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VEP run statistics

VEP version (API) 78 (78)
Cache/Database ./cache/vep//homo_sapiens/78_GRCh38
Species homo_sapiens
Command line options 
--input_file ./WES_human_samtools_annotation_20150904_17:31/variant_filteration.vcf --cache --species homo_sapiens --sift b --check_existing --vcf --output_file ./WES_human_samtools_annotation_20150904_17:31/variant_annotation.vcf --dir ./cache/vep/ --offline --force_overwrite
Start time 2015-09-04 17:32:28
End time 2015-09-04 18:47:26
Run time 4498 seconds
Input file (format) ./WES_human_samtools_annotation_20150904_17:31/variant_filteration.vcf (VCF)
Output file ./WES_human_samtools_annotation_20150904_17:31/variant_annotation.vcf [text]

General statistics

Lines of input read 47025
Variants processed 46963
Variants remaining after filtering 46963
Lines of output written 46963
Novel / existing variants 1537 (3.3%) / 45426 (96.7%)
Overlapped genes 21766
Overlapped transcripts 97860
Overlapped regulatory features -

Variant classes

 
 

Consequences (most severe)

 
 

Consequences (all)

 
 

Coding consequences

 
 

SIFT summary

 
 

Variants by chromosome

 
 

Distribution of variants on chromosome 1

 

Distribution of variants on chromosome 2

 

Distribution of variants on chromosome 3

 

Distribution of variants on chromosome 4

 

Distribution of variants on chromosome 5

 

Distribution of variants on chromosome 6

 

Distribution of variants on chromosome 7

 

Distribution of variants on chromosome 8

 

Distribution of variants on chromosome 9

 

Distribution of variants on chromosome 10

 

Distribution of variants on chromosome 11

 

Distribution of variants on chromosome 12

 

Distribution of variants on chromosome 13

 

Distribution of variants on chromosome 14

 

Distribution of variants on chromosome 15

 

Distribution of variants on chromosome 16

 

Distribution of variants on chromosome 17

 

Distribution of variants on chromosome 18

 

Distribution of variants on chromosome 19

 

Distribution of variants on chromosome 20

 

Distribution of variants on chromosome 21

 

Distribution of variants on chromosome 22

 

Distribution of variants on chromosome MT

 

Distribution of variants on chromosome X

 

Distribution of variants on chromosome Y

 

Position in protein