This PDF file includes:

• Legends for movies S1 to S4

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Other Supplementary Material for this manuscript includes the following:

• Movie S1 (.mov format). Dynamics of the self-propelled particles in the absence of any external flow and shear.
• Movie S2 (.mov format). Dynamics of the self-propelled particles under shear, at slow flow (V* = 4 μm/s) and for a self-propulsion velocity of the particles (V₀ = 8 μm/s).
• Movie S3 (.mov format). Dynamics of the self-propelled particles under shear, at fast flow (V* = 20 μm/s) and the self-propulsion velocity of the particles (V₀ = 8 μm/s).
• Movie S4 (.mov format). Organization of the particles in a diverging flow.