Names of primers and probes Oligonucleotide sequences of primers and probes Alu333 Probe ATTTTAGGAGTTCATAGTCCAAGAACAGTGAGTTATTAGG Alu333-F TTCATAGTCCAAGAACAGTG Alu333-R GCTGAGTTTACATTACACCTG GCR_cBin27428_Ctg1_107-F GAAGAGGTTTTAATGATTACAAGGGATTACACCCTTTGTC GCR_cBin27428_Ctg1_107-R TGAATGATCCTTTGGCTTAT GCR_cBin20885_Ctg1_58-F TATCTACAGAAGAAGCAGATCCCCTCCCTCCTACCAATTA GCR_cBin20885_Ctg1_58-R CTAGAATGAAGTCGCCGTCC ESTNV_29361_552-F TGAATGTTTTCTCTTCTCCTTTTGGTGCCCAATACTGACA ESTNV_29361_552-R ACGGGATCCATGTTATCGAG ESTV_20585_205and225-F CAGTTTGGAGCACCAAACCATTCATCAAAACCATGCTCCA ESTV_20585_205and225-R AGCTAACCCCCTCTGCTCTC ESTNV_31857_323-F TGATCAACAAACTGAACTGATATCCACCAGGAAAAGCAGG ESTNV_31857_323-R TGATGAACATCTGAACCCGA GCR_cBin17597_Ctg1_113-F GACCTCGGAGTGACTCTGGGTGGCTGGATACTGAGTCACG GCR_cBin17597_Ctg1_113-R CAGGCGCTCTCTGTCTCTCT GCR_cBin3508_Ctg1_304-F CATTTGCCTTTCACACAGTCCACTTCCTTCCTCATCATGT GCR_cBin3508_Ctg1_304-R GCACCAGTAACTCCTGTTTT GCR_cBin18968_Ctg1_274-F ATAGAAAACATTCTTCCCACTCCCAATTTGAGGCTTTTTG GCR_cBin18968_Ctg1_274-R GGGAATCAATGGAAGGGATT ESTNV_36692_352and1354and1678-F GAAGAACCTCAAAGAAGGGGATAGAGTCGCCGTAGAGCCA ESTNV_36692_352and1354and1678-R AGGCGTGAATACCCACAGAC GCR_cBin1841_Ctg1_67-F TGTGTCATATTCCCTTATTAGGGCCTCAATGGATAAGACA GCR_cBin1841_Ctg1_67-R TTTCATGTCCCCAAAGCAAT GCR_cBin38513_Ctg1_80-F AAAACATTGGCCAAAGCCTTTTGACAACATTCGCACCACT GCR_cBin38513_Ctg1_80-R GGAAAACAATTACCGACCGA fps378 S0063G22SP6-Probe TTGAACATAATTGAAAAGGGACCTGTGAGTCAGAGAGTGG S0063G22T7-F CAAATCAGGGATTCAAGGTGCAAAGTCAAAGACCATCCAG S0063G22T7-R TAACAACATAGCAGGAAGCA S0258L08SP6-F GGACAAGCAAGCAAAATTAC S0258L08SP6-R GAGTGCAGAGGTTCAGAAAG S0162J03SP6-F GAGACTCATCATCGTCTAGCGATGTGAGAGGAAAAAGCAC S0162J03SP6-R GCTGTGAACCTTTTGACTTC S0162J03T7-F TTTTTCATTTTCTCTGAGCCAATGTCACAGTCAGGCTTTT S0162J03T7-R ATGAGGCGGTATTCAAAGTA fps787 S0160J02T7-Probe ATCAATCTGAGTGGGTCTAGTTGGGACCACTGAGACCTGC Ssa0903BSFU-F(S0160J02T7) AAACTCCCATCAACCCCC Ssa0903BSFU-R(S0160J02T7) AGAGAGAGAGAGAGCAGGGT S0160J02SP6-F TGAGCAATACATTTGGAACA S0160J02SP6-R CAAACTAGAGGTGGGAATTG S0262M03SP6-F GTCAGAGCGGATTCGTAAG S0262M03SP6-R ATTTAGTTCCCATGCTTTCC S0282P22SP6-F TCAGGAGCAGTAAAGAGAGC S0282P22SP6-R TTGACTCAAGGACGAGAGTT S0282P22T7-F AACCTGTTTCCAAATTTCCT S0282P22T7-R CAACAACCTCTCTGTCACCT S0001F22SP6-F AACAACACCAGGTCAAAACT S0001F22SP6-R CTTCCACTGAATTTCCTTTG S0048P16SP6-F ACCGTACTGTACATTCCCACAACCTGACAAACTACCCACA S0048P16SP6-R ACCTGACAAACTACCCACAC S0048P16T7-F CTGTCTGTCTCCAACTGTTTGAAAAGCATGTTAGCCTGTC S0048P16T7-R CGTTTTAGCCAAAGACTGTT fps2100 S0215J07T7-F GGGTATGGGGCAGGGTCAAGGTGAGGGACAGAGGTACAAA S0215J07T7-R GCATAGAAAACCAGAAGCTG S0215J07SP6-F ATATGATAGGGAAGATACACAAAACCTTGCAGAGACCATA S0215J07SP6-R CTCTGTCGTTGTGCTGTAGA S0344A15SP6-F AACCATGTGAGAGTTTTGCT S0344A15SP6-R GAAGAGAAGGGGTTCTGTCT S0344A15T7-F CCACAGTAGCCAAAGAAATC S0344A15T7-R AGCTTAAACAAATGCAAAGG S0449E20SP6-F GAAAAGAGCATCTGGACATC S0449E20SP6-R CAAGGTCAGTTTAGCCACTC S0227H08SP6-F GGTAATTAGCTCTGGACCTTTTGAATTGCAACTAGCATTG S0227H08SP6-R GATGGTCGATCAAAATGAGT S0227H08T7-F TAAATCACTGAAATGTCGAGCAGCATAAGGGATGATTTGT S0227H08T7-R ACATCATGTTAGTCAAAGGACA fps334 S0259M06T7-F GTCAGCTTAAGATAAACTTTCCGCTCTAAACATTCTCATC S0259M06T7-R TGCTGCTGTTGTTTTCATAC S0259M06SP6-F AAATGAGCTCTAGGCGCAGAACATTACATTGGAGGCAGAG S0259M06SP6-R GGTTGTGACCTCAATACGTT S0115B04T7-F GTGGTGTCACACATAAGCTG S0115B04T7-R TGTTGGTTTTGTTGTTCAGA S0066E05SP6-F TTAATGTCCTCCTGTTGCTT S0066E05SP6-R TTTATTTTGCAACACTCACG S0066E05T7-F GGTGTTATTGTGGGTGTAGC S0066E05T7-R GAATCACTGGCCACTTTAAT S0243D12SP6-F CTGCTATCCTTGTCTTGAGG S0243D12SP6-R GTTCATGCCAATTAGAAAGC S0243D12T7-F TCCATGTTAATCAGGAGGAC S0243D12T7-R GATTTCCTTTATTCGCATTG S0161O04T7-F TCCCATTGTTGTATCTGACC S0161O04T7-R CCCAGAGAGTAGATGCAGAG S0162F10SP6-F TACGGTAAGTAGGGAGACGA S0162F10SP6-R TCAAACAAACATTGCATAGC S0162F10T7-F AACCAATCATATTGCTGAGG S0162F10T7-R AACACCTCCAAGTGGTTTC S0236E20SP6-F CAATAAAAGGCTGTCCAAAC S0236E20SP6-R ACATGGAACAATGGAGTCAT S0236E20T7-F AGCAGAACGCAGTACTAAGG S0236E20T7-R CCCACCCTACTCTACAGACA S0170B06SP6-F TGAGAGGTGTAAGAGGCTGT S0170B06SP6-R GGAGAGACCCCAAGTCTTAT S0170B06T7-F ATTCAACACACCTGGTCTTC S0170B06T7-R GCAAACCTCTAAGCTTTCAA S0201A04SP6-F CAGAAGGATGAAAGAACACAATATGTCTGTCAGGGAATGC S0201A04SP6-R CATCTATCTACACGCTGCAA S0201A04T7-F ACAAACCCAATTTTGATAAACTCCCATATCTACTGGGTGA S0201A04T7-R AACGATGTACAAAATGGAAAA fps591 S0457C13_T7-F GAGGACTCACCAAGATCTCA S0457C13_T7-R TGCAGAGAGAGAAAGAGAGG S0457C13_SP6-F ATCTAGGCAGCATTTCAAAC S0457C13_SP6-R CCCTCTTTACTCACCCTCTT S0126K07_T7-F GTTAATGTGTGGCCTTTTTG S0126K07_T7-R TCTCTATTCAGCTCCAAAGC S0126K07_SP6-F AGAGAGACAAGCATGGAGAA S0126K07_SP6-R GAAGCCATGAATCACTAAGC S0081L04_SP6-R CTTCCCATAAATCGTACAGG S0081L20SP6-F GTCCTGTGACCGACTAGTGT S0076E15_T7-F GGTTCGTATCCCACTGTTT S0076E15_T7-R TCTGTGTGATGTTTGTGC S0076E15_SP6-F CATGTAAGTCAGATTTGTGAAA S0076E15_SP6-R TGATGATGTCATCGGGTAG S0042J22_T7-F GTGTCGTTATGGTTCTGGAT S0042J22_T7-R AAGAAAGCTGAACAATGAGC S0042J22_SP6-F TGTCATCGATGGAGAGACTA S0042J22_SP6-R TGTCAGTCTGGACTTCATCA S0119L01_SP6-F GTAATGGGATGGCAGTCTAA S0119L01_SP6-R CACCAGTCATCACCAGTACA S0119L01_T7-F AGTTGCACATCCCTGATTAC S0119L01_T7-R CGTTAAGCGATAAAGCAGAT