#NEXUS [Freedman Fowler and Horner, 2015, Supplementary file 3] [Formatted for PAUP 4.0b10 for MAC OS X] [Matrix is modified from nexus file of Prieto-M‡rquez 2010 with character states for Probrachylophosaurus bergei added, as well as eight recodings for Acristavus (characters 106, 116-121, 259) and one for Brachylophosaurus (character 138). Three characters (1, 15, 123) are excluded. States of character 143 were changed for all taxa: the original three states (0 1 2) were reduced to two (0 1) by combining states 0 & 1 into 0, thus changing state 2 to 1. See main text for details.] [Most hadrosauroid and lamebeosaurine taxa are excluded from Prieto-M‡rquez's 2010 matrix in order to simplify analysis and make taxon list more consistent with that of Gates et al. 2011.] [Prieto-M‡rquez, A. 2010. Global phylogeny of Hadrosauridae (Dinosauria: Ornithopoda) using parsimony and Bayesian methods. Zoological Journal of the Linnean Society, 159:435-502.] BEGIN TAXA; DIMENSIONS NTAX=19; TAXLABELS Iguanodon_bernissartensis Hadrosaurus_foulkii Bactrosaurus_johnsoni Wulagasaurus_dongi Brachylophosaurus_canadensis Probrachylophosaurus_bergei Maiasaura_peeblesorum Acristavus_gagslarsoni Corythosaurus_casuarius Edmontosaurus_annectens Edmontosaurus_regalis Kritosaurus_navajovius Gryposaurus_notabilis Gryposaurus_latidens Gryposaurus_monumentensis Prosaurolophus_maximus Secernosaurus_koerneri Saurolophus_osborni Saurolophus_angustirostris; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=370; FORMAT SYMBOLS= " 0 1 2 3 4 5 6 7" MISSING=? GAP=- ; CHARSTATELABELS 1 dtth1, 2 dtth3, 3 dtth4, 4 dtth5, 5 dtth6, 6 dtth7, 7 dtth8, 8 dtth9, 9 dtth10, 10 dtth11, 11 dtth12, 12 dtth13, 13 dtth14, 14 dtth15, 15 mxth1, 16 mxth3, 17 mxth4, 18 mxth5, 19 mxth6, 20 mxth7, 21 mxth8, 22 pdt1, 23 pdt2, 24 pdt3, 25 pdt4, 26 pdt5, 27 pdt6, 28 pdt7, 29 pdt8, 30 pdt9, 31 pdt11, 32 pdt13, 33 dt1, 34 dt2, 35 dt3, 36 dt4, 37 dt5, 38 dt6, 39 dt7, 40 dt9, 41 dt10, 42 dt11, 43 dt12, 44 dt13, 45 dt14, 46 dt15, 47 dt16, 48 dt17, 49 dt18, 50 dt19, 51 sa1, 52 sa2, 53 sa3, 54 sa4, 55 sa5, 56 sa6, 57 ang, 58 cob, 59 prar, 60 pmx1, 61 pmx2, 62 pmx3, 63 pmx5, 64 pmx6, 65 pmx7, 66 pmx8, 67 pmx9, 68 pmx10, 69 pmx11, 70 pmx12, 71 pmx13, 72 pmx14, 73 pmx15, 74 pmx16, 75 ns1, 76 ns2, 77 ns3, 78 ns4, 79 ns5, 80 ns6, 81 ns7, 82 ns8, 83 ns9, 84 mx1, 85 mx2, 86 mx3, 87 mx4, 88 mx5, 89 mx6, 90 mx7, 91 mx8, 92 mx9, 93 mx10, 94 mx11, 95 mx12, 96 mx13, 97 mx14, 98 mx15, 99 mx16, 100 mx17, 101 lc1, 102 lc2, 103 j1, 104 j2, 105 j3, 106 j4, 107 j5, 108 j6, 109 j7, 110 j8, 111 j9, 112 j10, 113 j11, 114 j12, 115 j13, 116 q1, 117 q2, 118 q3, 119 q4, 120 q5, 121 q6, 122 pf1, 123 pf2, 124 pf3, 125 pf4, 126 pf5, 127 pf6, 128 po1, 129 po2, 130 po3, 131 po4, 132 po5, 133 po6, 134 sq1, 135 sq2, 136 sq3, 137 sq4, 138 f1, 139 f2, 140 f3, 141 f4, 142 f5, 143 f6, 144 f7, 145 f8, 146 f9, 147 par1, 148 par2, 149 par3, 150 par4, 151 bo1, 152 bo2, 153 bo3, 154 bs1, 155 bs2, 156 bs3, 157 bs4, 158 bs5, 159 ls1, 160 ls2, 161 so1, 162 so2, 163 ex1, 164 ex2, 165 plt1, 166 plt2, 167 plt3, 168 rst2, 169 nps1, 170 nps2, 171 nps3, 172 nps4, 173 nps5, 174 nps6, 175 nps7, 176 nps8, 177 nps9, 178 cmn1, 179 cmn2, 180 cmn3, 181 crs1, 182 crs2, 183 crs3, 184 crs4, 185 crs5, 186 crs6, 187 plp, 188 orb, 189 pqf, 190 itf1, 191 itf2, 192 itf3, 193 stf, 194 sk1, 195 sk2, 196 sk3, 197 crv1, 198 crv2, 199 crv3, 200 drs1, 201 drs2, 202 scr, 203 cdl, 204 st, 205 cor1, 206 cor2, 207 cor3, 208 cor4, 209 cor5, 210 cor6, 211 scp1, 212 scp2, 213 scp4, 214 scp5, 215 scp6, 216 scp7, 217 scp8, 218 scp9, 219 hm1, 220 hm2, 221 hm3, 222 hm4, 223 ul1, 224 ul2, 225 mn1, 226 mn2, 227 mn3, 228 mn4, 229 mn6, 230 mn7, 231 mn8, 232 il1, 233 il3, 234 il4, 235 il5, 236 il6, 237 il7, 238 il8, 239 il9, 240 il10, 241 il11, 242 il12, 243 il13, 244 il14, 245 il15, 246 il16, 247 il17, 248 il18, 249 il19, 250 il20, 251 il21, 252 pb1, 253 pb2, 254 pb3, 255 pb4, 256 pb5, 257 pb6, 258 pb7, 259 pb8, 260 pb9, 261 pb10, 262 pb11, 263 is1, 264 is2, 265 is3, 266 is4, 267 is5, 268 is6, 269 is7, 270 is8, 271 is9, 272 is10, 273 is11, 274 is12, 275 fm1, 276 fm2, 277 tb, 278 fb, 279 as, 280 dsts, 281 pes1, 282 pes2, 283 pes3, 284 pes4, 285 pes6, 286 pes7, 287 Ig1, 288 Ig2, 289 Ig3, 290 Mt1, 291 Mt2, 292 Eq1, 293 Eq2, 294 Eq3, 295 Eq4, 296 Pt1, 297 Pt2, 298 Ba1, 299 Ba2, 300 Te1, 301 Te2, 302 Te3, 303 Te4, 304 Te5, 305 Wu1, 306 Wu2, 307 Wu3, 308 Sy1, 309 Sy2, 310 Sy3, 311 Am1, 312 Am2, 313 Am3, 314 Ar1, 315 Ar2, 316 Br1, 317 Ma1, 318 Ma2, 319 Ch1, 320 Ch2, 321 Cos1, 322 Cos2, 323 Coi1, 324 Coi2, 325 Hy1, 326 Hy2, 327 Hy3, 328 Lmm1, 329 Lmm2, 330 Lmm3, 331 Kb1, 332 Kb2, 333 Kb3, 334 Kb4, 335 Kb5, 336 Np1, 337 Np2, 338 Ve1, 339 Ve2, 340 Kr1, 341 Kr2, 342 Grl1, 343 Grn1, 344 Grm1, 345 Grm2, 346 Ol1, 347 Ol2, 348 Ol3, 349 Ol4, 350 Ol5, 351 Paw1, 352 Paw2, 353 Pac1, 354 Pac2, 355 Pac3, 356 Pat1, 357 Pat2, 358 Pat3, 359 Pr1, 360 Pr2, 361 Se1, 362 Ph1, 363 Ts1, 364 Ts2, 365 Ts3, 366 Ts4, 367 Ts5, 368 Ta1, 369 Lh1, 370 Lh2 ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Iguanodon_bernissartensis 00000000000000000000000000000000001000010000100000000000011000000000000000000000000000000000000000000100000-01001001000100000000001101000?000-000?1000000?00010000000?0001-00--0010-00----1010000000000101000000000000000000010000001001010000000011100000000000000001100000011000000000100000111000000000000000000000000000000000000000000000000000000000000000000000000000000000 Hadrosaurus_foulkii ???13101110011???1101?????????????????????????????????????????????????????????????????????????????2??????????????????????????????????????????????????????????????????????????????????????-????????????????????????????????000110???????120123??012????10111?????11????0111?00?0---111???0????????????????????????????????????????????????????????????????????????????????????????? Bactrosaurus_johnsoni 011(12)10022?00110111(01)01001000101000121110120(01)01000110110101001001000000000000000?000-0?0100101000010110000000-021000101111000000000001110001100-0000100011000111001001??100?-?0--0010-00----1010000?0?00?1?0?102000000100101010100??10?1?12001101011(01)110001000?12001111111111102100111100?01101000000000000110000000000000000000000000000000000000?000000000000?00000000000000000000 Wulagasaurus_dongi 1???????????????????????????????11101{01}?121??01?121???????????????????????????????????0?01??211??2221??01?010??????1??????????????????????????????????????????????????????????????????????-?????????????????1??????110?1-??1211???????????????????????????????????????????1???00????????????????????0???000?00000111?0?0???0??0????????????000?0??0????0????00??????????0?0?????0?? Brachylophosaurus_canadensis 122231122?001111211(01)120211112211312(012)(012)111211101112111110010021311010000000000111000-010100202111122210001111012211(01)10112110000100(01)(01)(12)110011001010000201011111112001111101(12)00-10--0113010-2--0101100(01)0111110111121121111(01)1-0110111211112111201220311210001111112111111111011122110---111001011011000000000000000000000000000001000000000000000000000000000000000000000000000000000000 Probrachylophosaurus_bergei 2222311222001121?11112?2????{12}{23}?1202211112110011121111100?0???3????0???????00????00?0?0100202111?2221000110101121201011211??????0?1??1002?00101000?20?0111?111?0?11{12}1??1?0?-?0--01??010-2--01?11?00?1?1?10?1????????????????????????????1201220{23}11??00011111121?111111?01??221???????10????????0????00??0000?0???00????0???0???0?00000?0000???000?000?????0?00?000000000?0000?????? Maiasaura_peeblesorum 122231122?001111211??2021111221120211011211101112111110010021311010000000000111000-0101002021111222100011110122110100121100011000(01)11100210000-000?(12)01011111112001111101100-00--0112011-4--01011000011111011?1211?111111-01101111111?2111201220311210001111112111111111011122110---11100101?011000000000000000000000000000000110000000000000000000000000000000000000000000000000000 Acristavus_gagslarsoni 122231121?00111121111???????????202(01)0{01}11211?0111211111001002?3?1010000000000???000-0?0100202111?222100011010122110101121101000001??1110210000-00001000111111120?1111??1?0?-?0--011??00----010110010?????????????????????????1?11???????????????????????????????111111?????????????11??????????0????000000000000000000000000000000000??0000000?00?000??0?00000?00000000000000000000 Corythosaurus_casuarius 1222211210111111211??01312111310111(12)(01)111211001112111111110011110000112101-214--100-1-001121211212321102121101(01)101111000012010021010111121101011111011111100110001101001(01)1-0-100120--1206210101021011011111011211111111010022101211111111201231201210001111101101111111211112021010111111010110000000000000000000000000000000000011000000000000000000000000000000000000000000000000 Edmontosaurus_annectens 232131(01)222001121211?21(01)111?11411(23)100(01)0103(12)1001112111110010021311111000000000221010-010001202111123210011001010302110112(01)101000001201110111000-0000202011110111011121011000-10--0111100----01011001010110011112112111111-01(12)111(01)111111111211231211210001111113101111012012122(01)00---111001011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Edmontosaurus_regalis 23223102220011212110210111?11411(23)100(01)0103(12)1001112111110010021311111000000000221010-0100012021111232100110010103021101120101000001201110111000-0000202011110111011121011000-10--0111100----01011000010110011112111111111-0121111111111111201231211210001111113101111011012121100---111001001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Kritosaurus_navajovius 1222210?2?0011212110?001??11021?00120011211001112111110?100????????000000000010010-000201202111?23210011101002311010112110100000011102001?000-000?101011110111001121?01?0?-?0--0112010-5--010(01)010011?1???????????????????????????????????????????2????????????????????????????????????????????0????000000000000000?00000?00000000000??0000000000?001100?00000?00000000000000000000 Gryposaurus_notabilis 132121012?001111211??00200010410(12)02(12)(01)01121100111211111001001121101000000010001000110002013021110232101111011013110201121101000000111020111000-00002000111?0111001121001201-30--0111010-1--01000100110110011112111110011-111(12)1(12)111111111111121121122???111?11411111???2011122100---111101001110000000000000000000000000000000000000000000000000000000001000000000000000000000000000 Gryposaurus_latidens 132031111000111?211?????????????21222011211001112111110010021211??0000000?000100??000020130211102321??????1??????????????0??0?0?0????20????00?????????????????????????1?0?-?0--0111010-1--0?0?0?????01?0?11112111110011-111(01)1201??1????11?121120122000111111411111?012????????0---???1??????10?00?0?0??0??00????000??????0?000??000000?000???00??00??100?0??0?0000000000000?00??0? Gryposaurus_monumentensis 1321310?2?00111121102001110104102022101121?0011121111100100112110100000001000100011000201302111023210111101?123111201121101000000111020?11000-000?20?011?1?1110011?1001201-30--0111010-1--0101010011?????????????????????????????????????????????2?????????????????????????????---????????????0????000000000000000?00000000000000000000000000000?000000110000?000?0000000000000000 Prosaurolophus_maximus 232231012?0011212110?00(23)11011411110(01)00103(12)1001112111110010021211010000000000221010-000(01)0120211102321011100110(01)300120111010101(01)00111112011?000-000020101111011000112100?102-20--0112110-5--0101100(01)11?110011112112111111-11111(12)1111111111211(23)21201220001111114011112012012122110---111001011110000000000000000000000000000000000000000000000000000000000000000000000000110000000000 Secernosaurus_koerneri 12?2310?2?001111?110????11??????002111112?100?112??1?1??100?????????0??????????000-0?0201302????2121?????????????????????010000000????0?11000-?0002010111101?0001121??????-?0--0?????????-0?????0?1??1?1???111011110011-11????1???1????1111210201211311111114011112012012122120---111???00??????0?0?0??????0000000?00?0000?0??000000???000000?00?00???0?00000?00000000?01000??00?0 Saurolophus_osborni 232231012?0011212110?0031101041?21000010311001112111110010011211010001000000221000-0001012021110232101110011003001(12)011101000110121211212100011100??1?0111?01?0001121001102-20--0113110-3--010110?1111110111?12112111111-01?21{01}01111??11121132121122000111?11411111??1101?1???10---111001001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Saurolophus_angustirostris 2321310?2?001121211??00211010411(12)1000010311001112111110010011211010001000000221000-0001012021110232101110010003001(12)011101000110121211212100011100?2010111?0??0001121??1102-20--0113110-3--01011001111110111112112111111-01221001111?111121132121122000111?11411111??11012112010---111?01001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000 ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; TYPESET * UNTITLED = unord: 2 4-14 16 18-370, ord: 1 3 15 17; END; begin paup; log file=PM2010sd_log.nex replace; outgroup Iguanodon_bernissartensis; set criterion=parsimony taxlabels=full torder=right maxtrees=5000 increase=no root=outgroup outroot=monophyl storebrlens=yes warnreset=no warntree=no warntsave=no warnroot=no warnredef=no autoclose=yes; [delete [taxa];] [exclude [characters];] exclude 1 15 123; hsearch start=stepwise hold=2 addseq=simple limitperrep=no usenonmin=yes swap=tbr steepest=yes multrees=yes; PSet opt=acctran; describetrees 1/ root=outgroup plot=phylogram apolist=yes; savetrees root=yes file=PM2010sd_tre.nex replace format=altnex brlens=yes; contree all/strict=yes semistrict=no majrule=no adam=no root=outgroup treefile=PM2010sd_tre.nex append=yes; bootstrap nreps=5000 grpfreq=no conlevel=50 search=heuristic/ addseq=random nreps=1 swap=TBR steepest=no multrees=yes; savetrees from=1 to=1 root=yes file=PM2010sd_tre.nex append=yes format=altnex savebootp=brlens; log stop; end;