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["Table S5 QTL summary"]
[null,null,"Glasshouse Trial",{"$nulls":5},"Field Trial"]
["Trait","LG1","QTL ID","LOD2","Variance3 (%)","Additive4","Position (cM)","Marker ID","QTL ID","LOD","Variance (%)","Additive","Position (cM)","Marker ID"]
["AO",3,"qAOX3.10",8.7482401636,30.15872,-0.0938242,90.45,"BYFS_0"]
[null,4,"qAOX4.8",3.8842859818,12.7279,-0.049018,169.05,"AYHC_0"]
[null,7,"qAOX7.2",3.2975100396,9.2467,0.0473539,126.37,"BLHX_2"]
[null,9,"qAOX9.7",5.2019418808,16.15856,-0.0627287,115.49,"BJBR_0"]
["Total chlorophyll",3,"qCHL3.11",7.276251955,25.04269,10.2808877,90.45,"BYFS_0"]
[null,7,"qCHL7.3",5.229224336,16.44294,-7.2535567,127.37,"BLHX_2"]
[null,9,"qCHL9.2",5.0088177398,15.29286,7.3274963,24.33,"AZLC_0"]
["Total carotenoids",3,"qCAR3.12",3.7333360512,12.66861,1.1042238,90.45,"BYFS_0"]
[null,7,"qCAR7.4",5.1841444522,18.97488,-1.2055197,126.37,"BLHX_2"]
["Total phenolics",4,{"$nulls":6},"qPH4.2",5.7057838516,32.92494,-10.851358,31.05,"BQGQ_0"]
[null,8,"qPH8.3",6.9585610472,36.35486,-9.4223782,67.12,"ASQF_0"]
["CTA1",1,"qCTA1.6",5.735236871,19.06243,-2.1634545,81.24,"BAXG_0"]
[null,5,"qCTA5.4",6.0375943201,18.96151,-2.1397047,43.17,"BWQW_0","qCTA5.3",3.2180306648,16.55652,-2.2859205,33.56,"CALP_0"]
[null,6,"qCTA6.5",7.4013719416,30.44887,-2.6017171,94.51,"BBRC_0","qCTA6.4",3.5029296176,19.1194,-2.9949934,73.94,"AFGO_0"]
["CTA2",1,"qCTA1.4",6.369654165,19.56546,-24.3308829,77.5,"AUDJ_0"]
[null,5,"qCTA5.6",6.7736997671,20.03752,-27.5777521,47.45,"CACQ_0"]
[null,6,"qCTA6.6",4.7979449735,12.8292,-26.3031352,94.51,"BBRC_0"]
["DCTA",4,"qDTA4.5",8.2472347734,47.89342,-162.959667,66.01,"ANOY_0"]
[null,4,"qDTA4.6",4.2039231626,17.31908,95.0389134,145.97,"AXBP_0"]
[null,4,"qDTA4.7",3.9453489789,15.92623,-114.2902838,164.75,"BJPA_0"]
[null,6,{"$nulls":6},"qDTA6.9",4.1622459907,16.54565,-96.6747389,117.89,"BFHM_1"]
["mDCTA",1,"qMDA1.7",4.5610714191,14.59217,-30.8359044,81.24,"BAXG_0"]
[null,2,"qMDA2.5",9.3091783281,36.78169,47.7032561,96.16,"ANIB_0"]
[null,3,"qMDA3.15",4.1788021576,15.42967,39.357276,130.14,"BRVA_0"]
[null,4,"qMDA4.4",5.4610105207,19.60461,-32.9662863,56.59,"ANEH_0"]
[null,9,{"$nulls":6},"qMDA9.3",5.1329875919,23.64894,-40.4370671,76.43,"AFES_0"]
["CMA",1,"qCMA1.8",4.451500459,12.42072,5.2209386,114.37,"BFPM_0"]
[null,3,"qCMA3.14",7.035815521,24.47243,-18.996021,122.13,"AIID_0"]
[null,4,{"$nulls":6},"qCMA4.15",5.0166202786,19.18764,-7.2944625,232.23,"AADB_0"]
[null,5,{"$nulls":6},"qCMA5.2",3.9118090249,13.78407,6.4292619,29.81,"BTNJ_0"]
[null,6,{"$nulls":6},"qCMA6.15",4.5306494513,16.67061,6.9554259,138.61,"BHPB_0"]
[null,8,"qCMA8.7",4.2341418448,11.62063,5.2694524,185.17,"AZQR_0"]
["CQA1",3,"qCQA3.5",3.760626058,17.88534,-27.427796,60.78,"BRNV_0"]
[null,6,"qCQA6.10",4.8143658192,24.96614,31.6406931,121.43,"AGAL_0"]
["CQA2",4,{"$nulls":6},"qCQA4.10",3.5392991431,13.35475,-36.3055482,218.94,"BDZD_0"]
[null,6,"qCQA6.12",6.6105209968,26.80288,9.9394187,123.65,"BHAX_0"]
[null,7,{"$nulls":6},"qCQA7.1",4.331893097,15.8221,-39.5594296,119.43,"BIJT_0"]
[null,9,"qCQA9.1",8.6937805633,42.36866,16.4871367,13.31,"BGQX_0"]
["CQA3",2,"qCQA2.1",3.4414569245,13.6097,-0.3180634,24.11,"AUNV_0"]
[null,4,{"$nulls":6},"qCQA4.11",4.2024475409,17.35252,-9.4550384,218.94,"BDZD_0"]
[null,6,"qCQA6.8",5.4392093553,24.81976,0.3950396,114.76,"BLCL_0"]
["DCQA",4,{"$nulls":6},"qDQA4.12",8.5801714936,33.15808,-10.0350842,222.23,"BJJW_0"]
[null,5,"qDQA5.7",4.4662849294,19.47429,-3.3777105,44.97,"AYNY_0"]
[null,8,"qDQA8.9",6.7410654843,37.82925,4.67868,192.73,"BCKQ_0"]
["3.5-DCQA",2,"qDA2.4",6.0478940081,23.97625,25.7424891,90.32,"AXNC_0"]
[null,3,"qDA3.4",5.1614031343,18.4857,-23.9101699,52.22,"AYIC_0"]
[null,4,{"$nulls":6},"qDA4.13",8.2042452723,24.29171,-60.1295337,221.23,"BJJW_0"]
[null,5,"qDA5.5",7.3450196022,31.73006,31.8527578,44.97,"AYNY_0"]
["5-CoQA2",2,"qCOQ2.2",3.7017823416,11.36752,-1.7666569,37.27,"ANAQ_0"]
[null,3,"qCOQ3.6",6.3673846705,25.12185,-2.6778837,76.46,"BHEW_0"]
[null,4,"qCOQ4.3",3.7431970954,11.54813,-1.718068,38.65,"BKIS_0"]
[null,6,"qCOQ6.3",5.7179125024,20.1905,-2.314287,53.69,"ASEI_0"]
["Q-3G",1,{"$nulls":6},"qQG1.1",3.9088014266,12.00166,6.2201802,9.34,"ASCC_0"]
[null,3,"qQG3.13",3.4810141583,16.50134,-9.3109874,101.02,"BWTL_0","qQG3.3",6.4777921222,22.48881,8.4531243,41.2,"BVZI_0"]
[null,5,"qQG5.1",3.7197942964,18.70931,6.1781285,28.64,"AKSH_0","qQG5.10",5.193792142,17.25351,7.6991367,225.3,"AVYO_0"]
[null,8,{"$nulls":6},"qQG8.6",3.4237024402,10.28905,-6.6084268,163.34,"BTHF_0"]
["Q-3Gc",2,"qQGC2.3",5.0813038556,25.86957,53.5052496,91.32,"AXNC_0"]
[null,3,{"$nulls":6},"qQGC3.1",3.8500249585,15.00948,52.7491646,24.82,"BLLJ_0"]
[null,4,"qQGC4.12",6.8643867362,31.98536,67.5498551,226.93,"AFSM_0"]
[null,8,{"$nulls":6},"qQGC8.1",4.4303063511,26.81488,-68.7511947,27.42,"ANVY_0"]
["Q-3MG",1,{"$nulls":6},"qQMG1.3",4.2758788653,15.24321,-46.4718861,50.01,"BOCX_0"]
[null,3,"qQGG3.2",4.1194187622,17.76135,-74.4155102,38.28,"BWQG_0","qQMG3.2",5.5494020421,24.15025,59.1306796,38.28,"BWQG_0"]
[null,5,{"$nulls":6},"qQMG5.8",5.176848131,21.36543,56.9847504,122.68,"AXKC_0"]
[null,9,"qQMG9.2",3.3947822643,32.93882,91.8257332,50.07,"AGCM_0","qQMG9.4",4.2203080731,16.75597,-47.2965172,110.94,"AAZK_2"]
["Q-3MG-7G",3,{"$nulls":6},"qQGG3.17",3.5838599195,9.71777,-7.818543,163.22,"BWXM_1"]
[null,6,{"$nulls":6},"qQGG6.13",5.5913102322,17.48756,11.723988,126.53,"AZTG_0"]
[null,8,"qQGG8.4",4.0694167976,21.42512,-17.9228479,93.9,"BMLU_0","qQGG8.2",7.7484781976,30.0144,-14.1687161,27.42,"ANVY_0"]
[null,9,"qQGG9.7",3.7103086839,14.83581,-15.6193198,124.23,"BTDC_0"]
["Q-3MG-7Gc",5,{"$nulls":6},"qQMC5.12",4.3319672459,16.9085,-12.6910573,231.08,"AUDR_0"]
[null,6,{"$nulls":6},"qQMC6.2",3.4812461096,12.69052,14.2849726,21.42,"AYOB_0"]
[null,8,{"$nulls":6},"qQMC58.5",4.8308179346,19.61383,-13.8932175,148.96,"BFBT_0"]
["L-7G",1,{"$nulls":6},"qLG1.2",5.0017665852,21.12122,4.4382574,23.83,"BGQU_0"]
[null,2,"qLG2.8",6.9526474283,31.71051,-4.0000679,129.97,"BBKH_0","qLG2.9",6.1943415359,28.28882,-5.112409,147.93,"AONU_0"]
["L-7Gc",4,"qLGC4.1",8.3361012861,40.31899,10.0317534,1.3,"BHRL_2"]
[null,5,{"$nulls":6},"qLGC5.11",5.5757970975,25.22666,5.7473863,225.3,"AVYO_0"]
[null,6,"qLGC6.11",6.2295562525,23.88588,7.2944208,121.43,"AGAL_0"]
["K-3Gc",3,"qKG3.7",6.4020696901,47.50373,-0.857307,83.51,"BLJX_0"]
[null,6,{"$nulls":6},"qKG6.1",5.5938357216,19.40352,-0.6667274,2.01,"BIFQ_0"]
["K-3MG",1,{"$nulls":6},"qKMG1.5",6.7711645778,21.32407,-3.8395526,82.24,"BAXG_0"]
[null,3,{"$nulls":6},"qKMG3.8",6.4581527759,19.4129,-3.8426245,85.05,"BHUW_0"]
[null,4,"qKMG4.9",3.89478978,21.95757,-3.4904391,172.05,"BCMA_0"]
[null,6,{"$nulls":6},"qKMG6.7",3.7698481674,10.67456,-2.8702244,108.51,"BNNW_0"]
[null,8,{"$nulls":6},"qKMG8.8",5.2265498544,14.86788,-3.1768964,187.63,"BWYM_0"]
[331,3,{"$nulls":6},"qMET3.16",3.5863380595,16.93854,-16.9108852,142.02,"ATNZ_0"]
[]
[null,null,"1 LG. Linkage group on which QTL was detected"]
[null,null,"2 LOD. Logarithm of odds score. 1 LOD = 0.217 LR"]
[null,null,"3 Variance. Percentage of phenotypic variance explained by the QTL"]
[null,null,"4 Additive. The additive effect is the effect of substituting a L.serriola allele for a L.sativa allele. Positive values  indicate that L.sativa increases the trait value and negative values indicate that L.serriola increases trait values. Position of the QTL peak given in centimorgans (cM) and marker closest to QTL stated."]

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