Supplemental Table 2. Liberman et al 2015 PNAS. Gene Ontology (GO) terms from differentially expressed genes using whole root from myb36 vs wild-type roots,,,,,,,,,,,
"GO term analysis of differentially expressed genes using GOrilla (http://cbl-gorilla.cs.technion.ac.il) All terms were reported that satisfied these criteria: P-value 1E-04, minimum of 5 genes per term.",,,,,,,,,,,
"Enrichment (N, B, n, b) is defined as follows: N - is the total number of genes detected, B - is the total number of genes associated with a specific GO term, n - is the number of genes in the target set, b - is the number of genes in the intersection. Enrichment = (b/n) / (B/N)",,,,,,,,,,,
,,,,,,,,,,,
Direction of regulation,GO Term,Description,P-value,FDR q-value,Enrichment,N,B,n,b,Genes,Ontology
Down,GO:0007043,cell-cell junction assembly,3.52E-11,8.55E-08,120.91,12937,5,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Biological Process
Down,GO:0034329,cell junction assembly,2.10E-10,2.55E-07,100.76,12937,6,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Biological Process
Down,GO:0034330,cell junction organization,2.10E-10,1.70E-07,100.76,12937,6,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Biological Process
Down,GO:0045216,cell-cell junction organization,2.10E-10,1.27E-07,100.76,12937,6,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Biological Process
Down,GO:0042803,protein homodimerization activity,7.30E-10,7.84E-07,86.36,12937,7,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Molecular Function
Down,GO:0046983,protein dimerization activity,7.30E-10,3.92E-07,86.36,12937,7,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Molecular Function
Down,GO:0042802,identical protein binding,1.56E-08,5.60E-06,54.96,12937,11,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Molecular Function
Down,GO:0048226,Casparian strip,3.52E-11,1.07E-08,120.91,12937,5,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Cellular Component
Down,GO:0044426,cell wall part,3.52E-11,5.34E-09,120.91,12937,5,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Cellular Component
Down,GO:0044462,external encapsulating structure part,3.52E-11,3.56E-09,120.91,12937,5,107,5,"[AT3G11550  -  hypothetical protein, AT5G06200  -  hypothetical protein, AT2G36100  -  casparian strip membrane protein 1, AT2G27370  -  hypothetical protein, AT5G15290  -  casparian strip membrane protein 5]",Cellular Component
Down,GO:0005576,extracellular region,1.61E-06,1.22E-04,2.99,12937,929,107,23,"[AT1G23740  -  alkenal/one oxidoreductase, AT5G58780  -  z,e-mixed heptaprenyl diphosphate synthase, AT4G38690  -  1-phosphatidylinositol phosphodiesterase-related protein, AT2G39430  -  disease resistance-responsive (dirigent-like protein) family protein, AT4G37030  -  hypothetical protein, AT4G08160  -  putative glycosyl hydrolase family 10 protein, AT3G45840  -  cysteine/histidine-rich c1 domain family protein, AT5G26260  -  traf-like family protein, AT2G22620  -  rhamnogalacturonate lyase-like protein, AT5G42180  -  peroxidase, AT2G46740  -  d-arabinono-1,4-lactone oxidase-like protein, AT2G45040  -  matrixin family protein, AT4G16190  -  papain family cysteine protease, AT2G05540  -  glycine-rich protein, AT2G40113  -  pollen ole e 1 allergen and extensin family protein, AT3G55230  -  disease resistance-responsive, dirigent domain-containing protein, AT1G54010  -  gdsl esterase/lipase, AT4G11210  -  disease resistance-responsive, dirigent domain-containing protein, AT2G41480  -  putative peroxidase, AT4G07820  -  cysteine-rich secretory proteins, antigen 5 and pathogenesis-related protein 1 domain-containing protein, AT2G19970  -  putative pathogenesis-related protein, AT1G44970  -  peroxidase 9, AT4G16270  -  peroxidase 40]",Cellular Component
Up,GO:0001666,response to hypoxia,8.95E-05,5.43E-02,10.82,12937,36,166,5,"[AT1G26380  -  fad-binding and bbe domain-containing protein, AT1G14550  -  peroxidase 5, AT1G14540  -  peroxidase 4, AT5G15120  -  hypothetical protein, AT2G23270  -  hypothetical protein]",Biological Process
Up,GO:0036293,response to decreased oxygen levels,8.95E-05,4.34E-02,10.82,12937,36,166,5,"[AT1G26380  -  fad-binding and bbe domain-containing protein, AT1G14550  -  peroxidase 5, AT1G14540  -  peroxidase 4, AT5G15120  -  hypothetical protein, AT2G23270  -  hypothetical protein]",Biological Process
Up,GO:0009723,response to ethylene,9.24E-05,3.74E-02,6.57,12937,83,166,7,"[AT1G26380  -  fad-binding and bbe domain-containing protein, AT3G28580  -  aaa-type atpase family protein, AT5G44990  -  glutathione s-transferase family protein, AT5G65600  -  concanavalin a-like lectin kinase-like protein, AT5G19880  -  peroxidase, AT2G23270  -  hypothetical protein, AT5G25190  -  ethylene-responsive transcription factor erf003]",Biological Process
Up,GO:0004601,peroxidase activity,8.87E-12,9.53E-09,15.85,12937,59,166,12,"[AT4G08780  -  peroxidase 38, AT4G08770  -  putative apoplastic peroxidase prx37, AT2G38390  -  peroxidase 23, AT1G49570  -  peroxidase, AT4G36430  -  peroxidase 49, AT3G49960  -  peroxidase 35, AT5G05340  -  peroxidase 52, AT5G19880  -  peroxidase, AT1G14550  -  peroxidase 5, AT1G14540  -  peroxidase 4, AT5G39580  -  peroxidase 62, AT2G18150  -  peroxidase 15]",Molecular Function
Up,GO:0016684,"oxidoreductase activity, acting on peroxide as acceptor",8.87E-12,4.76E-09,15.85,12937,59,166,12,"[AT4G08780  -  peroxidase 38, AT4G08770  -  putative apoplastic peroxidase prx37, AT2G38390  -  peroxidase 23, AT1G49570  -  peroxidase, AT4G36430  -  peroxidase 49, AT3G49960  -  peroxidase 35, AT5G19880  -  peroxidase, AT5G05340  -  peroxidase 52, AT1G14550  -  peroxidase 5, AT1G14540  -  peroxidase 4, AT5G39580  -  peroxidase 62, AT2G18150  -  peroxidase 15]",Molecular Function
Up,GO:0016209,antioxidant activity,2.02E-11,7.24E-09,14.84,12937,63,166,12,"[AT4G08780  -  peroxidase 38, AT4G08770  -  putative apoplastic peroxidase prx37, AT2G38390  -  peroxidase 23, AT1G49570  -  peroxidase, AT4G36430  -  peroxidase 49, AT3G49960  -  peroxidase 35, AT5G19880  -  peroxidase, AT5G05340  -  peroxidase 52, AT1G14550  -  peroxidase 5, AT1G14540  -  peroxidase 4, AT5G39580  -  peroxidase 62, AT2G18150  -  peroxidase 15]",Molecular Function
Up,GO:0003824,catalytic activity,1.70E-07,4.55E-05,1.85,12937,2660,166,63,"[AT1G49570  -  peroxidase, AT5G02760  -  putative protein phosphatase 2c 67, AT2G24130  -  putative leucine-rich repeat receptor-like serine/threonine-protein kinase, AT3G55090  -  abc transporter g family member 16, AT1G48100  -  polygalacturonase, AT2G39350  -  abc transporter g family member 1, AT4G24170  -  atp binding microtubule motor family protein, AT4G29450  -  leucine-rich repeat protein kinase-like protein, AT3G26840  -  phytyl ester synthesis and diacylglycerol acyltransferase activity protein, AT3G46370  -  leucine-rich repeat protein kinase-like protein, AT4G36430  -  peroxidase 49, AT1G61390  -  g-type lectin s-receptor-like serine/threonine-protein kinase, AT3G49960  -  peroxidase 35, AT1G12200  -  putative flavin monooxygenase., AT5G65600  -  concanavalin a-like lectin kinase-like protein, AT2G16890  -  udp-glycosyltransferase 90a1, AT2G37700  -  protein cer1-like 2, AT1G56680  -  chitinase family protein, AT1G56670  -  gdsl esterase/lipase lip-4, AT1G28590  -  gdsl esterase/lipase, AT1G28600  -  gdsl esterase/lipase, AT3G50400  -  gdsl esterase/lipase, AT5G05340  -  peroxidase 52, AT5G19880  -  peroxidase, AT3G13610  -  feruloyl coa ortho-hydroxylase 1, AT4G03140  -  nad(p)-binding rossmann-fold superfamily protein, AT3G46340  -  putative receptor-like protein kinase, AT1G11330  -  g-type lectin s-receptor-like serine/threonine-protein kinase, AT1G78950  -  beta-amyrin synthase, AT3G02620  -  acyl-[acyl-carrier-protein] desaturase, AT3G51680  -  short-chain dehydrogenase reductase 2a, AT1G24430  -  hxxxd-type acyl-transferase-like protein, AT1G14550  -  peroxidase 5, AT2G37360  -  abc transporter g family member 2, AT1G14540  -  peroxidase 4, AT5G39580  -  peroxidase 62, AT5G66460  -  mannan endo-1,4-beta-mannosidase 7, AT4G08780  -  peroxidase 38, AT4G08770  -  putative apoplastic peroxidase prx37, AT1G11410  -  g-type lectin s-receptor-like serine/threonine-protein kinase, AT1G50090  -  putative branched-chain-amino-acid aminotransferase 7, AT3G28580  -  aaa-type atpase family protein, AT2G38390  -  peroxidase 23, AT1G21120  -  o-methyltransferase family protein, AT3G55700  -  udp-glycosyltransferase 76f1, AT4G12840  -  hypothetical protein, AT5G63560  -  hxxxd-type acyl-transferase-like protein, AT1G06350  -  delta-9 desaturase-like 4 protein, AT5G55180  -  o-glycosyl hydrolases family 17 protein, AT4G01700  -  chitinase family protein, AT2G31790  -  udp-glycosyltransferase 74c1, AT5G37690  -  gdsl esterase/lipase, AT5G45950  -  gdsl esterase/lipase, AT4G08990  -  dna (cytosine-5-)-methyltransferase, AT5G45960  -  gdsl esterase/lipase, AT3G48460  -  gdsl esterase/lipase, AT2G18150  -  peroxidase 15, AT5G43690  -  sulfotransferase 1, AT1G18410  -  kinesin motor domain-containing protein, AT2G43600  -  chitinase-like protein, AT2G43620  -  chitinase, AT2G18360  -  esterase/lipase domain-containing protein, AT1G11920  -  putative pectate lyase]",Molecular Function
Up,GO:0016491,oxidoreductase activity,8.12E-07,1.74E-04,3.91,12937,359,166,18,"[AT4G08780  -  peroxidase 38, AT4G08770  -  putative apoplastic peroxidase prx37, AT1G49570  -  peroxidase, AT5G19880  -  peroxidase, AT5G05340  -  peroxidase 52, AT3G13610  -  feruloyl coa ortho-hydroxylase 1, AT4G03140  -  nad(p)-binding rossmann-fold superfamily protein, AT2G18150  -  peroxidase 15, AT2G38390  -  peroxidase 23, AT4G36430  -  peroxidase 49, AT3G02620  -  acyl-[acyl-carrier-protein] desaturase, AT1G12200  -  putative flavin monooxygenase., AT3G49960  -  peroxidase 35, AT3G51680  -  short-chain dehydrogenase reductase 2a, AT1G14550  -  peroxidase 5, AT5G39580  -  peroxidase 62, AT1G14540  -  peroxidase 4, AT1G06350  -  delta-9 desaturase-like 4 protein]",Molecular Function
Up,GO:0005576,extracellular region,3.94E-10,1.19E-07,3.1,12937,929,166,37,"[AT4G08780  -  peroxidase 38, AT4G08770  -  putative apoplastic peroxidase prx37, AT1G49570  -  peroxidase, AT1G48100  -  polygalacturonase, AT5G10130  -  pollen_ole_e_i-domain containing protein, AT2G23270  -  hypothetical protein, AT2G38390  -  peroxidase 23, AT4G36430  -  peroxidase 49, AT3G49960  -  peroxidase 35, AT1G64160  -  dirigent-like protein dir5, AT5G38540  -  mannose-binding lectin superfamily protein, AT1G56680  -  chitinase family protein, AT1G56670  -  gdsl esterase/lipase lip-4, AT4G01700  -  chitinase family protein, AT1G28590  -  gdsl esterase/lipase, AT1G28600  -  gdsl esterase/lipase, AT3G50400  -  gdsl esterase/lipase, AT3G13650  -  disease resistance-responsive, dirigent domain-containing protein, AT5G45950  -  gdsl esterase/lipase, AT5G19880  -  peroxidase, AT5G05340  -  peroxidase 52, AT5G37690  -  gdsl esterase/lipase, AT5G45960  -  gdsl esterase/lipase, AT3G48460  -  gdsl esterase/lipase, AT2G18150  -  peroxidase 15, AT4G32460  -  hypothetical protein, AT2G43600  -  chitinase-like protein, AT2G18370  -  non-specific lipid-transfer protein 8, AT2G43620  -  chitinase, AT1G80240  -  hypothetical protein, AT4G36010  -  pathogenesis-related thaumatin family protein, AT1G14550  -  peroxidase 5, AT1G74010  -  strictosidine synthase-like protein, AT1G14540  -  peroxidase 4, AT5G39580  -  peroxidase 62, AT5G66460  -  mannan endo-1,4-beta-mannosidase 7, AT1G11920  -  putative pectate lyase]",Cellular Component