"Supplementary Data 6. R - Resistance, S - Susceptible" sample_set comid sra_accessions species Rifampicin Isoniazid Ethambutol Kanamycin Capreomycin Amikacin Streptomycin Ciprofloxacin Moxifloxacin Amoxicillin MTBC_A1 C00000575 ERR025839 tuberculosis S S S MTBC_A1 C00000581 ERR025846 tuberculosis S S S MTBC_A1 C00003749 ERR038257 tuberculosis S S S MTBC_A1 C00003757 ERR038265 tuberculosis S S S MTBC_A1 C00003758 ERR038266 tuberculosis S S S S S S MTBC_A1 C00003763 ERR038271 tuberculosis S S S MTBC_A1 C00003766 ERR038274 tuberculosis S S S S MTBC_A1 C00003767 ERR038275 tuberculosis S S S MTBC_A1 C00003772 ERR038280 tuberculosis S S S MTBC_A1 C00003780 ERR038288 tuberculosis S S S MTBC_A1 C00003781 SRR2100067 tuberculosis S S S MTBC_A1 C00003784 ERR038292 tuberculosis S S S MTBC_A1 C00003786 ERR038294 tuberculosis S S S S S S S R MTBC_A1 C00003798 ERR039328 tuberculosis S S S MTBC_A1 C00003817 ERR040086 tuberculosis S S S MTBC_A1 C00003819 ERR040088 tuberculosis S S S MTBC_A1 C00003823 SRR2100068 tuberculosis S S S MTBC_A1 C00003824 ERR040093 tuberculosis S S S MTBC_A1 C00003839 ERR040108 tuberculosis S S S S MTBC_A1 C00005264 ERR046729 tuberculosis S S S MTBC_A1 C00005266 SRR2100069 tuberculosis S S S MTBC_A1 C00005282 ERR046747 bovis S S S MTBC_A1 C00005283 ERR046748 bovis S S S S MTBC_A1 C00005284 ERR046749 bovis S S S MTBC_A1 C00005285 SRR2100072 bovis S S S MTBC_A1 C00005290 ERR046755 tuberculosis S S S MTBC_A1 C00005291 ERR046756 tuberculosis S S S MTBC_A1 C00005295 ERR046760 tuberculosis S S S MTBC_A1 C00005301 ERR046766 tuberculosis S S S MTBC_A1 C00005309 SRR2100074 bovis S S S MTBC_A1 C00005318 ERR046783 tuberculosis S S S MTBC_A1 C00005320 ERR046785 tuberculosis S S S MTBC_A1 C00005338 SRR2100077 tuberculosis S S S MTBC_A1 C00005354 ERR046819 tuberculosis S S S MTBC_A1 C00005356 ERR046821 tuberculosis R R S S R B MTBC_A1 C00005358 ERR046823 tuberculosis S S S MTBC_A1 C00005360 ERR046825 tuberculosis R S S S S S S MTBC_A1 C00005361 SRR2100088 tuberculosis S S S MTBC_A1 C00005366 ERR046831 tuberculosis S S S MTBC_A1 C00005369 ERR046834 tuberculosis S R S S MTBC_A1 C00005375 ERR046840 tuberculosis S S S MTBC_A1 C00005377 ERR046842 tuberculosis S S S S MTBC_A1 C00005379 ERR046844 tuberculosis S S S MTBC_A1 C00005381 ERR046846 tuberculosis S S S MTBC_A1 C00005385 ERR046850 tuberculosis S S S S MTBC_A1 C00005387 ERR046852 tuberculosis S S S MTBC_A1 C00005389 ERR046854 tuberculosis S S S MTBC_A1 C00005397 ERR046862 tuberculosis S S S MTBC_A1 C00005406 ERR046871 tuberculosis S S S MTBC_A1 C00005408 ERR046873 tuberculosis S S S S MTBC_A1 C00005413 ERR046878 tuberculosis S S S MTBC_A1 C00005417 ERR046882 tuberculosis S S S MTBC_A1 C00005422 ERR046887 tuberculosis S S S MTBC_A1 C00005425 ERR046890 tuberculosis S S S MTBC_A1 C00005438 ERR046903 tuberculosis R R R S S R MTBC_A1 C00005442 ERR046907 tuberculosis S S S S MTBC_A1 C00005448 ERR046913 tuberculosis S S R R MTBC_A1 C00005449 ERR046914 tuberculosis S S S MTBC_A1 C00005456 ERR046921 tuberculosis S S S MTBC_A1 C00005457 ERR046922 tuberculosis S S S MTBC_A1 C00005462 SRR2100104 tuberculosis S S S MTBC_A1 C00005467 ERR046932 tuberculosis S S S MTBC_A1 C00005468 ERR046933 africanum R MTBC_A1 C00005473 ERR046938 tuberculosis S S S MTBC_A1 C00005477 ERR046942 tuberculosis S S S MTBC_A1 C00005483 ERR046948 tuberculosis S S S MTBC_A1 C00005487 ERR046952 tuberculosis S S S MTBC_A1 C00005488 ERR046953 tuberculosis S S S S MTBC_A1 C00005489 ERR046954 bovis S S S MTBC_A1 C00005494 ERR046959 tuberculosis S S S MTBC_A1 C00005496 ERR046961 bovis S S S MTBC_A1 C00005499 ERR046964 tuberculosis S S S MTBC_A1 C00005502 ERR046967 tuberculosis S S S S MTBC_A1 C00005511 SRR2100096 tuberculosis S S S MTBC_A1 C00005518 ERR046983 tuberculosis S S S MTBC_A1 C00005520 SRR2100101 tuberculosis R R S S S MTBC_A1 C00005524 ERR046989 bovis S S S MTBC_A1 C00005526 ERR046991 tuberculosis S S S MTBC_A1 C00005538 ERR047003 tuberculosis S S S MTBC_A1 C00005544 ERR047009 tuberculosis S S S MTBC_A1 C00007277 ERR072029 tuberculosis S S S MTBC_A1 C00007280 ERR072032 tuberculosis S S S MTBC_A1 C00007287 ERR072039 tuberculosis S S S MTBC_A1 C00007290 ERR072042 tuberculosis S S S MTBC_A1 C00007294 ERR072046 tuberculosis S S S MTBC_A1 C00007295 ERR072047 tuberculosis S S S MTBC_A1 C00007296 ERR072048 tuberculosis S S S MTBC_A1 C00007306 SRR2100112 tuberculosis S S S MTBC_A1 C00007309 SRR2100115 tuberculosis S S S MTBC_A1 C00007321 SRR2100124 tuberculosis S S S MTBC_A1 C00007326 SRR2100128 tuberculosis S S S MTBC_A1 C00007334 SRR2100134 tuberculosis S S S MTBC_A1 C00008682 SRR2100157 tuberculosis S R S S MTBC_A1 C00008683 SRR2100158 tuberculosis S R S S MTBC_A1 C00008687 SRR2100160 tuberculosis S S S MTBC_A1 C00008689 SRR2100162 tuberculosis S S S MTBC_A1 C00008690 SRR2100163 tuberculosis S S S MTBC_A1 C00008692 SRR2100165 tuberculosis S S S MTBC_A1 C00008696 SRR2100168 tuberculosis S R S S MTBC_A1 C00008699 SRR2100169 tuberculosis S S S MTBC_A1 C00008700 SRR2100170 tuberculosis S S S MTBC_A1 C00008703 SRR2100173 tuberculosis S S S MTBC_A1 C00008711 SRR2100180 tuberculosis S S S MTBC_A1 C00008714 SRR2100183 africanum S S S MTBC_A1 C00008733 SRR2100198 tuberculosis S R S S MTBC_A1 C00008736 SRR2100201 tuberculosis S S S MTBC_A1 C00008737 SRR2100202 tuberculosis S S S MTBC_A1 C00008739 SRR2100204 tuberculosis S S S MTBC_A1 C00008741 SRR2100205 tuberculosis S S S MTBC_A1 C00008746 SRR2100210 tuberculosis S S S MTBC_A1 C00008750 SRR2467268 tuberculosis R S S MTBC_A1 C00008753 SRR2100216 tuberculosis S R S S MTBC_A1 C00008754 SRR2100217 tuberculosis R R S S S S S S S S MTBC_A1 C00008759 SRR2100222 tuberculosis S S S MTBC_A1 C00008760 SRR2100223 tuberculosis S S S MTBC_A1 C00008769 SRR2100229 tuberculosis S R S S MTBC_A1 C00008774 SRR2100234 tuberculosis R R R S MTBC_A1 C00008787 SRR2100246 tuberculosis R R S S S S S S S S MTBC_A1 C00008789 SRR2100248 tuberculosis S R S S MTBC_A1 C00008791 SRR2100250 tuberculosis R R S R R R R R R MTBC_A1 C00008804 SRR2100260 tuberculosis S R S S MTBC_A1 C00008808 SRR2100264 tuberculosis S S S MTBC_A1 C00008813 SRR2100269 tuberculosis S S S MTBC_A1 C00008826 SRR2100281 tuberculosis S S S MTBC_A1 C00008827 SRR2100282 tuberculosis R R S S S S S S S MTBC_A1 C00008832 SRR2100287 tuberculosis S S S MTBC_A1 C00008833 SRR2100288 tuberculosis S R S S S S S S S S MTBC_A1 C00008834 SRR2100289 tuberculosis S R S S MTBC_A1 C00008836 SRR2100291 tuberculosis S S S MTBC_A1 C00008840 SRR2100295 tuberculosis S R S S MTBC_A1 C00008849 SRR2100304 tuberculosis S S S MTBC_A1 C00008852 SRR2100307 tuberculosis S S S MTBC_A1 C00008853 SRR2100308 tuberculosis S S S MTBC_A1 C00008854 SRR2100309 tuberculosis S S S MTBC_A1 C00008860 SRR2100314 tuberculosis S S S MTBC_A1 C00008861 SRR2100315 tuberculosis S S S MTBC_A1 C00008862 SRR2100316 tuberculosis S S S MTBC_A1 C00008873 SRR2100327 tuberculosis S S S MTBC_A1 C00008875 SRR2100329 tuberculosis S S S MTBC_A1 C00008876 SRR2100330 tuberculosis S S S MTBC_A1 C00008887 SRR2100340 tuberculosis S R S S MTBC_A1 C00008896 SRR2100349 tuberculosis R R S S S S S S S S MTBC_A1 C00008899 SRR2100352 tuberculosis R R R S S S R S S S MTBC_A1 C00008903 SRR2100356 tuberculosis S S S MTBC_A1 C00008904 SRR2100357 tuberculosis S S S MTBC_A1 C00008905 SRR2100358 tuberculosis S S S MTBC_A1 C00008907 SRR2100360 tuberculosis S S S MTBC_A1 C00008910 SRR2100362 tuberculosis S S S MTBC_A1 C00008920 SRR2100371 tuberculosis S S S MTBC_A1 C00008922 SRR2100373 tuberculosis S S S MTBC_A1 C00008924 SRR2100375 tuberculosis S S S MTBC_A1 C00008927 SRR2100378 tuberculosis S S S MTBC_A1 C00008929 SRR2100380 tuberculosis S S S MTBC_A1 C00008932 SRR2100383 tuberculosis S R S S MTBC_A1 C00008934 SRR2100385 tuberculosis R R R S S S S S S MTBC_A1 C00009070 SRR2100391 tuberculosis S R S S MTBC_A1 C00009088 SRR2100270 tuberculosis S R S S MTBC_A1 C00009113 SRR2467270 tuberculosis S R S S MTBC_A1 C00012868 SRR2100467 tuberculosis S S S MTBC_A1 C00012873 SRR2100472 tuberculosis S S S MTBC_A1 C00012875 SRR2100474 tuberculosis S S S MTBC_A1 C00012882 SRR2100480 tuberculosis S S S MTBC_A1 C00012897 SRR2100494 tuberculosis S S S MTBC_A1 C00012899 SRR2100495 tuberculosis S S S MTBC_A1 C00012901 SRR2100497 tuberculosis MTBC_A1 C00012905 SRR2467271 tuberculosis S R S S S MTBC_A1 C00012907 SRR2100502 tuberculosis S S S MTBC_A1 C00012909 SRR2100504 tuberculosis S S S MTBC_A1 C00012913 SRR2100507 tuberculosis S S S MTBC_A1 C00012921 SRR2100514 tuberculosis S S S MTBC_A1 C00012924 SRR2100517 tuberculosis S S S MTBC_A1 C00012930 SRR2100522 tuberculosis S S S MTBC_A1 C00012942 SRR2100533 tuberculosis S S S MTBC_A1 C00012945 SRR2100536 tuberculosis S S S MTBC_A1 C00012947 SRR2100538 tuberculosis S S S MTBC_A1 C00012948 SRR2100539 africanum S S S MTBC_A1 C00012957 SRR2100548 tuberculosis S S S MTBC_A1 C00012958 SRR2100549 tuberculosis MTBC_A1 C00012959 SRR2100550 tuberculosis S S S MTBC_A1 C00012963 SRR2100554 tuberculosis S S S MTBC_A1 C00012972 SRR2100563 tuberculosis S S S MTBC_A1 C00012977 SRR2100567 tuberculosis S S S MTBC_A1 C00012988 SRR2100576 tuberculosis S S S MTBC_A1 C00012989 SRR2100577 africanum S S S S MTBC_A1 C00013010 SRR2100598 tuberculosis S S S MTBC_A1 C00013011 SRR2100599 tuberculosis S S S MTBC_A1 C00013018 SRR2100606 tuberculosis S S S MTBC_A1 C00013019 SRR2100607 tuberculosis S S S MTBC_A1 C00013020 SRR2100608 tuberculosis S S S MTBC_A1 C00013023 SRR2100611 tuberculosis S S S S MTBC_A1 C00013026 SRR2100614 tuberculosis S S S MTBC_A1 C00013029 SRR2100617 tuberculosis S S S MTBC_A1 C00013031 SRR2100619 tuberculosis S S S MTBC_A1 C00013038 SRR2100626 tuberculosis S S S MTBC_A1 C00013039 SRR2100627 tuberculosis S S S MTBC_A1 C00013048 SRR2100635 tuberculosis S S S MTBC_A1 C00013065 SRR2100651 tuberculosis S S S MTBC_A1 C00013074 SRR2100659 tuberculosis S S S MTBC_A1 C00013080 SRR2100664 tuberculosis S S S S MTBC_A1 C00013081 SRR2100665 tuberculosis S S S MTBC_A1 C00013091 SRR2100674 tuberculosis S S S MTBC_A1 C00013094 SRR2100677 tuberculosis S S S MTBC_A1 C00013096 SRR2100679 tuberculosis S S S MTBC_A1 C00013097 SRR2100680 tuberculosis S S S MTBC_A1 C00013098 SRR2100681 tuberculosis S S S MTBC_A1 C00013101 SRR2100684 tuberculosis S S S MTBC_A1 C00013102 SRR2100685 tuberculosis S S S MTBC_A1 C00013111 SRR2100694 tuberculosis S S S MTBC_A1 C00013114 SRR2100697 tuberculosis S S S MTBC_A1 C00013118 SRR2100701 tuberculosis S S S MTBC_A1 C00013119 SRR2100702 tuberculosis S S S MTBC_A1 C00013121 SRR2100704 tuberculosis S S S MTBC_A1 C00013131 SRR2100713 africanum S S S MTBC_A1 C00013133 SRR2100715 tuberculosis S S S MTBC_A1 C00013135 SRR2100717 tuberculosis S S S MTBC_A1 C00013145 SRR2100727 tuberculosis S S S S MTBC_A1 C00013146 SRR2100728 tuberculosis S S S MTBC_A1 C00013152 SRR2100734 tuberculosis S S S MTBC_A1 C00014539 SRR2100740 tuberculosis R R R S S S R B R R MTBC_A1 C00014550 SRR2100751 tuberculosis S S S MTBC_A1 C00014559 SRR2100759 tuberculosis S S S MTBC_A1 C00014562 SRR2100761 tuberculosis S S S MTBC_A1 C00014565 SRR2100764 tuberculosis S S S MTBC_A1 C00014571 SRR2100769 tuberculosis S S S MTBC_A1 C00014573 SRR2100771 tuberculosis S S S MTBC_A1 C00014577 SRR2100773 tuberculosis S S S MTBC_A1 C00014578 SRR1524019 tuberculosis S S S MTBC_A1 C00014581 SRR2100775 tuberculosis S S S MTBC_A1 C00014588 SRR2100782 tuberculosis S S S MTBC_A1 C00014601 SRR2100793 tuberculosis S S S MTBC_A1 C00014602 SRR2100794 tuberculosis S S S MTBC_A1 C00014607 SRR2100799 tuberculosis S S S MTBC_A1 C00014615 SRR2100906 tuberculosis S S S MTBC_A1 C00014623 SRR2100813 tuberculosis S S S MTBC_A1 C00014624 SRR2100814 tuberculosis S S S MTBC_A1 C00014631 SRR2100819 tuberculosis S S S MTBC_A1 C00014739 SRR2100830 tuberculosis R R R R S S R S R R MTBC_A1 C00014740 SRR2100831 tuberculosis S R S S MTBC_A1 C00014749 SRR2100838 tuberculosis R R S S S S S S S MTBC_A1 C00014759 SRR2100844 tuberculosis S S S MTBC_A1 C00014762 SRR2100846 tuberculosis S R S S MTBC_A1 C00014763 SRR2100847 tuberculosis S S S MTBC_A1 C00014779 SRR2100862 tuberculosis S S S MTBC_A1 C00014785 SRR2100867 tuberculosis S S S MTBC_A1 C00014786 SRR2100868 tuberculosis S R S S MTBC_A1 C00014788 SRR2100870 tuberculosis R R R MTBC_A1 C00014791 SRR2100872 tuberculosis S R S S MTBC_A1 C00014794 SRR2100875 tuberculosis S R S S MTBC_A1 C00014798 SRR2100879 tuberculosis S R S S MTBC_A1 C00014800 SRR2100881 tuberculosis S R S S MTBC_A1 C00014805 SRR2100886 tuberculosis S R S S MTBC_A1 C00014808 SRR2100889 tuberculosis R R R R R R S S S MTBC_A1 C00014811 SRR2100892 tuberculosis S R S S MTBC_A1 C00014813 SRR2100893 tuberculosis S S S S S R R R MTBC_A1 C00014819 SRR2100897 tuberculosis S R S S MTBC_A1 C00014821 SRR2100899 tuberculosis S S S MTBC_A1 C00014845 SRR2100910 tuberculosis S B S S MTBC_A1 C00014850 SRR2100915 tuberculosis S R S S MTBC_A1 C00014861 SRR2100926 tuberculosis S S S MTBC_A1 C00014863 SRR2100928 tuberculosis S S S MTBC_A1 C00014868 SRR2100933 tuberculosis S S S MTBC_A1 C00014870 SRR2100935 tuberculosis S S S MTBC_A1 C00014872 SRR2100937 tuberculosis S S S MTBC_A1 C00014876 SRR2100941 tuberculosis S S S MTBC_A1 C00014877 SRR2100942 tuberculosis S S S MTBC_A1 C00014879 SRR2100943 tuberculosis S S S MTBC_A1 C00014880 SRR2100944 tuberculosis S S S MTBC_A1 C00014888 SRR2100947 tuberculosis S S S MTBC_A1 C00014889 SRR2100948 tuberculosis S S S MTBC_A1 C00014891 SRR2100950 tuberculosis R R R S S S S S S MTBC_A1 C00014908 SRR2100963 tuberculosis S S S MTBC_A1 C00014918 SRR2100967 tuberculosis S S S MTBC_A1 C00014924 SRR2100973 tuberculosis S S S MTBC_A1 C00014936 SRR2100985 tuberculosis S S S MTBC_A1 C00014938 SRR2100987 tuberculosis S S S MTBC_A1 C00014939 SRR2100988 tuberculosis S S S MTBC_A1 C00014943 SRR2100992 tuberculosis S S S MTBC_A1 C00014946 SRR2100995 tuberculosis S S S MTBC_A1 C00014951 SRR2101000 tuberculosis S S S MTBC_A1 C00014954 SRR2101002 tuberculosis S S S MTBC_A1 C00014960 SRR2101008 tuberculosis S S S MTBC_A1 C00014970 SRR2101018 tuberculosis S S S MTBC_A1 C00014973 SRR2101020 tuberculosis S S S MTBC_A1 C00014993 SRR2101035 tuberculosis S S S MTBC_A1 C00015000 SRR2101038 tuberculosis S S S MTBC_A1 C00015007 SRR2101043 tuberculosis S S S MTBC_A1 C00015014 SRR2101050 tuberculosis S S S MTBC_A1 C00015022 SRR2101056 tuberculosis S S S MTBC_A1 C00015027 SRR2101061 tuberculosis S S S MTBC_A1 C00015221 SRR2101062 tuberculosis S S S MTBC_A1 C00016850 SRR2101089 tuberculosis S S S MTBC_A1 C00016851 SRR2101090 tuberculosis S S S MTBC_A1 C00016853 SRR2101092 tuberculosis S S S MTBC_A1 C00016860 SRR2101099 tuberculosis S S S MTBC_A1 C00016863 SRR2101102 tuberculosis S S S MTBC_A1 C00016874 SRR2101113 tuberculosis S S S MTBC_A1 C00016881 SRR2101120 tuberculosis S S S MTBC_A1 C00016884 SRR2101123 tuberculosis S S S MTBC_A1 C00016887 SRR2101126 tuberculosis S S S S MTBC_A1 C00016892 SRR2101131 tuberculosis S S S MTBC_A1 C00016897 SRR2101136 tuberculosis S S S MTBC_A1 C00016898 SRR2101137 tuberculosis S S S MTBC_A1 C00016899 SRR2101138 tuberculosis S S S MTBC_A1 C00016901 SRR2101140 tuberculosis S S S MTBC_A1 C00016903 SRR2101142 tuberculosis S S S MTBC_A1 C00016907 SRR2101146 tuberculosis S S S MTBC_A1 C00016912 SRR2101151 tuberculosis S S S MTBC_A1 C00016916 SRR2101155 tuberculosis S S S MTBC_A1 C00016917 SRR2101156 tuberculosis S S S MTBC_A1 C00016919 SRR2101158 tuberculosis S S S MTBC_A1 C00016922 SRR2101161 africanum S S S MTBC_A1 C00016924 SRR2101163 tuberculosis S S S MTBC_A1 C00016930 SRR2101169 tuberculosis S S S MTBC_A1 C00016934 SRR2101173 tuberculosis S S S MTBC_A1 C00016943 SRR2101182 tuberculosis S S S MTBC_A1 C00017919 SRR2101186 tuberculosis S S S MTBC_A1 C00017922 SRR2101188 tuberculosis S S S MTBC_A1 C00017923 SRR2101189 tuberculosis S S S MTBC_A1 C00017926 SRR2101192 tuberculosis S S S MTBC_A1 C00017937 SRR2101203 tuberculosis S S S MTBC_A1 C00017949 SRR2101215 tuberculosis S S S MTBC_A1 C00017954 SRR2101220 tuberculosis S S S MTBC_A1 C00017956 SRR2101222 africanum S S S MTBC_A1 C00017969 SRR2101235 tuberculosis S S S MTBC_A1 C00017973 SRR2101238 tuberculosis S S S MTBC_A1 C00017975 SRR2101240 tuberculosis S R S S MTBC_A1 C00017976 SRR2101241 tuberculosis S S S MTBC_A1 C00017977 SRR2101242 tuberculosis S S S MTBC_A1 C00017987 SRR2101252 tuberculosis S S S MTBC_A1 C00017988 SRR2101253 tuberculosis S S S MTBC_A1 C00017989 SRR2101254 tuberculosis S S S MTBC_A1 C00017991 SRR2101256 tuberculosis S S S MTBC_A1 C00017992 SRR2101257 tuberculosis S S S MTBC_A1 C00017999 SRR2101264 africanum S S S MTBC_A1 C00018000 SRR2101265 tuberculosis S S S MTBC_A1 C00018001 SRR2101266 tuberculosis S S S MTBC_A1 C00018005 SRR2101270 tuberculosis S S S MTBC_A1 C00018006 SRR2101271 tuberculosis S S S