Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing

Supplemental material

• Supplemental file 1 -

  Fig. S1 (Number of P. acnes strains detected across samples) and S2 (Circos plots showing BWA mapping of all human depleted reads to the 12 full P. acnes genomes currently present in GenBank)

  PDF, 479K

• Supplemental file 2 -

  Table S1 (Accession numbers for P. acnes sequences used for the analysis)

  XLSX, 51K

• Supplemental file 3 -

  Table S3 (Comparison of numbers of P. acnes reads used for typing when all P. acnes reads or only reads mapping unambiguously to one strain are considered)

  XLSX, 59K

• Supplemental file 4 -

  Table S2 (Data used for analysis of relative levels of P. acnes)

  XLSX, 80K

• Supplemental file 5 -

  Table S4 (Relative abundances of P. acnes strains detected in different sample types)

  XLSX, 79K

• Supplemental file 6 -

  Table S5 (Relative abundances of P. acnes strains in individual samples)

  XLSX, 144K