Sinorhizobium meliloti Phage ΦM9 Defines a New Group of T4 Superfamily Phages with Unusual Genomic Features but a Common T=16 Capsid

Supplemental material

• Supplemental file 1 -

  Table S1 (Phages that infect nitrogen-fixing rhizobial bacteria and agrobacteria for which the complete genome has been deposited in GenBank.)

  Table S2 (GenBank accession numbers and references for 104 sequences from T4-like phages that are homologous to a 179-amino-acid internal fragment of ΦM9 portal vertex protein gp20.)

  Table S3 (GenBank accession numbers of T4-like phage universal core and nearly universal core gene products from ΦM9 and 12 other phages.)

  Table S4 (ΦM9 predicted proteins with homologs in phage ΦM12, not including T4 core proteins.)

  Table S5 (ΦM9 predicted homing endonucleases.)

  Table S6 (GenBank accession numbers and references for sigma factor protein sequences compared in the alignment in Fig. S3.)

  References, supplemental tables

  Fig. S1 (Fourier shell correlation shows that the overall resolution of the phiM9 capsid at FSC 0.143 is about 7.53 Å and at FSC 0.5 is about 8.97 Å.)

  Fig. S2 (gp20 tree showing tree topology when Caulobacter phage Cr30 is omitted.)

  Fig. S3 (Alignments of ΦM9 sigma factor ORF ΦM9_087 amino acid sequence with those of other sigma factors.)

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