response to hypoxia (GO:0001666);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: response to nitrate (GO:0010167);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: nitrate transport (GO:0015706);; "	--	LOB domain-containing protein 39 GN=F19F18.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si037275m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: LOB domain-containing protein 37-like [Setaria italica]
comp267990_c0	0.000121298	-2.810996336	down	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: binding (GO:0005488);; Biological Process: cellular process (GO:0009987);; Cellular Component: nuclear lumen (GO:0031981);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb04g012650 GN=Sb04g012650 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: protein IQ-DOMAIN 1-like [Setaria italica]
comp161636_c0	1.36E-07	2.90991821	up	--	--	--	--	Sulfated surface glycoprotein 185 (Precursor) OS=Volvox carteri (Green alga) PE=1 SV=1	Predicted protein GN=POPTRDRAFT_553619 OS=Populus trichocarpa (Western balsam poplar) PE=4 SV=1	predicted protein [Populus trichocarpa] 
comp215875_c0	0.000110617	2.215703614	up	--	--	"Biological Process: protein targeting to membrane (GO:0006612);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: hyperosmotic salinity response (GO:0042538);; "	--	Zinc finger AN1 domain-containing stress-associated protein 17 GN=OSJNBa0048A13.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si031222m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger AN1 domain-containing stress-associated protein 17-like [Setaria italica]
comp206421_c1	0.001434559	1.947216816	up	--	--	"Biological Process: response to hypoxia (GO:0001666);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: nucleotide transport (GO:0006862);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cellular membrane fusion (GO:0006944);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: lateral root formation (GO:0010311);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: high affinity secondary active ammonium transmembrane transporter activity (GO:0015398);; Biological Process: basic amino acid transport (GO:0015802);; Biological Process: methylammonium transport (GO:0015843);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: amino acid import (GO:0043090);; Biological Process: regulation of ion transport (GO:0043269);; Biological Process: protein polymerization (GO:0051258);; Biological Process: ammonium transmembrane transport (GO:0072488);; Biological Process: response to karrikin (GO:0080167);; Biological Process: lateral root branching (GO:0080181);; "	--	Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp224680_c1	0.000225528	2.343563218	up	[I]	Lipid transport and metabolism 	"Molecular Function: carboxylesterase activity (GO:0004091);; Molecular Function: binding (GO:0005488);; Biological Process: amino acid transport (GO:0006865);; Biological Process: defense response (GO:0006952);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to organic cyclic compound (GO:0014070);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: intracellular part (GO:0044424);; Biological Process: organ development (GO:0048513);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: reproductive structure development (GO:0048608);; "	--	Probable carboxylesterase 15 GN=CXE15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002225m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_165603 [Zea mays]
comp215633_c0	8.20E-07	2.729259159	up	--	--	"Molecular Function: glycerol-3-phosphate O-acyltransferase activity (GO:0004366);; Molecular Function: heme oxygenase (decyclizing) activity (GO:0004392);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: extracellular region (GO:0005576);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: defense response (GO:0006952);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: drought recovery (GO:0009819);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: lipase activity (GO:0016298);; Biological Process: sexual reproduction (GO:0019953);; Cellular Component: organelle membrane (GO:0031090);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Biological Process: lipid particle organization (GO:0034389);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: shoot development (GO:0048367);; Biological Process: regulation of biological process (GO:0050789);; Molecular Function: linoleic acid epoxygenase activity (GO:0071614);; "	--	Probable peroxygenase 4 GN=F5A18.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative ABA-induced protein OS=Cynodon dactylon (Bermuda grass) PE=2 SV=1	putative ABA-induced protein [Cynodon dactylon]
comp130452_c0	4.04E-05	-2.571330724	down	--	--	"Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	--	Homeobox-leucine zipper protein HOX4 GN=OJ1595_D08.21 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si030822m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: homeobox-leucine zipper protein HOX4-like [Setaria italica]
comp209847_c0	8.37E-08	4.066581111	up	--	--	"Molecular Function: lyase activity (GO:0016829);; "	--	--	Putative uncharacterized protein Sb03g004330 GN=Sb03g004330 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g004330 [Sorghum bicolor] 
comp227936_c1	0.001027398	2.62269841	up	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Molecular Function: alternative oxidase activity (GO:0009916);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: electron transport chain (GO:0022900);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: respiratory chain (GO:0070469);; "	--	Ubiquinol oxidase 3, mitochondrial (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein OS=Guillardia theta CCMP2712 PE=4 SV=1	"RecName: Full=Alternative oxidase, mitochondrial; Short=ALTOX; Flags: Precursor "
comp182608_c0	1.25E-06	2.641017795	up	--	--	--	--	--	Uncharacterized protein GN=Si011440m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772092 [Setaria italica]
comp229195_c0	0.004664484	-1.891845037	down	[P]	Inorganic ion transport and metabolism 	"Biological Process: sulfate assimilation (GO:0000103);; Molecular Function: adenylylsulfate kinase activity (GO:0004020);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: tryptophan catabolic process (GO:0006569);; Cellular Component: chloroplast (GO:0009507);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: regulation of glucosinolate biosynthetic process (GO:0010439);; Biological Process: phosphorylation (GO:0016310);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: male gamete generation (GO:0048232);; Biological Process: hydrogen sulfide biosynthetic process (GO:0070814);; "	K00860|1e-134|sbi:SORBI_05g025240|hypothetical protein	Adenylyl-sulfate kinase, chloroplastic (Precursor) GN=AKN OS=Catharanthus roseus (Madagascar periwinkle) PE=2 SV=1	Adenylyl-sulfate kinase GN=Si026686m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: adenylyl-sulfate kinase, chloroplastic-like [Setaria italica]
comp222636_c0	1.42E-05	2.441913892	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: postreplication repair (GO:0006301);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: water transport (GO:0006833);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: root hair elongation (GO:0048767);; "	--	BAG family molecular chaperone regulator 3 GN=BAG3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g043180 GN=Sb03g043180 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g043180 [Sorghum bicolor] 
comp209207_c0	1.44E-05	-2.670406043	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: adenyl ribonucleotide binding (GO:0032559);; Molecular Function: anion binding (GO:0043168);; "	--	Arabinogalactan protein 1 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si024939m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: skin secretory protein xP2-like [Setaria italica]
comp231702_c0	0.007934587	-1.786840813	down	[D]	Cell cycle control, cell division, chromosome partitioning 	"Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: tissue development (GO:0009888);; Biological Process: cellular component organization (GO:0016043);; Biological Process: root development (GO:0048364);; Biological Process: cell development (GO:0048468);; Biological Process: developmental growth (GO:0048589);; Biological Process: response to stimulus (GO:0050896);; Cellular Component: cell periphery (GO:0071944);; "	--	Pollen-specific leucine-rich repeat extensin-like protein 2 (Precursor) GN=PEX2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si012522m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_918265 [Zea mays]
comp229610_c1	0.006083713	-2.044292438	down	[P]	Inorganic ion transport and metabolism 	"Molecular Function: monovalent cation:hydrogen antiporter activity (GO:0005451);; Cellular Component: late endosome (GO:0005770);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: cation transport (GO:0006812);; Biological Process: sodium ion transport (GO:0006814);; Biological Process: regulation of pH (GO:0006885);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: organ senescence (GO:0010260);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: endomembrane system (GO:0012505);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cellular potassium ion homeostasis (GO:0030007);; Biological Process: water homeostasis (GO:0030104);; Biological Process: ion transmembrane transport (GO:0034220);; Molecular Function: metal ion transmembrane transporter activity (GO:0046873);; Biological Process: pollen tube development (GO:0048868);; Biological Process: transmembrane transport (GO:0055085);; "	--	Cation/H(+) antiporter 20 GN=CHX20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein (Fragment) OS=Oryza glaberrima (African rice) PE=4 SV=1	Os05g0382200 [Oryza sativa Japonica Group] 
comp229767_c0	8.41E-05	2.598011075	up	--	--	--	--	DNA mismatch repair protein MSH6 GN=T10M13.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si009363m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: neurofilament heavy polypeptide-like [Setaria italica]
comp227756_c2	0.001913478	2.13022427	up	--	--	--	K09422|8e-71|sbi:SORBI_07g021420|hypothetical protein	Myb-related protein 306 GN=MYB306 OS=Antirrhinum majus (Garden snapdragon) PE=2 SV=1	Uncharacterized protein GN=Si014183m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb-related protein 306-like [Setaria italica]
comp233069_c1	2.91E-05	2.360711805	up	--	--	"Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: translational initiation (GO:0006413);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; "	--	DEAD-box ATP-dependent RNA helicase 52B GN=OSJNBa0081K20.14 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative glycine-rich protein protein (Fragment) OS=Zea mays (Maize) PE=2 SV=1	RecName: Full=ATP-dependent RNA helicase ded-1 
comp213062_c0	0.001910138	-2.494569496	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: 1-phosphatidylinositol binding (GO:0005545);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: clathrin coat (GO:0030118);; Molecular Function: clathrin binding (GO:0030276);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: clathrin coat assembly (GO:0048268);; "	--	Putative clathrin assembly protein At1g25240 GN=At1g25240 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=Si013845m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative clathrin assembly protein At1g25240-like [Setaria italica]
comp225179_c0	0.001588119	-1.997220411	down	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: endoplasmic reticulum part (GO:0044432);; "	--	Protein MIZU-KUSSEI 1 GN=MIZ1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb10g013960 GN=Sb10g013960 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g013960 [Sorghum bicolor] 
comp209014_c0	0.001555024	2.715923635	up	[O]	Posttranslational modification, protein turnover, chaperones 	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Predicted protein GN=PHYPADRAFT_166504 OS=Physcomitrella patens subsp. patens (Moss) PE=4 SV=1	predicted protein [Physcomitrella patens subsp. patens] 
comp225112_c0	0.000163198	2.503111826	up	--	--	--	--	--	--	--
comp213577_c0	0.000354788	3.961535104	up	[C]	Energy production and conversion 	"Molecular Function: binding (GO:0005488);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: glucose metabolic process (GO:0006006);; Biological Process: generation of precursor metabolites and energy (GO:0006091);; Biological Process: nucleobase-containing compound metabolic process (GO:0006139);; Biological Process: fatty acid metabolic process (GO:0006631);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: defense response (GO:0006952);; Biological Process: lipid biosynthetic process (GO:0008610);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: cellular catabolic process (GO:0044248);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: intracellular organelle part (GO:0044446);; Cellular Component: cell part (GO:0044464);; Biological Process: response to stimulus (GO:0050896);; Biological Process: cofactor metabolic process (GO:0051186);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: regulation of primary metabolic process (GO:0080090);; "	K00016|1e-121|ppp:PHYPADRAFT_146489|hypothetical protein	L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare (Barley) PE=1 SV=1	Predicted protein GN=PHYPADRAFT_146489 OS=Physcomitrella patens subsp. patens (Moss) PE=3 SV=1	predicted protein [Physcomitrella patens subsp. patens] 
comp230139_c0	2.08E-08	2.977859592	up	[GEPR]	--	"Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Biological Process: catabolic process (GO:0009056);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: response to karrikin (GO:0080167);; "	--	Mulatexin (Precursor) OS=Morus alba (White mulberry) PE=1 SV=2	Putative uncharacterized protein Sb06g021760 GN=Sb06g021760 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g021760 [Sorghum bicolor] 
comp221024_c0	0.000670375	2.067509023	up	--	--	--	--	Uncharacterized protein At5g01610 GN=At5g01610 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si037780m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At5g01610-like [Setaria italica]
comp225478_c1	9.92E-05	2.684657047	up	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: defense response (GO:0006952);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; "	--	Cysteine-rich receptor-like protein kinase 6 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si024498m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Setaria italica]
comp230942_c0	6.86E-05	2.272541893	up	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101773049 [Setaria italica]
comp165782_c0	0.000368023	2.088184287	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: diterpenoid metabolic process (GO:0016101);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Molecular Function: 9beta-pimara-7,15-diene oxidase activity (GO:0036209);; Cellular Component: membrane-bounded organelle (GO:0043227);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to jasmonic acid stimulus (GO:0071395);; "	--	Premnaspirodiene oxygenase GN=CYP71D55 OS=Hyoscyamus muticus (Egyptian henbane) PE=1 SV=1	Uncharacterized protein GN=Si019998m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: premnaspirodiene oxygenase-like [Setaria italica]
comp227954_c0	0.009245635	-1.769631286	down	--	--	"Cellular Component: cell part (GO:0044464);; "	--	Leucine-rich repeat extensin-like protein 5 (Precursor) GN=LRX5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb04g027620 GN=Sb04g027620 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g027620 [Sorghum bicolor] 
comp228982_c0	0.0063433	-1.821657733	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: C-22 sterol desaturase activity (GO:0000249);; Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: extracellular region (GO:0005576);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Biological Process: cellular response to water deprivation (GO:0042631);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	K09832|0.0|sbi:SORBI_03g002060|hypothetical protein	Cytochrome P450 710A1 GN=CYP710A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si001098m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 710A1-like [Setaria italica]
comp196959_c0	0.001083892	2.866483509	up	[V]	Defense mechanisms 	"Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: enzyme inhibitor activity (GO:0004857);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: cellular iron ion homeostasis (GO:0006879);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: enzyme activator activity (GO:0008047);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Biological Process: nucleotide metabolic process (GO:0009117);; Biological Process: toxin catabolic process (GO:0009407);; Cellular Component: cell plate (GO:0009504);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: phragmoplast (GO:0009524);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: pollen development (GO:0009555);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: plastid organization (GO:0009657);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: auxin polar transport (GO:0009926);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: vernalization response (GO:0010048);; Molecular Function: chlorophyll catabolite transmembrane transporter activity (GO:0010290);; Cellular Component: stromule (GO:0010319);; Molecular Function: glutathione S-conjugate-exporting ATPase activity (GO:0015431);; Molecular Function: arsenite-transmembrane transporting ATPase activity (GO:0015446);; Biological Process: arsenite transport (GO:0015700);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: positive regulation of programmed cell death (GO:0043068);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: cellular component biogenesis (GO:0044085);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: response to arsenic-containing substance (GO:0046685);; Cellular Component: apoplast (GO:0048046);; Biological Process: carpel development (GO:0048440);; Biological Process: transmembrane transport (GO:0055085);; Molecular Function: phytochelatin transmembrane transporter activity (GO:0071992);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	ABC transporter C family member 8 (Precursor) GN=MXL8.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein GN=PGSC0003DMG401004392 OS=Solanum tuberosum (Potato) PE=4 SV=1	ABC transporter [Alternaria brassicicola]
comp214158_c0	0.005936507	-2.008196025	down	--	--	"Molecular Function: protein binding (GO:0005515);; Biological Process: tryptophan metabolic process (GO:0006568);; Biological Process: defense response (GO:0006952);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: indole-containing compound biosynthetic process (GO:0042435);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: cellular response to stimulus (GO:0051716);; Biological Process: regulation of biological quality (GO:0065008);; "	--	Scarecrow-like protein 31 GN=SCL31 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Putative uncharacterized protein Sb05g027800 GN=Sb05g027800 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g027800 [Sorghum bicolor] 
comp199616_c0	0.000471423	-2.595265724	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plastid (GO:0009536);; Biological Process: cellular process (GO:0009987);; Molecular Function: metal ion binding (GO:0046872);; "	--	Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Nucleic acid binding protein OS=Zea mays (Maize) PE=2 SV=1	nucleic acid binding protein [Zea mays] 
comp203393_c1	0.002025457	1.898569874	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: effector dependent induction by symbiont of host immune response (GO:0080185);; Molecular Function: salicylic acid binding (GO:1901149);; Biological Process: regulation of jasmonic acid mediated signaling pathway (GO:2000022);; Biological Process: regulation of salicylic acid mediated signaling pathway (GO:2000031);; "	--	Regulatory protein NPR4 GN=NPR4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g012450 GN=Sb01g012450 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein ZEAMMB73_089872 [Zea mays]
comp206878_c0	0.009242533	2.549716361	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: detection of hypoxia (GO:0070483);; "	--	Ethylene-responsive transcription factor RAP2-2 GN=MLN21.1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si036647m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Setaria italica]
comp215300_c1	0.000384977	-2.280382168	down	--	--	"Biological Process: regionalization (GO:0003002);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: tropism (GO:0009606);; Biological Process: tissue development (GO:0009888);; Biological Process: flower development (GO:0009908);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: membrane (GO:0016020);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: organ development (GO:0048513);; Biological Process: developmental cell growth (GO:0048588);; Biological Process: phyllome development (GO:0048827);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Cellular Component: cell periphery (GO:0071944);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	BTB/POZ domain-containing protein At1g67900 GN=At1g67900 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si009604m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Setaria italica]
comp230487_c0	0.004481295	1.869957632	up	--	--	"Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Biological Process: RNA methylation (GO:0001510);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: primary shoot apical meristem specification (GO:0010072);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: specification of floral organ identity (GO:0010093);; Biological Process: organ boundary specification between lateral organs and the meristem (GO:0010199);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: positive regulation of cell fate commitment (GO:0010455);; Cellular Component: Cajal body (GO:0015030);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: carpel development (GO:0048440);; Biological Process: regulation of timing of organ formation (GO:0048504);; Biological Process: lateral root development (GO:0048527);; Biological Process: root cap development (GO:0048829);; Biological Process: negative regulation of cell division (GO:0051782);; "	--	NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si010417m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: NAC domain-containing protein 77-like [Setaria italica]
comp234729_c1	0.000114322	2.206338162	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: monoterpenoid biosynthetic process (GO:0016099);; Biological Process: diterpenoid biosynthetic process (GO:0016102);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: flavonoid 3'-monooxygenase activity (GO:0016711);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Molecular Function: heme binding (GO:0020037);; Molecular Function: ent-cassa-12,15-diene 11-hydroxylase activity (GO:0036202);; Biological Process: cellular response to water deprivation (GO:0042631);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Geraniol 8-hydroxylase GN=CYP76B10 OS=Swertia mussotii (Felwort) PE=1 SV=1	Uncharacterized protein GN=Si035322m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: geraniol 8-hydroxylase-like [Setaria italica]
comp242904_c0	3.06E-05	2.850159664	up	--	--	"Molecular Function: L-lactate dehydrogenase activity (GO:0004459);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: glycolysis (GO:0006096);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00016|7e-23|osa:4328012|Os02g0105400	L-lactate dehydrogenase OS=Zea mays (Maize) PE=2 SV=1	L-lactate dehydrogenase GN=Si017639m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: L-lactate dehydrogenase-like [Setaria italica]
comp130941_c0	0	5.844833225	up	--	--	--	--	--	--	--
comp195714_c0	1.49E-07	-3.00037969	down	[GEPR]	--	"Molecular Function: transporter activity (GO:0005215);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to nematode (GO:0009624);; Biological Process: gravitropism (GO:0009630);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: basipetal auxin transport (GO:0010540);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: potassium ion antiporter activity (GO:0022821);; Biological Process: root development (GO:0048364);; Biological Process: zinc ion homeostasis (GO:0055069);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of stomatal closure (GO:0090333);; "	--	Protein ZINC INDUCED FACILITATOR-LIKE 1 GN=ZIFL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: protein ZINC INDUCED FACILITATOR 1-like [Setaria italica]
comp209683_c0	0.003059509	-1.966915352	down	--	--	"Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to virus (GO:0009615);; Biological Process: response to bacterium (GO:0009617);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to UV-B (GO:0010224);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: regulation of anthocyanin biosynthetic process (GO:0031540);; Biological Process: developmental process (GO:0032502);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	Thaumatin-like protein 1 (Precursor) OS=Prunus persica (Peach) PE=2 SV=1	Uncharacterized protein GN=Si036475m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: thaumatin-like protein 1-like [Setaria italica]
comp229118_c0	4.96E-06	2.546870234	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Cellular Component: cell part (GO:0044464);; Biological Process: meristem development (GO:0048507);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_350135 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_350135 [Zea mays]
comp217427_c0	0.001372802	-2.287978608	down	--	--	--	--	Uncharacterized protein At4g15970 GN=At4g15970 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si001867m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At4g15970-like [Setaria italica]
comp216565_c2	0.00305101	-3.786915626	down	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; "	--	--	Retrotransposon protein, putative, Ty1-copia subclass GN=OSJNBa0011H24.4 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	putative integrase [Oryza sativa Japonica Group] 
comp227958_c1	0.003945062	2.147447003	up	[S]	Function unknown 	"Biological Process: immune response-regulating signaling pathway (GO:0002764);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: pattern specification process (GO:0007389);; Biological Process: epidermis development (GO:0008544);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development (GO:0009790);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: defense response signaling pathway, resistance gene-independent (GO:0010204);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: response to organic cyclic compound (GO:0014070);; Cellular Component: membrane (GO:0016020);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: cell growth (GO:0016049);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transmembrane receptor protein kinase activity (GO:0019199);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: cell differentiation (GO:0030154);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: regulation of growth (GO:0040008);; Biological Process: cell wall modification (GO:0042545);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: gametophyte development (GO:0048229);; Biological Process: floral organ development (GO:0048437);; Biological Process: floral whorl development (GO:0048438);; Biological Process: meristem development (GO:0048507);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: phyllome development (GO:0048827);; Biological Process: cell division (GO:0051301);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: cellular macromolecule localization (GO:0070727);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	LRR receptor-like serine/threonine-protein kinase EFR (Precursor) GN=EFR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si000143m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like isoform X1 [Setaria italica]
comp214679_c1	0.000136684	-3.063864798	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: external side of plasma membrane (GO:0009897);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of cell proliferation (GO:0042127);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Cellular Component: apoplast (GO:0048046);; Biological Process: mucilage metabolic process involved seed coat development (GO:0048359);; Biological Process: mucilage extrusion from seed coat (GO:0080001);; "	--	Subtilisin-like protease (Precursor) GN=K8K14.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si021287m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: subtilisin-like protease-like [Setaria italica]
comp198749_c0	0.004379389	-1.864816973	down	--	--	--	--	--	Uncharacterized protein GN=Si008698m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101780271 [Setaria italica]
comp216278_c0	0.000486693	-2.161081215	down	--	--	"Molecular Function: triglyceride lipase activity (GO:0004806);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: plastid (GO:0009536);; Cellular Component: intracellular organelle (GO:0043229);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si000571m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_663476 [Zea mays]
comp200644_c0	1.05E-09	3.370583682	up	--	--	"Biological Process: defense response (GO:0006952);; Biological Process: metabolic process (GO:0008152);; Biological Process: cellular process (GO:0009987);; "	--	Ethylene-responsive transcription factor ERF109 GN=ERF109 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os02g0764700 [Oryza sativa Japonica Group] 
comp181180_c0	0.000508125	3.098474235	up	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: response to cold (GO:0009409);; Biological Process: post-embryonic development (GO:0009791);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: response to chemical stimulus (GO:0042221);; Molecular Function: ion binding (GO:0043167);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: regulation of biological process (GO:0050789);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Genomic DNA, chromosome 3, P1 clone:MKA23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=1	protease inhibitor/seed storage/LTP family protein [Arabidopsis thaliana] 
comp228160_c0	0.003964679	1.830598862	up	[P]	Inorganic ion transport and metabolism 	"Molecular Function: manganese ion transmembrane transporter activity (GO:0005384);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Cellular Component: endomembrane system (GO:0012505);; Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);; Molecular Function: sodium ion transmembrane transporter activity (GO:0015081);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular cation homeostasis (GO:0030003);; Cellular Component: cytoplasmic vesicle membrane (GO:0030659);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: sodium ion transmembrane transport (GO:0035725);; Biological Process: response to cation stress (GO:0043157);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: transmembrane transport (GO:0055085);; Cellular Component: cell periphery (GO:0071944);; "	--	Cation/calcium exchanger 1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si021538m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cation/calcium exchanger 1-like [Setaria italica]
comp216864_c0	0.000456612	-2.501293703	down	--	--	"Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cell part (GO:0044464);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Zinc finger protein ZAT5 GN=ZAT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: zinc finger protein ZAT5-like [Setaria italica]
comp217188_c0	0.000849678	-2.924637745	down	--	--	"Biological Process: xenobiotic metabolic process (GO:0006805);; Biological Process: response to stress (GO:0006950);; Biological Process: metabolic process (GO:0008152);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; "	K13495|1e-163|osa:4344177|Os07g0660500	Cis-zeatin O-glucosyltransferase 1 GN=CISZOG1 OS=Zea mays (Maize) PE=1 SV=1	Uncharacterized protein GN=Si029740m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cis-zeatin O-glucosyltransferase 1-like [Setaria italica]
comp221570_c0	7.36E-07	2.818012907	up	--	--	"Cellular Component: nucleolus (GO:0005730);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to chitin (GO:0010200);; Cellular Component: mediator complex (GO:0016592);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	--	Trihelix transcription factor GT-3b GN=F16M14.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si020122m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: trihelix transcription factor GT-3b-like [Setaria italica]
comp221245_c2	0.000127576	-4.275722224	down	[RTKL]	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: peptide receptor activity (GO:0001653);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0007178);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to fungus (GO:0009620);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: response to UV-B (GO:0010224);; Biological Process: phloem transport (GO:0010233);; Biological Process: tapetal cell fate specification (GO:0010234);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: negative regulation of defense response (GO:0031348);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: amino acid import (GO:0043090);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Cellular Component: protein complex (GO:0043234);; Biological Process: proteasome assembly (GO:0043248);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: protein autophosphorylation (GO:0046777);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: stamen development (GO:0048443);; Biological Process: root hair elongation (GO:0048767);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: regulation of seedling development (GO:1900140);; "	--	Serine/threonine-protein kinase BRI1-like 2 (Precursor) GN=F14H20.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g026940 GN=Sb01g026940 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: putative leucine-rich repeat receptor-like protein kinase family protein [Zea mays]
comp220103_c0	2.37E-05	-2.786319432	down	--	--	--	--	UPF0481 protein At3g47200 GN=At3g47200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026268m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774033 [Setaria italica]
comp219112_c1	1.88E-08	3.005787352	up	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plastid (GO:0009536);; Biological Process: response to chitin (GO:0010200);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: negative regulation of growth (GO:0045926);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: anatomical structure development (GO:0048856);; "	--	Zinc finger protein ZAT12 GN=MMN10.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si003051m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger protein ZAT12-like [Setaria italica]
comp223532_c0	0.003291009	1.852972841	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: binding (GO:0005488);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: response to hormone stimulus (GO:0009725);; "	K09422|7e-16|sbi:SORBI_04g026480|hypothetical protein	Myb-related protein Myb4 GN=OSJNBa0073E02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Myb-related protein Myb4 GN=F775_30010 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	Myb-related protein Myb4 [Aegilops tauschii]
comp130252_c0	0.007745622	-1.81224697	down	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; "	--	F-box protein At1g67340 GN=At1g67340 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein B1793G04.24 GN=B1793G04.24 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os01g0921800 [Oryza sativa Japonica Group] 
comp231255_c0	0.000146708	2.236325693	up	[RTKL]	--	"Biological Process: transition metal ion transport (GO:0000041);; Biological Process: MAPK cascade (GO:0000165);; Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein serine/threonine kinase activity (GO:0004675);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: response to insect (GO:0009625);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: phosphorylation (GO:0016310);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: anion binding (GO:0043168);; Biological Process: macromolecule modification (GO:0043412);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to salt stress (GO:0071472);; Biological Process: regulation of stomatal closure (GO:0090333);; Biological Process: negative regulation of defense response to bacterium (GO:1900425);; "	--	L-type lectin-domain containing receptor kinase IV.1 (Precursor) GN=F13M22.21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative receptor-type protein kinase LRK1 GN=OJ1606_D04.122 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	putative receptor-type protein kinase LRK1 [Oryza sativa Japonica Group]
comp225362_c1	0.003170718	-2.191865546	down	[V]	Defense mechanisms 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: iron ion transport (GO:0006826);; Biological Process: drug transmembrane transport (GO:0006855);; Biological Process: cellular iron ion homeostasis (GO:0006879);; Cellular Component: plastid (GO:0009536);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: citrate transmembrane transporter activity (GO:0015137);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to nitric oxide (GO:0071732);; "	--	MATE efflux family protein 2, chloroplastic (Precursor) GN=DTX44 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si025830m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: MATE efflux family protein 2, chloroplastic-like isoform X1 [Setaria italica]
comp243720_c0	1.97E-06	2.625617617	up	[L]	Replication, recombination and repair 	--	--	--	Putative uncharacterized protein Sb08g020050 GN=Sb08g020050 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g020050 [Sorghum bicolor] 
comp228958_c0	0.000139309	-2.43708001	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si014558m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101783158 [Setaria italica]
comp212808_c0	7.31E-11	4.889269193	up	--	--	--	--	--	--	--
comp226806_c0	0.002022024	-2.016252679	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: response to nitrate (GO:0010167);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: glucuronoxylan 4-O-methyltransferase activity (GO:0030775);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	Glucuronoxylan 4-O-methyltransferase 1 GN=GXM1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026677m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Setaria italica]
comp219434_c0	0.004474498	2.109450366	up	[D]	Cell cycle control, cell division, chromosome partitioning 	"Biological Process: filamentous growth (GO:0030447);; Biological Process: cellular response to stress (GO:0033554);; "	--	--	Uncharacterized protein GN=Si005170m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myosin-10-like isoform X2 [Setaria italica]
comp231840_c0	0.002382795	1.921754876	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; "	--	--	Uncharacterized protein GN=Si006091m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101760138 isoform X4 [Setaria italica]
comp231646_c3	0.002619567	1.901033538	up	--	--	"Cellular Component: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (GO:0000276);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to chitin (GO:0010200);; Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);; Biological Process: ATP synthesis coupled proton transport (GO:0015986);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances (GO:0016820);; Molecular Function: cobalt ion binding (GO:0050897);; "	--	ATP synthase protein MI25 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	Sorghum bicolor URF209 OS=Sorghum bicolor (Sorghum) PE=2 SV=1	"urf209; orf25 [Sorghum bicolor]"
comp228349_c0	8.13E-09	-4.037510806	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: RNA processing (GO:0006396);; Biological Process: catabolic process (GO:0009056);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: glucuronoxylan 4-O-methyltransferase activity (GO:0030775);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to stimulus (GO:0050896);; "	--	Glucuronoxylan 4-O-methyltransferase 2 GN=GXM2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb05g007090 GN=Sb05g007090 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g007090 [Sorghum bicolor] 
comp221845_c0	0.00180309	1.915350913	up	[G]	Carbohydrate transport and metabolism 	"Cellular Component: plastid (GO:0009536);; "	--	--	Uncharacterized protein GN=OB02G31240 OS=Oryza brachyantha PE=4 SV=1	PREDICTED: uncharacterized protein LOC100825740 [Brachypodium distachyon]
comp229827_c0	0.000508065	-2.1283155	down	[E]	Amino acid transport and metabolism 	"Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: alcohol metabolic process (GO:0006066);; Biological Process: response to cold (GO:0009409);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: long-chain-alcohol oxidase activity (GO:0046577);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Long-chain-alcohol oxidase FAO2 GN=FAO2 OS=Lotus japonicus (Lotus corniculatus var. japonicus) PE=2 SV=1	Uncharacterized protein GN=Si016380m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: long-chain-alcohol oxidase FAO2-like [Setaria italica]
comp235137_c1	0.000453147	2.283660796	up	--	--	--	--	--	Uncharacterized protein (Fragment) OS=Chlorella protothecoides (Green microalga) PE=2 SV=1	hypothetical protein CHLPROCp009, partial [Auxenochlorella protothecoides]
comp218868_c0	0.000221356	-2.221052993	down	--	--	"Cellular Component: plastid (GO:0009536);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Proline-rich receptor-like protein kinase PERK2 GN=PERK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762806 [Setaria italica]
comp230455_c0	0.001734967	-2.012269069	down	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to salt stress (GO:0009651);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: petal formation (GO:0048451);; Biological Process: sepal formation (GO:0048453);; "	--	Scarecrow-like protein 28 GN=SCL28 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si008220m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: scarecrow-like protein 28-like [Setaria italica]
comp228383_c1	2.57E-10	3.380901655	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to light intensity (GO:0009642);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to water deprivation (GO:0042631);; Cellular Component: cell part (GO:0044464);; "	--	Acidic endochitinase SE2 (Precursor) GN=SE2 OS=Beta vulgaris (Sugar beet) PE=1 SV=1	Uncharacterized protein GN=Si002396m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: hevamine-A-like [Setaria italica]
comp218855_c0	1.72E-06	-2.782940625	down	--	--	"Molecular Function: O-acyltransferase activity (GO:0008374);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; "	--	"3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase GN=TAX10 OS=Taxus canadensis (Canadian yew) PE=1 SV=1"	Uncharacterized protein GN=Si022109m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	"PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase-like [Setaria italica]"
comp233547_c2	0.009534444	1.918003378	up	[K]	Transcription 	"Molecular Function: RNA binding transcription antitermination factor activity (GO:0001072);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: threonine-type endopeptidase activity (GO:0004298);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: proteasome core complex (GO:0005839);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: rRNA processing (GO:0006364);; Molecular Function: serine-type peptidase activity (GO:0008236);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: nucleotide biosynthetic process (GO:0009165);; Biological Process: response to desiccation (GO:0009269);; Cellular Component: plastid (GO:0009536);; Biological Process: cold acclimation (GO:0009631);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development (GO:0009790);; Biological Process: seed germination (GO:0009845);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: anchored to membrane (GO:0031225);; Biological Process: transcription antitermination (GO:0031564);; Biological Process: DNA duplex unwinding (GO:0032508);; Biological Process: regulation of cellular respiration (GO:0043457);; Biological Process: seed development (GO:0048316);; Biological Process: stamen development (GO:0048443);; Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603);; "	--	Glycine-rich protein 2 GN=GRP-2 OS=Nicotiana sylvestris (Wood tobacco) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_047398 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_047398 [Zea mays]
comp225161_c0	0.006020097	1.785771886	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: cellular process (GO:0009987);; Cellular Component: chloroplast part (GO:0044434);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein Sb07g024170 GN=Sb07g024170 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g024170 [Sorghum bicolor] 
comp209934_c0	0.004778984	-2.563185759	down	[G]	Carbohydrate transport and metabolism 	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: iron ion transport (GO:0006826);; Biological Process: cellular iron ion homeostasis (GO:0006879);; Biological Process: seed germination (GO:0009845);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: citrate transmembrane transporter activity (GO:0015137);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: mannan endo-1,4-beta-mannosidase activity (GO:0016985);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to ethylene stimulus (GO:0071369);; Biological Process: cellular response to nitric oxide (GO:0071732);; Cellular Component: cell periphery (GO:0071944);; "	--	Mannan endo-1,4-beta-mannosidase 1 (Precursor) GN=P0671D01.40 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si001544m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: mannan endo-1,4-beta-mannosidase 1-like [Setaria italica]
comp124342_c0	0.003171541	-3.318408551	down	--	--	--	--	--	Uncharacterized protein GN=OB09G19610 OS=Oryza brachyantha PE=4 SV=1	Os09g0462300 [Oryza sativa Japonica Group] 
comp229514_c0	2.28E-05	2.44674286	up	[R]	General function prediction only 	"Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Leucine-rich repeat extensin-like protein 6 (Precursor) GN=LRX6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb04g026250 GN=Sb04g026250 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g026250 [Sorghum bicolor] 
comp226780_c2	0.007958825	-1.976892651	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si006476m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774596 isoform X1 [Setaria italica]
comp221908_c0	0.000376618	-2.197178419	down	[V]	Defense mechanisms 	"Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: drug transmembrane transport (GO:0006855);; Biological Process: response to organic substance (GO:0010033);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: membrane (GO:0016020);; Molecular Function: transmembrane transporter activity (GO:0022857);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: heterocycle metabolic process (GO:0046483);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: biological regulation (GO:0065007);; "	--	MATE efflux family protein 8 GN=F3L12.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Putative uncharacterized protein Sb01g000440 GN=Sb01g000440 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g000440 [Sorghum bicolor] 
comp223120_c0	0.009600304	1.849740026	up	--	--	"Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si035609m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: major facilitator superfamily domain-containing protein 5-like isoform X2 [Setaria italica]
comp216155_c0	0.00023075	2.263788109	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: pyruvate kinase activity (GO:0004743);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: cytoskeleton organization (GO:0007010);; Biological Process: lipid biosynthetic process (GO:0008610);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: seed maturation (GO:0010431);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: potassium ion binding (GO:0030955);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: response to cadmium ion (GO:0046686);; "	K00873|1e-129|cre:CHLREDRAFT_136854|PYK1	Pyruvate kinase, cytosolic isozyme OS=Glycine max (Soybean) PE=1 SV=1	Pyruvate kinase GN=PYU1_G001224 OS=Pythium ultimum PE=3 SV=1	pyruvate kinase [Achlya bisexualis]
comp234322_c0	0.002375702	1.940620916	up	[M]	Cell wall/membrane/envelope biogenesis 	"Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: cell tip growth (GO:0009932);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: carbohydrate biosynthetic process (GO:0016051);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Molecular Function: cellulose synthase activity (GO:0016759);; Biological Process: cellulose metabolic process (GO:0030243);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: pollen tube development (GO:0048868);; Molecular Function: mannan synthase activity (GO:0051753);; "	--	Probable xyloglucan glycosyltransferase 9 GN=OSJNBa0072F13.8 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si034503m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable xyloglucan glycosyltransferase 9-like [Setaria italica]
comp192578_c0	0.007836816	-3.16530996	down	--	--	"Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity (GO:0004315);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: beta-ketoacyl-acyl-carrier-protein synthase III activity (GO:0033818);; Biological Process: cuticle development (GO:0042335);; "	K00648|2e-45|sbi:SORBI_06g030380|hypothetical protein	3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic (Precursor) OS=Spinacia oleracea (Spinach) PE=1 SV=1	3-oxoacyl-synthase III, mRNA GN=ZEAMMB73_886168 OS=Zea mays (Maize) PE=4 SV=1	3-oxoacyl-synthase III, mRNA [Zea mays]
comp227756_c0	0.008952808	-1.832846519	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; "	K09422|1e-69|osa:4345885|Os08g0486300	Transcription factor MYB39 GN=dl4925c OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si014103m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb-related protein Hv33-like [Setaria italica]
comp130223_c0	1.34E-05	2.478112014	up	--	--	--	--	--	Uncharacterized protein GN=Si031615m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101779667 [Setaria italica]
comp218256_c0	0.000139579	-2.623737778	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: RNA processing (GO:0006396);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of biological process (GO:0050789);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb07g025110 GN=Sb07g025110 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g025110 [Sorghum bicolor] 
comp221560_c1	0.000765738	-2.330244774	down	--	--	"Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: adenyl ribonucleotide binding (GO:0032559);; Molecular Function: anion binding (GO:0043168);; "	--	Putative disease resistance protein At1g58400 GN=At1g58400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Putative uncharacterized protein Sb10g019620 GN=Sb10g019620 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g019620 [Sorghum bicolor] 
comp195792_c0	0.000455763	-2.330893871	down	--	--	"Molecular Function: GDP-fucose transmembrane transporter activity (GO:0005457);; Molecular Function: UDP-galactose transmembrane transporter activity (GO:0005459);; Molecular Function: UDP-glucose transmembrane transporter activity (GO:0005460);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein glycosylation (GO:0006486);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: response to nematode (GO:0009624);; Biological Process: GDP-fucose transport (GO:0015783);; Biological Process: UDP-glucose transport (GO:0015786);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: UDP-galactose transmembrane transport (GO:0072334);; "	--	Uncharacterized membrane protein At1g06890 GN=At1g06890 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	cDNA clone:J013119D13, full insert sequence GN=Os06g0506200 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os06g0506200 [Oryza sativa Japonica Group] 
comp230020_c0	0.000196955	2.266788634	up	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: flower development (GO:0009908);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: gene silencing (GO:0016458);; Biological Process: cell cycle process (GO:0022402);; Biological Process: negative regulation of cellular metabolic process (GO:0031324);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Cellular Component: intracellular non-membrane-bounded organelle (GO:0043232);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: chromosome organization (GO:0051276);; Biological Process: regulation of primary metabolic process (GO:0080090);; "	--	WEB family protein At5g16730, chloroplastic (Precursor) GN=At5g16730 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI2G04180 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: uncharacterized protein LOC100821711 [Brachypodium distachyon]
comp219290_c0	4.21E-05	2.721370376	up	--	--	--	--	--	Uncharacterized protein GN=Si002401m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 38-like [Setaria italica]
comp209269_c1	0.008610702	-2.882087127	down	[I]	Lipid transport and metabolism 	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: metabolic process (GO:0008152);; Biological Process: tetracyclic triterpenoid biosynthetic process (GO:0010686);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: intramolecular transferase activity (GO:0016866);; Molecular Function: cycloartenol synthase activity (GO:0016871);; Biological Process: pentacyclic triterpenoid biosynthetic process (GO:0019745);; Molecular Function: lupeol synthase activity (GO:0042299);; Molecular Function: beta-amyrin synthase activity (GO:0042300);; "	--	Achilleol B synthase OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si010569m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: achilleol B synthase-like isoform X3 [Setaria italica]
comp209374_c0	0.002600909	1.867120465	up	[R]	General function prediction only 	"Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: phospholipid binding (GO:0005543);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: cellular membrane fusion (GO:0006944);; Molecular Function: ARF GTPase activator activity (GO:0008060);; Biological Process: pollen development (GO:0009555);; Biological Process: cell growth (GO:0016049);; Biological Process: endosomal transport (GO:0016197);; Biological Process: Golgi vesicle transport (GO:0048193);; "	--	Probable ADP-ribosylation factor GTPase-activating protein AGD13 GN=AGD13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si031298m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [Setaria italica]
comp198385_c0	3.08E-07	-2.893130374	down	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: ion transport (GO:0006811);; Biological Process: cell communication (GO:0007154);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: tissue development (GO:0009888);; Biological Process: meristem initiation (GO:0010014);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: xylem development (GO:0010089);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Molecular Function: glucuronosyltransferase activity (GO:0015020);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular response to stress (GO:0033554);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: xylan biosynthetic process (GO:0045492);; Molecular Function: glucuronoxylan glucuronosyltransferase activity (GO:0080116);; "	--	UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 GN=F17M5.90/F17M5.100 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si034817m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like isoform X1 [Setaria italica]
comp203197_c0	7.53E-06	2.476172777	up	--	--	--	--	--	Putative uncharacterized protein Sb01g009700 GN=Sb01g009700 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_479732 [Zea mays]
comp215181_c2	0.000130048	2.378405843	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si001587m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein notum homolog [Setaria italica]
comp228632_c0	0.001458017	-2.047359466	down	[V]	Defense mechanisms 	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: transpiration (GO:0010148);; Cellular Component: membrane (GO:0016020);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: abscisic acid transport (GO:0080168);; "	--	ABC transporter G family member 14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si013314m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: ABC transporter G family member 14-like [Setaria italica]
comp223200_c1	0.001404519	-2.004381351	down	--	--	"Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: hydrolase activity (GO:0016787);; "	--	Arabinogalactan protein 1 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative lipid acyl hydrolase GN=LOC_Os03g57080 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: patatin-13-like [Setaria italica]
comp225961_c0	1.35E-07	-2.996251238	down	--	--	--	--	--	Putative uncharacterized protein OS=Medicago truncatula (Barrel medic) PE=4 SV=1	--
comp229527_c0	0.003537379	-1.928857686	down	[G]	Carbohydrate transport and metabolism 	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: xylan 1,4-beta-xylosidase activity (GO:0009044);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: seed coat development (GO:0010214);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: arabinan catabolic process (GO:0031222);; Biological Process: xylan catabolic process (GO:0045493);; Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);; Biological Process: response to arsenic-containing substance (GO:0046685);; Cellular Component: apoplast (GO:0048046);; "	--	Probable beta-D-xylosidase 7 (Precursor) GN=BXL7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si026007m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable beta-D-xylosidase 7-like [Setaria italica]
comp227233_c0	0.000283869	3.349657084	up	[K]	Transcription 	"Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Cellular Component: ribonucleoprotein complex (GO:0030529);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; "	K02879|9e-32|zma:100274150|hypothetical protein LOC100274150	DNA-directed RNA polymerase subunit alpha GN=rpoA OS=Emiliania huxleyi (Pontosphaera huxleyi) PE=3 SV=1	DNA-directed RNA polymerase subunit alpha GN=rpoA OS=Emiliania huxleyi (Pontosphaera huxleyi) PE=3 SV=1	RNA polymerase alpha subunit [Emiliania huxleyi] 
comp202249_c0	2.22E-16	6.147400595	up	--	--	--	--	--	--	--
comp166940_c1	0.001010234	2.210386585	up	--	--	--	K13464|5e-06|zma:100284894|gpm925	--	Uncharacterized protein GN=F775_02121 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_02121 [Aegilops tauschii]
comp221863_c0	0.009686024	1.707718847	up	[T]	Signal transduction mechanisms 	"Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to wounding (GO:0009611);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: stomatal lineage progression (GO:0010440);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: interspecies interaction between organisms (GO:0044419);; Cellular Component: apoplast (GO:0048046);; Biological Process: ovule development (GO:0048481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response to fungus (GO:0050832);; "	--	Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb05g007150 GN=Sb05g007150 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_05g007150 [Sorghum bicolor] 
comp129795_c0	0.000913331	-2.067860965	down	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: defense response (GO:0006952);; Biological Process: catabolic process (GO:0009056);; Biological Process: response to abiotic stimulus (GO:0009628);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: response to chemical stimulus (GO:0042221);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: biological regulation (GO:0065007);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	Formin-like protein 14 GN=FH14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	TPA: hypothetical protein ZEAMMB73_784009, partial [Zea mays]
comp223101_c1	0.000147153	2.248302475	up	--	--	"Cellular Component: plastid (GO:0009536);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si003152m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101772564 [Setaria italica]
comp182054_c0	0.001952076	3.323086301	up	--	--	--	--	Cyclin-dependent protein kinase inhibitor SIM GN=SIM OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein OSJNBa0060O17.6 GN=OSJNBa0060O17.6 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein [Oryza sativa Japonica Group]
comp230040_c0	0.004657363	1.800331571	up	[M]	Cell wall/membrane/envelope biogenesis 	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: pollen germination (GO:0009846);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Cellular Component: integral to Golgi membrane (GO:0030173);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: mannan synthase activity (GO:0051753);; "	--	Mixed-linked glucan synthase 4 GN=P0013G11.11 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Uncharacterized protein GN=Si028885m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: mixed-linked glucan synthase 4-like [Setaria italica]
comp128960_c0	9.56E-06	4.429160856	up	--	--	--	--	--	--	--
comp208710_c1	3.88E-06	-4.733685606	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026061m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein OsJ_34501 [Oryza sativa Japonica Group]
comp223979_c0	3.39E-05	-2.745619096	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: pollen germination (GO:0009846);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Cellular Component: integral to Golgi membrane (GO:0030173);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: root hair elongation (GO:0048767);; Biological Process: defense response to fungus (GO:0050832);; Molecular Function: mannan synthase activity (GO:0051753);; Biological Process: cell wall thickening (GO:0052386);; "	K00770|0.0|sbi:SORBI_08g017750|hypothetical protein	Cellulose synthase-like protein D4 GN=OsJ_035046 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb08g017750 GN=Sb08g017750 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g017750 [Sorghum bicolor] 
comp217063_c0	0.00128361	2.173496968	up	--	--	"Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: ion transport (GO:0006811);; Biological Process: defense response (GO:0006952);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cellular response to starvation (GO:0009267);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: gibberellin metabolic process (GO:0009685);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: longitudinal axis specification (GO:0009942);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: response to chitin (GO:0010200);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: establishment of cell polarity (GO:0030010);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of programmed cell death (GO:0043067);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: innate immune response (GO:0045087);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: negative regulation of cellular process (GO:0048523);; Biological Process: regulation of defense response to virus by host (GO:0050691);; Biological Process: regulation of immune response (GO:0050776);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: organic substance transport (GO:0071702);; Biological Process: monocarboxylic acid biosynthetic process (GO:0072330);; "	--	Probable WRKY transcription factor 40 GN=WRKY40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si017443m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 40-like [Setaria italica]
comp231131_c0	0.001523063	1.963388895	up	[H]	Coenzyme transport and metabolism 	"Cellular Component: mitochondrion (GO:0005739);; "	--	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic (Precursor) GN=At1g62930 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb01g026260 GN=Sb01g026260 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor] 
comp210298_c0	1.75E-08	3.003018551	up	--	--	--	--	--	Uncharacterized protein GN=ZEAMMB73_194925 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101755414 [Setaria italica]
comp129915_c0	3.04E-06	2.61959726	up	--	--	--	--	Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	--	--
comp230061_c0	1.51E-07	3.058420459	up	[R]	General function prediction only 	"Molecular Function: chitinase activity (GO:0004568);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Molecular Function: chitin binding (GO:0008061);; Molecular Function: endochitinase activity (GO:0008843);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: beta-N-acetylglucosaminidase activity (GO:0016231);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: biological regulation (GO:0065007);; Cellular Component: cell periphery (GO:0071944);; "	--	Chitinase 10 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_434868 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: chitinase 10-like [Setaria italica]
comp491406_c0	2.04E-05	4.337556614	up	--	--	--	--	--	--	--
comp128682_c0	0.008610702	-2.882087127	down	--	--	--	K14325|1e-09|rcu:RCOM_1576190|ribonucleic acid binding protein S1, putative	Extensin (Precursor) GN=HRGP OS=Zea mays (Maize) PE=2 SV=1	Uncharacterized protein GN=Si040032m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein AURANDRAFT_70714, partial [Aureococcus anophagefferens]
comp227024_c0	8.97E-06	2.461756402	up	--	--	"Biological Process: immune effector process (GO:0002252);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Biological Process: nitric oxide mediated signal transduction (GO:0007263);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: response to chitin (GO:0010200);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; "	--	Probable WRKY transcription factor 53 GN=WRKY53 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb05g001170 GN=Sb05g001170 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g001170 [Sorghum bicolor] 
comp216657_c0	4.52E-11	3.470400171	up	--	--	"Biological Process: dephosphorylation (GO:0016311);; Molecular Function: phosphatase activity (GO:0016791);; Biological Process: negative regulation of MAP kinase activity (GO:0043407);; "	--	Probable tyrosine-protein phosphatase At1g05000 GN=At1g05000 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si007272m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable tyrosine-protein phosphatase At1g05000-like [Setaria italica]
comp165833_c0	0.000136344	-2.715275092	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: polyamine catabolic process (GO:0006598);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cinnamic acid biosynthetic process (GO:0009800);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: seed germination (GO:0009845);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to UV-B (GO:0010224);; Biological Process: cellular response to sulfur starvation (GO:0010438);; Biological Process: regulation of glucosinolate biosynthetic process (GO:0010439);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: mucilage biosynthetic process involved in seed coat development (GO:0048354);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of phenylpropanoid metabolic process (GO:2000762);; "	K09422|4e-35|sbi:SORBI_06g027180|hypothetical protein	Myb-related protein Zm1 OS=Zea mays (Maize) PE=2 SV=1	P-type R2R3 Myb protein (Fragment) GN=Myb6 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	P-type R2R3 Myb protein [Sorghum bicolor]
comp233803_c0	3.46E-05	2.367269613	up	--	--	--	--	--	--	--
comp210813_c0	9.66E-05	-2.488593722	down	[G]	Carbohydrate transport and metabolism 	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: xylan 1,4-beta-xylosidase activity (GO:0009044);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: seed coat development (GO:0010214);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: extracellular matrix (GO:0031012);; Biological Process: arabinan catabolic process (GO:0031222);; Biological Process: xylan catabolic process (GO:0045493);; Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);; Biological Process: response to arsenic-containing substance (GO:0046685);; Cellular Component: apoplast (GO:0048046);; Biological Process: multi-organism process (GO:0051704);; "	--	Probable beta-D-xylosidase 2 (Precursor) GN=BXL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si000314m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like isoform X1 [Setaria italica]
comp196830_c0	0.000147958	2.212276392	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Biological Process: response to heat (GO:0009408);; Biological Process: phototropism (GO:0009638);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: cellulose biosynthetic process (GO:0030244);; Molecular Function: heat shock protein binding (GO:0031072);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	Chaperone protein dnaJ 6 GN=MOJ9.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si003039m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: chaperone protein dnaJ 6-like [Setaria italica]
comp217032_c0	0.000377999	2.091423408	up	--	--	"Molecular Function: catalytic activity (GO:0003824);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si002368m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101778419 isoform X1 [Setaria italica] 
comp231550_c0	0.007161356	-2.498763918	down	[E]	Amino acid transport and metabolism 	"Molecular Function: transporter activity (GO:0005215);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: lithium ion transport (GO:0010351);; Molecular Function: nitrate transmembrane transporter activity (GO:0015112);; Molecular Function: high affinity oligopeptide transporter activity (GO:0015334);; Biological Process: proline transport (GO:0015824);; Biological Process: chlorophyll catabolic process (GO:0015996);; Cellular Component: membrane (GO:0016020);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: dipeptide transporter activity (GO:0042936);; Molecular Function: tripeptide transporter activity (GO:0042937);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: tripeptide transport (GO:0042939);; Biological Process: response to leucine (GO:0043201);; Biological Process: response to histidine (GO:0080052);; Biological Process: response to phenylalanine (GO:0080053);; Biological Process: abscisic acid transport (GO:0080168);; Molecular Function: abscisic acid transporter activity (GO:0090440);; "	--	Probable peptide/nitrate transporter At1g62200 GN=At1g62200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=BRADI1G68820 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: peptide transporter PTR2-like [Brachypodium distachyon]
comp225229_c0	0.007489869	-1.943378519	down	--	--	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi apparatus (GO:0005794);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen (GO:0016709);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	indole-2-monooxygenase GN=CYP71C4 OS=Zea mays (Maize) PE=1 SV=1	Uncharacterized protein GN=Si013542m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	hypothetical protein SORBIDRAFT_07g000520 [Sorghum bicolor] 
comp210266_c0	0.007951616	2.397623467	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: RNA binding (GO:0003723);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: translation (GO:0006412);; Cellular Component: plastid (GO:0009536);; Cellular Component: ribonucleoprotein complex (GO:0030529);; "	K02520|5e-40|ppp:PHYPADRAFT_172219|hypothetical protein	Translation initiation factor IF-3, chloroplastic GN=infC OS=Pyropia yezoensis (Red alga) PE=3 SV=1	Translation initiation factor 3 GN=infC OS=Pyropia haitanensis (Red seaweed) PE=4 SV=1	translation initiation factor IF-3 [Paulinella chromatophora] 
comp172646_c0	0.009069203	-1.800804612	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: glutathione transferase activity (GO:0004364);; Molecular Function: glutathione peroxidase activity (GO:0004602);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: toxin catabolic process (GO:0009407);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: indole-containing compound metabolic process (GO:0042430);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: glutathione binding (GO:0043295);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: defense response to fungus (GO:0050832);; "	K00799|1e-130|sbi:SORBI_08g007340|hypothetical protein	Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=2	Putative uncharacterized protein GN=OsI_01961 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	hypothetical protein OsI_01961 [Oryza sativa Indica Group]
comp219304_c0	2.36E-07	2.809374525	up	[R]	General function prediction only 	"Biological Process: glutamine metabolic process (GO:0006541);; Molecular Function: hydrolase activity (GO:0016787);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein P0443D08.44 GN=P0443D08.44 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os01g0138800 [Oryza sativa Japonica Group] 
comp205642_c1	0.001850528	-2.409564901	down	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: glycolysis (GO:0006096);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Molecular Function: calcium-dependent protein serine/threonine kinase activity (GO:0009931);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Biological Process: growth (GO:0040007);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: regulation of circadian rhythm (GO:0042752);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: leaf development (GO:0048366);; Biological Process: lateral root development (GO:0048527);; Molecular Function: phosphatidic acid binding (GO:0070300);; Biological Process: primary root development (GO:0080022);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; "	K14498|1e-87|sbi:SORBI_01g014720|hypothetical protein	Serine/threonine-protein kinase SAPK10 GN=OSJNBb0007E22.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb01g014720 GN=Sb01g014720 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g014720 [Sorghum bicolor] 
comp164533_c0	0.005072745	1.789208515	up	[K]	Transcription 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: transcription coactivator activity (GO:0003713);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein folding (GO:0006457);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; "	K03627|6e-88|sbi:SORBI_10g023010|hypothetical protein	Multiprotein-bridging factor 1c GN=MBF1C OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si007421m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: multiprotein-bridging factor 1c-like [Setaria italica]
comp221842_c1	0.002086322	2.311030184	up	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Biological Process: vacuole organization (GO:0007033);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: proanthocyanidin biosynthetic process (GO:0010023);; Biological Process: response to UV-B (GO:0010224);; Biological Process: organ senescence (GO:0010260);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Molecular Function: ion binding (GO:0043167);; Cellular Component: cell part (GO:0044464);; Molecular Function: naringenin 3-dioxygenase activity (GO:0045486);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: seed development (GO:0048316);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	--	Thebaine 6-O-demethylase GN=T6ODM OS=Papaver somniferum (Opium poppy) PE=1 SV=1	Putative uncharacterized protein Sb09g002350 GN=Sb09g002350 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_09g002350 [Sorghum bicolor] 
comp234046_c4	0.001918157	-2.037791482	down	[V]	Defense mechanisms 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: cell adhesion (GO:0007155);; Biological Process: regulation of cell size (GO:0008361);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to blue light (GO:0009637);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: vernalization response (GO:0010048);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: formation of organ boundary (GO:0010160);; Biological Process: response to far red light (GO:0010218);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: auxin efflux (GO:0010315);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Molecular Function: auxin efflux transmembrane transporter activity (GO:0010329);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: acropetal auxin transport (GO:0010541);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: carpel development (GO:0048440);; Biological Process: stamen development (GO:0048443);; Biological Process: lateral root development (GO:0048527);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: root hair elongation (GO:0048767);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; "	K05658|0.0|sbi:SORBI_07g023730|hypothetical protein	ABC transporter B family member 1 GN=T1J8.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Eragrostis tef (Teff) PE=3 SV=1	TPA: hypothetical protein ZEAMMB73_189648 [Zea mays]
comp223245_c1	0.003315001	1.979208006	up	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036655m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101754849 [Setaria italica]
comp232553_c0	0.008617634	1.871298344	up	[RTKL]	--	"Biological Process: immune system process (GO:0002376);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen-pistil interaction (GO:0009875);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular membrane organization (GO:0016044);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: cellular protein localization (GO:0034613);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: recognition of pollen (GO:0048544);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Receptor-like serine/threonine-protein kinase SD1-8 (Precursor) GN=T6K22.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Serine/threonine-protein kinase GN=Sb03g036630 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g036630 [Sorghum bicolor] 
comp249175_c0	0.000976767	1.980087104	up	--	--	"Biological Process: response to hormone stimulus (GO:0009725);; Molecular Function: transferase activity (GO:0016740);; Biological Process: developmental process (GO:0032502);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_264134 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_264134 [Zea mays]
comp209935_c1	0.005901163	-2.448541753	down	[G]	Carbohydrate transport and metabolism 	"Molecular Function: transporter activity (GO:0005215);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: iron ion transport (GO:0006826);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to fructose stimulus (GO:0009750);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: water channel activity (GO:0015250);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cysteine biosynthetic process (GO:0019344);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: xylan biosynthetic process (GO:0045492);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide transmembrane transport (GO:0080170);; "	--	Probable aquaporin PIP2-8 GN=OSJNBa0033P04.25 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb0012s010440 GN=Sb0012s010440 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein ZEAMMB73_486123 [Zea mays]
comp207936_c0	2.66E-08	2.997492034	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si031446m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775472 [Setaria italica]
comp208080_c0	4.94E-06	-2.808698293	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastid (GO:0009536);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si007219m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: 46 kDa FK506-binding nuclear protein-like [Setaria italica]
comp215551_c0	0.001841238	2.068517883	up	--	--	"Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: methionine biosynthetic process (GO:0009086);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: protoderm histogenesis (GO:0010068);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: cuticle development (GO:0042335);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: shoot development (GO:0048367);; Biological Process: organ formation (GO:0048645);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; Biological Process: cell wall organization (GO:0071555);; "	--	Probable serine/threonine-protein kinase NAK GN=NAK OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb04g032190 GN=Sb04g032190 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_04g032190 [Sorghum bicolor] 
comp217397_c0	2.02E-05	2.474710726	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si023458m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: universal stress protein A-like protein-like [Setaria italica]
comp221926_c1	0.002733689	-2.394843456	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: multicellular organismal development (GO:0007275);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Biological Process: phospholipid biosynthetic process (GO:0008654);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: unidimensional cell growth (GO:0009826);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: zeinoxanthin epsilon hydroxylase activity (GO:0009974);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Molecular Function: carotene beta-ring hydroxylase activity (GO:0010291);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xanthophyll biosynthetic process (GO:0016123);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: electron transport chain (GO:0022900);; Cellular Component: organelle membrane (GO:0031090);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Biological Process: trans-zeatin biosynthetic process (GO:0033466);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Cellular Component: membrane part (GO:0044425);; Biological Process: gibberellin catabolic process (GO:0045487);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: regulation of biological process (GO:0050789);; "	--	Secologanin synthase GN=CYP72A1 OS=Catharanthus roseus (Madagascar periwinkle) PE=2 SV=1	Cytochrome P450 monooxygenase CYP72A5 (Fragment) OS=Zea mays (Maize) PE=2 SV=1	TPA: putative cytochrome P450 superfamily protein [Zea mays]
comp205793_c0	5.68E-06	2.764227447	up	--	--	--	--	--	--	--
comp203556_c0	0.004369115	-1.959651361	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: binding (GO:0005488);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	F-box domain containing protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101771378 [Setaria italica]
comp222118_c0	1.99E-06	2.635490085	up	[E]	Amino acid transport and metabolism 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425);; Molecular Function: copper ion binding (GO:0005507);; Biological Process: tryptophan metabolic process (GO:0006568);; Biological Process: metabolic process (GO:0008152);; Cellular Component: chloroplast stroma (GO:0009570);; "	K01609|0.0|osa:4346529|Os09g0255400	Indole-3-glycerol phosphate synthase, chloroplastic (Precursor) GN=At2g04400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	cDNA clone:J023092E01, full insert sequence GN=OSJNBb0066C12.38-1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os09g0255400 [Oryza sativa Japonica Group] 
comp213023_c0	0.000134628	2.94719108	up	--	--	--	--	--	Uncharacterized protein GN=PGSC0003DMG400030423 OS=Solanum tuberosum (Potato) PE=4 SV=1	--
comp219033_c0	2.27E-09	3.208146849	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: osmosensory signaling pathway (GO:0007231);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: aerobic respiration (GO:0009060);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: seed germination (GO:0009845);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to nitrate (GO:0010167);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Molecular Function: NAD(P)H oxidase activity (GO:0016174);; Molecular Function: superoxide-generating NADPH oxidase activity (GO:0016175);; Biological Process: protein desumoylation (GO:0016926);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to ATP (GO:0033198);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Respiratory burst oxidase homolog protein B GN=RBOHB OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100381459 [Zea mays] 
comp213635_c0	6.40E-08	2.914065038	up	--	--	--	--	Extensin (Precursor) GN=HRGPNT3 OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g003470 [Sorghum bicolor] 
comp128226_c0	9.69E-05	-3.107721456	down	--	--	"Biological Process: immune system process (GO:0002376);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: response to organic substance (GO:0010033);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: respiratory burst (GO:0045730);; Cellular Component: apoplast (GO:0048046);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: organic substance transport (GO:0071702);; "	--	Peroxidase 56 (Precursor) GN=F8M21_70 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si020695m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: peroxidase 1-like [Setaria italica]
comp220196_c0	6.38E-05	2.852675695	up	--	--	"Biological Process: response to stimulus (GO:0050896);; "	--	Ethylene-responsive transcription factor ERF109 GN=ERF109 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os02g0764700 [Oryza sativa Japonica Group] 
comp231321_c0	0.006880554	2.299451357	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: leaf senescence (GO:0010150);; "	--	NAC transcription factor NAM-B2 GN=NAM-B2 OS=Triticum durum (Durum wheat) PE=2 SV=1	Uncharacterized protein GN=Si032676m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: NAC transcription factor NAM-2-like [Setaria italica]
comp235315_c0	0	5.324901478	up	[Z]	Cytoskeleton 	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: protein binding (GO:0005515);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: microtubule (GO:0005874);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: GTP catabolic process (GO:0006184);; Biological Process: microtubule-based process (GO:0007017);; Biological Process: microtubule-based movement (GO:0007018);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to salt stress (GO:0009651);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Biological Process: cell growth (GO:0016049);; Cellular Component: tubulin complex (GO:0045298);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: protein polymerization (GO:0051258);; Biological Process: cellular response to gravity (GO:0071258);; "	K07374|0.0|rcu:RCOM_0855220|tubulin alpha chain, putative	Tubulin alpha-2 chain GN=TUBA2 OS=Pelvetia fastigiata PE=2 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp133214_c0	3.89E-05	2.567949832	up	[K]	Transcription 	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: circadian rhythm (GO:0007623);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to light stimulus (GO:0009416);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	--	GATA transcription factor 2 GN=GATA2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	GATA zinc finger family protein OS=Zea mays (Maize) PE=2 SV=1	GATA zinc finger family protein [Zea mays] 
comp234180_c0	0.001557045	1.957642181	up	[R]	General function prediction only 	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Stackhouse genomic scaffold, scaffold_183 GN=CHC_T00003266001 OS=Chondrus crispus (Carragheen moss) PE=4 SV=1	pacC [Coniothyrium minitans]
comp213519_c0	0.002857604	1.880808393	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	Protein LURP-one-related 15 GN=At5g01750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp178378_c0	2.19E-07	4.849635369	up	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: tissue development (GO:0009888);; Biological Process: cell growth (GO:0016049);; Biological Process: root development (GO:0048364);; Biological Process: cell development (GO:0048468);; Biological Process: response to stimulus (GO:0050896);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein OS=Glycine max (Soybean) PE=4 SV=2	PREDICTED: leucine-rich repeat extensin-like protein 4-like [Glycine max]
comp215573_c0	1.64E-07	3.301104051	up	--	--	--	--	--	--	--
comp205048_c0	1.85E-10	4.810850234	up	--	--	--	--	--	--	--
comp198215_c0	5.00E-05	2.363442197	up	[TZDR]	--	"Molecular Function: copper ion binding (GO:0005507);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein folding (GO:0006457);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: calcium-mediated signaling (GO:0019722);; Molecular Function: enzyme regulator activity (GO:0030234);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: regulation of hydrolase activity (GO:0051336);; Biological Process: organelle localization (GO:0051640);; Biological Process: response to karrikin (GO:0080167);; "	--	Calcium-binding protein PBP1 GN=F24B18.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb07g027990 GN=Sb07g027990 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g027990 [Sorghum bicolor] 
comp211513_c0	7.11E-08	-3.41612553	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si031328m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein app1-like [Setaria italica]
comp216710_c0	3.46E-05	3.432815297	up	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; "	--	--	--	Pbs2-type MAP kinase kinase [Alternaria alternata] 
comp173274_c0	0.005092265	1.857672041	up	--	--	"Cellular Component: cell wall (GO:0005618);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Defensin-like protein 7 (Precursor) GN=F22D22 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein GN=Si019959m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: defensin-like protein-like [Setaria italica]
comp215559_c2	4.61E-05	2.297084169	up	--	--	"Biological Process: cellular process (GO:0009987);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; "	--	Classical arabinogalactan protein 4 (Precursor) GN=AGP4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si015786m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcriptional repressor scratch 1-like [Setaria italica]
comp203035_c0	0.004523788	1.80160099	up	--	--	"Biological Process: response to nematode (GO:0009624);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si030385m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: UDP-galactose transporter 2-like [Setaria italica]
comp205793_c1	2.29E-06	2.627733338	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Phytosulfokine-beta (Precursor) GN=PSK5 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative uncharacterized protein Sb08g002990 GN=Sb08g002990 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g002990 [Sorghum bicolor] 
comp213649_c0	7.09E-06	2.516561464	up	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; "	K10712|1e-148|sbi:SORBI_08g022140|hypothetical protein	Formin-like protein 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si022810m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: 2-aminoethanethiol dioxygenase-like [Setaria italica]
comp170106_c0	1.29E-07	2.89895421	up	[M]	Cell wall/membrane/envelope biogenesis 	--	K14325|7e-09|osa:4325394|Os01g0959000	Serine/arginine-rich splicing factor 33 GN=F7A10.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein GN=AURANDRAFT_70520 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70520 [Aureococcus anophagefferens]
comp227233_c1	7.22E-06	2.90676596	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cyanelle (GO:0009842);; Molecular Function: rRNA binding (GO:0019843);; Cellular Component: nucleomorph (GO:0033009);; "	--	Cyanelle 30S ribosomal protein S11 GN=rps11 OS=Cyanophora paradoxa PE=3 SV=1	30S ribosomal protein S11 GN=rps11 OS=uncultured Pelagomonas PE=3 SV=1	ribosomal protein S11 [Cyanophora paradoxa] 
comp227200_c0	0.009041204	-1.834919614	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: pollen-pistil interaction (GO:0009875);; Cellular Component: membrane (GO:0016020);; Cellular Component: cell part (GO:0044464);; Biological Process: recognition of pollen (GO:0048544);; "	--	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (Precursor) GN=At2g19130 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Serine/threonine-protein kinase GN=BRADI3G27197 OS=Brachypodium distachyon (Purple false brome) PE=3 SV=1	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Setaria italica]
comp219321_c0	0.007578075	1.765728315	up	--	--	--	--	--	Uncharacterized protein GN=Si003563m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g011790 [Sorghum bicolor] 
comp230360_c0	2.47E-09	3.192822291	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Cellular Component: proteasome complex (GO:0000502);; Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: thylakoid (GO:0009579);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: plastid organization (GO:0009657);; Cellular Component: membrane (GO:0016020);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: ATPase activity (GO:0016887);; Molecular Function: nucleoside-triphosphatase activity (GO:0017111);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: protein catabolic process (GO:0030163);; Biological Process: regulation of cellular metabolic process (GO:0031323);; Cellular Component: organelle envelope (GO:0031967);; Biological Process: cellular catabolic process (GO:0044248);; Biological Process: cellular protein metabolic process (GO:0044267);; Biological Process: small molecule metabolic process (GO:0044281);; Cellular Component: chloroplast part (GO:0044434);; Biological Process: oxidation-reduction process (GO:0055114);; "	K08900|0.0|sbi:SORBI_09g030330|hypothetical protein	ATP-dependent zinc metalloprotease FTSH 5, mitochondrial (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Uncharacterized protein GN=Si024773m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: mitochondrial chaperone BCS1-like [Setaria italica]
comp225012_c0	5.28E-07	3.350576202	up	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	--	Retrotransposon protein, putative, Ty1-copia subclass GN=LOC_Os12g12450 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
comp175485_c0	5.46E-13	3.861670924	up	--	--	--	--	--	--	--
comp225961_c1	0	-8.793440432	down	--	--	--	--	--	--	--
comp221878_c0	6.92E-06	-2.610488245	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Molecular Function: glucuronoxylan 4-O-methyltransferase activity (GO:0030775);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	Glucuronoxylan 4-O-methyltransferase 3 GN=GXM3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si010707m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Setaria italica]
comp219209_c0	0.004738876	1.879404649	up	--	--	"Biological Process: immune system process (GO:0002376);; Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: nucleus (GO:0005634);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: response to organic substance (GO:0010033);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: heme binding (GO:0020037);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: respiratory burst (GO:0045730);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: developmental growth (GO:0048589);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to hypoxia (GO:0071456);; "	--	Peroxidase 2 (Precursor) GN=YUP8H12.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=OB01G42340 OS=Oryza brachyantha PE=3 SV=1	hypothetical protein OsI_04022 [Oryza sativa Indica Group]
comp216676_c0	0.000190624	3.651027973	up	--	--	--	--	--	--	--
comp233273_c1	2.65E-06	2.759172727	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to stress (GO:0006950);; Biological Process: response to abiotic stimulus (GO:0009628);; "	--	Zinc finger protein ZAT1 GN=ZAT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp219547_c0	9.84E-05	2.854316591	up	--	--	--	--	--	Putative uncharacterized protein Sb03g011790 GN=Sb03g011790 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g011790 [Sorghum bicolor] 
comp222491_c1	0.001044648	2.099990932	up	--	--	"Biological Process: response to chitin (GO:0010200);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cell part (GO:0044464);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	LysM domain receptor-like kinase 4 (Precursor) GN=LYK4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026049m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein LYK5-like [Setaria italica]
comp176167_c0	0.007161356	-2.498763918	down	--	--	--	--	--	Putative uncharacterized protein GN=OsI_13988 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	hypothetical protein OsI_13988 [Oryza sativa Indica Group]
comp214872_c0	9.58E-06	2.446784665	up	--	--	--	--	WRKY transcription factor 55 GN=WRKY55 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si002121m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 4-like [Setaria italica]
comp319323_c0	0.001703665	-2.385197306	down	--	--	"Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: cellular metabolic process (GO:0044237);; Cellular Component: cell periphery (GO:0071944);; "	--	Cysteine-rich repeat secretory protein 12 (Precursor) GN=CRRSP12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Putative uncharacterized protein Sb04g028720 GN=Sb04g028720 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	secretory protein-like protein, partial [Zea mays]
comp221819_c0	1.60E-05	-3.32765436	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to inorganic substance (GO:0010035);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: monocarboxylic acid metabolic process (GO:0032787);; Biological Process: cellular response to stress (GO:0033554);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; Biological Process: benzene-containing compound metabolic process (GO:0042537);; Biological Process: cellular response to abiotic stimulus (GO:0071214);; "	--	Cyanidin 3-O-rutinoside 5-O-glucosyltransferase GN=5GT OS=Iris hollandica (Dutch iris) PE=1 SV=1	Uncharacterized protein GN=Si012087m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cyanidin 3-O-rutinoside 5-O-glucosyltransferase-like [Setaria italica]
comp231359_c0	0.003508812	-1.990814927	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: pollen development (GO:0009555);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to nitrate (GO:0010167);; Biological Process: suberin biosynthetic process (GO:0010345);; Biological Process: nitrate transport (GO:0015706);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: O-acetyltransferase activity (GO:0016413);; Biological Process: cellular nitrogen compound biosynthetic process (GO:0044271);; Molecular Function: anthranilate N-benzoyltransferase activity (GO:0047672);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; Molecular Function: O-hydroxycinnamoyltransferase activity (GO:0050737);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: cell wall pectin biosynthetic process (GO:0052325);; "	--	Omega-hydroxypalmitate O-feruloyl transferase GN=MEE6.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Transferase OS=Zea mays (Maize) PE=2 SV=1	transferase [Zea mays] 
comp223745_c0	0.000363956	-2.271126826	down	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: immune system process (GO:0002376);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to organic substance (GO:0010033);; Biological Process: cellular component organization (GO:0016043);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: system development (GO:0048731);; Biological Process: response to other organism (GO:0051707);; Biological Process: organic substance transport (GO:0071702);; "	--	E3 ubiquitin-protein ligase PUB23 GN=PUB23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_312102 OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100280112 [Zea mays] 
comp221157_c0	0.00627126	-1.856828837	down	--	--	"Biological Process: response to reactive oxygen species (GO:0000302);; Cellular Component: chromatin (GO:0000785);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: DNA-dependent DNA replication (GO:0006261);; Biological Process: DNA methylation (GO:0006306);; Biological Process: chromatin silencing (GO:0006342);; Biological Process: polyamine catabolic process (GO:0006598);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: high-affinity iron ion transport (GO:0006827);; Biological Process: cellular copper ion homeostasis (GO:0006878);; Biological Process: Golgi organization (GO:0007030);; Biological Process: aging (GO:0007568);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: chloroplast inner membrane (GO:0009706);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: leaf morphogenesis (GO:0009965);; Cellular Component: magnesium chelatase complex (GO:0010007);; Biological Process: specification of floral organ identity (GO:0010093);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: phosphatidylinositol-5-phosphate binding (GO:0010314);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: copper chaperone activity (GO:0016531);; Biological Process: histone phosphorylation (GO:0016572);; Molecular Function: magnesium chelatase activity (GO:0016851);; Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: gene silencing by RNA (GO:0031047);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: histone H3-K9 methylation (GO:0051567);; Biological Process: histone H3-K4 methylation (GO:0051568);; "	--	Copper transport protein ATX1 GN=ATX1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si014457m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101786238 isoform X1 [Setaria italica]
comp222140_c0	1.48E-05	2.967550568	up	--	--	"Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; "	--	--	Retrotransposon protein, putative, unclassified, expressed GN=LOC_Os12g24050 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774267 [Setaria italica]
comp165658_c0	0.001042708	-2.895371041	down	[P]	Inorganic ion transport and metabolism 	"Biological Process: establishment of planar polarity (GO:0001736);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: iron ion transmembrane transporter activity (GO:0005381);; Molecular Function: manganese ion transmembrane transporter activity (GO:0005384);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: lipid transport (GO:0006869);; Biological Process: cellular iron ion homeostasis (GO:0006879);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to heat (GO:0009408);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway (GO:0009871);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: response to aluminum ion (GO:0010044);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: lithium ion transport (GO:0010351);; Molecular Function: aluminum ion transmembrane transporter activity (GO:0015083);; Molecular Function: cadmium ion transmembrane transporter activity (GO:0015086);; Molecular Function: inorganic anion transmembrane transporter activity (GO:0015103);; Biological Process: aluminum cation transport (GO:0015690);; Biological Process: lead ion transport (GO:0015692);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: iron ion transmembrane transport (GO:0034755);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: cotyledon development (GO:0048825);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Biological Process: manganese ion homeostasis (GO:0055071);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: cadmium ion transmembrane transport (GO:0070574);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: manganese ion transmembrane transport (GO:0071421);; Biological Process: positive regulation of reactive oxygen species metabolic process (GO:2000379);; "	--	Metal transporter Nramp5 GN=OJ1057_E05.110 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb02g007870 GN=Sb02g007870 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: metal transporter Nramp5-like [Setaria italica]
comp222712_c0	0.001735536	-2.057880062	down	[E]	Amino acid transport and metabolism 	"Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: cysteine biosynthetic process from serine (GO:0006535);; Biological Process: signal transduction (GO:0007165);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: serine O-acetyltransferase activity (GO:0009001);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cellular response to sulfate starvation (GO:0009970);; Biological Process: response to organic substance (GO:0010033);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: cellular response to organic substance (GO:0071310);; "	K00640|1e-115|sbi:SORBI_01g044050|hypothetical protein	Probable serine acetyltransferase 4 GN=SAT4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: probable serine acetyltransferase 4-like [Setaria italica]
comp219224_c1	6.07E-08	3.185599962	up	--	--	--	--	Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata (Mung bean) PE=1 SV=3	Uncharacterized protein OS=Glycine max (Soybean) PE=4 SV=1	hypothetical protein OsI_06126 [Oryza sativa Indica Group]
comp227576_c0	0.001129022	2.05186917	up	--	--	--	--	--	Uncharacterized protein GN=Si035681m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101771722 [Setaria italica]
comp220767_c0	0.004119863	2.327134599	up	[RTKL]	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: anion transport (GO:0006820);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: tissue development (GO:0009888);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: seed development (GO:0048316);; Biological Process: organ development (GO:0048513);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: recognition of pollen (GO:0048544);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; Biological Process: organic substance transport (GO:0071702);; Biological Process: nitrogen compound transport (GO:0071705);; "	--	Putative receptor protein kinase ZmPK1 (Precursor) GN=PK1 OS=Zea mays (Maize) PE=2 SV=2	S-receptor kinase-like GN=P0047F09.1-2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	S-receptor kinase-like [Oryza sativa Japonica Group] 
comp221717_c5	8.48E-05	3.192395742	up	[T]	Signal transduction mechanisms 	"Molecular Function: two-component sensor activity (GO:0000155);; Molecular Function: two-component response regulator activity (GO:0000156);; Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160);; Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: osmosensor activity (GO:0005034);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: osmosensory signaling pathway (GO:0007231);; Biological Process: sulfate transport (GO:0008272);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to insect (GO:0009625);; Biological Process: response to toxin (GO:0009636);; Biological Process: response to salt stress (GO:0009651);; Biological Process: cytokinin metabolic process (GO:0009690);; Biological Process: detection of ethylene stimulus (GO:0009727);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: cytokinin mediated signaling pathway (GO:0009736);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Molecular Function: transmembrane histidine kinase cytokinin receptor activity (GO:0009885);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: embryonic root morphogenesis (GO:0010086);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: negative regulation of ethylene mediated signaling pathway (GO:0010105);; Biological Process: leaf senescence (GO:0010150);; Biological Process: regulation of chlorophyll catabolic process (GO:0010271);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: cytokine binding (GO:0019955);; Biological Process: signal transduction by phosphorylation (GO:0023014);; Biological Process: regulation of anthocyanin metabolic process (GO:0031537);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: negative regulation of iron ion transport (GO:0034757);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: protein histidine kinase binding (GO:0043424);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Molecular Function: ethylene binding (GO:0051740);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; Biological Process: cellular response to cold (GO:0070417);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to sucrose stimulus (GO:0071329);; Biological Process: cellular response to nitric oxide (GO:0071732);; Biological Process: secondary growth (GO:0080117);; Biological Process: regulation of stomatal closure (GO:0090333);; "	--	Histidine kinase 5 GN=MAJ23.80 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein (Fragment) GN=GUITHDRAFT_45786 OS=Guillardia theta CCMP2712 PE=4 SV=1	histidine kinase [Cochliobolus heterostrophus]
comp228573_c0	3.89E-06	2.541976036	up	--	--	"Molecular Function: calcium ion binding (GO:0005509);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb07g028090 GN=Sb07g028090 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g028090 [Sorghum bicolor] 
comp132969_c0	0.005717433	-2.637038444	down	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Biological Process: lipid metabolic process (GO:0006629);; "	--	--	Predicted protein (Fragment) OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	TPA: hypothetical protein ZEAMMB73_275021 [Zea mays]
comp227913_c0	4.78E-05	-2.537605091	down	--	--	"Molecular Function: sulfotransferase activity (GO:0008146);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si035289m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101760819 isoform X1 [Setaria italica] 
comp229880_c0	0.00032018	2.181140069	up	--	--	--	--	--	--	--
comp199233_c0	0.000797157	3.209973005	up	--	--	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: ATP:ADP antiporter activity (GO:0005471);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: generation of precursor metabolites and energy (GO:0006091);; Biological Process: mitochondrial transport (GO:0006839);; Biological Process: systemic acquired resistance (GO:0009627);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: organic anion transport (GO:0015711);; Biological Process: nucleoside transport (GO:0015858);; Biological Process: purine ribonucleotide transport (GO:0015868);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: anther development (GO:0048653);; Biological Process: adenine nucleotide transport (GO:0051503);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: organic substance metabolic process (GO:0071704);; "	K05863|1e-107|cme:CMN084C|ADP/ATP translocase	ADP,ATP carrier protein OS=Parachlorella kessleri (Green alga) PE=3 SV=1	ADP/ATP translocase GN=CYME_CMN084C OS=Cyanidioschyzon merolae strain 10D PE=3 SV=1	ADP/ATP translocase [Cyanidioschyzon merolae strain 10D]
comp165189_c0	1.82E-07	3.361887706	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Non-specific lipid-transfer protein 2 (Precursor) GN=LTP-2 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Nonspecific lipid-transfer protein OS=Zea mays (Maize) PE=4 SV=1	LOC100281913 precursor [Zea mays] 
comp223053_c0	8.44E-06	2.515411735	up	--	--	"Biological Process: immune system process (GO:0002376);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular membrane organization (GO:0016044);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: recognition of pollen (GO:0048544);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	G-type lectin S-receptor-like serine/threonine-protein kinase B120 (Precursor) GN=B120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Serine/threonine-protein kinase GN=Si028894m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	TPA: putative S-locus receptor-like protein kinase family protein [Zea mays]
comp127973_c0	0.000806659	-4.002673033	down	--	--	"Cellular Component: plastid (GO:0009536);; "	--	--	Uncharacterized protein GN=Si028587m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: serine/arginine repetitive matrix protein 1-like [Setaria italica]
comp234349_c0	0.003811186	1.833501945	up	[C]	Energy production and conversion 	"Cellular Component: extracellular space (GO:0005615);; Cellular Component: vacuole (GO:0005773);; Molecular Function: primary amine oxidase activity (GO:0008131);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Biological Process: cytokinin metabolic process (GO:0009690);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cytokinin catabolic process (GO:0009823);; Biological Process: xylem development (GO:0010089);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cytokinin dehydrogenase activity (GO:0019139);; Biological Process: electron transport chain (GO:0022900);; Biological Process: secretion by cell (GO:0032940);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: meristem development (GO:0048507);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; "	--	Cytokinin dehydrogenase 4 (Precursor) GN=B1150F11.25 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=OB01G52620 OS=Oryza brachyantha PE=4 SV=1	PREDICTED: cytokinin dehydrogenase 4-like [Brachypodium distachyon]
comp207366_c1	0.000877908	3.4408794	up	[S]	Function unknown 	"Cellular Component: membrane (GO:0016020);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Putative uncharacterized protein GN=VOLCADRAFT_104492 OS=Volvox carteri (Green alga) PE=4 SV=1	hypothetical protein VOLCADRAFT_104492 [Volvox carteri f. nagariensis] 
comp229120_c1	0.003469835	2.092616732	up	--	--	"Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: NADH dehydrogenase complex (plastoquinone) assembly (GO:0010258);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Molecular Function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor (GO:0016655);; Molecular Function: quinone binding (GO:0048038);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb06g023900 GN=Sb06g023900 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g023900 [Sorghum bicolor] 
comp196522_c0	1.06E-07	2.900809344	up	--	--	--	--	--	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101780959 [Setaria italica]
comp226068_c0	4.90E-06	3.405836358	up	--	--	--	--	Classical arabinogalactan protein 9 (Precursor) GN=AGP9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Predicted protein (Fragment) OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp169697_c0	0.00031223	2.130382953	up	[G]	Carbohydrate transport and metabolism 	"Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: intracellular organelle (GO:0043229);; "	--	Glycine-rich cell wall structural protein 1 (Precursor) GN=GRP-1 OS=Petunia hybrida (Petunia) PE=1 SV=1	Uncharacterized protein (Fragment) GN=ZEAMMB73_817356 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_817356, partial [Zea mays]
comp199552_c0	2.22E-06	2.661595033	up	--	--	"Molecular Function: copper ion binding (GO:0005507);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: anchored to membrane (GO:0031225);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; "	--	Chemocyanin (Precursor) OS=Lilium longiflorum (Trumpet lily) PE=1 SV=1	Uncharacterized protein GN=Si038013m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: chemocyanin-like [Setaria italica]
comp133232_c0	8.25E-06	-4.640166537	down	--	--	"Biological Process: very long-chain fatty acid metabolic process (GO:0000038);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: phosphatidylglycerol biosynthetic process (GO:0006655);; Biological Process: pattern specification process (GO:0007389);; Biological Process: metabolic process (GO:0008152);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: flower development (GO:0009908);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Biological Process: cutin biosynthetic process (GO:0010143);; Biological Process: suberin biosynthetic process (GO:0010345);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; Molecular Function: phosphatase activity (GO:0016791);; Biological Process: cuticle development (GO:0042335);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: cell wall organization (GO:0071555);; Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity (GO:0090447);; "	--	Glycerol-3-phosphate 2-O-acyltransferase 6 GN=GPAT6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035268m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Setaria italica]
comp229571_c0	6.58E-06	2.566323638	up	[I]	Lipid transport and metabolism 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: unsaturated fatty acid biosynthetic process (GO:0006636);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);; Molecular Function: delta12-fatty acid dehydrogenase activity (GO:0016720);; Cellular Component: chloroplast membrane (GO:0031969);; Molecular Function: omega-3 fatty acid desaturase activity (GO:0042389);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	K10257|0.0|sbi:SORBI_01g038500|hypothetical protein	Omega-3 fatty acid desaturase, chloroplastic (Precursor) GN=FAD7 OS=Glycine max (Soybean) PE=2 SV=1	Uncharacterized protein GN=Si035778m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like isoform X2 [Setaria italica]
comp226020_c0	0.008441296	-1.90148545	down	--	--	--	--	--	--	--
comp214069_c0	1.07E-07	3.215916402	up	--	--	--	--	--	Putative uncharacterized protein Sb03g010460 GN=Sb03g010460 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g010460 [Sorghum bicolor] 
comp214956_c1	0.000120017	-2.668271116	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: tropism (GO:0009606);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: response to cadmium ion (GO:0046686);; "	--	Chaperone protein dnaJ 11, chloroplastic (Precursor) GN=T19K4.170 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si007580m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Setaria italica]
comp224142_c0	6.84E-05	2.258010295	up	[T]	Signal transduction mechanisms 	"Biological Process: response to stress (GO:0006950);; "	--	Universal stress protein A-like protein GN=At3g01520 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Universal stress protein A-like protein GN=TRIUR3_12898 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	Universal stress protein A-like protein [Triticum urartu]
comp172344_c0	0.000339049	2.093991887	up	[RTKL]	--	"Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: amino acid transport (GO:0006865);; Biological Process: methionine biosynthetic process (GO:0009086);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: protoderm histogenesis (GO:0010068);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: cuticle development (GO:0042335);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: organ formation (GO:0048645);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; "	--	Serine/threonine-protein kinase At5g01020 GN=At5g01020 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036128m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: serine/threonine-protein kinase At5g01020-like [Setaria italica]
comp219769_c0	0.00168448	-2.184358447	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: rRNA processing (GO:0006364);; Biological Process: regulation of translation (GO:0006417);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: seed germination (GO:0009845);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: chloroplast relocation (GO:0009902);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: radial pattern formation (GO:0009956);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: thylakoid membrane organization (GO:0010027);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: regulation of root meristem growth (GO:0010082);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: abaxial cell fate specification (GO:0010158);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: inflorescence development (GO:0010229);; Biological Process: regulation of chlorophyll biosynthetic process (GO:0010380);; Biological Process: positive regulation of organelle organization (GO:0010638);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: transcription from plastid promoter (GO:0042793);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: cellular response to cytokinin stimulus (GO:0071368);; Biological Process: integument development (GO:0080060);; Biological Process: regulation of seed growth (GO:0080113);; "	--	Myb family transcription factor APL GN=APL OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si030350m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: myb family transcription factor APL-like isoform X1 [Setaria italica] 
comp227419_c0	6.61E-05	2.298033794	up	--	--	"Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	--	Uncharacterized protein GN=Si007014m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101771357 [Setaria italica]
comp253566_c0	0.000382711	2.469859917	up	--	--	--	--	--	--	--
comp219538_c0	3.93E-05	-2.50648931	down	[C]	Energy production and conversion 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: vitamin E biosynthetic process (GO:0010189);; Biological Process: photosynthesis (GO:0015979);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (GO:0016628);; Biological Process: cysteine biosynthetic process (GO:0019344);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: geranylgeranyl diphosphate metabolic process (GO:0033385);; Biological Process: phytyl diphosphate biosynthetic process (GO:0033521);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: geranylgeranyl reductase activity (GO:0045550);; Biological Process: oxidation-reduction process (GO:0055114);; Cellular Component: cell periphery (GO:0071944);; "	K10960|0.0|sbi:SORBI_03g010340|hypothetical protein	Geranylgeranyl diphosphate reductase, chloroplastic (Precursor) GN=CHLP OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1	Putative uncharacterized protein Sb03g010340 GN=Sb03g010340 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g010340 [Sorghum bicolor] 
comp218956_c1	2.95E-05	2.358205024	up	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: immune system process (GO:0002376);; Molecular Function: catalytic activity (GO:0003824);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: RNA processing (GO:0006396);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: cellular response to organic substance (GO:0071310);; Biological Process: organic substance transport (GO:0071702);; Biological Process: cellular component organization or biogenesis (GO:0071840);; "	--	U-box domain-containing protein 21 GN=PUB21 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si035714m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 21-like [Setaria italica]
comp209019_c0	0.009488539	-1.764611532	down	[G]	Carbohydrate transport and metabolism 	"Biological Process: maltose metabolic process (GO:0000023);; Molecular Function: UTP:glucose-1-phosphate uridylyltransferase activity (GO:0003983);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose metabolic process (GO:0005985);; Biological Process: metabolic process (GO:0008152);; Biological Process: pollen development (GO:0009555);; Biological Process: response to salt stress (GO:0009651);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: callose deposition in cell wall (GO:0052543);; Cellular Component: pollen tube (GO:0090406);; "	K00963|0.0|osa:4328091|Os02g0117700	UTP--glucose-1-phosphate uridylyltransferase GN=UGPA OS=Musa acuminata (Banana) PE=2 SV=1	Uncharacterized protein (Fragment) OS=Phleum pratense (Common timothy) PE=2 SV=1	hypothetical protein ZEAMMB73_416905 [Zea mays]
comp221972_c0	0.000627497	2.409746454	up	[P]	Inorganic ion transport and metabolism 	"Biological Process: cellular process (GO:0009987);; "	--	DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=THAOC_02764 OS=Thalassiosira oceanica (Marine diatom) PE=4 SV=1	hypothetical protein THAOC_02764 [Thalassiosira oceanica]
comp218300_c0	0.003493268	-1.913512819	down	--	--	--	--	--	Uncharacterized protein GN=Si008634m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762967 [Setaria italica]
comp233956_c0	0.000777057	-2.083660094	down	--	--	"Biological Process: regulation of neurotransmitter levels (GO:0001505);; Molecular Function: catalytic activity (GO:0003824);; Molecular Function: histamine receptor activity (GO:0004969);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Biological Process: G-protein coupled receptor signaling pathway (GO:0007186);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; Cellular Component: intracellular organelle part (GO:0044446);; Cellular Component: plant extracellular matrix (GO:0048196);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: organic substance metabolic process (GO:0071704);; Cellular Component: cell periphery (GO:0071944);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si006279m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101759057 [Setaria italica]
comp124364_c0	6.26E-06	-3.210611323	down	--	--	--	--	--	Putative uncharacterized protein GN=VOLCADRAFT_93343 OS=Volvox carteri (Green alga) PE=4 SV=1	hypothetical protein VOLCADRAFT_93343 [Volvox carteri f. nagariensis] 
comp166161_c0	0.00877059	-3.600875188	down	[F]	Nucleotide transport and metabolism 	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Biological Process: RNA methylation (GO:0001510);; Molecular Function: IMP dehydrogenase activity (GO:0003938);; Cellular Component: cytosol (GO:0005829);; Biological Process: GMP biosynthetic process (GO:0006177);; Biological Process: protein targeting to mitochondrion (GO:0006626);; Biological Process: methionine biosynthetic process (GO:0009086);; Molecular Function: adenyl nucleotide binding (GO:0030554);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00088|2e-37|zma:100501392|hypothetical protein LOC100501392	"Inosine-5'-monophosphate dehydrogenase 2 GN=At1g16350 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1"	Inosine-5'-monophosphate dehydrogenase GN=LOC_Os03g56800 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	TPA: hypothetical protein ZEAMMB73_131628 [Zea mays]
comp232518_c0	0.00125463	2.077224001	up	--	--	"Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: cell wall (GO:0005618);; Biological Process: amino acid transport (GO:0006865);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: sterol biosynthetic process (GO:0016126);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; "	--	Pectinesterase 41 (Precursor) GN=T14P8.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Pectinesterase GN=Sb09g017920 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_09g017920 [Sorghum bicolor] 
comp210564_c0	5.59E-05	-3.428557831	down	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: pollen development (GO:0009555);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: cell growth (GO:0016049);; Biological Process: carpel morphogenesis (GO:0048445);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: root hair initiation (GO:0048766);; "	--	Transcription factor bHLH54 GN=T22C5.19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Helix-loop-helix DNA-binding domain containing protein [Oryza sativa Japonica Group] 
comp196452_c0	0.003696441	-1.917990647	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Cellular Component: cell wall (GO:0005618);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: water transport (GO:0006833);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: xylem development (GO:0010089);; Biological Process: positive regulation of abscisic acid biosynthetic process (GO:0010116);; Biological Process: seed coat development (GO:0010214);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Molecular Function: cellulose synthase (GDP-forming) activity (GO:0016761);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|1e-175|sbi:SORBI_03g034680|hypothetical protein	Cellulose synthase A catalytic subunit 4 [UDP-forming] GN=P0046E05.4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	hypothetical protein OsJ_03463 [Oryza sativa Japonica Group]
comp207136_c0	0.00036687	2.085569651	up	--	--	"Cellular Component: membrane (GO:0016020);; "	--	Splicing factor U2af large subunit A GN=U2AF65A OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si007541m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770827 [Setaria italica]
comp231831_c0	0.003629797	-2.135187201	down	[E]	Amino acid transport and metabolism 	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Biological Process: plant-type cell wall organization (GO:0009664);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: high affinity oligopeptide transporter activity (GO:0015334);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: metal ion transport (GO:0030001);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: dipeptide transporter activity (GO:0042936);; Molecular Function: tripeptide transporter activity (GO:0042937);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: tripeptide transport (GO:0042939);; Biological Process: response to leucine (GO:0043201);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: intracellular transport (GO:0046907);; Biological Process: response to histidine (GO:0080052);; Biological Process: response to phenylalanine (GO:0080053);; Molecular Function: low affinity nitrate transmembrane transporter activity (GO:0080054);; Biological Process: low affinity nitrate transport (GO:0080055);; "	--	Probable nitrite transporter At1g68570 GN=At1g68570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb10g009530 GN=Sb10g009530 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g009530 [Sorghum bicolor] 
comp190310_c0	2.64E-08	-4.79283712	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: ADP binding (GO:0043531);; "	--	Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Putative uncharacterized protein GN=OsI_28706 OS=Oryza sativa subsp. indica (Rice) PE=4 SV=1	hypothetical protein OsI_28706 [Oryza sativa Indica Group]
comp215945_c0	5.71E-06	2.503287757	up	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: detection of calcium ion (GO:0005513);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: cellular potassium ion homeostasis (GO:0030007);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: hypotonic salinity response (GO:0042539);; Biological Process: regulation of potassium ion transport (GO:0043266);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall organization (GO:0071555);; Biological Process: regulation of ion homeostasis (GO:2000021);; "	--	Calcineurin B-like protein 4 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si023239m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: calcineurin B-like protein 4-like [Setaria italica]
comp233109_c5	3.62E-08	2.939964003	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: negative regulation of ethylene mediated signaling pathway (GO:0010105);; Biological Process: response to chitin (GO:0010200);; Biological Process: organ senescence (GO:0010260);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: proline transport (GO:0015824);; Cellular Component: nuclear body (GO:0016604);; Biological Process: response to anoxia (GO:0034059);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Biological Process: detection of hypoxia (GO:0070483);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: cellular response to freezing (GO:0071497);; "	--	Ethylene-responsive transcription factor RAP2-12 GN=T18A20.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si031079m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor RAP2-3-like [Setaria italica]
comp227900_c1	0.003960846	2.291439334	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: transporter activity (GO:0005215);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: chloroplast organization (GO:0009658);; Molecular Function: sigma factor activity (GO:0016987);; Biological Process: aromatic compound catabolic process (GO:0019439);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: pigment metabolic process (GO:0042440);; Biological Process: cellular protein complex assembly (GO:0043623);; Biological Process: cellular nitrogen compound catabolic process (GO:0044270);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: heterocycle catabolic process (GO:0046700);; Biological Process: cofactor metabolic process (GO:0051186);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: regulation of RNA biosynthetic process (GO:2001141);; "	--	UPF0051 protein ycf24 GN=ycf24 OS=Pyropia yezoensis (Red alga) PE=3 SV=1	Iron-sulfur cluster assembly protein GN=sufB OS=Volvox carteri (Green alga) PE=4 SV=1	iron-sulfur cluster assembly protein [Volvox carteri f. nagariensis] 
comp190609_c0	0.000578409	2.133591746	up	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: postreplication repair (GO:0006301);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: fatty acid beta-oxidation (GO:0006635);; Biological Process: phosphatidylinositol biosynthetic process (GO:0006661);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: UV protection (GO:0009650);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: endosperm development (GO:0009960);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to iron ion (GO:0010039);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: regulation of photomorphogenesis (GO:0010099);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cullin deneddylation (GO:0010388);; Biological Process: endosomal transport (GO:0016197);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: protein deubiquitination (GO:0016579);; Cellular Component: UBC13-MMS2 complex (GO:0031372);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: histone H2B ubiquitination (GO:0033523);; Biological Process: DNA endoreduplication (GO:0042023);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Biological Process: proteasome assembly (GO:0043248);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: regulation of transport (GO:0051049);; Biological Process: regulation of unidimensional cell growth (GO:0051510);; Biological Process: response to misfolded protein (GO:0051788);; "	K06689|1e-106|ath:AT1G64230|UBC28	Ubiquitin-conjugating enzyme E2 28 GN=F22C12.2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Musa acuminata subsp. malaccensis (Wild banana) PE=3 SV=1	hypothetical protein OsI_06649 [Oryza sativa Indica Group]
comp209691_c0	2.76E-07	3.253212944	up	--	--	--	--	--	Uncharacterized protein GN=Si022663m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp221823_c0	0.006805785	1.985606202	up	--	--	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: ATP:ADP antiporter activity (GO:0005471);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: generation of precursor metabolites and energy (GO:0006091);; Biological Process: cation transport (GO:0006812);; Biological Process: mitochondrial transport (GO:0006839);; Molecular Function: cation transmembrane transporter activity (GO:0008324);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: basic amino acid transmembrane transporter activity (GO:0015174);; Molecular Function: L-amino acid transmembrane transporter activity (GO:0015179);; Biological Process: organic anion transport (GO:0015711);; Biological Process: nucleoside transport (GO:0015858);; Biological Process: purine ribonucleotide transport (GO:0015868);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: anther development (GO:0048653);; Biological Process: adenine nucleotide transport (GO:0051503);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	ADP,ATP carrier protein 2, mitochondrial (Precursor) GN=ANT2 OS=Zea mays (Maize) PE=2 SV=2	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100274442 [Zea mays] 
comp218183_c0	0	5.546309745	up	--	--	--	--	Early nodulin-20 (Precursor) GN=ENOD20 OS=Medicago truncatula (Barrel medic) PE=3 SV=1	Putative uncharacterized protein Sb10g013040 GN=Sb10g013040 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g013040 [Sorghum bicolor] 
comp224942_c0	0.00036559	2.183928167	up	--	--	"Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: DNA repair (GO:0006281);; Biological Process: cell tip growth (GO:0009932);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: heat acclimation (GO:0010286);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: Golgi localization (GO:0051645);; Biological Process: mitochondrion localization (GO:0051646);; Biological Process: peroxisome localization (GO:0060151);; "	--	Probable calcium-binding protein CML49 GN=CML49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	EF hand family protein, expressed GN=LOC_Os12g04240 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	EF hand family protein, expressed [Oryza sativa Japonica Group]
comp227847_c0	0.001669819	1.918441611	up	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si010166m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101759402 [Setaria italica]
comp216020_c0	5.66E-05	-2.550060839	down	[S]	Function unknown 	"Biological Process: regionalization (GO:0003002);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: signal transduction (GO:0007165);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: lateral root morphogenesis (GO:0010102);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: pectin catabolic process (GO:0045490);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: embryonic meristem development (GO:0048508);; Biological Process: anther development (GO:0048653);; Biological Process: response to stimulus (GO:0050896);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization or biogenesis (GO:0071554);; Biological Process: regulation of seed maturation (GO:2000034);; "	--	Receptor-like protein kinase HSL1 (Precursor) GN=HSL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si000196m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: receptor-like protein kinase HSL1-like isoform X2 [Setaria italica]
comp215958_c0	1.36E-05	-2.521369812	down	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to UV (GO:0009411);; Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to UV-B (GO:0010224);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: monoterpenoid biosynthetic process (GO:0016099);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: flavonoid 3'-monooxygenase activity (GO:0016711);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Cellular Component: organelle membrane (GO:0031090);; Cellular Component: membrane part (GO:0044425);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	"Flavonoid 3'-monooxygenase GN=CYP75B2 OS=Petunia hybrida (Petunia) PE=2 SV=1"	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp223310_c0	0.004008349	2.073122931	up	[P]	Inorganic ion transport and metabolism 	"Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: ATP biosynthetic process (GO:0006754);; Biological Process: transport (GO:0006810);; Biological Process: cation transport (GO:0006812);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; Molecular Function: cation-transporting ATPase activity (GO:0019829);; Molecular Function: metal ion binding (GO:0046872);; "	K01535|3e-41|pop:POPTR_762873|autoinhibited H+ ATPase	ATPase 6, plasma membrane-type GN=AHA6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	plasma membrane ATPase [Funneliformis mosseae]
comp221923_c0	0.005303939	1.95469981	up	--	--	--	--	--	Uncharacterized protein GN=Si018108m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Setaria italica]
comp230553_c0	0.005919588	1.784400038	up	--	--	"Biological Process: alternative nuclear mRNA splicing, via spliceosome (GO:0000380);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: tRNA modification (GO:0006400);; Biological Process: mRNA export from nucleus (GO:0006406);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: steroid biosynthetic process (GO:0006694);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo sac development (GO:0009553);; Biological Process: response to salt stress (GO:0009651);; Biological Process: etioplast organization (GO:0009662);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to chitin (GO:0010200);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: histone H3-K36 methylation (GO:0010452);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Biological Process: positive regulation of histone methylation (GO:0031062);; Biological Process: DNA duplex unwinding (GO:0032508);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: negative regulation of circadian rhythm (GO:0042754);; Molecular Function: histone methyltransferase activity (H3-K4 specific) (GO:0042800);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: carotenoid isomerase activity (GO:0046608);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: histone methyltransferase activity (H3-K36 specific) (GO:0046975);; Cellular Component: apoplast (GO:0048046);; Biological Process: seed development (GO:0048316);; Biological Process: leaf development (GO:0048366);; Biological Process: ovule development (GO:0048481);; Biological Process: anther development (GO:0048653);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; Biological Process: 5-carbamoylmethyluridine metabolic process (GO:0080178);; "	--	Cinnamoyl-CoA reductase 1 GN=T24D18.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si002317m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: cinnamoyl-CoA reductase 1-like [Setaria italica]
comp123482_c0	0.000245842	-2.901537019	down	[R]	General function prediction only 	"Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Protein Mut11 GN=Mut11 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si038893m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: vegetative incompatibility protein HET-E-1-like [Setaria italica]
comp234444_c0	0.007673201	1.776833392	up	[S]	Function unknown 	"Biological Process: polysaccharide catabolic process (GO:0000272);; Cellular Component: extracellular space (GO:0005615);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: DNA replication (GO:0006260);; Molecular Function: chitin binding (GO:0008061);; Molecular Function: endochitinase activity (GO:0008843);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway (GO:0009871);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: beta-N-acetylglucosaminidase activity (GO:0016231);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; Biological Process: killing of cells of other organism (GO:0031640);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: defense response to fungus (GO:0050832);; "	K10733|2e-73|osa:4327215|Os01g0248600	DNA replication complex GINS protein PSF2 GN=GINS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	DNA replication complex GINS protein PSF2 GN=Si031162m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: DNA replication complex GINS protein PSF2-like isoform X2 [Setaria italica]
comp231298_c0	0.007317183	-1.881866316	down	[R]	General function prediction only 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: voltage-gated potassium channel activity (GO:0005249);; Molecular Function: binding (GO:0005488);; Biological Process: ion transport (GO:0006811);; Biological Process: defense response (GO:0006952);; Biological Process: response to hormone stimulus (GO:0009725);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular protein metabolic process (GO:0044267);; Biological Process: multi-organism process (GO:0051704);; Biological Process: biological regulation (GO:0065007);; "	--	Probable E3 ubiquitin-protein ligase XBOS36 GN=XBOS36 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si016381m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ankyrin-1-like [Setaria italica]
comp538577_c0	6.61E-06	4.472870291	up	--	--	--	--	Formin-like protein 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein OS=Glycine max (Soybean) PE=3 SV=1	hypothetical protein PHACADRAFT_98701 [Phanerochaete carnosa HHB-10118-sp]
comp201865_c0	0.000806659	-4.002673033	down	--	--	--	--	CRIB domain-containing protein RIC3 GN=RIC3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026939m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101769160 isoform X1 [Setaria italica]
comp227759_c1	0.000311223	2.266017875	up	--	--	"Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Cell Division Protein AAA ATPase family OS=Zea mays (Maize) PE=2 SV=1	TPA: cell Division Protein AAA ATPase family protein [Zea mays]
comp229833_c0	0.000187268	2.235123984	up	[H]	Coenzyme transport and metabolism 	"Molecular Function: GTP cyclohydrolase II activity (GO:0003935);; Molecular Function: GTP binding (GO:0005525);; Biological Process: circadian rhythm (GO:0007623);; Molecular Function: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686);; Biological Process: riboflavin biosynthetic process (GO:0009231);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: membrane (GO:0016020);; Biological Process: mRNA modification (GO:0016556);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root hair elongation (GO:0048767);; "	K14652|0.0|sbi:SORBI_04g023640|hypothetical protein	GTP cyclohydrolase-2 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb04g023640 GN=Sb04g023640 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like isoform X1 [Setaria italica]
comp234281_c0	0.001397355	1.938830459	up	[L]	Replication, recombination and repair 	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: RNA helicase activity (GO:0003724);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: posttranscriptional gene silencing by RNA (GO:0035194);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	K12813|0.0|sbi:SORBI_09g019260|hypothetical protein	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase GN=At3g26560 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si024749m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Setaria italica]
comp201973_c0	5.19E-06	2.540866535	up	--	--	"Biological Process: nodulation (GO:0009877);; Cellular Component: integral to membrane (GO:0016021);; "	--	Early nodulin-93 OS=Glycine max (Soybean) PE=2 SV=1	Putative uncharacterized protein Sb10g002830 GN=Sb10g002830 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_10g002830 [Sorghum bicolor] 
comp195542_c0	0.002116879	1.891313682	up	[TZDR]	--	"Molecular Function: calcium ion binding (GO:0005509);; Biological Process: detection of calcium ion (GO:0005513);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to stress (GO:0006950);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: actin filament-based movement (GO:0030048);; Biological Process: Golgi localization (GO:0051645);; Biological Process: mitochondrion localization (GO:0051646);; Biological Process: peroxisome localization (GO:0060151);; "	--	Calmodulin-like protein 5 GN=OsJ_035343 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100280399 [Zea mays] 
comp188521_c0	1.30E-06	2.709850304	up	--	--	--	--	--	Putative uncharacterized protein Sb04g028380 GN=Sb04g028380 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g028380 [Sorghum bicolor] 
comp232051_c0	2.26E-06	2.58175281	up	[S]	Function unknown 	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ion transport (GO:0006811);; Biological Process: cell cycle (GO:0007049);; Biological Process: epidermis development (GO:0008544);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to external stimulus (GO:0009605);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: seed maturation (GO:0010431);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: signaling receptor activity (GO:0038023);; Biological Process: innate immune response (GO:0045087);; Biological Process: gametophyte development (GO:0048229);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: regulation of post-embryonic development (GO:0048580);; Biological Process: developmental growth (GO:0048589);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: anther development (GO:0048653);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization (GO:0071555);; "	--	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor) GN=At1g35710 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si033953m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Setaria italica]
comp230970_c0	3.26E-07	4.121539334	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: fatty acid metabolic process (GO:0006631);; Biological Process: lipid biosynthetic process (GO:0008610);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: cofactor metabolic process (GO:0051186);; Biological Process: monocarboxylic acid biosynthetic process (GO:0072330);; "	--	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor) GN=KAS12 OS=Hordeum vulgare (Barley) PE=1 SV=1	Putative polyketide synthase GN=GSBLH_T00005003001 OS=Blastocystis hominis PE=4 SV=1	6-methylsalicylic acid synthase [Byssochlamys nivea]
comp207499_c0	0.001951145	2.004549576	up	--	--	--	--	CLE2p (Precursor) GN=CLE2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si004325m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein [Oryza sativa Japonica Group] 
comp194863_c0	0.002390672	-2.278400723	down	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; "	--	Late embryogenesis abundant protein 76 OS=Brassica napus (Rape) PE=2 SV=2	Putative uncharacterized protein Sb06g017050 GN=Sb06g017050 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g017050 [Sorghum bicolor] 
comp307783_c0	0.002286658	-3.099139614	down	--	--	"Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; "	--	--	Uncharacterized protein GN=Si037620m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101784456 [Setaria italica]
comp228428_c0	0.000258126	-2.355598073	down	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to endogenous stimulus (GO:0009719);; Biological Process: response to organic substance (GO:0010033);; Biological Process: cellular component organization (GO:0016043);; Biological Process: carboxylic acid biosynthetic process (GO:0046394);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: localization (GO:0051179);; Biological Process: response to other organism (GO:0051707);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Proline-rich receptor-like protein kinase PERK1 GN=PERK1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036366m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable receptor-like protein kinase At1g33260-like [Setaria italica]
comp217638_c0	0.000238496	-2.2354115	down	--	--	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	Proline-rich receptor-like protein kinase PERK2 GN=PERK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Uncharacterized protein GN=Si011184m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: RAB6-interacting golgin-like [Setaria italica]
comp270779_c0	0.000649808	-2.309102947	down	--	--	--	--	--	Uncharacterized protein GN=Si018742m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g006375 [Sorghum bicolor] 
comp214064_c0	0.002035982	1.89668082	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: transposase activity (GO:0004803);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: transposition, DNA-mediated (GO:0006313);; "	--	Uncharacterized protein At1g28695 (Precursor) GN=At1g28695 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si036243m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At4g15970-like [Setaria italica]
comp216960_c0	9.63E-07	3.409404375	up	--	--	--	--	Pollen coat protein B6 GN=OlnB6 OS=Brassica napus (Rape) PE=1 SV=3	Uncharacterized protein GN=Si026709m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101771844 [Setaria italica]
comp474015_c0	0.007836816	-3.16530996	down	[C]	Energy production and conversion 	"Molecular Function: magnesium ion binding (GO:0000287);; Cellular Component: cytosol (GO:0005829);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509);; Molecular Function: acireductone synthase activity (GO:0043874);; Molecular Function: methylthioribulose 1-phosphate dehydratase activity (GO:0046570);; "	--	Enolase-phosphatase E1 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si001841m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	TPA: hypothetical protein ZEAMMB73_994622 [Zea mays]
comp232888_c0	2.39E-05	2.389522543	up	[S]	Function unknown 	"Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; "	--	Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI4G17365 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: disease resistance protein RPM1-like [Brachypodium distachyon]
comp217712_c1	0.001155816	1.960147758	up	--	--	"Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: glucose catabolic process (GO:0006007);; Biological Process: purine nucleobase transport (GO:0006863);; Biological Process: vacuole organization (GO:0007033);; Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: plastid inner membrane (GO:0009528);; Cellular Component: chloroplast thylakoid (GO:0009534);; Biological Process: embryo sac development (GO:0009553);; Biological Process: response to nematode (GO:0009624);; Biological Process: photosynthetic acclimation (GO:0009643);; Molecular Function: triose-phosphate:phosphate antiporter activity (GO:0009670);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: embryo development (GO:0009790);; Biological Process: pollen maturation (GO:0010152);; Molecular Function: phosphoglycerate transmembrane transporter activity (GO:0015120);; Molecular Function: phosphoenolpyruvate:phosphate antiporter activity (GO:0015121);; Molecular Function: glucose-6-phosphate transmembrane transporter activity (GO:0015152);; Biological Process: phosphoglycerate transport (GO:0015713);; Biological Process: phosphoenolpyruvate transport (GO:0015714);; Biological Process: glucose-6-phosphate transport (GO:0015760);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: chloroplast membrane (GO:0031969);; Biological Process: lipid particle organization (GO:0034389);; Biological Process: triose phosphate transmembrane transport (GO:0035436);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: small molecule biosynthetic process (GO:0044283);; Biological Process: biological regulation (GO:0065007);; Molecular Function: triose-phosphate transmembrane transporter activity (GO:0071917);; "	--	Phosphoenolpyruvate/phosphate translocator 3, chloroplastic (Precursor) GN=P0583G08.29 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si022164m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: phosphoenolpyruvate/phosphate translocator 3, chloroplastic-like [Setaria italica]
comp208064_c0	0.005457824	1.777926068	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: binding (GO:0005488);; Molecular Function: iron ion binding (GO:0005506);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: developmental process (GO:0032502);; Biological Process: trans-zeatin biosynthetic process (GO:0033466);; Biological Process: growth (GO:0040007);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: gibberellin catabolic process (GO:0045487);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 734A5 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative cytochrome P450 superfamily protein GN=ZEAMMB73_942316 OS=Zea mays (Maize) PE=3 SV=1	putative cytochrome P450 superfamily protein [Zea mays]
comp216436_c0	3.98E-08	3.186090453	up	--	--	--	--	--	--	--
comp223201_c0	3.19E-05	2.383877113	up	--	--	--	--	--	Putative uncharacterized protein Sb06g029880 GN=Sb06g029880 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g029880 [Sorghum bicolor] 
comp204015_c1	0.000512934	2.56184538	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: cullin deneddylation (GO:0010388);; Biological Process: stomatal lineage progression (GO:0010440);; Biological Process: guard mother cell differentiation (GO:0010444);; Biological Process: mRNA modification (GO:0016556);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: histone methylation (GO:0016571);; Biological Process: protein deubiquitination (GO:0016579);; Biological Process: lipid storage (GO:0019915);; Biological Process: post-translational protein modification (GO:0043687);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: response to freezing (GO:0050826);; "	--	Transcription factor ICE1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si001874m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor bHLH93-like isoform X2 [Setaria italica]
comp217149_c0	7.94E-06	2.469386321	up	[R]	General function prediction only 	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; "	--	--	Putative uncharacterized protein Sb01g047460 GN=Sb01g047460 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g047460 [Sorghum bicolor] 
comp231106_c0	0.000931776	2.187175964	up	--	--	"Cellular Component: cell part (GO:0044464);; "	--	Putative clathrin assembly protein At5g57200 GN=At5g57200 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Putative uncharacterized protein Sb04g005060 GN=Sb04g005060 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g005060 [Sorghum bicolor] 
comp188460_c0	0.002553467	2.872656705	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: plastid (GO:0009536);; Cellular Component: ribonucleoprotein complex (GO:0030529);; "	--	30S ribosomal protein S15, chloroplastic GN=rps15 OS=Chlorokybus atmophyticus (Soil alga) PE=3 SV=1	30S ribosomal protein S15 GN=CHLNCDRAFT_134327 OS=Chlorella variabilis (Green alga) PE=3 SV=1	30S ribosomal protein S15 [Paulinella chromatophora] 
comp164681_c1	0.003365056	2.999824431	up	--	--	--	--	--	Stackhouse genomic scaffold, scaffold_275 GN=CHC_T00005217001 OS=Chondrus crispus (Carragheen moss) PE=4 SV=1	unnamed protein product [Chondrus crispus]
comp230814_c0	6.30E-06	2.981155934	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	F-box protein SKIP23 GN=SKIP23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb06g029410 GN=Sb06g029410 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g029410 [Sorghum bicolor] 
comp212588_c0	2.22E-16	5.707311055	up	--	--	--	--	--	--	--
comp221903_c1	0.004618562	-1.96844172	down	--	--	--	--	--	--	TPA: hypothetical protein ZEAMMB73_136334 [Zea mays]
comp221454_c0	4.23E-06	-2.905023864	down	[H]	Coenzyme transport and metabolism 	"Biological Process: maltose metabolic process (GO:0000023);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to stress (GO:0006950);; Biological Process: response to DNA damage stimulus (GO:0006974);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: thiamine biosynthetic process (GO:0009228);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: response to blue light (GO:0009637);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of proton transport (GO:0010155);; Cellular Component: stromule (GO:0010319);; Biological Process: starch biosynthetic process (GO:0019252);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: positive regulation of catalytic activity (GO:0043085);; Biological Process: protein autophosphorylation (GO:0046777);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: thiazole biosynthetic process (GO:0052837);; "	K03146|1e-117|vcn:VOLCADRAFT_74899|hypothetical protein	Thiamine thiazole synthase, chloroplastic (Precursor) GN=THI1 OS=Citrus sinensis (Sweet orange) PE=2 SV=1	Thiamine thiazole synthase GN=GUITHDRAFT_93981 OS=Guillardia theta CCMP2712 PE=3 SV=1	thiazole biosynthetic enzyme [Chaetomium globosum] 
comp213950_c0	0.002344445	-2.589276543	down	--	--	--	--	--	--	--
comp204837_c0	0.003444028	1.878861481	up	--	--	"Molecular Function: carboxylesterase activity (GO:0004091);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to UV (GO:0009411);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin metabolic process (GO:0045488);; "	K01051|0.0|sbi:SORBI_01g022290|hypothetical protein	Pectinesterase 31 GN=MXE2.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g022290 GN=Sb01g022290 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_01g022290 [Sorghum bicolor] 
comp218378_c0	0.000106179	2.975475125	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: protein binding (GO:0005515);; Biological Process: iron ion transport (GO:0006826);; Cellular Component: plastid (GO:0009536);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264);; Molecular Function: arsenite transmembrane transporter activity (GO:0015105);; Molecular Function: glycerol transmembrane transporter activity (GO:0015168);; Molecular Function: urea transmembrane transporter activity (GO:0015204);; Molecular Function: water channel activity (GO:0015250);; Biological Process: arsenite transport (GO:0015700);; Biological Process: nitrate transport (GO:0015706);; Biological Process: glycerol transport (GO:0015793);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: lateral plasma membrane (GO:0016328);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: borate transmembrane transport (GO:0035445);; Biological Process: response to arsenic-containing substance (GO:0046685);; Biological Process: urea transmembrane transport (GO:0071918);; Biological Process: cellular response to boron-containing substance levels (GO:0080029);; Molecular Function: borate uptake transmembrane transporter activity (GO:0080138);; "	--	Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb07g003370 GN=Sb07g003370 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_07g003370 [Sorghum bicolor] 
comp234051_c0	9.44E-06	2.608533937	up	--	--	--	--	--	Uncharacterized protein GN=ZEAMMB73_318198 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101759887 [Setaria italica]
comp220784_c1	0.000457344	-2.163816646	down	[V]	Defense mechanisms 	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar lumen (GO:0005775);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: amino acid transport (GO:0006865);; Biological Process: vacuolar transport (GO:0007034);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Cellular Component: external side of plasma membrane (GO:0009897);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: transpiration (GO:0010148);; Molecular Function: fatty acid transporter activity (GO:0015245);; Molecular Function: ferric-transporting ATPase activity (GO:0015408);; Biological Process: fatty acid transport (GO:0015908);; Cellular Component: membrane (GO:0016020);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: antibiotic transport (GO:0042891);; Biological Process: cutin transport (GO:0080051);; "	--	ABC transporter G family member 19 GN=T26I12.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si015555m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: ABC transporter G family member 18-like, partial [Brachypodium distachyon]
comp232610_c0	0.003879952	1.831979328	up	[MG]	--	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: alternative nuclear mRNA splicing, via spliceosome (GO:0000380);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: tRNA modification (GO:0006400);; Biological Process: mRNA export from nucleus (GO:0006406);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: Golgi organization (GO:0007030);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo sac development (GO:0009553);; Biological Process: response to salt stress (GO:0009651);; Biological Process: etioplast organization (GO:0009662);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to chitin (GO:0010200);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: histone H3-K36 methylation (GO:0010452);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Biological Process: positive regulation of histone methylation (GO:0031062);; Biological Process: DNA duplex unwinding (GO:0032508);; Biological Process: regulation of gene expression, epigenetic (GO:0040029);; Biological Process: negative regulation of circadian rhythm (GO:0042754);; Molecular Function: histone methyltransferase activity (H3-K4 specific) (GO:0042800);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: carotenoid isomerase activity (GO:0046608);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: histone methyltransferase activity (H3-K36 specific) (GO:0046975);; Cellular Component: apoplast (GO:0048046);; Biological Process: seed development (GO:0048316);; Biological Process: leaf development (GO:0048366);; Biological Process: ovule development (GO:0048481);; Biological Process: anther development (GO:0048653);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: sporopollenin biosynthetic process (GO:0080110);; Biological Process: 5-carbamoylmethyluridine metabolic process (GO:0080178);; "	--	Cinnamoyl-CoA reductase 1 GN=T24D18.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si015117m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp205841_c0	0.006133771	-3.665591194	down	[P]	Inorganic ion transport and metabolism 	"Biological Process: response to superoxide (GO:0000303);; Cellular Component: proteasome complex (GO:0000502);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: L-serine ammonia-lyase activity (GO:0003941);; Molecular Function: copper-exporting ATPase activity (GO:0004008);; Molecular Function: copper ion transmembrane transporter activity (GO:0005375);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: L-serine metabolic process (GO:0006563);; Biological Process: protein import into nucleus (GO:0006606);; Biological Process: ATP biosynthetic process (GO:0006754);; Biological Process: cell death (GO:0008219);; Molecular Function: D-serine ammonia-lyase activity (GO:0008721);; Cellular Component: plastid (GO:0009536);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to salt stress (GO:0009651);; Biological Process: photosynthetic electron transport chain (GO:0009767);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: detoxification of copper ion (GO:0010273);; Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism (GO:0015662);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Molecular Function: serine racemase activity (GO:0030378);; Biological Process: copper ion transmembrane transport (GO:0035434);; Molecular Function: protein self-association (GO:0043621);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: copper ion export (GO:0060003);; Biological Process: D-serine metabolic process (GO:0070178);; "	K01533|2e-72|osa:4336625|Os04g0556000	Probable copper-transporting ATPase HMA5 GN=HMA5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si009256m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: putative copper-transporting ATPase HMA5-like [Setaria italica]
comp217872_c1	6.61E-06	4.472870291	up	[I]	Lipid transport and metabolism 	"Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Biological Process: coenzyme A metabolic process (GO:0015936);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	--	--	3-hydroxy-3-methylglutaryl-coenzyme A reductase [Cochliobolus eleusines]
comp222902_c3	1.69E-07	3.744316008	up	--	--	--	--	--	--	--
comp207133_c0	1.51E-06	-3.709512848	down	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: defense response (GO:0006952);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: regulation of response to stimulus (GO:0048583);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: regulation of cellular process (GO:0050794);; "	--	U-box domain-containing protein 14 GN=PUB14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si029667m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 10-like isoform X1 [Setaria italica] 
comp210450_c0	1.75E-14	-5.192086058	down	[S]	Function unknown 	"Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ion transport (GO:0006811);; Biological Process: iron ion transport (GO:0006826);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: amino acid transport (GO:0006865);; Cellular Component: plastid (GO:0009536);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to iron ion (GO:0010039);; Biological Process: response to zinc ion (GO:0010043);; Molecular Function: oligopeptide transporter activity (GO:0015198);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: seed development (GO:0048316);; Molecular Function: iron-nicotianamine transmembrane transporter activity (GO:0051980);; Biological Process: iron ion homeostasis (GO:0055072);; Biological Process: transmembrane transport (GO:0055085);; "	--	Iron-phytosiderophore transporter yellow stripe 1 GN=YS1 OS=Zea mays (Maize) PE=2 SV=1	Putative uncharacterized protein Sb04g033320 GN=Sb04g033320 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g033320 [Sorghum bicolor] 
comp215476_c0	0.000306181	2.195335816	up	--	--	"Cellular Component: peroxisome (GO:0005777);; "	--	--	Uncharacterized protein GN=F775_28789 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101785845 [Setaria italica]
comp221407_c0	2.17E-06	2.587078887	up	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: response to stress (GO:0006950);; "	--	Ethylene-responsive transcription factor ERF071 GN=ERF071 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	AP2-EREBP-type transcription factor (Fragment) OS=Zea mays subsp. mays (maize) PE=2 SV=1	putative AP2/EREBP transcription factor superfamily protein [Zea mays] 
comp233939_c3	1.07E-05	-2.597574041	down	[J]	Translation, ribosomal structure and biogenesis 	"Biological Process: transition metal ion transport (GO:0000041);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endosome (GO:0005768);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: glucan biosynthetic process (GO:0009250);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to wounding (GO:0009611);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: procambium histogenesis (GO:0010067);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: xylem development (GO:0010089);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: response to UV-B (GO:0010224);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: microsporocyte differentiation (GO:0010480);; Biological Process: pollen exine formation (GO:0010584);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: beta-amylase activity (GO:0016161);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Molecular Function: peptide binding (GO:0042277);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: protein homodimerization activity (GO:0042803);; Cellular Component: protein complex (GO:0043234);; Biological Process: macromolecule methylation (GO:0043414);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: tapetal cell differentiation (GO:0048657);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: cell wall organization (GO:0071555);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; Biological Process: regulation of seedling development (GO:1900140);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) GN=At4g26540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si000114m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Setaria italica]
comp203393_c3	0.00456926	1.937293633	up	--	--	--	--	--	--	--
comp226825_c0	0.000983716	-2.375326317	down	--	--	"Biological Process: polysaccharide catabolic process (GO:0000272);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: translation (GO:0006412);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: pattern specification process (GO:0007389);; Biological Process: cell proliferation (GO:0008283);; Biological Process: regulation of cell size (GO:0008361);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to symbiotic fungus (GO:0009610);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: response to chitin (GO:0010200);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: cell wall modification (GO:0042545);; Biological Process: amino acid import (GO:0043090);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: shoot development (GO:0048367);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: root hair elongation (GO:0048767);; Biological Process: plant-type cell wall cellulose metabolic process (GO:0052541);; Biological Process: cell wall pectin metabolic process (GO:0052546);; Biological Process: positive regulation of secondary growth (GO:2000605);; "	--	Probable inactive receptor kinase RLK902 (Precursor) GN=RLK902 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb07g020850 GN=Sb07g020850 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_07g020850 [Sorghum bicolor] 
comp223562_c0	5.82E-07	-2.844454647	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g046050 GN=Sb01g046050 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781086 [Setaria italica]
comp216735_c0	1.23E-05	-2.840225928	down	--	--	"Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor (GO:0050664);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative respiratory burst oxidase protein E GN=OJ1328_D07.24-2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	PREDICTED: respiratory burst oxidase homolog protein E-like [Setaria italica]
comp131191_c0	2.80E-06	3.897018537	up	--	--	--	--	--	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_72049 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_72049, partial [Aureococcus anophagefferens]
comp217894_c1	0.000854804	-3.06096133	down	--	--	"Biological Process: mitotic cell cycle (GO:0000278);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: endocytosis (GO:0006897);; Biological Process: cell adhesion (GO:0007155);; Molecular Function: ARF GTPase activator activity (GO:0008060);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: xylem development (GO:0010089);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: cell growth (GO:0016049);; Cellular Component: endocytic vesicle (GO:0030139);; Cellular Component: trans-Golgi network transport vesicle (GO:0030140);; Biological Process: regulation of ARF GTPase activity (GO:0032312);; Biological Process: regulation of chromosome organization (GO:0033044);; Molecular Function: phosphatidylinositol binding (GO:0035091);; Biological Process: actin nucleation (GO:0045010);; Biological Process: regulation of cell differentiation (GO:0045595);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: floral organ formation (GO:0048449);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: developmental growth (GO:0048589);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: cell wall organization (GO:0071555);; "	K12489|3e-26|zma:100383138|hypothetical protein LOC100383138	ADP-ribosylation factor GTPase-activating protein AGD3 GN=T31B5.120 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	putative ARF GTPase activating domain protein with ankyrin repeat-containing protein [Zea mays] 
comp217449_c0	0.001012643	2.131275223	up	--	--	"Cellular Component: plastid (GO:0009536);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cytoplasmic part (GO:0044444);; "	--	Uclacyanin-2 (Precursor) GN=At2g44790 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: mavicyanin-like [Brachypodium distachyon]
comp198571_c0	0.003349692	1.885705627	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	Protein LURP-one-related 15 GN=At5g01750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp128385_c0	0.004964755	-2.408908079	down	--	--	"Cellular Component: plastid (GO:0009536);; "	--	Putative E3 ubiquitin-protein ligase LIN-1 GN=CERBERUS OS=Lotus japonicus (Lotus corniculatus var. japonicus) PE=2 SV=2	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Setaria italica]
comp217474_c1	2.13E-08	-3.656590908	down	--	--	"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: innate immune response (GO:0045087);; Biological Process: response to other organism (GO:0051707);; "	--	L-type lectin-domain containing receptor kinase VIII.2 (Precursor) GN=LECRK82 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si021314m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: L-type lectin-domain containing receptor kinase VIII.1-like [Setaria italica]
comp200128_c0	0.005775066	-3.218168725	down	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: zinc ion transport (GO:0006829);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: detection of external stimulus (GO:0009581);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: response to insect (GO:0009625);; Biological Process: response to absence of light (GO:0009646);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: polar nucleus fusion (GO:0010197);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; "	--	--	Putative calmodulin-binding family protein GN=ZEAMMB73_951509 OS=Zea mays (Maize) PE=2 SV=1	calmodulin binding protein [Zea mays] 
comp129809_c0	0.000867234	2.073362532	up	--	--	--	--	--	Uncharacterized protein GN=Si025227m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101766881 [Setaria italica]
comp225098_c0	0.000832513	-3.251962852	down	--	--	--	--	--	Putative uncharacterized protein Sb03g029950 GN=Sb03g029950 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g029950 [Sorghum bicolor] 
comp191048_c0	0.001001039	-3.500139829	down	--	--	"Biological Process: metabolic process (GO:0008152);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: cell part (GO:0044464);; Biological Process: regulation of biological process (GO:0050789);; "	--	Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si036287m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: embryonic protein DC-8-like [Setaria italica]
comp223799_c0	4.75E-05	2.300661638	up	--	--	"Cellular Component: membrane (GO:0016020);; "	--	--	Uncharacterized protein GN=Si014342m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101763841 [Setaria italica]
comp214695_c0	7.63E-05	-2.421148281	down	--	--	"Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: water transport (GO:0006833);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Molecular Function: acidic amino acid transmembrane transporter activity (GO:0015172);; Molecular Function: basic amino acid transmembrane transporter activity (GO:0015174);; Molecular Function: neutral amino acid transmembrane transporter activity (GO:0015175);; Molecular Function: primary active transmembrane transporter activity (GO:0015399);; Biological Process: neutral amino acid transport (GO:0015804);; Biological Process: arginine transport (GO:0015809);; Biological Process: aspartate transport (GO:0015810);; Biological Process: tryptophan transport (GO:0015827);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: amino acid import (GO:0043090);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	Amino acid permease 3 GN=AAP3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb09g020790 GN=Sb09g020790 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g020790 [Sorghum bicolor] 
comp213458_c3	0.005669901	-1.923078362	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: water transport (GO:0006833);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: xylem development (GO:0010089);; Biological Process: seed coat development (GO:0010214);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|1e-122|osa:4343049|Os07g0424400	Probable cellulose synthase A catalytic subunit 3 [UDP-forming] GN=P0409D09.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Cellulose synthase BoCesA6 (Fragment) OS=Bambusa oldhamii (Giant timber bamboo) PE=2 SV=2	cellulose synthase BoCesA6 [Bambusa oldhamii]
comp231138_c1	0.00075326	2.128595536	up	[T]	Signal transduction mechanisms 	"Molecular Function: two-component sensor activity (GO:0000155);; Molecular Function: two-component response regulator activity (GO:0000156);; Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160);; Molecular Function: protein histidine kinase activity (GO:0004673);; Molecular Function: transmembrane signaling receptor activity (GO:0004888);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to heat (GO:0009408);; Biological Process: response to cold (GO:0009409);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: cytokinin metabolic process (GO:0009690);; Biological Process: detection of ethylene stimulus (GO:0009727);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: negative regulation of ethylene mediated signaling pathway (GO:0010105);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: phosphorylation (GO:0016310);; Biological Process: regulation of metabolic process (GO:0019222);; Molecular Function: kinase binding (GO:0019900);; Biological Process: signal transduction by phosphorylation (GO:0023014);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: root development (GO:0048364);; Biological Process: shoot development (GO:0048367);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Molecular Function: ethylene binding (GO:0051740);; Biological Process: defense response by callose deposition in cell wall (GO:0052544);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to carbohydrate stimulus (GO:0071322);; Biological Process: cellular response to nitric oxide (GO:0071732);; Biological Process: regulation of stomatal closure (GO:0090333);; Biological Process: regulation of seedling development (GO:1900140);; "	--	Histidine kinase 3 GN=F17L21.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Predicted protein (Fragment) GN=OSTLU_1394 OS=Ostreococcus lucimarinus (strain CCE9901) PE=4 SV=1	two-component histidine kinase [Cochliobolus heterostrophus]
comp221304_c0	0.005676294	-1.848220551	down	--	--	--	--	--	--	--
comp205841_c3	0.004174012	-2.435479539	down	[P]	Inorganic ion transport and metabolism 	"Molecular Function: L-serine ammonia-lyase activity (GO:0003941);; Molecular Function: copper ion transmembrane transporter activity (GO:0005375);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cell wall (GO:0005618);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: L-serine metabolic process (GO:0006563);; Biological Process: ATP biosynthetic process (GO:0006754);; Biological Process: copper ion transport (GO:0006825);; Molecular Function: D-serine ammonia-lyase activity (GO:0008721);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: detoxification of copper ion (GO:0010273);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Molecular Function: serine racemase activity (GO:0030378);; Molecular Function: protein self-association (GO:0043621);; Molecular Function: copper-transporting ATPase activity (GO:0043682);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: D-serine metabolic process (GO:0070178);; "	K01533|1e-158|osa:4336625|Os04g0556000	Probable copper-transporting ATPase HMA5 GN=HMA5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	Os04g0556000 [Oryza sativa Japonica Group] 
comp233497_c3	0.000894166	1.991792337	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein GN=Si037999m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: late embryogenesis abundant protein Lea5-D-like [Setaria italica]
comp225829_c0	1.78E-05	2.458344884	up	[RTKL]	--	"Molecular Function: actin binding (GO:0003779);; Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683);; Molecular Function: receptor signaling protein serine/threonine kinase activity (GO:0004702);; Molecular Function: calcium-dependent protein serine/threonine phosphatase activity (GO:0004723);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: Arp2/3 protein complex (GO:0005885);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: amino acid transport (GO:0006865);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: signal transduction (GO:0007165);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to salt stress (GO:0009651);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to chitin (GO:0010200);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: actin filament polymerization (GO:0030041);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: regulation of pollen tube growth (GO:0080092);; "	--	Calcium-dependent protein kinase 16 GN=CPK16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si016899m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	putative calcium-dependent protein kinase family protein [Zea mays] 
comp202625_c0	0.000269377	-2.498587426	down	[R]	General function prediction only 	"Molecular Function: acid phosphatase activity (GO:0003993);; Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: extracellular region (GO:0005576);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: protein serine/threonine phosphatase complex (GO:0008287);; Cellular Component: membrane (GO:0016020);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: ovule development (GO:0048481);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Probable inactive purple acid phosphatase 16 (Precursor) GN=PAP16 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si001834m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable inactive purple acid phosphatase 16-like isoform X2 [Setaria italica]
comp202030_c0	2.31E-06	-3.221472691	down	[V]	Defense mechanisms 	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Cellular Component: membrane (GO:0016020);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: carboxylic acid transport (GO:0046942);; Biological Process: response to stimulus (GO:0050896);; "	--	ABC transporter G family member 5 GN=T10F5.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si024321m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: ABC transporter G family member 5-like [Setaria italica]
comp223979_c4	0.001551938	-3.898823936	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Cellular Component: endosome (GO:0005768);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycolysis (GO:0006096);; Biological Process: calcium ion transport (GO:0006816);; Biological Process: water transport (GO:0006833);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to temperature stimulus (GO:0009266);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: primary cell wall biogenesis (GO:0009833);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: xylem development (GO:0010089);; Biological Process: seed coat development (GO:0010214);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: rhamnogalacturonan I side chain metabolic process (GO:0010400);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: root hair elongation (GO:0048767);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: cell wall thickening (GO:0052386);; "	K10999|3e-48|osa:4348853|Os10g0467800	Cellulose synthase A catalytic subunit 7 [UDP-forming] GN=OSJNBa0006L06.10 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp197390_c0	0.001293709	2.070108226	up	--	--	--	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein [Zea mays] 
comp225446_c0	6.55E-12	4.013195912	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: alpha-amylase activity (GO:0004556);; Molecular Function: calcium ion binding (GO:0005509);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: sucrose catabolic process (GO:0005987);; Biological Process: circadian rhythm (GO:0007623);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to gibberellin stimulus (GO:0009739);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: secretion by cell (GO:0032940);; Cellular Component: apoplast (GO:0048046);; "	--	Alpha-amylase isozyme 3D (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=OB08G25020 OS=Oryza brachyantha PE=3 SV=1	"RecName: Full=Alpha-amylase isozyme 3D; AltName: Full=1,4-alpha-D-glucan glucanohydrolase; Flags: Precursor "
comp169862_c0	0.000226649	2.136772253	up	[R]	General function prediction only 	"Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: early endosome (GO:0005769);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: N-terminal protein myristoylation (GO:0006499);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Biological Process: cellular membrane fusion (GO:0006944);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: positive gravitropism (GO:0009958);; Cellular Component: external side of endosome membrane (GO:0010009);; Biological Process: response to chitin (GO:0010200);; Biological Process: protein transport (GO:0015031);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: GTP-dependent protein binding (GO:0030742);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: negative regulation of defense response (GO:0031348);; Cellular Component: trans-Golgi network membrane (GO:0032588);; Biological Process: secretion by cell (GO:0032940);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: early endosome to late endosome transport (GO:0045022);; Biological Process: lateral root development (GO:0048527);; Biological Process: fruit morphogenesis (GO:0048530);; Molecular Function: myosin XI tail binding (GO:0080115);; "	--	Ras-related protein RABH1e GN=RABH1E OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si037471m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: ras-related protein RABH1e-like [Setaria italica]
comp231231_c0	0.008049528	1.838064483	up	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA metabolic process (GO:0006259);; Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772);; Molecular Function: ion binding (GO:0043167);; "	--	Putative ribonuclease H protein At1g65750 GN=At1g65750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Putative gag-pol polyprotein GN=Z195D10.11 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101781465 [Setaria italica]
comp216282_c0	0.00017723	-2.39318803	down	--	--	--	--	--	Uncharacterized protein GN=Si026327m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101775908 [Setaria italica]
comp201585_c0	4.89E-09	4.184122576	up	--	--	"Molecular Function: N-acetyltransferase activity (GO:0008080);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: auxin mediated signaling pathway (GO:0009734);; Biological Process: unidimensional cell growth (GO:0009826);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035947m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101770019 [Setaria italica]
comp190310_c1	0.000222464	-2.325339081	down	[S]	Function unknown 	"Molecular Function: binding (GO:0005488);; Molecular Function: ATP binding (GO:0005524);; Biological Process: apoptotic process (GO:0006915);; Cellular Component: cell part (GO:0044464);; "	--	Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si028838m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable disease resistance protein RXW24L-like [Setaria italica]
comp164230_c0	0.000843842	1.998976668	up	--	--	--	--	F-box protein At1g55000 GN=At1g55000 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si036405m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101785793 [Setaria italica]
comp226714_c0	4.55E-05	2.307941071	up	--	--	"Cellular Component: membrane (GO:0016020);; Cellular Component: cell periphery (GO:0071944);; "	--	Extensin (Precursor) GN=HRGP OS=Zea mays (Maize) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp222969_c0	1.44E-05	2.41389183	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: bis(5'-adenosyl)-pentaphosphatase activity (GO:0034432);; "	--	Nudix hydrolase 13, mitochondrial (Precursor) GN=MLJ15.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si026847m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: nudix hydrolase 13, mitochondrial-like isoform X2 [Setaria italica]
comp221104_c0	2.72E-05	-4.00017163	down	--	--	"Biological Process: RNA processing (GO:0006396);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si009602m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g000630 [Sorghum bicolor] 
comp222266_c0	0.003325349	2.017090265	up	--	--	"Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: uncharacterized protein LOC101754054 [Setaria italica]
comp225645_c0	3.36E-06	2.564052392	up	--	--	"Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellular component organization (GO:0016043);; Biological Process: root development (GO:0048364);; Biological Process: cell development (GO:0048468);; Biological Process: developmental growth (GO:0048589);; "	--	Glycine-rich cell wall structural protein 1.0 (Precursor) OS=Phaseolus vulgaris (Kidney bean) PE=2 SV=1	Putative uncharacterized protein GN=OsJ_31735 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	hypothetical protein OsI_33847 [Oryza sativa Indica Group] 
comp171739_c0	2.50E-12	-4.400531431	down	[GEPR]	--	"Molecular Function: sugar:hydrogen symporter activity (GO:0005351);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Biological Process: purine nucleobase transport (GO:0006863);; Molecular Function: sucrose:hydrogen symporter activity (GO:0008506);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: response to heat (GO:0009408);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to nitrate (GO:0010167);; Molecular Function: monosaccharide transmembrane transporter activity (GO:0015145);; Biological Process: nitrate transport (GO:0015706);; Biological Process: sucrose transport (GO:0015770);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: transmembrane transport (GO:0055085);; "	--	Sugar transport protein 5 GN=STP5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein (Fragment) GN=Si012289m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: sugar transport protein 5-like [Setaria italica]
comp228940_c0	1.01E-07	-3.160941298	down	--	--	"Cellular Component: ubiquitin ligase complex (GO:0000151);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: cellular component organization (GO:0016043);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; Biological Process: cellular response to stress (GO:0033554);; Cellular Component: intracellular part (GO:0044424);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: localization (GO:0051179);; Biological Process: cellular response to organic substance (GO:0071310);; "	--	U-box domain-containing protein 41 GN=PUB41 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si029391m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: U-box domain-containing protein 39-like [Setaria italica]
comp233629_c0	0.00229934	2.048083005	up	--	--	"Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: cell part (GO:0044464);; "	--	Aspartic proteinase Asp1 (Precursor) GN=ASP1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si026419m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: aspartic proteinase Asp1-like [Setaria italica]
comp224945_c1	5.67E-08	4.562594303	up	--	--	--	--	--	Putative uncharacterized protein GN=CHLNCDRAFT_133778 OS=Chlorella variabilis (Green alga) PE=4 SV=1	clock Gene frequency
comp222407_c0	0.001952076	3.323086301	up	--	--	--	--	--	--	hypothetical protein [Yarrowia lipolytica]
comp228387_c0	0.000298494	-2.323794439	down	[M]	Cell wall/membrane/envelope biogenesis 	--	--	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101774579 [Setaria italica]
comp231697_c0	0.001795033	1.960642245	up	--	--	--	--	--	Uncharacterized protein (Fragment) OS=Oryza glaberrima (African rice) PE=4 SV=1	--
comp213786_c1	0.000188947	-2.864948549	down	--	--	"Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; Biological Process: protein localization (GO:0008104);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to organic substance (GO:0010033);; Biological Process: protoderm histogenesis (GO:0010068);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: protein desumoylation (GO:0016926);; Molecular Function: protein kinase binding (GO:0019901);; Biological Process: cuticle development (GO:0042335);; Biological Process: cell wall modification (GO:0042545);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: organ formation (GO:0048645);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response (GO:0052033);; Biological Process: organic substance transport (GO:0071702);; "	--	Protein kinase APK1B, chloroplastic (Precursor) GN=APK1B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: serine/threonine-protein kinase PBS1-like [Brachypodium distachyon]
comp217208_c0	0.001324344	2.039548704	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to stress (GO:0006950);; "	--	Abscisic stress-ripening protein 3 GN=ASR3 OS=Solanum lycopersicum (Tomato) PE=4 SV=2	Uncharacterized protein GN=Si011429m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: abscisic stress-ripening protein 3-like [Setaria italica]
comp359200_c0	0.006569125	-2.928188777	down	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: cellular process (GO:0009987);; "	--	Probable F-box protein At1g60180 GN=At2g36090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Os11g0155100 protein GN=OsJ_33014 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os11g0155100 [Oryza sativa Japonica Group] 
comp225745_c0	2.97E-05	-2.614142119	down	--	--	"Cellular Component: vacuole (GO:0005773);; Cellular Component: anchored to membrane (GO:0031225);; Cellular Component: aleurone grain membrane (GO:0032578);; "	--	Arabinogalactan peptide 3 (Precursor) GN=AGPEP3 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Putative uncharacterized protein Sb03g032490 GN=Sb03g032490 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g032490 [Sorghum bicolor] 
comp229122_c0	0.009879901	1.781097965	up	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to bacterium (GO:0009617);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: innate immune response (GO:0045087);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: regulation of cellular process (GO:0050794);; "	K13456|1e-78|sbi:SORBI_07g026510|hypothetical protein	NOI-like protein OS=Elaeis oleifera (American oil palm) PE=2 SV=1	Uncharacterized protein GN=Si014387m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: RPM1-interacting protein 4-like isoform X3 [Setaria italica]
comp219610_c0	7.28E-05	-2.343127401	down	--	--	"Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: protein desumoylation (GO:0016926);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g026760 GN=Sb02g026760 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g026760 [Sorghum bicolor] 
comp234559_c0	0.008773696	1.92442028	up	[GHR]	--	"Biological Process: mitotic cell cycle (GO:0000278);; Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: response to hypoxia (GO:0001666);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: pyruvate decarboxylase activity (GO:0004737);; Cellular Component: intracellular (GO:0005622);; Cellular Component: cytosol (GO:0005829);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: RNA processing (GO:0006396);; Biological Process: sulfur compound metabolic process (GO:0006790);; Biological Process: cytoskeleton organization (GO:0007010);; Biological Process: sister chromatid cohesion (GO:0007062);; Biological Process: reciprocal meiotic recombination (GO:0007131);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: purine ribonucleotide metabolic process (GO:0009150);; Cellular Component: chloroplast (GO:0009507);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: response to gamma radiation (GO:0010332);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Cellular Component: membrane (GO:0016020);; Molecular Function: thiamine pyrophosphate binding (GO:0030976);; Biological Process: regulation of telomere maintenance (GO:0032204);; Biological Process: meiotic DNA double-strand break formation (GO:0042138);; Biological Process: telomere maintenance in response to DNA damage (GO:0043247);; Biological Process: meiotic chromosome segregation (GO:0045132);; Biological Process: xylan biosynthetic process (GO:0045492);; Molecular Function: protein dimerization activity (GO:0046983);; Molecular Function: adenylylsulfatase activity (GO:0047627);; "	K01568|0.0|sbi:SORBI_01g038360|hypothetical protein	Pyruvate decarboxylase 2 GN=PDC2 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si034754m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	TPA: hypothetical protein ZEAMMB73_940063 [Zea mays]
comp314798_c0	5.87E-11	5.625736005	up	--	--	--	--	--	Uncharacterized protein GN=Bra036479 OS=Brassica rapa subsp. pekinensis (Chinese cabbage) PE=4 SV=1	--
comp380608_c0	0.00877059	-3.600875188	down	--	--	"Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: plant-type cell wall modification (GO:0009827);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: sexual reproduction (GO:0019953);; "	--	Expansin-B11 (Precursor) OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb04g032820 GN=Sb04g032820 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_04g032820 [Sorghum bicolor] 
comp197959_c0	9.99E-05	4.134804076	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: hydrolase activity (GO:0016787);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=PYU1_G006315 OS=Pythium ultimum PE=3 SV=1	putative endo-1,3-beta-glucanase [Phytophthora infestans]
comp234354_c1	0.002626863	-2.292669322	down	--	--	"Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Molecular Function: ATPase activity (GO:0016887);; "	--	ABC transporter A family member 7 GN=T23J7.110 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2	Putative ABC transporter GN=OJ1198_B10.15 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	PREDICTED: ABC transporter A family member 8-like [Setaria italica]
comp224157_c0	1.60E-06	2.609442584	up	--	--	--	--	--	Putative uncharacterized protein Sb06g023890 GN=Sb06g023890 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g023890 [Sorghum bicolor] 
comp217305_c0	0.000248026	2.237337858	up	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Glycine-rich cell wall structural protein 1.0 (Precursor) OS=Phaseolus vulgaris (Kidney bean) PE=2 SV=1	Uncharacterized protein GN=OB06G15790 OS=Oryza brachyantha PE=4 SV=1	Os06g0211100 [Oryza sativa Japonica Group] 
comp122934_c0	8.86E-06	3.770131597	up	--	--	--	--	--	--	--
comp196530_c1	0.001677728	2.135319265	up	--	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: binding (GO:0005488);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: cellular component organization (GO:0016043);; Biological Process: growth (GO:0040007);; Cellular Component: intracellular part (GO:0044424);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: anatomical structure development (GO:0048856);; Biological Process: regulation of biological process (GO:0050789);; "	--	Uclacyanin-2 (Precursor) GN=At2g44790 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb04g027290 GN=Sb04g027290 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g027290 [Sorghum bicolor] 
comp198055_c0	4.72E-08	-3.085525949	down	--	--	"Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Auxin-induced in root cultures protein 12 (Precursor) GN=AIR12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Putative uncharacterized protein Sb02g029010 GN=Sb02g029010 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_453107 [Zea mays]
comp233836_c0	0.000959242	2.038940008	up	--	--	"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; "	--	--	Ribosomal protein S10 GN=MTR_1g006120 OS=Medicago truncatula (Barrel medic) PE=3 SV=1	Ribosomal protein S10 [Medicago truncatula] 
comp234046_c3	0.000175965	-2.268311422	down	[V]	Defense mechanisms 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: response to superoxide (GO:0000303);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: cell adhesion (GO:0007155);; Biological Process: regulation of cell size (GO:0008361);; Molecular Function: xenobiotic-transporting ATPase activity (GO:0008559);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: response to nematode (GO:0009624);; Biological Process: response to blue light (GO:0009637);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to carbohydrate stimulus (GO:0009743);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: cell tip growth (GO:0009932);; Biological Process: positive gravitropism (GO:0009958);; Biological Process: vernalization response (GO:0010048);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: formation of organ boundary (GO:0010160);; Biological Process: response to far red light (GO:0010218);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: auxin efflux (GO:0010315);; Molecular Function: auxin influx transmembrane transporter activity (GO:0010328);; Molecular Function: auxin efflux transmembrane transporter activity (GO:0010329);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: acropetal auxin transport (GO:0010541);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: amino acid import (GO:0043090);; Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161);; Biological Process: proteasome assembly (GO:0043248);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: actin nucleation (GO:0045010);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: carpel development (GO:0048440);; Biological Process: stamen development (GO:0048443);; Biological Process: lateral root development (GO:0048527);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: root hair elongation (GO:0048767);; Biological Process: response to misfolded protein (GO:0051788);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: auxin influx (GO:0060919);; Biological Process: cell wall organization (GO:0071555);; "	K05658|0.0|vvi:100262262|hypothetical protein LOC100262262	ABC transporter B family member 1 GN=T1J8.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si013123m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	TPA: PGP1 [Zea mays]
comp210253_c0	3.83E-06	-2.751530792	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to stress (GO:0006950);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abiotic stimulus (GO:0009628);; Cellular Component: membrane (GO:0016020);; Biological Process: gene silencing (GO:0016458);; Biological Process: metal ion transport (GO:0030001);; Biological Process: histone lysine methylation (GO:0034968);; Biological Process: response to chemical stimulus (GO:0042221);; Molecular Function: ion binding (GO:0043167);; Cellular Component: intracellular organelle part (GO:0044446);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: floral organ formation (GO:0048449);; "	--	Heavy metal-associated isoprenylated plant protein 26 (Precursor) GN=F20M13.140 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=ZEAMMB73_738860 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_738860 [Zea mays]
comp220581_c0	0.004408152	-2.217508483	down	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Biological Process: response to chitin (GO:0010200);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: intracellular signal transduction (GO:0035556);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: metal ion binding (GO:0046872);; "	--	RING-H2 finger protein ATL39 GN=ATL39 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si008275m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Setaria italica]
comp226769_c1	0.003336609	1.862070692	up	[L]	Replication, recombination and repair 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: RNA-dependent DNA replication (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: proteolysis (GO:0006508);; Biological Process: DNA integration (GO:0015074);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: nickel cation binding (GO:0016151);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; "	--	"RNA-directed DNA polymerase homolog OS=Oenothera berteriana (Bertero's evening primrose) PE=4 SV=1"	Retrotransposon protein, putative, unclassified, expressed GN=LOC_Os12g24050 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
comp132171_c0	1.04E-10	3.403526578	up	--	--	--	--	--	Uncharacterized protein (Fragment) GN=Si012596m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101777639 [Setaria italica]
comp229093_c0	1.41E-12	5.937914977	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: mitochondrial envelope (GO:0005740);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolysis (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: water transport (GO:0006833);; Biological Process: hyperosmotic response (GO:0006972);; Biological Process: cytoskeleton organization (GO:0007010);; Biological Process: Golgi organization (GO:0007030);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to heat (GO:0009408);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: pollen development (GO:0009555);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: proteasomal protein catabolic process (GO:0010498);; Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: response to cadmium ion (GO:0046686);; Cellular Component: apoplast (GO:0048046);; Biological Process: seed development (GO:0048316);; Biological Process: tapetal layer development (GO:0048658);; Molecular Function: NADP binding (GO:0050661);; Biological Process: regulation of transport (GO:0051049);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: primary root development (GO:0080022);; Biological Process: amino acid homeostasis (GO:0080144);; "	K00134|1e-180|zma:100280944|glyceraldehyde-3-phosphate dehydrogenase, cytosolic	Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic GN=GAPC OS=Hordeum vulgare (Barley) PE=2 SV=1	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Zea mays (Maize) PE=2 SV=1	glyceraldehyde-3-phosphate dehydrogenase [Piriformospora indica] 
comp218405_c1	0.001064035	-2.303792647	down	--	--	"Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: regulation of meristem growth (GO:0010075);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si013491m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein IQ-DOMAIN 14-like [Setaria italica]
comp225784_c0	4.16E-06	2.574532024	up	[R]	General function prediction only 	"Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: integral to membrane (GO:0016021);; "	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: inactive rhomboid protein 1-like isoform X1 [Setaria italica]
comp390214_c0	5.12E-06	3.648041849	up	--	--	--	--	--	--	--
comp219223_c0	2.29E-11	3.514436371	up	--	--	"Biological Process: response to hypoxia (GO:0001666);; Molecular Function: oxygen transporter activity (GO:0005344);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: cell wall (GO:0005618);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: fatty acid metabolic process (GO:0006631);; Biological Process: nitrogen fixation (GO:0009399);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: oxygen transport (GO:0015671);; Cellular Component: nuclear matrix (GO:0016363);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; "	--	Non-symbiotic hemoglobin 2 GN=OSJNBa0081P02.19 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	cDNA clone:J033028N03, full insert sequence GN=OsJ_09991 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os03g0226200 [Oryza sativa Japonica Group] 
comp199811_c1	1.11E-08	-3.495500864	down	[E]	Amino acid transport and metabolism 	"Molecular Function: transporter activity (GO:0005215);; Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Biological Process: plant-type cell wall organization (GO:0009664);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to nitrate (GO:0010167);; Biological Process: lithium ion transport (GO:0010351);; Molecular Function: nitrate transmembrane transporter activity (GO:0015112);; Molecular Function: high affinity oligopeptide transporter activity (GO:0015334);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: protein import into peroxisome matrix (GO:0016558);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: dipeptide transporter activity (GO:0042936);; Molecular Function: tripeptide transporter activity (GO:0042937);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: tripeptide transport (GO:0042939);; Biological Process: response to leucine (GO:0043201);; Biological Process: cell wall macromolecule metabolic process (GO:0044036);; Biological Process: response to histidine (GO:0080052);; Biological Process: response to phenylalanine (GO:0080053);; Biological Process: abscisic acid transport (GO:0080168);; Molecular Function: abscisic acid transporter activity (GO:0090440);; "	--	Probable peptide/nitrate transporter At5g13400 GN=At5g13400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb02g031360 GN=Sb02g031360 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_02g031360 [Sorghum bicolor] 
comp217880_c0	2.57E-06	2.605155471	up	--	--	"Molecular Function: cysteamine dioxygenase activity (GO:0047800);; Biological Process: oxidation-reduction process (GO:0055114);; "	K10712|1e-145|sbi:SORBI_07g029100|hypothetical protein	--	Uncharacterized protein GN=Si014993m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: 2-aminoethanethiol dioxygenase-like [Setaria italica]
comp225283_c1	0.001399479	-2.448666604	down	--	--	"Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: retrograde vesicle-mediated transport, Golgi to ER (GO:0006890);; Cellular Component: membrane (GO:0016020);; Biological Process: maintenance of protein location (GO:0045185);; Biological Process: localization (GO:0051179);; "	--	Protein RER1C GN=RER1C OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: protein RER1A-like [Brachypodium distachyon]
comp184392_c0	0.002363769	-3.366032158	down	--	--	"Cellular Component: cytoplasm (GO:0005737);; "	--	--	Uncharacterized protein GN=ZEAMMB73_956123 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_956123 [Zea mays]
comp165172_c0	6.89E-13	4.056514485	up	--	--	"Biological Process: transcription, DNA-dependent (GO:0006351);; "	--	--	Uncharacterized protein GN=OB02G40600 OS=Oryza brachyantha PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp170987_c0	1.14E-05	3.559702237	up	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Molecular Function: protein dimerization activity (GO:0046983);; "	--	--	Uncharacterized protein GN=BRADI2G06320 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: zinc finger MYM-type protein 1-like [Setaria italica]
comp184231_c0	0.007951616	2.397623467	up	--	--	--	--	--	Uncharacterized protein GN=F775_11919 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_922865 [Zea mays]
comp196084_c1	0.008783474	-2.46544111	down	--	--	--	--	Novel plant SNARE 13 GN=NPSN13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Novel plant SNARE 11, putative, expressed GN=LOC_Os03g25390 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	TPA: hypothetical protein ZEAMMB73_213814 [Zea mays]
comp218835_c0	0.001404128	-2.017211575	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to salt stress (GO:0009651);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: reproductive structure development (GO:0048608);; "	K14432|1e-129|zma:100193967|hypothetical protein LOC100193967	bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si030114m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: bZIP transcription factor TRAB1-like [Setaria italica]
comp132618_c0	0.000968988	2.698419002	up	--	--	--	--	--	--	--
comp226583_c0	0.009538328	1.71256537	up	--	--	"Biological Process: regulation of cell growth (GO:0001558);; Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polysaccharide metabolic process (GO:0005976);; Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: anion transport (GO:0006820);; Biological Process: signal transduction (GO:0007165);; Biological Process: epidermis development (GO:0008544);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen development (GO:0009555);; Biological Process: response to fungus (GO:0009620);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: flower development (GO:0009908);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: regulation of meristem growth (GO:0010075);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: vesicle-mediated transport (GO:0016192);; Biological Process: phosphorylation (GO:0016310);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: developmental maturation (GO:0021700);; Biological Process: regulation of anatomical structure morphogenesis (GO:0022603);; Biological Process: cell differentiation (GO:0030154);; Biological Process: negative regulation of defense response (GO:0031348);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: response to lipid (GO:0033993);; Biological Process: cell wall modification (GO:0042545);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: small molecule biosynthetic process (GO:0044283);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: innate immune response (GO:0045087);; Biological Process: leaf development (GO:0048366);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: cell division (GO:0051301);; Biological Process: cellular localization (GO:0051641);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cellular response to organic cyclic compound (GO:0071407);; Biological Process: response to alcohol (GO:0097305);; Biological Process: regulation of reproductive process (GO:2000241);; "	--	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (Precursor) GN=At5g48380 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=TRIUR3_06204 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	hypothetical protein TRIUR3_06204 [Triticum urartu]
comp226952_c0	6.80E-09	3.099487109	up	--	--	--	--	--	Uncharacterized protein GN=Si023793m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_322961 [Zea mays]
comp230326_c1	0.002344445	-2.589276543	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Putative uncharacterized protein Sb04g025990 GN=Sb04g025990 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g025990 [Sorghum bicolor] 
comp222805_c0	0.00014577	3.435790535	up	--	--	"Molecular Function: transaminase activity (GO:0008483);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; "	K00830|8e-13|osa:4345962|Os08g0502700	Serine--glyoxylate aminotransferase GN=AGT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	cDNA clone:J013001P06, full insert sequence GN=Os08g0502700 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os08g0502700 [Oryza sativa Japonica Group] 
comp226139_c1	3.12E-05	-2.701309756	down	[D]	Cell cycle control, cell division, chromosome partitioning 	--	--	C-hordein (Fragment) OS=Hordeum vulgare (Barley) PE=2 SV=1	B3 hordein OS=Hordeum vulgare (Barley) PE=2 SV=1	B3 hordein [Hordeum vulgare]
comp231992_c0	0.000235502	2.190062469	up	[RTKL]	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: multicellular organismal development (GO:0007275);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: stomatal movement (GO:0010118);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Biological Process: basipetal auxin transport (GO:0010540);; Biological Process: mannitol biosynthetic process (GO:0019593);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: galactinol-sucrose galactosyltransferase activity (GO:0047274);; Biological Process: defense response to fungus (GO:0050832);; "	--	CBL-interacting protein kinase 14 GN=OsJ_031406 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si026369m.g OS=Setaria italica (Foxtail millet) PE=2 SV=1	uncharacterized protein LOC101758744 [Setaria italica] 
comp227458_c0	0.001563707	1.952374974	up	--	--	"Biological Process: response to stress (GO:0006950);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to hormone stimulus (GO:0009725);; "	--	Protein TIFY 9 GN=T31B5.40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI5G08650 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: protein TIFY 9-like [Brachypodium distachyon]
comp230287_c0	0.004189693	1.837733467	up	--	--	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si014229m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_835147 [Zea mays]
comp177045_c0	0.00877059	-3.600875188	down	--	--	--	--	--	--	--
comp208645_c0	7.23E-05	2.307045581	up	[M]	Cell wall/membrane/envelope biogenesis 	--	--	--	Putative uncharacterized protein (Fragment) GN=AURANDRAFT_70670 OS=Aureococcus anophagefferens (Harmful bloom alga) PE=4 SV=1	hypothetical protein AURANDRAFT_70670, partial [Aureococcus anophagefferens]
comp178106_c0	4.04E-05	3.594013462	up	[P]	Inorganic ion transport and metabolism 	"Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Molecular Function: cyanate hydratase activity (GO:0008824);; Biological Process: cyanate metabolic process (GO:0009439);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	K01725|5e-18|ppp:PHYPADRAFT_148136|hypothetical protein	Cyanate hydratase 1 GN=CYN1 OS=Populus trichocarpa (Western balsam poplar) PE=3 SV=1	Cyanate hydratase GN=CYN OS=Micromonas sp. (strain RCC299 / NOUM17) PE=3 SV=1	"RecName: Full=Cyanate hydratase; Short=Cyanase; AltName: Full=Cyanate hydrolase; AltName: Full=Cyanate lyase"
comp217387_c0	0.007067381	1.826802513	up	[U]	Intracellular trafficking, secretion, and vesicular transport 	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein transport (GO:0015031);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	K10956|0.0|sbi:SORBI_04g022600|hypothetical protein	Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1	Putative uncharacterized protein Sb04g022600 GN=Sb04g022600 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_04g022600 [Sorghum bicolor] 
comp216733_c0	0.001347284	2.008789669	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: iron ion binding (GO:0005506);; Biological Process: terpenoid metabolic process (GO:0006721);; Molecular Function: steroid hydroxylase activity (GO:0008395);; Biological Process: lipid biosynthetic process (GO:0008610);; Molecular Function: electron carrier activity (GO:0009055);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: brassinosteroid homeostasis (GO:0010268);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: brassinosteroid metabolic process (GO:0016131);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Biological Process: trans-zeatin biosynthetic process (GO:0033466);; Biological Process: regulation of growth (GO:0040008);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cytochrome P450 734A2 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si020132m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 734A2-like [Setaria italica]
comp209958_c0	0.005109401	1.978044336	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: methylation (GO:0032259);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	--	Probable methyltransferase PMT20 GN=At1g31850 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb01g027660 GN=Sb01g027660 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g027660 [Sorghum bicolor] 
comp221659_c0	0.004119232	1.820405099	up	--	--	"Cellular Component: plasmodesma (GO:0009506);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: secondary metabolite biosynthetic process (GO:0044550);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: response to stimulus (GO:0050896);; "	--	Blue copper protein (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1	Uncharacterized protein GN=BRADI4G32680 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: blue copper protein-like [Setaria italica]
comp222199_c0	8.17E-05	-2.859469623	down	--	--	--	--	--	--	RecName: Full=Sillucin
comp217250_c0	8.15E-06	2.476008939	up	--	--	"Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; "	--	Proline-rich receptor-like protein kinase PERK2 GN=PERK2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3	Putative uncharacterized protein GN=OsI_00250 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	hypothetical protein OsI_00250 [Oryza sativa Indica Group]
comp223667_c0	5.32E-07	2.715040259	up	--	--	"Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: RNA processing (GO:0006396);; Biological Process: circadian rhythm (GO:0007623);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: membrane (GO:0016020);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: response to karrikin (GO:0080167);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb02g031140 GN=Sb02g031140 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g031140 [Sorghum bicolor] 
comp209699_c1	1.23E-05	-3.195466762	down	--	--	"Molecular Function: zinc ion binding (GO:0008270);; "	--	RING-H2 finger protein ATL43 (Precursor) GN=ATL43 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Os06g0695900 protein GN=Os06g0695900 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=2	putative RING zinc finger domain superfamily protein [Zea mays]
comp228612_c0	0.000262728	2.125904187	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; "	--	--	Uncharacterized protein GN=Si036301m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g028450 [Sorghum bicolor] 
comp230863_c0	0.004351886	-1.922025493	down	[C]	Energy production and conversion 	"Biological Process: cellular aromatic compound metabolic process (GO:0006725);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: heterocycle metabolic process (GO:0046483);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: biological regulation (GO:0065007);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Reticuline oxidase (Precursor) GN=BBE1 OS=Papaver somniferum (Opium poppy) PE=3 SV=1	Uncharacterized protein GN=Si015778m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: reticuline oxidase-like [Setaria italica]
comp233392_c1	0.002349745	1.995199976	up	--	--	"Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: intracellular (GO:0005622);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: epidermal cell differentiation (GO:0009913);; Biological Process: response to inorganic substance (GO:0010035);; Biological Process: root development (GO:0048364);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: developmental growth (GO:0048589);; "	--	Protein TRANSPARENT TESTA 1 GN=TT1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si022296m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein TRANSPARENT TESTA 1-like [Setaria italica]
comp210929_c1	0.001147194	-2.43978489	down	--	--	"Biological Process: spliceosomal complex assembly (GO:0000245);; "	--	--	Putative uncharacterized protein Sb05g022560 GN=Sb05g022560 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g022560 [Sorghum bicolor] 
comp200018_c0	5.43E-06	2.81124349	up	--	--	--	--	--	Uncharacterized protein GN=Si037481m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	uncharacterized protein LOC100274922 [Zea mays] 
comp236409_c0	0.002147158	1.942978181	up	[R]	General function prediction only 	"Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to stress (GO:0006950);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: cellular response to stimulus (GO:0051716);; "	--	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 GN=OJ1019_E02.22 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb02g036840 GN=Sb02g036840 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g036840 [Sorghum bicolor] 
comp133231_c0	1.09E-05	3.09901608	up	--	--	--	--	--	Putative uncharacterized protein Sb04g028755 GN=Sb04g028755 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g028755 [Sorghum bicolor] 
comp223525_c0	2.28E-10	3.354630683	up	[T]	Signal transduction mechanisms 	--	--	--	Uncharacterized protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	PREDICTED: universal stress protein A-like protein-like [Setaria italica]
comp129977_c0	0.002699339	1.997460329	up	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein (Fragment) GN=Si012757m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101771686 [Setaria italica]
comp216850_c0	6.93E-06	2.638826425	up	--	--	--	--	Late embryogenesis abundant protein 1 OS=Cicer arietinum (Chickpea) PE=1 SV=1	Late embryogenesis abundant protein group 3 variant 1 GN=LEA3 OS=Pogonatherum paniceum PE=2 SV=1	late embryogenesis abundant protein group 3 variant 1 [Pogonatherum paniceum]
comp212515_c0	0.000649439	-2.130295928	down	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: mRNA transcription (GO:0009299);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: pollen development (GO:0009555);; Biological Process: anther dehiscence (GO:0009901);; Biological Process: response to chitin (GO:0010200);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: integral to plastid membrane (GO:0031351);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: root development (GO:0048364);; Biological Process: cell division (GO:0051301);; Biological Process: regulation of jasmonic acid biosynthetic process (GO:0080141);; "	--	RING-H2 finger protein ATL3 GN=ATL3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Os02g0248320 protein GN=Os02g0248320 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os02g0248320 [Oryza sativa Japonica Group] 
comp232412_c0	0.000459834	2.236700181	up	[G]	Carbohydrate transport and metabolism 	"Biological Process: transition metal ion transport (GO:0000041);; Molecular Function: trehalose-phosphatase activity (GO:0004805);; Biological Process: trehalose biosynthetic process (GO:0005992);; Biological Process: metabolic process (GO:0008152);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: response to stimulus (GO:0050896);; "	--	Probable trehalose-phosphate phosphatase 7 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si030171m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable trehalose-phosphate phosphatase 7-like [Setaria italica]
comp220005_c0	0.004059162	1.887114013	up	--	--	--	--	--	Uncharacterized protein GN=Si009035m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp198727_c1	1.45E-06	-2.904589391	down	--	--	"Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: meristem initiation (GO:0010014);; Biological Process: xylem development (GO:0010089);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: pectin biosynthetic process (GO:0045489);; Biological Process: xylan biosynthetic process (GO:0045492);; "	--	--	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	Os03g0291200 [Oryza sativa Japonica Group] 
comp226273_c1	0.000857936	2.588899599	up	[RTKL]	--	"Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: chloroplast (GO:0009507);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: programmed cell death (GO:0012501);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; "	--	Putative cysteine-rich receptor-like protein kinase 35 (Precursor) GN=CRK35 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=3	Putative uncharacterized protein Sb07g007770 GN=Sb07g007770 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_07g007770 [Sorghum bicolor] 
comp223979_c5	0.005861209	-2.280820788	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: pollen germination (GO:0009846);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Cellular Component: integral to Golgi membrane (GO:0030173);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: mannan synthase activity (GO:0051753);; "	K00770|1e-115|sbi:SORBI_08g017750|hypothetical protein	Cellulose synthase-like protein D4 GN=OsJ_035046 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si021011m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: LOW QUALITY PROTEIN: cellulose synthase-like protein D4-like [Setaria italica]
comp231138_c2	0.004812602	2.553235536	up	--	--	"Molecular Function: signal transducer activity (GO:0004871);; Biological Process: signal transduction (GO:0007165);; Cellular Component: membrane (GO:0016020);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein (Fragment) GN=OB02G20840 OS=Oryza brachyantha PE=4 SV=1	two-component histidine kinase [Cochliobolus heterostrophus]
comp212734_c0	0.007232252	1.810412746	up	[QR]	--	"Biological Process: RNA processing (GO:0006396);; Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: plastid (GO:0009536);; Biological Process: sterol biosynthetic process (GO:0016126);; Biological Process: methylation (GO:0032259);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: intracellular organelle part (GO:0044446);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si002575m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative methyltransferase DDB_G0268948-like [Setaria italica]
comp220874_c0	1.25E-08	-5.379751976	down	--	--	"Cellular Component: cell part (GO:0044464);; "	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Pathogenesis-related protein 1-like protein GN=VOLCADRAFT_127358 OS=Volvox carteri (Green alga) PE=4 SV=1	pathogenesis-related protein 1-like protein [Volvox carteri f. nagariensis] 
comp208755_c1	0	5.590220926	up	--	--	--	--	--	--	--
comp223163_c0	0.000358102	2.088968964	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: galactose metabolic process (GO:0006012);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: kinase activity (GO:0016301);; Biological Process: mannitol biosynthetic process (GO:0019593);; Molecular Function: galactinol-sucrose galactosyltransferase activity (GO:0047274);; "	--	Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp222970_c0	1.10E-05	2.517461041	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Biological Process: tryptophan catabolic process (GO:0006569);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: cellular response to nitrogen starvation (GO:0006995);; Cellular Component: chloroplast (GO:0009507);; Biological Process: detection of biotic stimulus (GO:0009595);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	Protein LURP-one-related 15 GN=At5g01750 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si037555m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein LURP-one-related 15-like [Setaria italica]
comp165074_c0	5.03E-10	4.381834123	up	--	--	"Molecular Function: binding (GO:0005488);; Biological Process: fatty acid metabolic process (GO:0006631);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: oxidoreductase activity (GO:0016491);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: metal ion binding (GO:0046872);; "	--	Cytochrome P450 86B1 GN=CYP86B1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si013630m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: cytochrome P450 86B1-like [Setaria italica]
comp176409_c0	0.000679896	2.093344841	up	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: response to karrikin (GO:0080167);; "	--	Cysteine-rich repeat secretory protein 55 (Precursor) GN=CRRSP55 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Serine/threonine kinase-like protein OS=Zea mays (Maize) PE=2 SV=1	serine/threonine kinase-like protein [Zea mays]
comp219230_c0	1.44E-13	3.873321063	up	[H]	Coenzyme transport and metabolism 	"Molecular Function: catalytic activity (GO:0003824);; Molecular Function: uroporphyrin-III C-methyltransferase activity (GO:0004851);; Biological Process: threonine catabolic process (GO:0006567);; Cellular Component: chloroplast (GO:0009507);; Biological Process: cellular process (GO:0009987);; Biological Process: siroheme biosynthetic process (GO:0019354);; Biological Process: methylation (GO:0032259);; Molecular Function: precorrin-2 dehydrogenase activity (GO:0043115);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: organic substance metabolic process (GO:0071704);; Cellular Component: cell periphery (GO:0071944);; "	--	Uroporphyrinogen-III C-methyltransferase GN=cobA OS=Cyanidium caldarium PE=3 SV=1	Uncharacterized protein GN=Si001666m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: uroporphyrinogen-III C-methyltransferase-like [Setaria italica]
comp199811_c0	1.54E-07	-3.214556936	down	--	--	"Molecular Function: transporter activity (GO:0005215);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to nematode (GO:0009624);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: regulation of stomatal movement (GO:0010119);; Molecular Function: nitrate transmembrane transporter activity (GO:0015112);; Molecular Function: high affinity oligopeptide transporter activity (GO:0015334);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: metal ion transport (GO:0030001);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: dipeptide transporter activity (GO:0042936);; Molecular Function: tripeptide transporter activity (GO:0042937);; Biological Process: dipeptide transport (GO:0042938);; Biological Process: tripeptide transport (GO:0042939);; Biological Process: response to leucine (GO:0043201);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: intracellular transport (GO:0046907);; Biological Process: organic substance metabolic process (GO:0071704);; Biological Process: response to histidine (GO:0080052);; Biological Process: response to phenylalanine (GO:0080053);; Biological Process: response to karrikin (GO:0080167);; Biological Process: abscisic acid transport (GO:0080168);; Molecular Function: abscisic acid transporter activity (GO:0090440);; Molecular Function: glucosinolate:hydrogen symporter activity (GO:0090448);; Biological Process: phloem glucosinolate loading (GO:0090449);; Biological Process: glucosinolate transport (GO:1901349);; "	--	Probable peptide/nitrate transporter At5g13400 GN=At5g13400 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb02g031360 GN=Sb02g031360 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_02g031360 [Sorghum bicolor] 
comp214679_c2	0.002170004	-3.843954585	down	--	--	"Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: external side of plasma membrane (GO:0009897);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of cell proliferation (GO:0042127);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Cellular Component: apoplast (GO:0048046);; Biological Process: mucilage metabolic process involved seed coat development (GO:0048359);; Biological Process: mucilage extrusion from seed coat (GO:0080001);; "	--	Subtilisin-like protease (Precursor) GN=K8K14.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si021287m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: subtilisin-like protease-like [Setaria italica]
comp223372_c0	0.001424697	-2.233209111	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein import into nucleus (GO:0006606);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: response to inorganic substance (GO:0010035);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: seed development (GO:0048316);; Biological Process: root development (GO:0048364);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: defense response to fungus (GO:0050832);; "	K09286|1e-148|zma:100273192|hypothetical protein LOC100273192	Ethylene-responsive transcription factor RAP2-11 GN=T29J13.210 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si030686m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Setaria italica]
comp227297_c0	0.00673317	-1.832728938	down	[E]	Amino acid transport and metabolism 	"Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays]
comp209371_c0	7.84E-05	-2.338977143	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Cellular Component: cell part (GO:0044464);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g007900 GN=Sb03g007900 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101780012 [Setaria italica]
comp222647_c0	0.003522075	1.833184797	up	[RTKL]	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell differentiation (GO:0030154);; Biological Process: root development (GO:0048364);; Biological Process: developmental growth (GO:0048589);; Cellular Component: cell periphery (GO:0071944);; "	--	Classical arabinogalactan protein 9 (Precursor) GN=AGP9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp226253_c0	0.007464998	-2.013853564	down	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	RING-H2 finger protein ATL46 GN=ATL46 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb02g023600 GN=Sb02g023600 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_02g023600 [Sorghum bicolor] 
comp231440_c0	0.000239173	2.223303096	up	[E]	Amino acid transport and metabolism 	"Molecular Function: aldo-keto reductase (NADP) activity (GO:0004033);; Molecular Function: glutamate dehydrogenase (NAD+) activity (GO:0004352);; Molecular Function: glutamate dehydrogenase [NAD(P)+] activity (GO:0004353);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: mitochondrial matrix (GO:0005759);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: polyamine catabolic process (GO:0006598);; Biological Process: cellular membrane fusion (GO:0006944);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: gamma-aminobutyric acid metabolic process (GO:0009448);; Biological Process: response to absence of light (GO:0009646);; Biological Process: response to salt stress (GO:0009651);; Biological Process: phenylpropanoid metabolic process (GO:0009698);; Molecular Function: L-galactose dehydrogenase activity (GO:0010349);; Biological Process: L-ascorbic acid biosynthetic process (GO:0019853);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: Golgi vesicle transport (GO:0048193);; Molecular Function: cobalt ion binding (GO:0050897);; Biological Process: regulation of nitrogen compound metabolic process (GO:0051171);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00261|0.0|sbi:SORBI_06g024150|hypothetical protein	Glutamate dehydrogenase 2 GN=GDH2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Glutamate dehydrogenase 2 GN=TRIUR3_18928 OS=Triticum urartu (Red wild einkorn) PE=4 SV=1	Glutamate dehydrogenase 2 [Triticum urartu]
comp231465_c0	0.000204125	2.271026138	up	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: response to stress (GO:0006950);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: cell tip growth (GO:0009932);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: root hair elongation (GO:0048767);; Biological Process: cell wall pectin metabolic process (GO:0052546);; "	--	Probable methyltransferase PMT26 GN=At5g64030 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si000354m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable methyltransferase PMT26-like [Setaria italica]
comp233939_c0	6.86E-05	-2.595820226	down	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch catabolic process (GO:0005983);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: meristem initiation (GO:0010014);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: procambium histogenesis (GO:0010067);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: xylem development (GO:0010089);; Biological Process: stomatal complex morphogenesis (GO:0010103);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: microsporocyte differentiation (GO:0010480);; Biological Process: regulation of hormone levels (GO:0010817);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: beta-amylase activity (GO:0016161);; Molecular Function: receptor serine/threonine kinase binding (GO:0033612);; Biological Process: response to lipid (GO:0033993);; Molecular Function: protein self-association (GO:0043621);; Biological Process: sulfur compound biosynthetic process (GO:0044272);; Biological Process: gametophyte development (GO:0048229);; Biological Process: flower morphogenesis (GO:0048439);; Biological Process: negative regulation of biological process (GO:0048519);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) GN=At4g26540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Os05g0169600 protein (Fragment) GN=Os05g0169600 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os05g0169600 [Oryza sativa Japonica Group] 
comp201028_c0	3.56E-05	2.330280222	up	--	--	--	--	Proline-rich receptor-like protein kinase PERK10 GN=PERK10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si003443m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	Os01g0888900 [Oryza sativa Japonica Group] 
comp122992_c0	3.72E-06	3.866327627	up	--	--	"Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: metabolic process (GO:0008152);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; Molecular Function: terpene synthase activity (GO:0010333);; Molecular Function: sesquiterpene synthase activity (GO:0010334);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Biological Process: terpene biosynthetic process (GO:0046246);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: myrcene synthase activity (GO:0050551);; Biological Process: response to other organism (GO:0051707);; "	--	Probable terpene synthase 13 GN=TPS13 OS=Ricinus communis (Castor bean) PE=3 SV=1	Putative uncharacterized protein Sb04g001770 GN=Sb04g001770 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_04g001770 [Sorghum bicolor] 
comp232461_c1	4.02E-06	-2.700593035	down	--	--	"Biological Process: cell morphogenesis (GO:0000902);; Cellular Component: cell wall (GO:0005618);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: cell growth (GO:0016049);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: cell development (GO:0048468);; Biological Process: reproductive structure development (GO:0048608);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; "	--	Glycine-rich cell wall structural protein (Precursor) GN=At3g17050 OS=Arabidopsis thaliana (Mouse-ear cress) PE=4 SV=2	Pherophorin-dz1 protein (Precursor) OS=Volvox carteri f. nagariensis PE=2 SV=1	TPA: hypothetical protein ZEAMMB73_714647 [Zea mays]
comp132410_c0	0.0004733	2.077726056	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Cellular Component: vacuole (GO:0005773);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein targeting to membrane (GO:0006612);; Cellular Component: plastid (GO:0009536);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: chlorophyll catabolic process (GO:0015996);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: defense response to bacterium (GO:0042742);; Molecular Function: chlorophyllase activity (GO:0047746);; Biological Process: defense response to fungus (GO:0050832);; "	--	Chlorophyllase-1 GN=F6F9.28 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si030252m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_331237 [Zea mays]
comp222933_c0	0.000691253	2.138683717	up	--	--	--	--	--	Putative uncharacterized protein (Fragment) OS=Glycine max (Soybean) PE=2 SV=1	--
comp195260_c0	0.002194356	1.886928251	up	[IR]	--	"Molecular Function: diacylglycerol kinase activity (GO:0004143);; Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway (GO:0007205);; Biological Process: response to cold (GO:0009409);; Biological Process: response to wounding (GO:0009611);; Biological Process: phosphorylation (GO:0016310);; Biological Process: intracellular signal transduction (GO:0035556);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: Golgi vesicle transport (GO:0048193);; Biological Process: leaf development (GO:0048366);; Biological Process: lateral root development (GO:0048527);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: cellular response to stimulus (GO:0051716);; "	K00901|0.0|sbi:SORBI_01g032250|hypothetical protein	Diacylglycerol kinase 1 GN=DGK1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Putative uncharacterized protein Sb01g032250 GN=Sb01g032250 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g032250 [Sorghum bicolor] 
comp217348_c0	1.27E-09	3.251827634	up	--	--	"Molecular Function: iron ion binding (GO:0005506);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to wounding (GO:0009611);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: response to red light (GO:0010114);; Biological Process: hydrogen peroxide-mediated programmed cell death (GO:0010421);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: gibberellin 3-beta-dioxygenase activity (GO:0016707);; Biological Process: gibberellin catabolic process (GO:0045487);; Molecular Function: gibberellin 20-oxidase activity (GO:0045544);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634);; Molecular Function: C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Gibberellin 2-beta-dioxygenase 1 GN=GA2OX1 OS=Pisum sativum (Garden pea) PE=1 SV=1	Putative uncharacterized protein Sb03g002150 GN=Sb03g002150 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_03g002150 [Sorghum bicolor] 
comp211169_c1	0.00113483	3.160235434	up	--	--	"Cellular Component: cell part (GO:0044464);; "	--	Leucine-rich repeat extensin-like protein 2 (Precursor) GN=LRX2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=PGSC0003DMG400041724 OS=Solanum tuberosum (Potato) PE=4 SV=1	Protease-1 (PRT1), fragment, putative [Pneumocystis carinii]
comp128418_c0	0.000152772	-3.771711761	down	--	--	"Molecular Function: ubiquitin-protein ligase activity (GO:0004842);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to salt stress (GO:0009651);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: embryo development (GO:0009790);; Biological Process: response to chitin (GO:0010200);; Biological Process: heat acclimation (GO:0010286);; Biological Process: proline transport (GO:0015824);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: regulation of response to osmotic stress (GO:0047484);; Biological Process: root development (GO:0048364);; Biological Process: cell division (GO:0051301);; "	--	E3 ubiquitin-protein ligase RHA1B GN=RHA1B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si040008m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Setaria italica]
comp230871_c0	2.91E-06	2.586089476	up	[P]	Inorganic ion transport and metabolism 	"Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: voltage-gated chloride channel activity (GO:0005247);; Cellular Component: nucleus (GO:0005634);; Biological Process: chloride transport (GO:0006821);; Molecular Function: nitrate:hydrogen symporter activity (GO:0009671);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; Molecular Function: adenyl nucleotide binding (GO:0030554);; Cellular Component: cytoplasmic vesicle (GO:0031410);; Biological Process: transmembrane transport (GO:0055085);; "	--	Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=4 SV=1	PREDICTED: putative chloride channel-like protein CLC-g-like [Setaria italica]
comp196804_c0	0.000236383	-2.558913707	down	--	--	--	--	Vegetative cell wall protein gp1 (Precursor) GN=GP1 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=2 SV=1	Uncharacterized protein GN=Si026085m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: BEL1-like homeodomain protein 1-like isoform X1 [Setaria italica] 
comp231679_c0	1.39E-05	-2.762210406	down	[RTKL]	--	"Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: water transport (GO:0006833);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to nutrient (GO:0007584);; Biological Process: response to cold (GO:0009409);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: cytokinin biosynthetic process (GO:0009691);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to fructose stimulus (GO:0009750);; Biological Process: plant-type cell wall modification (GO:0009827);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: potassium ion import (GO:0010107);; Biological Process: stomatal movement (GO:0010118);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: galactolipid biosynthetic process (GO:0019375);; Biological Process: calcium-mediated signaling (GO:0019722);; Biological Process: cellular cation homeostasis (GO:0030003);; Biological Process: cellular response to water deprivation (GO:0042631);; Biological Process: divalent metal ion transport (GO:0070838);; "	--	CBL-interacting protein kinase 4 GN=CIPK4 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si022090m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: CBL-interacting protein kinase 4-like [Setaria italica]
comp131769_c0	0.000171146	2.177826115	up	--	--	"Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: cell wall (GO:0005618);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to fungus (GO:0009620);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: tissue development (GO:0009888);; Biological Process: shoot morphogenesis (GO:0010016);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: response to lipid (GO:0033993);; Biological Process: growth (GO:0040007);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: floral organ development (GO:0048437);; Biological Process: floral whorl development (GO:0048438);; Biological Process: phyllome development (GO:0048827);; Biological Process: cell wall organization (GO:0071555);; Biological Process: regulation of multicellular organismal development (GO:2000026);; "	--	Polygalacturonase inhibitor (Precursor) GN=PGIP OS=Pyrus communis (Pear) PE=1 SV=1	Putative uncharacterized protein Sb01g031930 GN=Sb01g031930 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g031930 [Sorghum bicolor] 
comp230040_c1	6.57E-06	2.538006272	up	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: response to salt stress (GO:0009651);; Biological Process: pollen germination (GO:0009846);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Cellular Component: integral to Golgi membrane (GO:0030173);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: root hair elongation (GO:0048767);; Molecular Function: mannan synthase activity (GO:0051753);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; "	--	Mixed-linked glucan synthase 4 GN=P0013G11.11 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Uncharacterized protein GN=Si028885m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: mixed-linked glucan synthase 4-like [Setaria italica]
comp223979_c3	0.00314242	-2.098964389	down	--	--	"Cellular Component: Golgi membrane (GO:0000139);; Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: response to osmotic stress (GO:0006970);; Cellular Component: plastid (GO:0009536);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: response to organic substance (GO:0010033);; Cellular Component: membrane (GO:0016020);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: cellulose synthase activity (GO:0016759);; Biological Process: response to chemical stimulus (GO:0042221);; Biological Process: cell wall biogenesis (GO:0042546);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; Molecular Function: glucosyltransferase activity (GO:0046527);; Biological Process: shoot development (GO:0048367);; Biological Process: organ development (GO:0048513);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: cellular response to stimulus (GO:0051716);; Biological Process: plant-type cell wall organization or biogenesis (GO:0071669);; Biological Process: nucleic acid metabolic process (GO:0090304);; "	K00770|1e-119|sbi:SORBI_08g017750|hypothetical protein	Cellulose synthase-like protein D4 GN=OsJ_035046 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative cellulose synthase-like family protein GN=ZEAMMB73_398894 OS=Zea mays (Maize) PE=4 SV=1	PREDICTED: LOW QUALITY PROTEIN: cellulose synthase-like protein D4-like [Setaria italica]
comp224976_c0	0.000728592	-2.579803517	down	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: cellular process (GO:0009987);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: primary metabolic process (GO:0044238);; Cellular Component: cell part (GO:0044464);; "	--	Extensin (Precursor) GN=HRGP OS=Sorghum bicolor (Sorghum) PE=3 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	hypothetical protein [Zea mays] 
comp199234_c0	0.006133771	-3.665591194	down	--	--	--	--	--	Putative uncharacterized protein Sb09g029300 GN=Sb09g029300 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g029300 [Sorghum bicolor] 
comp218176_c0	3.24E-07	3.515651299	up	[K]	Transcription 	"Molecular Function: plastid sigma factor activity (GO:0001053);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Molecular Function: protein binding (GO:0005515);; Biological Process: RNA processing (GO:0006396);; Biological Process: phosphate-containing compound metabolic process (GO:0006796);; Biological Process: response to stress (GO:0006950);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to red or far red light (GO:0009639);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: response to organic substance (GO:0010033);; Biological Process: photosynthesis (GO:0015979);; Biological Process: posttranscriptional gene silencing (GO:0016441);; Biological Process: gene silencing by RNA (GO:0031047);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: ncRNA metabolic process (GO:0034660);; Biological Process: cellular component biogenesis (GO:0044085);; Biological Process: small molecule metabolic process (GO:0044281);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: organ development (GO:0048513);; Biological Process: establishment of localization (GO:0051234);; Biological Process: cellular response to blue light (GO:0071483);; Biological Process: seedling development (GO:0090351);; Biological Process: organophosphate biosynthetic process (GO:0090407);; "	K03086|1e-66|olu:OSTLU_41331|hypothetical protein	RNA polymerase sigma factor sigB (Precursor) GN=At1g08540 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Predicted protein GN=OSTLU_41331 OS=Ostreococcus lucimarinus (strain CCE9901) PE=4 SV=1	RNA polymerase sigma factor [Paulinella chromatophora] 
comp229449_c0	0.005095557	1.833497093	up	--	--	--	--	--	Putative uncharacterized protein GN=OsJ_22155 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein OsJ_22155 [Oryza sativa Japonica Group]
comp124450_c0	4.45E-05	4.239739206	up	--	--	--	--	--	--	--
comp221890_c0	9.00E-05	2.238557349	up	[F]	Nucleotide transport and metabolism 	"Biological Process: glutamine metabolic process (GO:0006541);; Molecular Function: transferase activity (GO:0016740);; "	--	--	Uncharacterized protein GN=Si037008m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: putative glutamine amidotransferase-like protein C13C5.04-like [Setaria italica]
comp211757_c0	0.000393523	-2.385487672	down	--	--	--	--	--	Putative uncharacterized protein Sb08g020930 GN=Sb08g020930 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_08g020930 [Sorghum bicolor] 
comp229004_c1	6.42E-05	-2.36508377	down	--	--	"Molecular Function: carboxylesterase activity (GO:0004091);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: defense response (GO:0006952);; Biological Process: metabolic process (GO:0008152);; Biological Process: cell death (GO:0008219);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: positive regulation of gibberellic acid mediated signaling pathway (GO:0009939);; Biological Process: raffinose family oligosaccharide biosynthetic process (GO:0010325);; Molecular Function: gibberellin binding (GO:0010331);; Biological Process: floral organ morphogenesis (GO:0048444);; Biological Process: organic substance transport (GO:0071702);; "	--	Probable carboxylesterase 18 GN=CXE18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Putative uncharacterized protein Sb05g007290 GN=Sb05g007290 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_05g007290 [Sorghum bicolor] 
comp205992_c0	0.00302673	1.859429777	up	--	--	--	--	--	Predicted protein (Fragment) GN=CHLREDRAFT_153826 OS=Chlamydomonas reinhardtii (Chlamydomonas smithii) PE=4 SV=1	hypothetical protein CHLREDRAFT_153826 [Chlamydomonas reinhardtii] 
comp164313_c0	0.004555189	-2.006420579	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; "	--	Probable carbohydrate esterase At4g34215 GN=At4g34215 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si018083m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable carbohydrate esterase At4g34215-like [Setaria italica]
comp277804_c0	2.01E-06	-3.398188941	down	--	--	--	--	--	--	--
comp201634_c0	0.002980729	-2.739408769	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: steroid hormone receptor activity (GO:0003707);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: steroid hormone mediated signaling pathway (GO:0043401);; "	--	Uncharacterized membrane protein At3g27390 GN=At3g27390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=BRADI3G47827 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: uncharacterized membrane protein At3g27390-like [Setaria italica]
comp291780_c0	1.27E-06	4.243969783	up	--	--	--	--	--	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp218818_c1	1.32E-07	3.354166961	up	--	--	"Molecular Function: anion channel activity (GO:0005253);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to aluminum ion (GO:0010044);; Biological Process: stomatal movement (GO:0010118);; Cellular Component: endomembrane system (GO:0012505);; Molecular Function: malate transmembrane transporter activity (GO:0015140);; Biological Process: malate transport (GO:0015743);; Cellular Component: integral to membrane (GO:0016021);; "	--	Aluminum-activated malate transporter 1 GN=ALMT1 OS=Triticum aestivum (Wheat) PE=1 SV=1	Uncharacterized protein GN=BRADI5G09690 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: aluminum-activated malate transporter 1-like [Brachypodium distachyon]
comp164087_c0	0.000474055	2.420031632	up	--	--	"Cellular Component: plastid (GO:0009536);; Biological Process: proton transport (GO:0015992);; Molecular Function: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances (GO:0016820);; Cellular Component: macromolecular complex (GO:0032991);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: membrane part (GO:0044425);; Biological Process: ATP metabolic process (GO:0046034);; "	--	--	Unknow protein GN=P0496H07.14 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	unknow protein [Oryza sativa Japonica Group]
comp230832_c1	8.34E-10	3.235387928	up	--	--	"Biological Process: transition metal ion transport (GO:0000041);; Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleolus (GO:0005730);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: nitric oxide mediated signal transduction (GO:0007263);; Biological Process: cellular response to starvation (GO:0009267);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: pollen development (GO:0009555);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: inorganic anion transport (GO:0015698);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: regulation of DNA-dependent transcription in response to stress (GO:0043620);; Biological Process: regulation of innate immune response (GO:0045088);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: lateral root development (GO:0048527);; "	--	Probable WRKY transcription factor 53 GN=WRKY53 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si008812m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101764723 [Setaria italica]
comp228293_c0	0.003928183	-1.931903413	down	[GEPR]	--	"Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: seed germination (GO:0009845);; Molecular Function: solute:hydrogen symporter activity (GO:0015295);; Biological Process: monosaccharide transport (GO:0015749);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: positive regulation of post-embryonic development (GO:0048582);; Molecular Function: sugar transmembrane transporter activity (GO:0051119);; Biological Process: transmembrane transport (GO:0055085);; Cellular Component: pollen tube (GO:0090406);; "	--	Polyol transporter 5 GN=PLT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si026294m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: polyol transporter 5-like [Setaria italica]
comp219118_c1	0.004842482	1.793482093	up	[IQR]	--	"Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Molecular Function: alcohol dehydrogenase (NADP+) activity (GO:0008106);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: menthol biosynthetic process (GO:0031525);; Biological Process: terpene metabolic process (GO:0042214);; Molecular Function: (+)-neomenthol dehydrogenase activity (GO:0047501);; Molecular Function: (-)-menthol dehydrogenase activity (GO:0047504);; Molecular Function: (-)-isopiperitenone reductase activity (GO:0052581);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: NADPH binding (GO:0070402);; Biological Process: response to karrikin (GO:0080167);; "	--	Short-chain dehydrogenase/reductase 2b GN=F27D4.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si011437m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: (+)-neomenthol dehydrogenase-like [Setaria italica]
comp143876_c0	3.36E-05	-3.686834117	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; Biological Process: cellular component organization (GO:0016043);; Biological Process: anatomical structure development (GO:0048856);; Cellular Component: cell periphery (GO:0071944);; "	--	Formin-like protein 3 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein (Fragment) GN=Si040063m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101763772 [Setaria italica]
comp206017_c0	0.00748211	1.826336779	up	[I]	Lipid transport and metabolism 	"Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: coenzyme A metabolic process (GO:0015936);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: triterpenoid biosynthetic process (GO:0016104);; Biological Process: sterol biosynthetic process (GO:0016126);; Cellular Component: mitochondrial membrane (GO:0031966);; Cellular Component: plastid membrane (GO:0042170);; Molecular Function: hydroxymethylglutaryl-CoA reductase activity (GO:0042282);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00021|0.0|sbi:SORBI_04g030030|hypothetical protein	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 GN=HMG1 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si019865m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Setaria italica]
comp215073_c0	0.000809158	2.654056435	up	--	--	--	--	--	Uncharacterized protein GN=Si002732m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101782049 [Setaria italica]
comp164546_c0	0.008605348	-2.388164645	down	--	--	"Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: metabolic process (GO:0008152);; Molecular Function: O-acyltransferase activity (GO:0008374);; Biological Process: macromolecule biosynthetic process (GO:0009059);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Biological Process: cellular component organization (GO:0016043);; Biological Process: cell growth (GO:0016049);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: organ development (GO:0048513);; Biological Process: developmental growth (GO:0048589);; Biological Process: regulation of biological quality (GO:0065008);; "	K13508|1e-45|sbi:SORBI_09g022430|hypothetical protein	Glycerol-3-phosphate 2-O-acyltransferase 6 GN=GPAT6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si021782m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: glycerol-3-phosphate acyltransferase 5-like [Setaria italica]
comp129972_c0	0.009464525	1.924184666	up	--	--	"Biological Process: tryptophan biosynthetic process (GO:0000162);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048);; Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: protein N-linked glycosylation (GO:0006487);; Biological Process: tryptophan catabolic process (GO:0006569);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to salt stress (GO:0009651);; Biological Process: indoleacetic acid biosynthetic process (GO:0009684);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: localization (GO:0051179);; "	--	Chitin-inducible gibberellin-responsive protein 1 GN=P0006G05.102 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb02g035680 GN=Sb02g035680 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like [Setaria italica]
comp164192_c0	2.00E-06	2.908900125	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Cellular Component: ribosome (GO:0005840);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: translation (GO:0006412);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Molecular Function: metal ion binding (GO:0046872);; "	--	Ubiquitin (Precursor) OS=Triticum aestivum (Wheat) PE=3 SV=2	Ubiquitin 10 (Fragment) GN=UBQ10 OS=Echinochloa phyllopogon PE=2 SV=1	ubiquitin [Phanerochaete chrysosporium]
comp227100_c0	5.75E-05	2.335163265	up	[O]	Posttranslational modification, protein turnover, chaperones 	--	--	Chaperone protein dnaJ 49 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si007065m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101760953 isoform X2 [Setaria italica]
comp197879_c0	0.004181162	1.97404911	up	--	--	--	--	CYSTM1 family protein A GN=At2g41420 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Uncharacterized protein GN=Si014815m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: CYSTM1 family protein A-like [Setaria italica]
comp187192_c0	0.006325101	1.762241342	up	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: cold acclimation (GO:0009631);; "	--	Dehydration-responsive element-binding protein 1A GN=OSJNOa273B05.11 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si030998m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: dehydration-responsive element-binding protein 1A-like [Setaria italica]
comp228188_c1	5.31E-05	2.459331	up	[T]	Signal transduction mechanisms 	"Biological Process: developmental process involved in reproduction (GO:0003006);; Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: metabolic process (GO:0008152);; Cellular Component: plastid (GO:0009536);; Biological Process: response to fungus (GO:0009620);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: stomatal lineage progression (GO:0010440);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: interspecies interaction between organisms (GO:0044419);; Cellular Component: apoplast (GO:0048046);; "	--	Probable protein phosphatase 2C 77 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Uncharacterized protein GN=Si010194m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: probable protein phosphatase 2C 77-like [Setaria italica]
comp171479_c0	0.006963498	-2.737393413	down	[M]	Cell wall/membrane/envelope biogenesis 	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of actin filament polymerization (GO:0030833);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: negative regulation of biological process (GO:0048519);; Cellular Component: cell periphery (GO:0071944);; "	--	CASP-like protein Sb04g002820 GN=Sb04g002820 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	G2-like transcription factor (Fragment) OS=Zea mays subsp. mays (maize) PE=2 SV=1	PREDICTED: transcription activator GLK2-like [Setaria italica]
comp200396_c0	1.50E-05	3.529011327	up	--	--	"Biological Process: unidimensional cell growth (GO:0009826);; Cellular Component: membrane (GO:0016020);; Biological Process: cell differentiation (GO:0030154);; Cellular Component: cell part (GO:0044464);; Biological Process: cellular process involved in reproduction (GO:0048610);; Biological Process: pollen tube development (GO:0048868);; "	--	Putative membrane protein ycf1 GN=ycf1-B OS=Cucumis sativus (Cucumber) PE=3 SV=2	Uncharacterized protein OS=Phytophthora ramorum (Sudden oak death agent) PE=4 SV=1	elicitin-like protein RAL1A [Phytophthora ramorum]
comp225262_c0	1.84E-05	-2.598138596	down	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: sulfate transport (GO:0008272);; Biological Process: DNA mediated transformation (GO:0009294);; Biological Process: response to xenobiotic stimulus (GO:0009410);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: positive regulation of metabolic process (GO:0009893);; Biological Process: cellular response to sulfate starvation (GO:0009970);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: cellular response to hormone stimulus (GO:0032870);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of cell differentiation (GO:0045596);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: regulation of post-embryonic development (GO:0048580);; Molecular Function: mitogen-activated protein kinase binding (GO:0051019);; Biological Process: nuclear import (GO:0051170);; Biological Process: cellular response to glucose stimulus (GO:0071333);; Biological Process: cellular response to lipid (GO:0071396);; "	--	Transcription factor RF2b GN=RF2b OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=Si002546m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: transcription factor RF2b-like [Setaria italica]
comp209577_c0	7.22E-06	-3.256351287	down	--	--	--	--	--	Uncharacterized protein GN=OB06G32790 OS=Oryza brachyantha PE=4 SV=1	Os06g0683000 [Oryza sativa Japonica Group] 
comp216991_c0	6.62E-13	3.80661093	up	--	--	--	--	--	--	"RecName: Full=Metallothionein; Short=MT "
comp235515_c0	2.97E-06	2.631906082	up	--	--	"Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: nitrogen compound metabolic process (GO:0006807);; Biological Process: defense response (GO:0006952);; Biological Process: macromolecule catabolic process (GO:0009057);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: xylan catabolic process (GO:0045493);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Xylanase inhibitor protein 1 (Precursor) GN=XIPI OS=Triticum aestivum (Wheat) PE=1 SV=2	Uncharacterized protein OS=Oryza glaberrima (African rice) PE=3 SV=1	PREDICTED: xylanase inhibitor protein 1-like [Setaria italica]
comp181643_c0	0.000806659	-4.002673033	down	--	--	"Molecular Function: catalytic activity (GO:0003824);; "	--	--	Putative uncharacterized protein Sb05g007150 GN=Sb05g007150 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_05g007150 [Sorghum bicolor] 
comp214005_c0	3.27E-07	2.791570383	up	[S]	Function unknown 	"Molecular Function: nucleotide binding (GO:0000166);; Biological Process: immune response-regulating signaling pathway (GO:0002764);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cellular protein modification process (GO:0006464);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: epidermis development (GO:0008544);; Biological Process: pollen development (GO:0009555);; Biological Process: plant-type hypersensitive response (GO:0009626);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: embryo development (GO:0009790);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: defense response signaling pathway, resistance gene-independent (GO:0010204);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: regulation of cell death (GO:0010941);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: cell growth (GO:0016049);; Biological Process: vesicle-mediated transport (GO:0016192);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transmembrane receptor protein kinase activity (GO:0019199);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: cellular component morphogenesis (GO:0032989);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: cellular biosynthetic process (GO:0044249);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: intracellular transport (GO:0046907);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: tapetal cell differentiation (GO:0048657);; Biological Process: developmental growth involved in morphogenesis (GO:0060560);; Biological Process: cellular macromolecule localization (GO:0070727);; Biological Process: cellular response to organic cyclic compound (GO:0071407);; Biological Process: cell wall organization (GO:0071555);; Biological Process: organic substance transport (GO:0071702);; "	--	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) GN=At3g47570 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative LRR receptor-like serine/threonine-protein kinase GN=F775_16229 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Setaria italica]
comp206278_c0	8.28E-08	2.927762941	up	[T]	Signal transduction mechanisms 	"Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	Cortical cell-delineating protein (Precursor) OS=Zea mays (Maize) PE=2 SV=1	Putative uncharacterized protein Sb01g009990 GN=Sb01g009990 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_01g009990 [Sorghum bicolor] 
comp230488_c2	3.58E-06	-2.792102033	down	[O]	Posttranslational modification, protein turnover, chaperones 	--	K11838|2e-09|ppp:PHYPADRAFT_187320|hypothetical protein	Ubiquitin carboxyl-terminal hydrolase 13 GN=UBP13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Ubiquitin carboxyl-terminal hydrolase GN=PYU1_G003212 OS=Pythium ultimum PE=3 SV=1	YALI0D16335p [Yarrowia lipolytica] 
comp204226_c0	1.18E-05	2.646979714	up	[Q]	Secondary metabolites biosynthesis, transport and catabolism 	"Molecular Function: urate oxidase activity (GO:0004846);; Cellular Component: peroxisome (GO:0005777);; Biological Process: purine nucleobase metabolic process (GO:0006144);; Biological Process: urate catabolic process (GO:0019628);; Biological Process: oxidation-reduction process (GO:0055114);; "	K00365|5e-64|ppp:PHYPADRAFT_143855|hypothetical protein	Uricase GN=At2g26230 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uricase GN=PYU1_G001757 OS=Pythium ultimum PE=3 SV=1	urate oxidase [Phytophthora parasitica]
comp218199_c1	1.39E-07	3.763050377	up	--	--	"Biological Process: response to stress (GO:0006950);; "	--	--	Uncharacterized protein GN=F775_00737 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	hypothetical protein F775_00737 [Aegilops tauschii]
comp233077_c0	0.000193636	-2.315207699	down	--	--	"Molecular Function: O-acyltransferase activity (GO:0008374);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Cellular Component: membrane (GO:0016020);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular biosynthetic process (GO:0044249);; "	--	Shikimate O-hydroxycinnamoyltransferase GN=HST OS=Nicotiana tabacum (Common tobacco) PE=1 SV=1	Uncharacterized protein GN=Si012791m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: shikimate O-hydroxycinnamoyltransferase-like [Setaria italica]
comp234260_c0	4.89E-09	5.226802055	up	--	--	--	--	--	Putative uncharacterized protein Sb09g007405 (Fragment) GN=Sb09g007405 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g007405 [Sorghum bicolor] 
comp235386_c0	0.007271142	1.779356226	up	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Molecular Function: organic cyclic compound binding (GO:0097159);; "	--	Endonuclease OS=Nicotiana tabacum (Common tobacco) PE=2 SV=1	UDP-glucose:glycoprotein glucosyltransferase 1 GN=F775_04343 OS=Aegilops tauschii (Tausch's goatgrass) PE=4 SV=1	UDP-glucose:glycoprotein glucosyltransferase 1 [Aegilops tauschii]
comp231079_c5	0.001558903	-2.054544569	down	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: trichoblast differentiation (GO:0010054);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: heme binding (GO:0020037);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to hypoxia (GO:0071456);; "	--	Peroxidase 5 (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=2	Uncharacterized protein GN=Si036635m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: peroxidase 5-like [Setaria italica]
comp130023_c0	0.000292515	2.13655923	up	--	--	"Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Biological Process: fatty acid catabolic process (GO:0009062);; Cellular Component: chloroplast (GO:0009507);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: positive regulation of abscisic acid mediated signaling pathway (GO:0009789);; Biological Process: regulation of seed germination (GO:0010029);; Molecular Function: abscisic acid binding (GO:0010427);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; "	--	Abscisic acid receptor PYL2 GN=T19L18.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si018378m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: abscisic acid receptor PYL2-like isoform X1 [Setaria italica]
comp222479_c0	0.006042458	2.230696834	up	[J]	Translation, ribosomal structure and biogenesis 	"Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175);; Biological Process: mitochondrial RNA catabolic process (GO:0000957);; Biological Process: mitochondrial RNA processing (GO:0000963);; Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654);; Molecular Function: binding (GO:0005488);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0010323);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Biological Process: mRNA metabolic process (GO:0016071);; Biological Process: carotene biosynthetic process (GO:0016120);; Biological Process: xanthophyll biosynthetic process (GO:0016123);; Biological Process: chloroplast RNA processing (GO:0031425);; "	--	30S ribosomal protein S1, chloroplastic (Precursor) GN=RPS1 OS=Spinacia oleracea (Spinach) PE=1 SV=1	Putative uncharacterized protein GN=OsJ_30517 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein OsJ_30517 [Oryza sativa Japonica Group]
comp124324_c0	0.00176844	-3.412133807	down	--	--	--	--	--	Uncharacterized protein GN=Gasu_05410 OS=Galdieria sulphuraria (Red alga) PE=4 SV=1	hypothetical protein Gasu_05410 [Galdieria sulphuraria]
comp223939_c0	0.000111943	2.510028974	up	--	--	"Biological Process: MAPK cascade (GO:0000165);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: nitric oxide mediated signal transduction (GO:0007263);; Biological Process: response to cold (GO:0009409);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to wounding (GO:0009611);; Biological Process: virus induced gene silencing (GO:0009616);; Biological Process: salicylic acid biosynthetic process (GO:0009697);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: pollen germination (GO:0009846);; Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: response to 1-aminocyclopropane-1-carboxylic acid (GO:0009961);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: leaf senescence (GO:0010150);; Biological Process: response to ozone (GO:0010193);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of hydrogen peroxide metabolic process (GO:0010310);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: detection of bacterium (GO:0016045);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: response to endoplasmic reticulum stress (GO:0034976);; Biological Process: regulation of protein dephosphorylation (GO:0035304);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: regulation of multi-organism process (GO:0043900);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: defense response to fungus (GO:0050832);; "	--	Probable WRKY transcription factor 38 GN=WRKY38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g038170 GN=Sb03g038170 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g038170 [Sorghum bicolor] 
comp226561_c0	0.008719251	-1.877163359	down	--	--	"Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: N-acyltransferase activity (GO:0016410);; Molecular Function: O-acetyltransferase activity (GO:0016413);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: cellular nitrogen compound metabolic process (GO:0034641);; Biological Process: primary metabolic process (GO:0044238);; Molecular Function: hydroxycinnamoyltransferase activity (GO:0050734);; "	--	10-deacetylbaccatin III 10-O-acetyltransferase OS=Taxus cuspidata (Japanese yew) PE=1 SV=1	Putative uncharacterized protein Sb09g005680 GN=Sb09g005680 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_09g005680 [Sorghum bicolor] 
comp229782_c0	0.006435837	-1.900268705	down	[U]	Intracellular trafficking, secretion, and vesicular transport 	--	--	Formin-like protein 5 GN=P0453E05.107 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si037850m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: formin-like protein 18-like [Setaria italica]
comp231687_c0	5.82E-09	4.779372999	up	--	--	--	--	--	Putative uncharacterized protein OJ1124_B05.17 GN=OJ1124_B05.17 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein [Oryza sativa Japonica Group] 
comp167481_c0	1.22E-06	-2.817489528	down	[GEPR]	--	"Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to nematode (GO:0009624);; Biological Process: gravitropism (GO:0009630);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: response to zinc ion (GO:0010043);; Biological Process: basipetal auxin transport (GO:0010540);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: potassium ion antiporter activity (GO:0022821);; Biological Process: root development (GO:0048364);; Biological Process: zinc ion homeostasis (GO:0055069);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of stomatal closure (GO:0090333);; "	--	Probable peptide/nitrate transporter At3g43790 GN=ZIFL2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si009996m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable peptide/nitrate transporter At3g43790-like [Setaria italica]
comp130596_c0	0.000584188	2.764747746	up	--	--	--	--	--	Os01g0873100 protein (Fragment) GN=Os01g0873100 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os01g0873100 [Oryza sativa Japonica Group] 
comp215050_c0	1.60E-05	-3.32765436	down	--	--	"Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: binding (GO:0005488);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to stress (GO:0006950);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: tissue development (GO:0009888);; Molecular Function: heme binding (GO:0020037);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: organ development (GO:0048513);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Cationic peroxidase SPC4 (Precursor) GN=Sb03g046810 OS=Sorghum bicolor (Sorghum) PE=1 SV=2	Uncharacterized protein GN=Si022615m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: peroxidase 2-like [Setaria italica]
comp231960_c0	0.000981221	-2.282622809	down	--	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: pattern specification process (GO:0007389);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: defense response, incompatible interaction (GO:0009814);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: cell tip growth (GO:0009932);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: pectate lyase activity (GO:0030570);; Cellular Component: anchored to membrane (GO:0031225);; Biological Process: cell wall modification involved in multidimensional cell growth (GO:0042547);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: root hair elongation (GO:0048767);; "	K01728|1e-163|zma:100281162|pectate lyase 8	Probable pectate lyase 1 (Precursor) GN=At1g04680 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Pectate lyase 8 OS=Zea mays (Maize) PE=2 SV=1	pectate lyase 8 [Zea mays] 
comp219437_c0	5.87E-06	-3.04568339	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: response to stimulus (GO:0050896);; "	--	UDP-glycosyltransferase 90A2 GN=UGT90A2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si006359m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: UDP-glycosyltransferase 90A1-like [Setaria italica]
comp224226_c2	0.005024896	-2.972862742	down	--	--	"Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Biological Process: RNA methylation (GO:0001510);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: small nucleolar ribonucleoprotein complex (GO:0005732);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: abscisic acid mediated signaling pathway (GO:0009738);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: secondary cell wall biogenesis (GO:0009834);; Biological Process: determination of bilateral symmetry (GO:0009855);; Biological Process: anther dehiscence (GO:0009901);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: fruit dehiscence (GO:0010047);; Biological Process: primary shoot apical meristem specification (GO:0010072);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: specification of floral organ identity (GO:0010093);; Biological Process: leaf senescence (GO:0010150);; Biological Process: organ boundary specification between lateral organs and the meristem (GO:0010199);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: positive regulation of cell fate commitment (GO:0010455);; Cellular Component: Cajal body (GO:0015030);; Cellular Component: membrane (GO:0016020);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: innate immune response (GO:0045087);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: carpel development (GO:0048440);; Biological Process: regulation of timing of organ formation (GO:0048504);; Biological Process: lateral root development (GO:0048527);; Biological Process: root cap development (GO:0048829);; Biological Process: negative regulation of cell division (GO:0051782);; "	--	NAC domain-containing protein 12 GN=F6N18.15 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Os06g0131700 protein GN=Os06g0131700 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Os06g0131700 [Oryza sativa Japonica Group] 
comp210054_c1	0.00245406	-2.369373822	down	--	--	"Cellular Component: cytosol (GO:0005829);; Biological Process: metabolic process (GO:0008152);; Biological Process: fatty acid catabolic process (GO:0009062);; Biological Process: response to UV (GO:0009411);; Biological Process: salicylic acid metabolic process (GO:0009696);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: cinnamic acid ester metabolic process (GO:0009801);; Biological Process: shoot morphogenesis (GO:0010016);; Molecular Function: abscisic acid glucosyltransferase activity (GO:0010294);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: cellular response to water deprivation (GO:0042631);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Molecular Function: sinapate 1-glucosyltransferase activity (GO:0050284);; Molecular Function: indole-3-butyrate beta-glucosyltransferase activity (GO:0052638);; Molecular Function: salicylic acid glucosyltransferase (ester-forming) activity (GO:0052639);; Molecular Function: salicylic acid glucosyltransferase (glucoside-forming) activity (GO:0052640);; Molecular Function: benzoic acid glucosyltransferase activity (GO:0052641);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; Biological Process: cellular response to abscisic acid stimulus (GO:0071215);; Biological Process: cellular hyperosmotic salinity response (GO:0071475);; Molecular Function: UDP-glucose:4-aminobenzoate acylglucosyltransferase activity (GO:0080002);; Biological Process: indolebutyric acid metabolic process (GO:0080024);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 3'-O-glucosyltransferase activity (GO:0080045);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; Biological Process: response to karrikin (GO:0080167);; "	--	UDP-glycosyltransferase 83A1 GN=UGT83A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=ZEAMMB73_666809 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_666809 [Zea mays]
comp202518_c1	0.003179274	-2.372748482	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to light stimulus (GO:0009416);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; "	--	GATA transcription factor 2 GN=GATA2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si036273m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: GATA transcription factor 2-like [Setaria italica]
comp212712_c0	0.004120715	-1.962889122	down	--	--	--	--	--	--	--
comp221224_c0	0.001367386	-2.667566333	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; "	--	--	Uncharacterized protein GN=ZEAMMB73_747516 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_747516 [Zea mays]
comp212368_c0	1.19E-06	2.650783423	up	[TZDR]	--	"Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: protein binding (GO:0005515);; Biological Process: response to stress (GO:0006950);; Cellular Component: plastid (GO:0009536);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: trichome branching (GO:0010091);; Biological Process: reproductive process (GO:0022414);; Biological Process: response to cadmium ion (GO:0046686);; Molecular Function: metal ion binding (GO:0046872);; "	--	Probable calcium-binding protein CML21 GN=CML21 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Uncharacterized protein GN=Si023228m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable calcium-binding protein CML21-like [Setaria italica]
comp169664_c0	0.000174784	-2.515464935	down	--	--	--	--	--	Putative uncharacterized protein OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein [Zea mays]
comp228005_c0	0.002812092	1.904316188	up	--	--	"Cellular Component: nucleus (GO:0005634);; "	--	Low-temperature-induced 65 kDa protein GN=K24M7.3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si039986m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	hypothetical protein ZEAMMB73_331914 [Zea mays]
comp216229_c0	4.18E-06	2.531796786	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; "	--	Uncharacterized protein At3g27210 GN=Y-2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb06g012300 GN=Sb06g012300 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g012300 [Sorghum bicolor] 
comp219684_c0	7.44E-05	-2.586470043	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si002166m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101762187 isoform X1 [Setaria italica] 
comp223066_c0	0.001747537	-1.999132965	down	--	--	--	--	Splicing factor U2af large subunit B GN=U2AF65B OS=Triticum aestivum (Wheat) PE=2 SV=1	Uncharacterized protein GN=Si025243m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein starmaker-like [Setaria italica]
comp224427_c2	0.004101348	-1.933091481	down	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: iron ion transport (GO:0006826);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to cold (GO:0009409);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: lignin metabolic process (GO:0009808);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: response to nitrate (GO:0010167);; Biological Process: response to chitin (GO:0010200);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: regulation of plant-type hypersensitive response (GO:0010363);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: brassinosteroid biosynthetic process (GO:0016132);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Molecular Function: heme binding (GO:0020037);; Biological Process: hyperosmotic salinity response (GO:0042538);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Molecular Function: metal ion binding (GO:0046872);; Cellular Component: apoplast (GO:0048046);; Biological Process: lateral root development (GO:0048527);; Biological Process: developmental growth (GO:0048589);; Biological Process: root hair cell differentiation (GO:0048765);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Peroxidase 1 (Precursor) GN=OJ1057_B02.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=2	Putative uncharacterized protein Sb2674s002010 GN=Sb2674s002010 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_2674s002010 [Sorghum bicolor] 
comp221288_c0	0.003471335	-1.933605564	down	[S]	Function unknown 	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: polysaccharide catabolic process (GO:0000272);; Biological Process: regionalization (GO:0003002);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Biological Process: immune response (GO:0006955);; Biological Process: organelle organization (GO:0006996);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: epidermis development (GO:0008544);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: embryo development (GO:0009790);; Biological Process: post-embryonic morphogenesis (GO:0009886);; Biological Process: meristem structural organization (GO:0009933);; Biological Process: root morphogenesis (GO:0010015);; Biological Process: shoot morphogenesis (GO:0010016);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: cell growth (GO:0016049);; Biological Process: cell differentiation (GO:0030154);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Molecular Function: signaling receptor activity (GO:0038023);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: anther development (GO:0048653);; Biological Process: regulation of biological quality (GO:0065008);; Biological Process: cell wall organization or biogenesis (GO:0071554);; "	--	Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 (Precursor) GN=At2g41820 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si028868m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820-like [Setaria italica]
comp226833_c0	0.000646921	2.141630379	up	[J]	Translation, ribosomal structure and biogenesis 	"Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Molecular Function: UDP-glucosyltransferase activity (GO:0035251);; Cellular Component: intracellular part (GO:0044424);; Biological Process: response to stimulus (GO:0050896);; "	--	UDP-glycosyltransferase 89B1 GN=UGT89B1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si006267m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: UDP-glycosyltransferase 90A1-like [Setaria italica]
comp176397_c0	5.11E-07	2.7544622	up	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: defense response (GO:0006952);; Biological Process: gibberellin metabolic process (GO:0009685);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	--	Probable WRKY transcription factor 40 GN=WRKY40 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=BRADI3G06070 OS=Brachypodium distachyon (Purple false brome) PE=4 SV=1	PREDICTED: probable WRKY transcription factor 40-like [Brachypodium distachyon]
comp231064_c0	0.004113528	1.872012414	up	[H]	Coenzyme transport and metabolism 	"Biological Process: RNA splicing, via endonucleolytic cleavage and ligation (GO:0000394);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: hexaprenyldihydroxybenzoate methyltransferase activity (GO:0004395);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrial envelope (GO:0005740);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: ubiquinone biosynthetic process (GO:0006744);; Biological Process: organelle organization (GO:0006996);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity (GO:0008425);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: shade avoidance (GO:0009641);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to brassinosteroid stimulus (GO:0009741);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: flower development (GO:0009908);; Biological Process: red or far-red light signaling pathway (GO:0010017);; Biological Process: response to chitin (GO:0010200);; Biological Process: response to far red light (GO:0010218);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: methylglyoxal catabolic process to D-lactate (GO:0019243);; Biological Process: methylation (GO:0032259);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: long-day photoperiodism (GO:0048571);; Biological Process: short-day photoperiodism (GO:0048572);; Biological Process: negative regulation of post-embryonic development (GO:0048581);; Biological Process: negative regulation of response to stimulus (GO:0048585);; Biological Process: response to karrikin (GO:0080167);; Biological Process: regulation of photoperiodism, flowering (GO:2000028);; "	K00591|1e-172|osa:4340157|Os06g0152300	Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial (Precursor) GN=F7F1.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si006670m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: probable salt tolerance-like protein At1g78600-like [Setaria italica]
comp219456_c0	0.001088073	-2.044905071	down	--	--	"Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=Si002393m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: fibroin heavy chain-like [Setaria italica]
comp230939_c2	0.007662454	1.740207285	up	--	--	"Cellular Component: chloroplast (GO:0009507);; Cellular Component: plastid (GO:0009536);; "	--	Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana (Moth orchid) PE=4 SV=1	Cell wall-associated hydrolase (Fragment) GN=MTR_069s1001 OS=Medicago truncatula (Barrel medic) PE=4 SV=1	Cell wall-associated hydrolase, partial [Medicago truncatula] 
comp203123_c0	0.003254396	1.847656589	up	--	--	--	--	--	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=4 SV=1	TPA: hypothetical protein ZEAMMB73_110694 [Zea mays]
comp231354_c0	0.00057501	-3.583084645	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: polyamine catabolic process (GO:0006598);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cinnamic acid biosynthetic process (GO:0009800);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: response to UV-B (GO:0010224);; Biological Process: glucuronoxylan metabolic process (GO:0010413);; Biological Process: cellular response to sulfur starvation (GO:0010438);; Biological Process: regulation of glucosinolate biosynthetic process (GO:0010439);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Biological Process: xylan biosynthetic process (GO:0045492);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: positive regulation of secondary cell wall biogenesis (GO:1901348);; Biological Process: regulation of phenylpropanoid metabolic process (GO:2000762);; "	K09422|2e-34|sbi:SORBI_03g011640|hypothetical protein	Transcription factor MYB86 GN=F21E10.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	MYB transcription factor MYB160 (Fragment) GN=MYB160 OS=Glycine max (Soybean) PE=2 SV=1	hypothetical protein M569_08448, partial [Genlisea aurea]
comp163225_c0	0.008807853	-1.769581635	down	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: binding (GO:0005488);; Cellular Component: plastid (GO:0009536);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of cellular process (GO:0050794);; "	--	Chaperone protein dnaJ 11, chloroplastic (Precursor) GN=T19K4.170 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Os03g0244950 protein GN=Os03g0244950 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	Os03g0244950 [Oryza sativa Japonica Group] 
comp206695_c0	0.006387499	-1.97615481	down	--	--	"Biological Process: microtubule cytoskeleton organization (GO:0000226);; Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: DNA methylation (GO:0006306);; Biological Process: methylation-dependent chromatin silencing (GO:0006346);; Biological Process: cell communication (GO:0007154);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: leaf morphogenesis (GO:0009965);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: chromatin silencing by small RNA (GO:0031048);; Biological Process: regulation of protein localization (GO:0032880);; Biological Process: regulation of cell proliferation (GO:0042127);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Cellular Component: anchored to plasma membrane (GO:0046658);; Biological Process: floral organ formation (GO:0048449);; Biological Process: histone H3-K9 methylation (GO:0051567);; "	--	Glucan endo-1,3-beta-glucosidase 11 (Precursor) GN=At1g32860 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb09g021800 GN=Sb09g021800 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	hypothetical protein SORBIDRAFT_09g021800 [Sorghum bicolor] 
comp129744_c0	0.006298227	1.760354575	up	[RTKL]	--	"Biological Process: polysaccharide biosynthetic process (GO:0000271);; Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: starch metabolic process (GO:0005982);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: ion transport (GO:0006811);; Biological Process: organelle organization (GO:0006996);; Biological Process: multicellular organismal development (GO:0007275);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: microsporogenesis (GO:0009556);; Biological Process: response to bacterium (GO:0009617);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: cell tip growth (GO:0009932);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: meristem maintenance (GO:0010073);; Biological Process: tapetal cell fate specification (GO:0010234);; Biological Process: regulation of hormone levels (GO:0010817);; Biological Process: cellular membrane organization (GO:0016044);; Biological Process: regulation of metabolic process (GO:0019222);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: cellulose metabolic process (GO:0030243);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: macromolecule localization (GO:0033036);; Biological Process: cellular response to stress (GO:0033554);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: response to topologically incorrect protein (GO:0035966);; Biological Process: regulation of programmed cell death (GO:0043067);; Biological Process: macromolecule methylation (GO:0043414);; Biological Process: anthocyanin accumulation in tissues in response to UV light (GO:0043481);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: negative regulation of biological process (GO:0048519);; Biological Process: root hair elongation (GO:0048767);; Biological Process: detection of stimulus (GO:0051606);; Biological Process: organic substance transport (GO:0071702);; "	--	Calmodulin-binding receptor-like cytoplasmic kinase 2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si026507m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Setaria italica]
comp129982_c0	0.000112269	2.260286728	up	[M]	Cell wall/membrane/envelope biogenesis 	"Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: defense response (GO:0006952);; Biological Process: response to cold (GO:0009409);; Biological Process: response to bacterium (GO:0009617);; Biological Process: response to salt stress (GO:0009651);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; Cellular Component: apoplast (GO:0048046);; "	--	"Putative glucan endo-1,3-beta-glucosidase GVI (Precursor; Fragment) OS=Hordeum vulgare (Barley) PE=3 SV=1"	Uncharacterized protein GN=Si022492m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI-like [Setaria italica]
comp209043_c0	0.000166448	-2.628303397	down	--	--	"Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: metabolic process (GO:0008152);; Molecular Function: serine-type peptidase activity (GO:0008236);; Biological Process: cellular process (GO:0009987);; Biological Process: seed coat development (GO:0010214);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: organic substance metabolic process (GO:0071704);; "	--	Subtilisin-like protease (Precursor) GN=K8K14.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si004652m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: subtilisin-like protease-like [Setaria italica]
comp219760_c0	0.000693609	-2.953322527	down	--	--	"Cellular Component: mitochondrion (GO:0005739);; Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; "	--	CASP-like protein 15 OS=Zea mays (Maize) PE=2 SV=2	Uncharacterized protein GN=ZEAMMB73_726100 OS=Zea mays (Maize) PE=4 SV=1	hypothetical protein ZEAMMB73_726100 [Zea mays]
comp225108_c0	6.25E-05	-2.472307451	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: acetyl-CoA metabolic process (GO:0006084);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: regulation of meristem growth (GO:0010075);; "	--	Protein IQ-DOMAIN 14 GN=IQD14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si035462m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: protein IQ-DOMAIN 14-like isoform X1 [Setaria italica] 
comp215149_c1	0.001941959	2.154405458	up	--	--	"Cellular Component: plastid (GO:0009536);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; "	--	--	Uncharacterized protein GN=OB01G14250 OS=Oryza brachyantha PE=4 SV=1	predicted protein [Hordeum vulgare subsp. vulgare]
comp197511_c1	0.006133771	-3.665591194	down	--	--	"Molecular Function: sulfotransferase activity (GO:0008146);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: jasmonic acid metabolic process (GO:0009694);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: flavonoid metabolic process (GO:0009812);; Biological Process: glucosinolate biosynthetic process (GO:0019761);; Biological Process: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance (GO:0032260);; Biological Process: indole-containing compound metabolic process (GO:0042430);; Biological Process: hormone metabolic process (GO:0042445);; Cellular Component: intracellular part (GO:0044424);; Biological Process: monocarboxylic acid biosynthetic process (GO:0072330);; Molecular Function: 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity (GO:0080066);; Molecular Function: 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity (GO:0080067);; Molecular Function: 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity (GO:0080068);; Molecular Function: 7-methylthioheptyl-desulfoglucosinolate sulfotransferase activity (GO:0080069);; Molecular Function: 8-methylthiooctyl-desulfoglucosinolate sulfotransferase activity (GO:0080070);; Molecular Function: indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity (GO:0080071);; Molecular Function: brassinosteroid sulfotransferase activity (GO:0080118);; Molecular Function: hydroxyjasmonate sulfotransferase activity (GO:0080131);; "	--	Cytosolic sulfotransferase 13 GN=SOT13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1	Predicted protein OS=Hordeum vulgare var. distichum (Two-rowed barley) PE=2 SV=1	predicted protein [Hordeum vulgare subsp. vulgare] 
comp211672_c0	0.000230798	4.021633515	up	[G]	Carbohydrate transport and metabolism 	"Molecular Function: chitinase activity (GO:0004568);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Cellular Component: nuclear lumen (GO:0031981);; Biological Process: regulation of cellular process (GO:0050794);; "	K01183|4e-16|cre:CHLREDRAFT_113089|hypothetical protein	Proline-rich receptor-like protein kinase PERK8 GN=PERK8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative GH18 endochitinase GN=CHI3 OS=Aphanomyces astaci PE=2 SV=1	chitinase [Chaetomium thermophilum] 
comp221919_c0	1.26E-07	-3.360036057	down	[R]	General function prediction only 	"Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: gibberellin metabolic process (GO:0009685);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Molecular Function: gibberellin 3-beta-dioxygenase activity (GO:0016707);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; "	K04124|0.0|sbi:SORBI_03g004020|hypothetical protein	Gibberellin 3-beta-dioxygenase 2-2 GN=GA3ox2-2 OS=Triticum aestivum (Wheat) PE=2 SV=1	Uncharacterized protein GN=Si001832m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: gibberellin 3-beta-dioxygenase 2-2-like [Setaria italica]
comp231990_c0	4.56E-06	-2.639125771	down	[GEPR]	--	"Molecular Function: sugar:hydrogen symporter activity (GO:0005351);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: cellular process (GO:0009987);; Biological Process: monosaccharide transport (GO:0015749);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: biological regulation (GO:0065007);; Cellular Component: pollen tube (GO:0090406);; "	--	Polyol transporter 5 GN=PLT5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2	Uncharacterized protein GN=Si021837m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: polyol transporter 5-like [Setaria italica]
comp206878_c1	0.004763665	1.809445173	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transcription, DNA-dependent (GO:0006351);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: response to chitin (GO:0010200);; Biological Process: organ senescence (GO:0010260);; Biological Process: response to cyclopentenone (GO:0010583);; Cellular Component: nuclear body (GO:0016604);; Biological Process: response to anoxia (GO:0034059);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: transcription factor import into nucleus (GO:0042991);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Biological Process: cotyledon development (GO:0048825);; Biological Process: detection of hypoxia (GO:0070483);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: cellular response to freezing (GO:0071497);; "	--	Ethylene-responsive transcription factor RAP2-12 GN=T18A20.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si036647m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Setaria italica]
comp219586_c1	3.23E-06	2.695254349	up	--	--	--	--	--	Uncharacterized protein GN=Si036983m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	--
comp224848_c1	1.62E-06	-2.815101618	down	--	--	"Molecular Function: signal transducer activity (GO:0004871);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: pattern specification process (GO:0007389);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: tropism (GO:0009606);; Biological Process: pollen tube growth (GO:0009860);; Biological Process: meristem development (GO:0048507);; Biological Process: regulation of biological process (GO:0050789);; Biological Process: response to stimulus (GO:0050896);; "	--	BTB/POZ domain-containing protein At1g03010 GN=At1g03010 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si034579m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Setaria italica]
comp209847_c2	0.003615995	2.595659552	up	--	--	--	--	--	Putative uncharacterized protein Sb03g004330 GN=Sb03g004330 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g004330 [Sorghum bicolor] 
comp214263_c0	0.000765701	-2.08501295	down	--	--	"Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: signal transduction (GO:0007165);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: plastid organization (GO:0009657);; Biological Process: response to cytokinin stimulus (GO:0009735);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: seed germination (GO:0009845);; Biological Process: organ morphogenesis (GO:0009887);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: polarity specification of adaxial/abaxial axis (GO:0009944);; Biological Process: radial pattern formation (GO:0009956);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: abaxial cell fate specification (GO:0010158);; Biological Process: seed dormancy process (GO:0010162);; Biological Process: inflorescence development (GO:0010229);; Biological Process: gene expression (GO:0010467);; Biological Process: RNA metabolic process (GO:0016070);; Biological Process: cellular response to hormone stimulus (GO:0032870);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: cellular biosynthetic process (GO:0044249);; Biological Process: positive regulation of biological process (GO:0048518);; Biological Process: regulation of cellular process (GO:0050794);; Biological Process: integument development (GO:0080060);; "	--	Myb family transcription factor APL GN=APL OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	uncharacterized protein LOC100304352 [Zea mays] 
comp237306_c0	0.007978073	1.760474818	up	--	--	--	--	Uncharacterized protein At5g05190 GN=Y-1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si034597m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein At5g05190-like [Setaria italica]
comp229138_c1	0.00195635	-2.615848002	down	--	--	"Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP catabolic process (GO:0006200);; Biological Process: ATP biosynthetic process (GO:0006754);; Biological Process: transport (GO:0006810);; Biological Process: cation transport (GO:0006812);; Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553);; Cellular Component: integral to membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; Cellular Component: intracellular part (GO:0044424);; Molecular Function: metal ion binding (GO:0046872);; "	K01535|8e-92|cme:CMQ247C|plasma membrane H+-ATPase	ATPase 1, plasma membrane-type GN=AHA1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=3	Uncharacterized protein GN=OB02G27040 OS=Oryza brachyantha PE=3 SV=1	H(+)-ATPase [Funneliformis mosseae]
comp212693_c0	1.98E-05	2.380849074	up	[O]	Posttranslational modification, protein turnover, chaperones 	"Molecular Function: protein binding (GO:0005515);; Cellular Component: Golgi stack (GO:0005795);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: tropism (GO:0009606);; Biological Process: response to abiotic stimulus (GO:0009628);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: response to cadmium ion (GO:0046686);; "	--	Chaperone protein dnaJ 15 GN=T2E12.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	PREDICTED: dnaJ homolog subfamily C member 7 homolog isoform X2 [Setaria italica]
comp225390_c0	9.89E-10	3.314556637	up	--	--	"Cellular Component: nucleus (GO:0005634);; Cellular Component: peroxisome (GO:0005777);; Biological Process: polyamine catabolic process (GO:0006598);; Molecular Function: primary amine oxidase activity (GO:0008131);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: response to cold (GO:0009409);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: chromatin modification (GO:0016568);; Biological Process: methylation (GO:0032259);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Molecular Function: polyamine oxidase activity (GO:0046592);; Biological Process: system development (GO:0048731);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Probable polyamine oxidase 4 GN=PAO4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb06g032450 GN=Sb06g032450 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_06g032450 [Sorghum bicolor] 
comp232068_c3	0.000124085	-2.41531411	down	--	--	--	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Uncharacterized protein GN=Si019933m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: uncharacterized protein LOC101765176 [Setaria italica]
comp174678_c0	0.002363769	-3.366032158	down	--	--	--	--	Leucine-rich repeat extensin-like protein 5 (Precursor) GN=LRX5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2	Uncharacterized protein GN=Si033303m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: zinc finger protein ZAT9-like [Setaria italica]
comp219033_c3	3.85E-08	2.93983982	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral to plasma membrane (GO:0005887);; Biological Process: iron ion transport (GO:0006826);; Biological Process: osmosensory signaling pathway (GO:0007231);; Biological Process: response to heat (GO:0009408);; Biological Process: response to wounding (GO:0009611);; Biological Process: systemic acquired resistance (GO:0009627);; Biological Process: response to ethylene stimulus (GO:0009723);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: hormone-mediated signaling pathway (GO:0009755);; Biological Process: seed germination (GO:0009845);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: response to nitrate (GO:0010167);; Biological Process: nitrate transport (GO:0015706);; Cellular Component: integral to membrane (GO:0016021);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: NAD(P)H oxidase activity (GO:0016174);; Biological Process: regulation of defense response (GO:0031347);; Biological Process: carbohydrate homeostasis (GO:0033500);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: negative regulation of programmed cell death (GO:0043069);; Biological Process: macromolecule metabolic process (GO:0043170);; Molecular Function: protein self-association (GO:0043621);; Biological Process: hydrogen peroxide biosynthetic process (GO:0050665);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: defense response by callose deposition (GO:0052542);; Biological Process: oxidation-reduction process (GO:0055114);; "	--	Respiratory burst oxidase homolog protein B GN=RBOHB OS=Solanum tuberosum (Potato) PE=1 SV=1	Uncharacterized protein GN=Si021158m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: respiratory burst oxidase homolog protein B-like [Setaria italica]
comp130329_c0	2.36E-05	2.361588586	up	--	--	--	K14488|2e-52|zma:100284388|calmodulin binding protein	Indole-3-acetic acid-induced protein ARG7 GN=ARG7 OS=Vigna radiata var. radiata (Mung bean) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	calmodulin binding protein [Zea mays] 
comp227022_c2	1.52E-05	-2.664351831	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: polyamine catabolic process (GO:0006598);; Biological Process: oligopeptide transport (GO:0006857);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to insect (GO:0009625);; Biological Process: response to salt stress (GO:0009651);; Biological Process: induced systemic resistance (GO:0009682);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to abscisic acid stimulus (GO:0009737);; Biological Process: response to gibberellin stimulus (GO:0009739);; Biological Process: response to sucrose stimulus (GO:0009744);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: cinnamic acid biosynthetic process (GO:0009800);; Biological Process: coumarin biosynthetic process (GO:0009805);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: seed germination (GO:0009845);; Biological Process: ethylene mediated signaling pathway (GO:0009873);; Biological Process: trichome morphogenesis (GO:0010090);; Biological Process: response to UV-B (GO:0010224);; Biological Process: cellular response to sulfur starvation (GO:0010438);; Biological Process: regulation of glucosinolate biosynthetic process (GO:0010439);; Biological Process: cellular modified amino acid biosynthetic process (GO:0042398);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: mucilage biosynthetic process involved in seed coat development (GO:0048354);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: regulation of secondary cell wall biogenesis (GO:2000652);; Biological Process: regulation of phenylpropanoid metabolic process (GO:2000762);; "	K09422|6e-29|zma:100101510|cl51309_1	Protein ODORANT1 GN=ODO1 OS=Petunia hybrida (Petunia) PE=2 SV=1	Uncharacterized protein OS=Zea mays (Maize) PE=2 SV=1	unknown [Zea mays] 
comp220592_c0	0.001952347	-2.221951604	down	--	--	"Molecular Function: protein binding (GO:0005515);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to stress (GO:0006950);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: positive regulation of flavonoid biosynthetic process (GO:0009963);; Biological Process: auxin homeostasis (GO:0010252);; Cellular Component: membrane (GO:0016020);; Molecular Function: shikimate O-hydroxycinnamoyltransferase activity (GO:0047172);; Molecular Function: quinate O-hydroxycinnamoyltransferase activity (GO:0047205);; Molecular Function: agmatine N4-coumaroyltransferase activity (GO:0047634);; "	--	Agmatine coumaroyltransferase-2 GN=ACT-2 OS=Hordeum vulgare (Barley) PE=1 SV=1	Putative uncharacterized protein GN=OsJ_16525 OS=Oryza sativa subsp. japonica (Rice) PE=4 SV=1	hypothetical protein OsJ_16525 [Oryza sativa Japonica Group]
comp231198_c0	3.48E-05	-2.44472611	down	--	--	"Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: Arp2/3 protein complex (GO:0005885);; Biological Process: regulation of actin filament polymerization (GO:0030833);; "	K05758|0.0|zma:100284543|ARPC2B	Actin-related protein 2/3 complex subunit 2B GN=ARPC2B OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si010385m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: actin-related protein 2/3 complex subunit 2B-like [Setaria italica]
comp219224_c0	1.96E-07	2.796903103	up	--	--	"Molecular Function: inorganic diphosphatase activity (GO:0004427);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: auxin polar transport (GO:0009926);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: endosome membrane (GO:0010008);; Biological Process: establishment or maintenance of transmembrane electrochemical gradient (GO:0010248);; Biological Process: proton transport (GO:0015992);; Cellular Component: integral to membrane (GO:0016021);; Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023);; Biological Process: leaf development (GO:0048366);; "	K01507|0.0|osa:4331044|Os02g0802500	Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum vulgare (Barley) PE=2 SV=2	Vacuolar proton pyrophosphatase GN=Os02g0802500 OS=Oryza sativa subsp. japonica (Rice) PE=3 SV=1	Os02g0802500 [Oryza sativa Japonica Group] 
comp209951_c0	1.07E-05	-4.607596062	down	--	--	"Molecular Function: DNA binding (GO:0003677);; Biological Process: transcription, DNA-dependent (GO:0006351);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: sequence-specific DNA binding (GO:0043565);; "	--	Homeobox-leucine zipper protein HOX23 GN=OSJNBb0044I14.6 OS=Oryza sativa subsp. japonica (Rice) PE=2 SV=1	Putative uncharacterized protein Sb01g022420 GN=Sb01g022420 OS=Sorghum bicolor (Sorghum) PE=3 SV=1	PREDICTED: homeobox-leucine zipper protein HOX23-like [Setaria italica]
comp217653_c0	0.00108345	2.076182868	up	--	--	--	--	--	--	--
comp225356_c0	0.000110803	2.230471852	up	[R]	General function prediction only 	"Molecular Function: iron ion binding (GO:0005506);; Biological Process: vacuole organization (GO:0007033);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to auxin stimulus (GO:0009733);; Biological Process: response to jasmonic acid stimulus (GO:0009753);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Biological Process: proanthocyanidin biosynthetic process (GO:0010023);; Biological Process: organ senescence (GO:0010260);; Biological Process: detection of bacterium (GO:0016045);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706);; Molecular Function: flavonol synthase activity (GO:0045431);; Biological Process: pigment biosynthetic process (GO:0046148);; Biological Process: seed development (GO:0048316);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: response to karrikin (GO:0080167);; "	--	Protein SRG1 GN=SRG1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si036188m.g OS=Setaria italica (Foxtail millet) PE=3 SV=1	PREDICTED: leucoanthocyanidin dioxygenase-like [Setaria italica]
comp233109_c4	7.81E-06	2.606026506	up	--	--	"Biological Process: respiratory burst involved in defense response (GO:0002679);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription, DNA-dependent (GO:0006355);; Biological Process: amino acid transport (GO:0006865);; Biological Process: toxin catabolic process (GO:0009407);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: response to glucose stimulus (GO:0009749);; Biological Process: response to salicylic acid stimulus (GO:0009751);; Biological Process: negative regulation of abscisic acid mediated signaling pathway (GO:0009788);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Biological Process: negative regulation of ethylene mediated signaling pathway (GO:0010105);; Biological Process: response to chitin (GO:0010200);; Biological Process: organ senescence (GO:0010260);; Biological Process: response to cyclopentenone (GO:0010583);; Biological Process: response to anoxia (GO:0034059);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892);; Biological Process: positive regulation of transcription, DNA-dependent (GO:0045893);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: detection of hypoxia (GO:0070483);; Biological Process: cellular response to hypoxia (GO:0071456);; Biological Process: cellular response to freezing (GO:0071497);; "	--	Ethylene-responsive transcription factor 1 GN=OJ1311_D08.9 OS=Oryza sativa subsp. japonica (Rice) PE=1 SV=1	Uncharacterized protein GN=OsI_33421 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1	hypothetical protein OsI_33421 [Oryza sativa Indica Group]
comp227418_c0	7.70E-10	3.553221141	up	--	--	--	--	--	--	--
comp231201_c0	0.000106179	2.975475125	up	--	--	"Cellular Component: cytoplasm (GO:0005737);; Biological Process: metabolic process (GO:0008152);; Biological Process: salicylic acid metabolic process (GO:0009696);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Biological Process: cinnamic acid ester metabolic process (GO:0009801);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Biological Process: benzoate metabolic process (GO:0018874);; Biological Process: para-aminobenzoic acid metabolic process (GO:0046482);; Molecular Function: sinapate 1-glucosyltransferase activity (GO:0050284);; Molecular Function: salicylic acid glucosyltransferase (glucoside-forming) activity (GO:0052640);; Molecular Function: benzoic acid glucosyltransferase activity (GO:0052641);; Molecular Function: UDP-glucose:4-aminobenzoate acylglucosyltransferase activity (GO:0080002);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; Molecular Function: quercetin 4'-O-glucosyltransferase activity (GO:0080046);; Biological Process: response to karrikin (GO:0080167);; "	--	UDP-glycosyltransferase 83A1 GN=UGT83A1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	Uncharacterized protein GN=Si035627m.g OS=Setaria italica (Foxtail millet) PE=4 SV=1	PREDICTED: UDP-glycosyltransferase 83A1-like [Setaria italica]
comp182947_c0	1.08E-05	-4.116121393	down	--	--	"Cellular Component: plastid (GO:0009536);; "	--	Arginine/serine-rich protein 45 GN=F19K19.9 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1	Putative uncharacterized protein Sb03g033490 GN=Sb03g033490 OS=Sorghum bicolor (Sorghum) PE=4 SV=1	hypothetical protein SORBIDRAFT_03g033490 [Sorghum bicolor] 
comp127332_c0	0.003171541	-3.318408551	down	[M]	Cell wall/membrane/envelope biogenesis 	"Biological Process: response to stress (GO:0006950);; Biological Process: response to hormone stimulus (GO:0009725);; Biological Process: cellular process (GO:0009987);; "	--	Probable F-box protein At1g60180 GN=At2g36090 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1	F-box domain containing protein OS=Zea mays (Maize) PE=2 SV=1	TPA: F-box domain containing protein [Zea mays]
comp221047_c0	8.50E-07	-3.657732147	down	--	--	--	--	--	--	--