A Genomic View of Lactobacilli and Pediococci Demonstrates that Phylogeny Matches Ecology and Physiology

Supplemental material

• Supplemental file 1 -

  Comparison of the functional categories of genes lost in selected groups of Lactobacillus spp. and Pediococcus spp. (Fig. S1) and comparison of the number of genes coding for the EIIA component of PTS systems per genome (Fig. S2).

  PDF, 580K

• Supplemental file 2 -

  Species and strains used in the study, origins of strains, and genome features (Table S1).

  XLSX, 37K

• Supplemental file 3 -

  List of 172 single-copy core genes for phylogenomic analysis (Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842) (Table S2).

  XLSX, 15K

• Supplemental file 4 -

  Query sequences with references for analysis of presence and absence of metabolic genes (Table S3).

  XLSX, 20K

• Supplemental file 5 -

  Average nucleotide identity pairwise comparisons among analyzed strains (Table S4).

  XLSX, 150K