parameters: bowtie2_presets: title: Presets mapper: bowtie2 define: ["--very-fast", "--fast", "--sensitive", "--very-sensitive", "--very-fast-local", "--fast-local", "--sensitive-local", "--very-sensitive-local"] bowtie2_exhaustive: title: Exhaustive mapper: bowtie2 generate: - ["-D 5","-D 15","-D 30"] - ["-R 1","-R 5","-R 20"] - ["-L 15", "-L 20", "-L 30"]